<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-02-05 14:57:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593684" ref_strand="+" ref_description="SGN-U593684 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagcatgtctgatcttcaaggacatcaagacatgaatgagagagaatccagtccgagctaggaacaatagctcaccctgaaatctgacgtgatgaagactggttagagttgcggttgagttgaagacgacggtacgtttgctgcactccacaattaacaaaaagaaaacataaaagtaggggtcagtacaaacacgagtactgagtagatatcatcggccaactcagaatagagaacaatatatatcaaataataaaataaaatcaaccataacacttaacaggtgacaacaacaagtaccataaccattgggcacaacccaagaacatctatgaggactcaagcctccacaccatactcatttgggaaacaggttcattaaattgagtacattaacataattcaagattcattctttttactatcgtggtgtcggaacgtgatactccgatcccctaatgctacgtgtcggttcgtgacacccgatcccctaatactacgtgtcggttcgttacacccgatctcctaatactacgtgccgattcgtgacacccgatccattaatactatgtgtcggttcgtgacacccgatccattaatactacgtgtcggttcgtgacacccgatcccctaacctcattcttttagttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3010" stop="1604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2714" g_stop="2083" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2082" i_stop="1926" i_length="157">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1925" g_stop="1904" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="655" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U593684" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2714" e_stop="2083"/>
          <exon e_start="1925" e_stop="1904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATGTCCGAACTTCAA-GACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAACTCACCCTGAAATCTGATGCGATGAAGACTAGCTAGAGTTGCGGTTGAGTTGAAGATGACGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAGGGGTCAGTACAAAACACAAGTACTGAGTAGGTATCATCGGCCAACTAAAAATAGAAAGCAATATATATCAGATAATAAGGTAAAATCAACCATAACACTTAACAGGTAACAACAACAAGTACCATAACCATTGGCCACAACCCAAGCACATCTATGAGGTCTCAAGCCTCCACACCATACCCATTTGGGAATCAGGTTCATTAAATTGAGTATATTAATATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTCGGAACGTGACACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTATGTG-CGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGACACCCGATTCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGATACCCGATCCCCTAATGCTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGTCACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGATTAACCTCATTCTTTTAGTTCATCA</genome_strand>
        <mrna_strand>CAGCATGTCTGATCTTCAAGGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGACGTGATGAAGACTGGTTAGAGTTGCGGTTGAGTTGAAGACGACGGTACGTTTGCTGCACTCCACAATTAACAAAAAGAAAACATAAAAGTAGGGGTCAGTAC-AAACACGAGTACTGAGTAGATATCATCGGCCAACTCAGAATAGAGAACAATATATATCAAATAATAAAATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGAACATCTATGAGGACTCAAGCCTCCACACCATACTCATTTGGGAAACAGGTTCATTAAATTGAGTACATTAACATAATTCAAGATTCATTCTTTTTACTATCGTGGTGTCGGAACGTGATACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTTACACCCGATCTCCTAATACTACGTGCCGATTCGTGACACCCGATCCATTAATACTATGTGTCGGTTCGTGACACCCGATCCATTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTA.............................................................................................................................................................ACCTCATTCTTTTAGTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14548" stop="15864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14850" g_stop="15564" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="730" r_length="718" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14850" e_stop="15564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGGTTATGGGCCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTTCCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGG-TCTTATTTTCATATACAC-AGAGAG-TTTTTCAGCAGCCAAAAAGAGAGAAAGAGAGCAGTTTTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGACTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGTACAGCATATTGTCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGTCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTTCTCATTGTTTGGCAC-TTGTTTTTTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTATGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGTGTATTCTTCCGCTATTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>TACTGTTGGGTTATGGACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTGTTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAG-A-TTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563371" ref_strand="+" ref_description="SGN-U563371 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147842358|emb|CAN76207.1| (e_value=5e-51) hypothetical; (*ATH) AT4G15240.1 (e_value=5e-42) | Symbol: None | fringe-related protein, weak similarity to Fringe (Schistocerca gregaria)(GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. | chr4:8703075-8705378 REVERSE | Aliases: DL3665C, FCAALL.244; ">
      <seq>gcggaaacggttgcattgaatcattctaatgttaggtggtatgtttttggagatgatgatacggtttttttcacggagaatttgttgaagacgctatcgaaatatgatcacggattatggtattatatcggatcgaattcggaacattttttgatgaataaagctttttcgtatgaaatggcgtttggtggtgctggaattgctataagttctccgttagctaaagttcttggaaaagtgtttgatgcatgtatcgaaaggtaccctcacctttttggtagtgatgctaggatttattcatgtttggctgaacttggtgttgggttaacccatgaacccggttttcatcagactatttacaggaaaaagacccctgagaattgtactatcacaatggtgtcacctagaagactagaagaaatcagagttgtttcacaaaagttagaaatcgacagaaatcggttgctatcaccaagaagacaatgttgtgatgtgttaccatctacatcaagaaatgttatggatgtcgcgataagagaatgcaaagaagacgaactgatattcatacatccttagttgtggtgacattcaacaagttgatatttgatggcaaattggtgatgggatatgaaggatttataagaacagaggattttcgcggttatccccaattaagccaatactattttgctttctctaagcataacatctactctcctttgcttgtgaagttgatttaggaaagcagtttaggaaatttaagtatgaacttagtaggattagagtgtacttaaggaaaatggaattataattatatagtatgtaactacaaagctatgcacatctgcataagcaatcaaatgtgaagaaacttgggagttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="18601" stop="21966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18900" g_stop="19250" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19251" i_stop="20391" i_length="1141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20392" g_stop="20502" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="462" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21245" g_stop="21666" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="884" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U563371" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18900" e_stop="19250"/>
          <exon e_start="20392" e_stop="20502"/>
          <exon e_start="21245" e_stop="21666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAGGTACATTTCTATCGAAATTTTAAAAGTTTGACCAAACATATTATCGAGTCTATTTTAACTAGTTAAAAATGTTACTTACATCATTTTCTATGTTACCTTATTAGAATTGGGTATGATTTGTTACTTCCTCTGTTCCATTTATACATAAAAAATGTGGCTCATTTTAACTTAATTTTAATTGATATTTCAATTTTGAGTGTGTATAGGTAGATTCTGTATATAATTAGACAAGTAGACATACACATCCTACGCAGTGGTGGACCCAGAAATTTTATAAAGGATGTCCAAAATTAGCAATTTATTATGTTAAGAATGTCCAAAATATGTTATTTAATCATTTTACTTGTATATATGCATTTTTTTTCTGACAAAGGGTGTCCAAAATTGGACCTTACCACTATGTGGCTAGGTCGTACGTGACATCCTACATGACGTCCTATGTTGATTAAGTCACGTAGGATATGTATGTCTACATGTTCAACTTTATACAAGTTTAAATATCTACTTATACACATTCAAAATTGGAGGAAATATATGTCAGAACATATTATGTCGTTCCATTTTATTAGCACTTAATAGTTGGTTTCAGAAAATGTTAAAATTTGCTAGTAATTGGAATAAATGAAGTACTACTATAAGTTTTGTGTAGGTGTTTTTATATTTTTCTAAAAGTTAAGTGACACAAACATTTTTTCTTTTTTGGAATTTGTAATACCAGTTAGATGTAAGAGGAAATATGTTTGGAGTATTGGCTGCACATACACTTAGACCATTGGTCTCTCTGCATCATTTAGAGATGAATGATCCTATATTTCCAAACATGACGAAAATGAAATCTCTAGAGCATTTATACAATGCTGCAAAGTACGATCCTCATCGTATTTTGCAGCAAACAGTATGCTACGATCGTTGGTTTACTTGGACAGTTTCTGTATCGTGGGGATACGCTGTTCAAGTCTTCAGCTACAACATCTTCTTGCCTGATGCTCTACGTATACAGGAGAGTTATTTTCCGTGGCAAACGAGTGATTTAGCTAGACATTATGACTTTGATACAAGGCCATATGAACCTGATCCTTGTAAAAGACAGCTTGTTTATTTTCTACATAATGTGTCTACTGGAATTAATGGACAGATCAAGACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGGGTAATGTTCCTCTCTATCAAAACATTTCACTATAACAATCGTCTTTTCTATACATATTATGTTATTGGAGGACAAACAATACTGTTATAGAAAGGTTTGACTTTGCTGCTGAGTATTATTCTGTGTTTACCTTCTGAAACTTTTGGTCTAATCAATGACATATATGTTATATGAGGACAAATAGTATTGTTATAGAAAGGTTTGACTATACTGCTGAGTATAATTCTGTGTTTACTTTCTGAAACATTTGGTCAATGACATCTTATGTTATATGAGGACAAACGATACTGTTATAGATAGGTTTGATTGTAATGTTGAGTACCCTTCTGTGTTTTCTTTCTGAAACTTTTGGTCTAATCAATGGCATATTATGTTATATATGAGGATGAACAATACTGTTATAAAAAGGTTTGACCGTACTGTTGAGTACAATTCTATGTTTACTTTCTGAAACATTTGGTCGATGGCATCTTATGTTACATGATGTTACAGATAGATTTGACTGTACTGCTGAATACCATTCTGTGTTTATAAGGATAAACGATACTGTTATAGATAGGTTTGATTGTACTGTGTTGAGTACCATTCTATGTTTACTTTCTGAAACATTTGGTCAATGACATATTATGTTATATGAGGACAAACGATACTGTTATAGAAAGGTTTGACTGTACTATTGAGTATCATTTTGTGTTTACTTTGTGAAACATTTGGTCTGATAAATGACATATTATATATGCAGTTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAAT</genome_strand>
        <mrna_strand>GCGGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599418" ref_strand="-" ref_description="SGN-U599418 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349108|emb|CAO24186.1| (e_value=2e-34) unnamed; (*ATH) AT2G32280.1 (e_value=5e-35) | Symbol: None | expressed protein | chr2:13720137-13721086 FORWARD | Aliases: T32F6.20, T32F6_20; ">
      <seq>aaaacatgtgacattatggttgtttgagtgtaacaagccaagtcatgaggcatttgttttagggttagctgctgcaactctacttggagtagctcatgttctagccaaccttgttggaggctgtagtgtttgtagtaatgatgatattcgaaaagcaacaccaatcaagcaattatcaattgcttgtcttgttttcacatggatcatatttgcagcaggattgagtacattggtgattgggacaaagggaaaccccaagtcaagaacatcatgtggttatttacatcataattacctatccattggtggaattctttgttttgttcatgctttactttctgttgcgtattatgttgcagctagtcaaaatctagcttaacttttcacttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32930" stop="31381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32630" g_stop="32430" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32429" i_stop="31873" i_length="557">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31872" g_stop="31681" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="393" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U599418" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599418" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32630" e_stop="32430"/>
          <exon e_start="31872" e_stop="31681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGTGACATTATGGTTGTTTGAGTGTAACAAGCCAAGTCATGAGGCATTTGTTTTAGGGTTAGCTGCTGCAACTCTACTTGGAGTAGCTCATGTTCTAGCCAACCTTGTTGGAGGCTGTAGTGTTTGTAGTAATGATGATATTCGAAAAGCAACACCAATCAAGCAATTATCAATTGCTTGTCTTGTTTTCACATGGTAAGTTATAGTATAATACTCGTGTTTTAATTTATATGATATCGTCGATTGATCTGTTTTATCAATGATTTGTAACTCAAAAGATAGGGAGGCATAATCCCCAATCAAGGGGTTATTGTTATGTCATGTATGACCTATATTTCTATTGAGCATATTTTGAGAGTCAATTTTTTTTAGTTTAGTTTATCTTTTATTTTTTTCCTTTTCGTAAAAAGAGAGTGAATTATATGAGGTGGAAATGATTGCTTGCGATCACTTATTCATATCTCTCATGAGCAAAAATAAGAATCACTCGTAATGAGGATATGAAATTAAAAATAAATTTATAAAAGACTAGAATATCGTATCTCGTGTGTTATATGCTATGTTACCCAGACTCTTTACAGATATCGCCAGGTGTGCATGTCGGATCCTTCAAAAGCAGTACGTCTTTTGAAGGATCTAATACGGGTGCAACAACATAATTGAAGAATCTTAATAAATTAAGTTATATGTCTATAAAAAATTTTGAAGCAGAAAAATATTAATCATGTGCTTGTGTTTTTTGGATTTTTCAGGATCATATTTGCAGCAGGATTGAGTACATTGGTGATTGGGACAAAGGGAAACCACAAGTCAAGAACATCATGTGGTTATTTACATCATAATTACCTATCCATTGGTGGAATTCTTTGTTTTGTTCATGCTTTACTTTCTGTTGCGTATTATGTTGCAGCTAGTCAAAATCTAGCTTAACTTTTCACTTTTAC</genome_strand>
        <mrna_strand>AAAACATGTGACATTATGGTTGTTTGAGTGTAACAAGCCAAGTCATGAGGCATTTGTTTTAGGGTTAGCTGCTGCAACTCTACTTGGAGTAGCTCATGTTCTAGCCAACCTTGTTGGAGGCTGTAGTGTTTGTAGTAATGATGATATTCGAAAAGCAACACCAATCAAGCAATTATCAATTGCTTGTCTTGTTTTCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATATTTGCAGCAGGATTGAGTACATTGGTGATTGGGACAAAGGGAAACCCCAAGTCAAGAACATCATGTGGTTATTTACATCATAATTACCTATCCATTGGTGGAATTCTTTGTTTTGTTCATGCTTTACTTTCTGTTGCGTATTATGTTGCAGCTAGTCAAAATCTAGCTTAACTTTTCACTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591684" ref_strand="+" ref_description="SGN-U591684 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|74273314|gb|ABA01325.1| (e_value=6e-11) VDRG6; (*ATH) AT1G70830.2 (e_value=2e-12)  Symbol: None | similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:At1g70850.2); similar to Csf-2 [Cucumis sativus] (GB:BAA83470.1); contains InterPro domain Bet v I allergen (InterPro:IPR000916) | chr1:26713609-26715098 REVERSE ... ; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=2e-11) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28; ">
      <seq>ggggacatacttattattataataaactttgtgatatatatcatagaagaaaaatgagtcttcaagggaagttgatttctgagataaatatcaaatgtaatggagatgtgtttcatgaaataattaagtacaaaccacgtgatatctttagtatatgctctgataagatacaaaatatggatattcatgaaggtgaattaggcaatattggctctgttaaatcctggaaattcacctatgtacatgatttgtttgcaggtgggaaagagatttttgtgaaggaagtaattgaagaaatagatgatgaaaagaagttgattaaaaagaaggtaattgaaggtgatttattgnagtattataaatcattttatggcactattcnanntngagacaaanggtgaaaacaacttagttacttggatcatggaatatgaaaanaagaatgtgaatgtaccagatccacactatttaatggaattttgcctnnnncnnctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="44267" stop="38955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43973" g_stop="43731" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43730" i_stop="43461" i_length="270">
            <donor d_prob="0.665" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43460" g_stop="43280" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="420" r_length="180" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43279" i_stop="39320" i_length="3960">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39319" g_stop="39243" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="496" r_length="76" r_score="0.805"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U591684" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43973" e_stop="43731"/>
          <exon e_start="43460" e_stop="43280"/>
          <exon e_start="39319" e_stop="39243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTAATACTTATTATTATAATAAACTTTGTGATATATTATATCATAGAAAAAAAATGAGTCTTCAAGGAAAGTTGATTTCTGAGATAAATATCAAATGTAATGGAGATGTGTTTCATGAAATAATTAAGTAGAAACCACATGATATCTTTAGTATATGCTCTGATAAGATACAAAATATGGATATTCATGAAGGTGAATTAGGCAATATTGGTTCTATCAAATCCTGGAAATTAACCTATGGTAAATTTAGTTTCAATATTTGTTTTTGTAGGGTCTGTAGAAATTACATGTCAGTTAGTTCCGTTGGACATGTTTCTTTGACTTGTTTCAATCATCATCTTCCTTCCTCTTCAACGAGGTCATTAATTTTTCTTGTTCAAATTGTAAGTAAGCTATAGGGGATCATTTTCTCGAAAAAAGTTTAGACATTATCCGATCATTATTTTTATCAATTCAAACCATTTTTAACCCATTCAGATTCAATCGAAATTAGTAGTACTATGTAATATTTACTACATTTTTTTGCAGGTGGGAAAGAGATTTTTTGTAAAGTAAGTAATTGAAGAAATAGATGATGAAAAGAAGTTGATTAAAAAAAAGCTAATTGAAGGTGATTTATTGGAGTATTATAAATCATTTTATGCCACTATTC-ATGTTGAGACAAAGGGTGAAAACAACTTAGTTACTTTGGATCATGGAATAAGACTGGTCAACGGACCGGAACCGGGTCACCGGACCGGAATGAACCGGTACCGGACCGGACCGGAATCCGTTGACCGGAATTTTGACCGGTACCGGGATGAACCGGACCGGAATTACCGGGATGGTTCATCGGTTCCGTCCCGTTCCACTATATATCGGGACGGAACCGGAATGAACCGGAACGGACCGGGATGGAATGGGACGGGATTAACGGGACGATATTTTTTAAATTACGAAAATATAATTTTTTTTTATTTTTTAAGTATAAATTAATAGTTTTTAAATTTATACTATAATTTTTAACTTAAGTTTATTTTAAAGATATTTTATTAATTTTTTTTTATTATTGTTAAGTTTGCAAGTAATCTAATAAAGTTTTCAAGATTTAAATCTTTTGAAGTTTATACTTTATAAGTTATTACTTATATTTATTAATATTTATTTTATAAGTTATATTTATAACTTGTATCTTGTAAATATTAAATAAATAAAATTTGTAATTTTAAAAAAGTAAATGAAATTACAAAAATTAAAAAATATCAATTTAATTTATTTAAATTTGTAACAAATTACAATTTCAATTTACAACTATTGGTAGAGTACATAGCTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTATGTCTCGAGACTCGAATGTAATACTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTAGGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCACATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGCTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGATGCCTCCGAAGCTACTGATGATCCTTGAATTGCAAGCACATCCTTCACCATCCTACTAAGTTTTGGATATTGAGCTCCACGATTTCTCCACCAGTTCAATAGTTCCGGTATACCATTATCGTTTGTAATATCATATGTACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCGTCCATGAGCACCTACTTGATTTGTAGACGTTTGAGGATTTTCAACATTATCTAAGAATGAATATTTATCATACATTTCTTTTGCAAAGTATTTTATACTATTTTGATATGTTACCAAATCAGGTTCTTCTTCAGGTTGAATATCTAAATTCTGATAAATGCATTCAACTAAAGCTTTTGTACCATATTCTTTATATTCGGGGTTGAAAAGAAGTGCAGTTAAATAAATTTGAGGAATAGGAAAAAAATATTTTTTAAATTTTGTAATCATAACTTCAATAGCAGAGGTGAATAAAGTATTTGTTTTATATTCAGAAAAAATAGATGAAATCTCACATATGTGTATTAAAATTTCAGAAATAGTAGGATAATATATTCCAGAAAAAATTTTAGTAGCATCATAAAATGATTTCAAAAATATTCTAAGTTCATTTACTTCATCCCAATCACTATCATTAATTTTAAATTCAGGATAAGCATTATGATTATTAAATAGCGTAGTAATAGGTTGCCTATATGCATAAGCAACTTCAAGCATATCATAAAAGGAATTCCATCTAGTTTTTACATGCTTCGGAACTTTTCTAAACGGAAGTTTAAATGCATTACAAAGTTCTTTAAATTGATTAATTCTACTACTACTATTCATATGAAAAATGTAAAAACAAGCATTATCAATTTTATCACAACTATTTTCAAATAATTTCACACCGTCACTAACAACCAAATTTAATATATGCGCGGCACATCTAACATGAAAAGCATATTTACTAATAGGACAAAGTCTAGGTTCTAGCAAATTAATAGCATTTAAATTAGCAGAGGCATTATCTAAAGTAATACTAACGACTTTATCACAAAGACCAAAAAAATCTAAAATTTCCAACACAGTAGTAGCAATATAAATTTCGGTTTTTTTCTTTTGACAAATTTTATAACCAATAATTCTTTTTTGTAAATTCCAATTATAATCGATCCAATGCGCAGTAACAGTTAAATAATCAAAACCATTAGGACTACGACCCATATCAGTAGTAATAGCAACTCTACAATCCATTAGTTCAAAATAGGCACGTAAATATTGACAATGTTTTTCTTGAAATTCGAAAATATCTCTTTTTACCATGCTTATTGATAAACCTTGAAAACTAGGATTATATGTTTCACGAATATAAGCAATAAAACCCGGATGTTCTCCAAAACTAAAAGGTAAACCACAAACAACAACCATTTTAGCAAAGTTTTCACGATCACGATCCTTGTTATAGGTTCGATGTGTAAGAGGACCACTTGGGTTCGAAGTATTTAACTCACTTTGAACCATATTTGATCCTCTAACCGATTCTTCAACATTACAATTTCCACCAACTTCAAGAGAAGACATATATGCAAACCACTCTTTACTATGCTTGTTAATCAAATGTTTTTTTAATCCCCCCGTTGAACCTCCCGTCCCACCAGATGTATATTTAAAATGTTGTTTACAAAGATTACATATACTAAAAGTTTTTTCTTCATTCAAATAACAAAATTTCCACACATGTGATTTTAAAGAACGTTGTACCTTGGTCTTACCTCTAGTTGGAATAATAAGGGGACGAGTAGTTCCAACCGGAGGTGGAGCTTCAATACCTATACTATTGACTGTATTGAGGTCGGCGGCGGGGCTAGTCGGTGTATCATCTAAATCTACTTCTTCATCTAAATTTAATTGTTCATCCGTTTCCACTTCTTCATTTTCTTGATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTATATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGACGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATACTTATAAATATGAATGTAATTTGGAAATATATATTCTCTCAAATACTCAGATTATATTTGTAAGTTGTAAACTTGTAAATAAAATTTTTTTACACACAACTCTAATTTATACAACAAAAAAACTAGCCGTTTTAATTTTTCCGTTTAAAATTTAAAGCCGTTCTTGGGAAAAGGGTAGGGGGCGGGGGGAGGGGGGCCTGCACTGCAGCTGCAGTGCTGCTTTATGCAGACTGCAGTCTGCAGTCTGCAGGGGCGGGCAGGGCGGGCAGGGGCGAGATTTTTGAAAAAAATTTAAATTTTAAAATATAATTTATAAAAAATATAAATATAAATTATATAAAATATAAAAAAATTAATATATATTAAATAAACCGGACCGGAACCGGAACGGACCGGACCGGAACCGGAATGAACCGGGATGAACCGGTACCGGTACACCGGTACGAAACTACGATTCCGTCCCGTTCCGTGTACCGGTTTAGAATATCCCGACCCGTCCCGTAGGCAACCGAAACGGGACGAACCGGAACGAACCGAAACGGTACCGGTACGTCCCGTTCCGTTGCCCAGTCTTATCATGGAATATGAAAAGAAGAATGTGAATGTGCCTGATCCACACACTTTAATGGAATTATGCATCAATGTCACTAA</genome_strand>
        <mrna_strand>GGGGACATACTTATTATTATAATAAACTTTGTG--ATA-TATATCATAGAAGAAAAATGAGTCTTCAAGGGAAGTTGATTTCTGAGATAAATATCAAATGTAATGGAGATGTGTTTCATGAAATAATTAAGTACAAACCACGTGATATCTTTAGTATATGCTCTGATAAGATACAAAATATGGATATTCATGAAGGTGAATTAGGCAATATTGGCTCTGTTAAATCCTGGAAATTCACCTATG..............................................................................................................................................................................................................................................................................TACATGATTTGTTTGCAGGTGGGAAAGAGA-TTTTTGTGAAGGAAGTAATTGAAGAAATAGATGATGAAAAGAAGTTGATTAAAAAGAAGGTAATTGAAGGTGATTTATTGNAGTATTATAAATCATTTTATGGCACTATTCNANNTNGAGACAAANGGTGAAAACAACTTAGTTAC-TTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGGAATATGAAAANAAGAATGTGAATGTACCAGATCCACACTATTTAATGGAATTTTGCCT-NNNNCNNCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599011" ref_strand="+" ref_description="SGN-U599011 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaattacattcatatttataagtataagtgtataacttatatcatttggtcatttggtgtatttcccaggaggaatcttcttcaaatttcaagtttcgacatcaatattttaattttcattataatcgtttgttcttatacaaacgtttggtaacttcgttccactctctaatcttatatttattttttgtatttattatttaacttgtaagttgttcttgttaagtttcgtattttataatttataattttatatcatggagtcttctaaaaaaagtggaagtaaaaaaggtctagtagaatcagtaaaaaaattagttaaaaaaactaacaaaggtgctagttcgtctaaatctaaaattcctcttgttagaataaatacagatgaatttacgcatgtgaatgaaactagtttttcccgtcccggtcctataaatattaattcagatagtccgactccccatgaactctatgaaagatattatggtattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="39572" stop="40657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39894" g_stop="40357" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="494" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U599011" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39894" e_stop="40357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCGTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATATAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</genome_strand>
        <mrna_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCCCAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="57883" stop="58974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58183" g_stop="58673" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58183" e_stop="58673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTGTCTGATATGATGGAGAGTGGAACCCCATGCAACTGAACAATTTCTGATACATAGATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCAACAATGTCGCGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTGACGGTACATCTTGGTTGCACCAGGATGTATAGAATATCCGGAACTATGAGCCTCTGTAAGGATGGTGTGGATCAAATCATCAACACGGG</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59144" stop="60559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59448" g_stop="60260" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59448" e_stop="60260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAACTCCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGTTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGGTTCAAGATCAATGTAGAAGTCGATGTCTCTCTCCGGTGGCATACCCGGAAGGTCTT</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="62426" stop="59277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62127" g_stop="61254" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61253" i_stop="60139" i_length="1115">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60138" g_stop="59577" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1436" r_length="561" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62127" e_stop="61254"/>
          <exon e_start="60138" e_stop="59577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAG-CCATCTGATAATAGCGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACATAATGAGGAATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATACGGCTACTGTGGCTCCCCGCATGGATGCCCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGAGATAGGAAAAGATATAAGTTCTTGTGCCTAGAGCAAGGTAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTATTTCAGTCCACAAGAGCGAATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCAGCCTTATAGGTAGCGGCTACGGCGAAATCTTTTCAAGAAGTGGTAGACATCGTGATAGAGGTAGAGGGAGTGAAGACAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGAACAGGGTTCAGGAGGTTACTCAGTCTGACCAATTCAGTCCTCACTACAGACTGTAGTTAGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATCAAGAGTTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGCGGTGGTCAAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAGGTGAGAGGGCCCATTGTTATGCTTTCCCTGGGAGATCTCAAGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGATTTTGTATTATTTGACCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTTTCCTGTGACTTTTATGGAGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGATTTGGCTTTCTCCGAATTTTGCATTTTTTGATTGTAATGCTAAAACTGTGACGTTATCCAAGCCTGGGACAGATCCATTAGTGTGGGAGGGTGACTACACTTCCTATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCATGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTCTCGATAGTTCGTGAGTTTTTAGATGTGTTTCCCGAAGACCTTCCGGGTATGCCACCGGAGAGAGACATCGACTTCTACATTGATCTTGAACCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGGATCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTGCTAAGCAAAGGCTTTATTAGAACAAGTGCATCTCCTTGGGGTGCTCCGGTATTATTTGTGAAGAAAAAGGATGGGAGTTTTAGGATGTGCATAGACTATCGGCAGTTGAACAAGGTAACTATTAACAACAAGTATCCCATTCCTCGCATAGATGACTTGTTTGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATAAGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACTAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATCTGGATCTCTTTGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTTAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATGAAGTGTCCTTCTTGGGGCATGTGGTTTCGA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60140" stop="61064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60439" g_stop="60764" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60439" e_stop="60764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCTGTCCCAGGCTTGGATAACGTCACAGTTTTAGCATTACAATCAAAAAATGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGAAAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAATCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="62393" stop="61239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62093" g_stop="61539" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62093" e_stop="61539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAG-CCATCTGATAATAGCGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACATAATGAGGAATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATACGGCTACTGTGGCTCCCCGCATGGATGCCCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588617" ref_strand="+" ref_description="SGN-U588617 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=4e-80) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=4e-12) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttcttaagcgtatttttcctcatcaagacgagtacaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="65853" stop="67231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66153" g_stop="66930" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U588617" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66153" e_stop="66930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGATACTGGTGCCGCCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTCAAGCGCA-TTTTCCTCATCAAGACGAGTACAAAGGAA</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTG-CGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577424" ref_strand="+" ref_description="SGN-U577424 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|13172242|gb|AAK14060.1|AF239177_1 (e_value=7e-32) major; (*ATH) AT5G28010.1 (e_value=2e-28)  Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Al... ; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=5e-26) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28; ">
      <seq>cnttacggccggggaaccacacacattttattagaactttgtgatatatcatatcatagaagaaaaatgagcctccatggaaagttagtttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacagttgactctgttatcttttggaacttcatccatgatggaaaagaagtggtggcaaaggagaaagtggaagaaatagatgaagaaaacaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttattttaaagggactatagtttttctttcttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90378" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90078" g_stop="89839" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="253" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88569" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="824" r_length="571" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88568" i_stop="88464" i_length="105">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88463" g_stop="88443" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="845" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U577424" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90078" e_stop="89839"/>
          <exon e_start="89141" e_stop="88569"/>
          <exon e_start="88463" e_stop="88443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACACACATTTTATTAGAACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTATATTTTTTTTTCTTTTTTTTAGTTCTCTCTGTTGTCTCAAAGACTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAATGAGCGGATATCAAATTTTTATAGATAAATAAAAAATAAAA</genome_strand>
        <mrna_strand>GAACCACACACATTTTATTAGAACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG-T-T-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTTAAAGGGACTATAGTTTTTCTT-TCTTTTTTA.........................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590160" ref_strand="+" ref_description="SGN-U590160 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13172242|gb|AAK14060.1|AF239177_1 (e_value=7e-29) major; (*ATH) AT5G28010.1 (e_value=1e-25)  Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Al... ; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=2e-23) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28; ">
      <seq>cncacnctttttattagaactttgtgatatataatatcatagatgaaaaatgagcctccattgaaagttagtttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatttcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacagttgactctgttatcttttggaacttcattcatgatgggaaagaagtggtggcaaaggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaaagataattgaaggagatatattagagtattacaaatcattttatatcacttttcatgttgagacaaaaggtgaaaataatttagttactttaatcatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatcgaattactcctcaatgtaaccaaagatattgagaattatcacattaagtgatacataaatattatatacggggactctttgaaaatatcgataatatatgtcgaattctttaaaataatgtattttgaaaaaatcgatatgaataagataacntttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90374" stop="88470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90074" g_stop="89839" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89141" g_stop="88769" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="611" r_length="375" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U590160" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90074" e_stop="89839"/>
          <exon e_start="89141" e_stop="88769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACATTTTATTAGAACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATGGTAAATCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATGATATCAATATTGTGTAAGAAATATTGTGGATTAATTAGCACATAATTACAAATAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGCAAAAACAGAGAGTCTTCCACTATAAAAGAATGAGCGTACAAATAAGTAGTCACAATCCTACAAGGAATATGTTCTTTCCATTATTCCTATAAAAAATTATATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTTAAATTAATAGAGATTATGAGTTTCGTAAATATATAAGAGAAAAAATTCATGGCGTAATGAACAAATACTTCCTCTATGTAACAATAGTTGTGGAGTATACTAAAAATAGAAGTCTAACAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAATAAAATATAATAAAATCAAAGAATAATATAATAATATTATCTCTATTAGTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACTAACTCACTCAATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACAGATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTT-AAATAATGTATTTTGAAGAAATC-ATATGAATACGATAACATTTTTA</genome_strand>
        <mrna_strand>CNCACNCTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGGGGACTCTTTGAAAATATCGATAA-TATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACNTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95424" stop="96662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95724" g_stop="96363" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95724" e_stop="96363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATGGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGTGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGGCTCGTTTAATTGCTAAAGGCTACAATCAGGAGTATGGGTTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583883" ref_strand="+" ref_description="SGN-U583883 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205247|gb|AAT39965.2| (e_value=3e-11) hypothetical; ">
      <seq>tatgcgtcaactagccagagttcaagaaatcccacccaatgatgatatgagtaagtttgcatatgacactccaccaagttttgcttttaacagcgaagagattatgaagatttggtacgggagtattatttctgagctaagtgaaatggttgtggagaaagataaaggaaaggtggttcctgggtacctatcgtggtttcgtgatccgatgacatttggtgacactcctgaaggatccagcagaaaaagaagagatcaacatataataagacaattgaaaaaagagttggagaaggccaaagcaaccattgcacggctagaagtacaagtccaaagaagaaaaaatcacaagttagagttgcaagatgtggaaggagaattgaagcatgcagagggaagactagcccgatttggaggaggaattggataatagaatccacttggcacgacagataaaaagggagcagaattttgagatctctcgattgaagaggggcttccaggcatccgaagaggcgcaaagacaattgatcatcgaaagagcaacacttcgccatcaacttgaagcagcagaagggcgagaggccctcttgaggaataatctgggtaatcatcaggctttgttaaatgactgtcatcaaaacatgggaagggctagacttcaagttcatcaactagcagagcaaacctcctatgttattagaaatcagcgccgtatgaatgatcaagaagtggttgagcaagaacggaccattgttccccatttgccgaaggtgtttctgaatttgtatgagaccttgggaggaaaaagaaagccccaagaaagtgatgaagattgaagaaaagttttagttgtttttgttgttcgtttcattttgtttgttgaaagacttagtttctagtttaaaatttggtgtttagggatattatgttgatccggttgttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="109292" stop="107744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108992" g_stop="108044" g_length="949"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="950" r_length="950" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U583883" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108992" e_stop="108044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAGGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCAAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGA-TTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGATCCGGTTGTTTTAAA</genome_strand>
        <mrna_strand>TATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAAGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCTAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGATTTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCCAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGATCCGGTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600702" ref_strand="+" ref_description="SGN-U600702 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtcccggtcttcttccccttactaccatgccgcctgccggccaccgctaccgccaccacgccgccggccagccacccctctttggtcggaattttttttaaaattttaccatcttttcctttcatcctcctctacctaaatctacaaacctttcatccatatctatagccaaactccgtagatctaaggaaaaccaaatataaatttttactttttccttagatttataaagttgcggtcattcctatcccaaaccctttacataaatgtgtagagctcttcaagggctatcatttgatataaatttaagttcaaaatccatcaaaaaaaattccggcaaagttttccggcgaccttcattacccgaaagatatgtcaatcttttcccccctctcaatctttatccaaattcatcattatctttttttttgtttgaccatataagtcgtttgatgtcggattatgttattaatgttctataagtttatcatgttgatgagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="-" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="113933" stop="112830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113633" g_stop="113130" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="-" ref_id="SGN-U600702" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113633" e_stop="113130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCTTTCTTCTTCCCCTTACTACCATGCCGCCTGCCGGCCACCGCTACCGCCACCACGCCGCCGGCCACCCACCCCTCTTTGGTCGGAATTTTTTTTAAAATTTTACCATCTTTTCCTTTCATCCTCCTCTACCTAAATCTACAAACCTTTCATCCATATCTATAGCCAAACTCCGTAGATCTAAGGAAAACCAAATATAAATTTTTACTTTTTCCTTAGATTTATAAAGTTCCGGTCATTCCTATCCCAAACCCTTTACATAAATGTGTAGAGCTCTTCAAGGGCTATCATTTGATATAAATTTAAGTTCAAAATCCATCAAAAAAATTTCCGGCAAAGTTTTCCGGCGACCTTCATTACCCGAAAGATATGTCAATCTTTTCCCCCCTCTCAATCTTTATCCAAATTCATCATTATCTTTTTTTTTGTTTGACCATATAAGTCGTTTGATGTCGGATTATGTTATTAATGTTCTATAAGTTTATCATGTTGATGAGTTGC</genome_strand>
        <mrna_strand>GTCCCGGTCTTCTTCCCCTTACTACCATGCCGCCTGCCGGCCACCGCTACCGCCACCACGCCGCCGGCCAGCCACCCCTCTTTGGTCGGAATTTTTTTTAAAATTTTACCATCTTTTCCTTTCATCCTCCTCTACCTAAATCTACAAACCTTTCATCCATATCTATAGCCAAACTCCGTAGATCTAAGGAAAACCAAATATAAATTTTTACTTTTTCCTTAGATTTATAAAGTTGCGGTCATTCCTATCCCAAACCCTTTACATAAATGTGTAGAGCTCTTCAAGGGCTATCATTTGATATAAATTTAAGTTCAAAATCCATCAAAAAAAATTCCGGCAAAGTTTTCCGGCGACCTTCATTACCCGAAAGATATGTCAATCTTTTCCCCCCTCTCAATCTTTATCCAAATTCATCATTATCTTTTTTTTTGTTTGACCATATAAGTCGTTTGATGTCGGATTATGTTATTAATGTTCTATAAGTTTATCATGTTGATGAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597665" ref_strand="+" ref_description="SGN-U597665 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggggggtaggtcgtcgccactaaatattgactaaccttgaattgccatatttacatgaaatttcaaatttatcaaagcttgaattccctgaaatttggaaacctgacctgccaactctaccaaagcctaaatttccagaattcccaaagccgagttttccgccatttcctaagtgaacttccaacatggccaaaactcgagattcttgtcatttctaagactgaattgtcaacattatcaaatcctaaaatccctcaagtgcctaaaaaaccatgagcgcgtggcatgtgaaatattctttgcctcattgaagtaacattgatcacatattttccctttgttgtgatacaatcatttcctcctctctattttgaaaggattatttatgtaattggtatgccatcaatttactaatataatgttcttgtatttctaatggcatagtacacaacatttatatactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="126026" stop="127088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126332" g_stop="126788" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="467" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U597665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126332" e_stop="126788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</genome_strand>
        <mrna_strand>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562683" ref_strand="+" ref_description="SGN-U562683 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gcaaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttaatggtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161F11-m8aJ2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161F11.2" temp_strand="+" temp_description="C05HBa0161F11.2  AC238745.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0161F11 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127093" stop="128289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127392" g_stop="127989" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161F11.2" gen_strand="+" ref_id="SGN-U562683" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161F11.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127392" e_stop="127989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTT-AT-GTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</genome_strand>
        <mrna_strand>GCAAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTAATGGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2714" PGL_stop="1904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2714" e_stop="2083"/>
            <exon e_start="1925" e_stop="1904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="2714" e_stop="2083" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2082" i_stop="1926" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1925" e_stop="1904" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2714" stop="2083"/>
              <exon start="1925" stop="1904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTATGTCCGAACTTCAAGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAACTCACCCTGAAATCTGATGCGATGAAGACTAGCTAGAGTTGCGGTTGAGTTGAAGATGACGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAGGGGTCAGTACAAAACACAAGTACTGAGTAGGTATCATCGGCCAACTAAAAATAGAAAGCAATATATATCAGATAATAAGGTAAAATCAACCATAACACTTAACAGGTAACAACAACAAGTACCATAACCATTGGCCACAACCCAAGCACATCTATGAGGTCTCAAGCCTCCACACCATACCCATTTGGGAATCAGGTTCATTAAATTGAGTATATTAATATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTCGGAACGTGACACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTATGTGCGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTCGGTTCGTGACACCCGATTCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTA : ACCTCATTCTTTTAGTTCATCA</gDNA_template>
            <first_frame> V  Y  V  R  T  S  R  H  Q  D  M  N  E  R  E  S  S  P  S  *  E  Q  *  L  T  L  K  S  D  A  M  K  T  S  *  S  C  G  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  E  N  I  Q  V  G  V  S  T  K  H  K  Y  *  V  G  I  I  G  Q  L  K  I  E  S  N  I  Y  Q  I  I  R  *  N  Q  P  *  H  L  T  G  N  N  N  K  Y  H  N  H  W  P  Q  P  K  H  I  Y  E  V  S  S  L  H  T  I  P  I  W  E  S  G  S  L  N  *  V  Y  *  Y  N  S  R  F  I  L  F  I  P  L  V  S  E  R  D  T  P  I  P  *  C  Y  V  S  V  R  D  T  R  S  P  N  T  M  C  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  M  C  R  F  V  T  P  D  S  L  I  L  C  V  G  S  *  H  P  I  H  * :   P  H  S  F  S  S  S </first_frame>
            <second_frame>  S  M  S  E  L  Q  D  I  K  T  *  M  R  E  N  P  V  R  A  R  N  N  N  S  P  *  N  L  M  R  *  R  L  A  R  V  A  V  E  L  K  M  T  V  R  L  L  H  S  T  N  N  K  E  K  T  Y  K  *  G  S  V  Q  N  T  S  T  E  *  V  S  S  A  N  *  K  *  K  A  I  Y  I  R  *  *  G  K  I  N  H  N  T  *  Q  V  T  T  T  S  T  I  T  I  G  H  N  P  S  T  S  M  R  S  Q  A  S  T  P  Y  P  F  G  N  Q  V  H  *  I  E  Y  I  N  I  I  Q  D  S  F  S  L  F  L  L  C  R  N  V  T  L  R  S  P  N  A  T  C  R  F  V  T  P  D  P  L  I  L  C  A  V  R  D  T  R  S  P  N  T  M  C  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T   : N  L  I  L  L  V  H   </second_frame>
            <third_frame>   L  C  P  N  F  K  T  S  R  H  E  *  E  R  I  Q  S  E  L  G  T  I  T  H  P  E  I  *  C  D  E  D  *  L  E  L  R  L  S  *  R  *  R  Y  V  C  C  T  P  Q  I  T  K  R  K  H  T  S  R  G  Q  Y  K  T  Q  V  L  S  R  Y  H  R  P  T  K  N  R  K  Q  Y  I  S  D  N  K  V  K  S  T  I  T  L  N  R  *  Q  Q  Q  V  P  *  P  L  A  T  T  Q  A  H  L  *  G  L  K  P  P  H  H  T  H  L  G  I  R  F  I  K  L  S  I  L  I  *  F  K  I  H  S  L  Y  S  S  C  V  G  T  *  H  S  D  P  L  M  L  R  V  G  S  *  H  P  I  P  *  Y  Y  V  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  S  V  R  D  T  R  F  P  N  T  M  C  R  F  V  T  P  D  P  L  :  T  S  F  F  *  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2332" stop="2132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEYINIIQDSFSLFLLCRNVTLRSPNATCRFVTPDPLILCAVRDTRSPNTMCRFVTPDPLILCVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14850" PGL_stop="15564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14850" e_stop="15564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="14850" e_stop="15564" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14850" stop="15564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTTGGGTTATGGGCCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTTCCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGGTCTTATTTTCATATACACAGAGAGTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAGCAGTTTTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGACTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGTACAGCATATTGTCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGTCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTTCTCATTGTTTGGCACTTGTTTTTTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTATGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGTGTATTCTTCCGCTATTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> N  C  W  V  M  G  L  F  P  F  L  C  G  *  I  K  V  Q  F  G  P  T  H  F  F  P  *  A  H  S  Y  E  A  N  I  S  L  F  R  S  Y  F  H  I  H  R  E  F  F  S  S  Q  K  E  R  K  R  A  V  F  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  V  Q  H  I  V  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  S  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  F  L  I  V  W  H  L  F  F  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V  S  Y  V  I  G  L  L  L  S  C  Y  I  C  L  V  E  L  L  V  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  R  R  E  S  I  D  L  C  I  L  P  L  L  S  C  Q  A  F  F  </first_frame>
            <second_frame>  I  V  G  L  W  A  F  F  P  S  Y  V  D  K  *  K  S  N  L  D  Q  P  I  F  S  H  R  P  I  L  M  R  Q  I  *  A  Y  L  G  L  I  F  I  Y  T  E  S  F  S  A  A  K  K  R  E  R  E  Q  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  T  P  A  S  F  L  V  R  L  S  *  F  L  Y  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  C  P  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  F  S  L  F  G  T  C  F  L  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  M  *  L  V  Y  Y  C  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  S  S  L  G  S  N  R  E  G  K  V  *  T  C  V  F  F  R  Y  Y  P  V  R  H  S  L </second_frame>
            <third_frame>   L  L  G  Y  G  P  F  S  L  P  M  W  I  N  K  S  P  I  W  T  N  P  F  F  P  I  G  P  F  L  *  G  K  Y  K  P  I  *  V  L  F  S  Y  T  Q  R  V  F  Q  Q  P  K  R  E  K  E  S  S  F  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  L  P  L  R  F  L  S  D  *  A  D  F  C  T  A  Y  C  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  V  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  S  H  C  L  A  L  V  F  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  V  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  L  L  L  V  Q  I  E  K  G  K  Y  R  L  V  Y  S  S  A  I  I  L  S  G  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15218" stop="15445"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNSLDLVQSYFVVSHCLALVFWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHVNLGVLCDWFIIVLLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18900" PGL_stop="21666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18900" e_stop="19250"/>
            <exon e_start="20392" e_stop="20502"/>
            <exon e_start="21245" e_stop="21666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18900" e_stop="19250" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19251" i_stop="20391" i_length="1141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20392" e_stop="20502" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="20503" i_stop="21244" i_length="742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21245" e_stop="21666" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18900" stop="19250"/>
              <exon start="20392" stop="20502"/>
              <exon start="21245" stop="21666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGAAACGGTTGCATTGAATCATTCTAATGTTAGGTGGTATGTTTTTGGAGATGATGATACGGTTTTTTTCACGGAGAATTTGTTGAAGACGCTATCGAAATATGATCACGGATTATGGTATTATATCGGATCGAATTCGGAACATTTTTTGATGAATAAAGCTTTTTCGTATGAAATGGCGTTTGGTGGTGCTGGAATTGCTATAAGTTCTCCGTTAGCTAAAGTTCTTGGAAAAGTGTTTGATGCATGTATCGAAAGGTACCCTCACCTTTTTGGTAGTGATGCTAGGATTTATTCATGTTTGGCTGAACTTGGTGTTGGGTTAACCCATGAACCCGGTTTTCATCAG : ACTATTTACAGGAAAAAGACCCCTGAGAATTGTACTATCACAATGGTGTCACCTAGAAGACTAGAAGAAATCAGAGTTGTTTCACAAAAGTTAGAAATCGACAGAAATCGG : TTGCTATCACCAAGAAGACAATGTTGTGATGTGTTACCATCTACATCAAGAAATGTTATGGATGTCGCGATAAGAGAATGCAAAGAAGACGAACTGATATTCATACATCCTTAGTTGTGGTGACATTCAACAAGTTGATATTTGATGGCAAATTGGTGATGGGATATGAAGGATTTATAAGAACAGAGGATTTTCGCGGTTATCCCCAATTAAGCCAATACTATTTTGCTTTCTCTAAGCATAACATCTACTCTCCTTTGCTTGTGAAGTTGATTTAGGAAAGCAGTTTAGGAAATTTAAGTATGAACTTAGTAGGATTAGAGTGTACTTAAGGAAAATGGAATTATAATTATATAGTATGTAACTACAAAGCTATGCACATCTGCATAAGCAATCAAATGTGAAGAAACTTGGGAGTTAAT</gDNA_template>
            <first_frame> T  E  T  V  A  L  N  H  S  N  V  R  W  Y  V  F  G  D  D  D  T  V  F  F  T  E  N  L  L  K  T  L  S  K  Y  D  H  G  L  W  Y  Y  I  G  S  N  S  E  H  F  L  M  N  K  A  F  S  Y  E  M  A  F  G  G  A  G  I  A  I  S  S  P  L  A  K  V  L  G  K  V  F  D  A  C  I  E  R  Y  P  H  L  F  G  S  D  A  R  I  Y  S  C  L  A  E  L  G  V  G  L  T  H  E  P  G  F  H  Q  :  T  I  Y  R  K  K  T  P  E  N  C  T  I  T  M  V  S  P  R  R  L  E  E  I  R  V  V  S  Q  K  L  E  I  D  R  N  R  :  L  L  S  P  R  R  Q  C  C  D  V  L  P  S  T  S  R  N  V  M  D  V  A  I  R  E  C  K  E  D  E  L  I  F  I  H  P  *  L  W  *  H  S  T  S  *  Y  L  M  A  N  W  *  W  D  M  K  D  L  *  E  Q  R  I  F  A  V  I  P  N  *  A  N  T  I  L  L  S  L  S  I  T  S  T  L  L  C  L  *  S  *  F  R  K  A  V  *  E  I  *  V  *  T  *  *  D  *  S  V  L  K  E  N  G  I  I  I  I  *  Y  V  T  T  K  L  C  T  S  A  *  A  I  K  C  E  E  T  W  E  L   </first_frame>
            <second_frame>  R  K  R  L  H  *  I  I  L  M  L  G  G  M  F  L  E  M  M  I  R  F  F  S  R  R  I  C  *  R  R  Y  R  N  M  I  T  D  Y  G  I  I  S  D  R  I  R  N  I  F  *  *  I  K  L  F  R  M  K  W  R  L  V  V  L  E  L  L  *  V  L  R  *  L  K  F  L  E  K  C  L  M  H  V  S  K  G  T  L  T  F  L  V  V  M  L  G  F  I  H  V  W  L  N  L  V  L  G  *  P  M  N  P  V  F  I  R :   L  F  T  G  K  R  P  L  R  I  V  L  S  Q  W  C  H  L  E  D  *  K  K  S  E  L  F  H  K  S  *  K  S  T  E  I  G :   C  Y  H  Q  E  D  N  V  V  M  C  Y  H  L  H  Q  E  M  L  W  M  S  R  *  E  N  A  K  K  T  N  *  Y  S  Y  I  L  S  C  G  D  I  Q  Q  V  D  I  *  W  Q  I  G  D  G  I  *  R  I  Y  K  N  R  G  F  S  R  L  S  P  I  K  P  I  L  F  C  F  L  *  A  *  H  L  L  S  F  A  C  E  V  D  L  G  K  Q  F  R  K  F  K  Y  E  L  S  R  I  R  V  Y  L  R  K  M  E  L  *  L  Y  S  M  *  L  Q  S  Y  A  H  L  H  K  Q  S  N  V  K  K  L  G  S  *  </second_frame>
            <third_frame>   G  N  G  C  I  E  S  F  *  C  *  V  V  C  F  W  R  *  *  Y  G  F  F  H  G  E  F  V  E  D  A  I  E  I  *  S  R  I  M  V  L  Y  R  I  E  F  G  T  F  F  D  E  *  S  F  F  V  *  N  G  V  W  W  C  W  N  C  Y  K  F  S  V  S  *  S  S  W  K  S  V  *  C  M  Y  R  K  V  P  S  P  F  W  *  *  C  *  D  L  F  M  F  G  *  T  W  C  W  V  N  P  *  T  R  F  S  S   : D  Y  L  Q  E  K  D  P  *  E  L  Y  Y  H  N  G  V  T  *  K  T  R  R  N  Q  S  C  F  T  K  V  R  N  R  Q  K  S   : V  A  I  T  K  K  T  M  L  *  C  V  T  I  Y  I  K  K  C  Y  G  C  R  D  K  R  M  Q  R  R  R  T  D  I  H  T  S  L  V  V  V  T  F  N  K  L  I  F  D  G  K  L  V  M  G  Y  E  G  F  I  R  T  E  D  F  R  G  Y  P  Q  L  S  Q  Y  Y  F  A  F  S  K  H  N  I  Y  S  P  L  L  V  K  L  I  *  E  S  S  L  G  N  L  S  M  N  L  V  G  L  E  C  T  *  G  K  W  N  Y  N  Y  I  V  C  N  Y  K  A  M  H  I  C  I  S  N  Q  M  *  R  N  L  G  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18900" stop="19250"/>
                    <exon start="20392" stop="20502"/>
                    <exon start="21245" stop="21358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TETVALNHSNVRWYVFGDDDTVFFTENLLKTLSKYDHGLWYYIGSNSEHFLMNKAFSYEMAFGGAGIAISSPLAKVLGKVFDACIERYPHLFGSDARIYSCLAELGVGLTHEPGFHQTIYRKKTPENCTITMVSPRRLEEIRVVSQKLEIDRNRLLSPRRQCCDVLPSTSRNVMDVAIRECKEDELIFIHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32630" PGL_stop="31681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32630" e_stop="32430"/>
            <exon e_start="31872" e_stop="31681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32630" e_stop="32430" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32429" i_stop="31873" i_length="557"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="31872" e_stop="31681" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32630" stop="32430"/>
              <exon start="31872" stop="31681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599418" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACATGTGACATTATGGTTGTTTGAGTGTAACAAGCCAAGTCATGAGGCATTTGTTTTAGGGTTAGCTGCTGCAACTCTACTTGGAGTAGCTCATGTTCTAGCCAACCTTGTTGGAGGCTGTAGTGTTTGTAGTAATGATGATATTCGAAAAGCAACACCAATCAAGCAATTATCAATTGCTTGTCTTGTTTTCACATG : GATCATATTTGCAGCAGGATTGAGTACATTGGTGATTGGGACAAAGGGAAACCACAAGTCAAGAACATCATGTGGTTATTTACATCATAATTACCTATCCATTGGTGGAATTCTTTGTTTTGTTCATGCTTTACTTTCTGTTGCGTATTATGTTGCAGCTAGTCAAAATCTAGCTTAACTTTTCACTTTTAC</gDNA_template>
            <first_frame> K  T  C  D  I  M  V  V  *  V  *  Q  A  K  S  *  G  I  C  F  R  V  S  C  C  N  S  T  W  S  S  S  C  S  S  Q  P  C  W  R  L  *  C  L  *  *  *  *  Y  S  K  S  N  T  N  Q  A  I  I  N  C  L  S  C  F  H  M  :  D  H  I  C  S  R  I  E  Y  I  G  D  W  D  K  G  K  P  Q  V  K  N  I  M  W  L  F  T  S  *  L  P  I  H  W  W  N  S  L  F  C  S  C  F  T  F  C  C  V  L  C  C  S  *  S  K  S  S  L  T  F  H  F  Y </first_frame>
            <second_frame>  K  H  V  T  L  W  L  F  E  C  N  K  P  S  H  E  A  F  V  L  G  L  A  A  A  T  L  L  G  V  A  H  V  L  A  N  L  V  G  G  C  S  V  C  S  N  D  D  I  R  K  A  T  P  I  K  Q  L  S  I  A  C  L  V  F  T  W :   I  I  F  A  A  G  L  S  T  L  V  I  G  T  K  G  N  H  K  S  R  T  S  C  G  Y  L  H  H  N  Y  L  S  I  G  G  I  L  C  F  V  H  A  L  L  S  V  A  Y  Y  V  A  A  S  Q  N  L  A  *  L  F  T  F   </second_frame>
            <third_frame>   N  M  *  H  Y  G  C  L  S  V  T  S  Q  V  M  R  H  L  F  *  G  *  L  L  Q  L  Y  L  E  *  L  M  F  *  P  T  L  L  E  A  V  V  F  V  V  M  M  I  F  E  K  Q  H  Q  S  S  N  Y  Q  L  L  V  L  F  S  H   : G  S  Y  L  Q  Q  D  *  V  H  W  *  L  G  Q  R  E  T  T  S  Q  E  H  H  V  V  I  Y  I  I  I  T  Y  P  L  V  E  F  F  V  L  F  M  L  Y  F  L  L  R  I  M  L  Q  L  V  K  I  *  L  N  F  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32629" stop="32430"/>
                    <exon start="31872" stop="31695"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHVTLWLFECNKPSHEAFVLGLAAATLLGVAHVLANLVGGCSVCSNDDIRKATPIKQLSIACLVFTWIIFAAGLSTLVIGTKGNHKSRTSCGYLHHNYLSIGGILCFVHALLSVAYYVAASQNLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43973" PGL_stop="39243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43973" e_stop="43731"/>
            <exon e_start="43460" e_stop="43280"/>
            <exon e_start="39319" e_stop="39243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.000" e_score="0.930"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.901"/>
          <exon-only e_score="0.805"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="43973" e_stop="43731" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43730" i_stop="43461" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="43460" e_stop="43280" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43279" i_stop="39320" i_length="3960"/>
          </intron>
          <exon e_serial="3" e_score="0.805">
            <gDNA_exon_boundary e_start="39319" e_stop="39243" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43973" stop="43731"/>
              <exon start="43460" stop="43280"/>
              <exon start="39319" stop="39243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTAATACTTATTATTATAATAAACTTTGTGATATATTATATCATAGAAAAAAAATGAGTCTTCAAGGAAAGTTGATTTCTGAGATAAATATCAAATGTAATGGAGATGTGTTTCATGAAATAATTAAGTAGAAACCACATGATATCTTTAGTATATGCTCTGATAAGATACAAAATATGGATATTCATGAAGGTGAATTAGGCAATATTGGTTCTATCAAATCCTGGAAATTAACCTATG : TACTACATTTTTTTGCAGGTGGGAAAGAGATTTTTTGTAAAGTAAGTAATTGAAGAAATAGATGATGAAAAGAAGTTGATTAAAAAAAAGCTAATTGAAGGTGATTTATTGGAGTATTATAAATCATTTTATGCCACTATTCATGTTGAGACAAAGGGTGAAAACAACTTAGTTACTTTGG : ATCATGGAATATGAAAAGAAGAATGTGAATGTGCCTGATCCACACACTTTAATGGAATTATGCATCAATGTCACTAA</gDNA_template>
            <first_frame> H  L  I  L  I  I  I  I  N  F  V  I  Y  Y  I  I  E  K  K  *  V  F  K  E  S  *  F  L  R  *  I  S  N  V  M  E  M  C  F  M  K  *  L  S  R  N  H  M  I  S  L  V  Y  A  L  I  R  Y  K  I  W  I  F  M  K  V  N  *  A  I  L  V  L  S  N  P  G  N  *  P  M  :  Y  Y  I  F  L  Q  V  G  K  R  F  F  V  K  *  V  I  E  E  I  D  D  E  K  K  L  I  K  K  K  L  I  E  G  D  L  L  E  Y  Y  K  S  F  Y  A  T  I  H  V  E  T  K  G  E  N  N  L  V  T  L   : D  H  G  I  *  K  E  E  C  E  C  A  *  S  T  H  F  N  G  I  M  H  Q  C  H  * </first_frame>
            <second_frame>  T  *  Y  L  L  L  *  *  T  L  *  Y  I  I  S  *  K  K  N  E  S  S  R  K  V  D  F  *  D  K  Y  Q  M  *  W  R  C  V  S  *  N  N  *  V  E  T  T  *  Y  L  *  Y  M  L  *  *  D  T  K  Y  G  Y  S  *  R  *  I  R  Q  Y  W  F  Y  Q  I  L  E  I  N  L  C :   T  T  F  F  C  R  W  E  R  D  F  L  *  S  K  *  L  K  K  *  M  M  K  R  S  *  L  K  K  S  *  L  K  V  I  Y  W  S  I  I  N  H  F  M  P  L  F  M  L  R  Q  R  V  K  T  T  *  L  L  W  :  I  M  E  Y  E  K  K  N  V  N  V  P  D  P  H  T  L  M  E  L  C  I  N  V  T   </second_frame>
            <third_frame>   P  N  T  Y  Y  Y  N  K  L  C  D  I  L  Y  H  R  K  K  M  S  L  Q  G  K  L  I  S  E  I  N  I  K  C  N  G  D  V  F  H  E  I  I  K  *  K  P  H  D  I  F  S  I  C  S  D  K  I  Q  N  M  D  I  H  E  G  E  L  G  N  I  G  S  I  K  S  W  K  L  T  Y   : V  L  H  F  F  A  G  G  K  E  I  F  C  K  V  S  N  *  R  N  R  *  *  K  E  V  D  *  K  K  A  N  *  R  *  F  I  G  V  L  *  I  I  L  C  H  Y  S  C  *  D  K  G  *  K  Q  L  S  Y  F  G :   S  W  N  M  K  R  R  M  *  M  C  L  I  H  T  L  *  W  N  Y  A  S  M  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161F11.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39894" PGL_stop="40357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39894" e_stop="40357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39894" e_stop="40357" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39894" stop="40357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCGTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATATAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</gDNA_template>
            <first_frame> Y  N  L  Y  H  L  V  I  W  C  I  S  E  E  E  S  S  S  N  F  K  F  R  H  Q  Y  F  N  F  H  Y  N  R  L  F  L  Y  K  R  L  V  T  S  F  H  S  L  I  L  Y  L  F  F  V  F  I  I  *  L  V  S  C  S  C  *  V  S  Y  F  I  I  Y  N  F  I  S  W  S  L  L  K  K  V  E  V  K  K  V  *  *  N  Q  *  K  N  *  L  K  K  L  T  K  V  L  V  R  L  N  L  K  F  L  L  L  E  *  I  *  M  N  L  R  M  *  M  K  L  V  F  P  V  P  V  L  *  I  L  I  Q  I  V  R  L  P  M  N  S  M  K  D  I  M  V  L   </first_frame>
            <second_frame>  I  T  Y  I  I  W  S  F  G  V  F  R  R  R  N  R  L  Q  I  S  S  F  D  I  N  I  L  I  F  I  I  I  V  C  S  Y  T  N  V  W  *  L  R  S  T  L  *  S  Y  I  Y  F  L  Y  L  L  F  N  L  *  V  V  L  V  K  F  R  I  L  *  F  I  I  L  Y  H  G  V  F  *  K  K  W  K  *  K  R  S  S  R  I  S  K  K  I  S  *  K  N  *  Q  R  C  *  F  V  *  I  *  N  S  S  C  *  N  K  Y  R  *  I  Y  A  C  E  *  N  *  F  F  P  S  R  S  Y  K  Y  *  F  R  *  S  D  S  P  *  T  L  *  K  I  L  W  Y  *  </second_frame>
            <third_frame>   *  L  I  S  F  G  H  L  V  Y  F  G  G  G  I  V  F  K  F  Q  V  S  T  S  I  F  *  F  S  L  *  S  F  V  L  I  Q  T  F  G  N  F  V  P  L  S  N  L  I  F  I  F  C  I  Y  Y  L  T  C  K  L  F  L  L  S  F  V  F  Y  N  L  *  F  Y  I  M  E  S  S  K  K  S  G  S  K  K  G  L  V  E  S  V  K  K  L  V  K  K  T  N  K  G  A  S  S  S  K  S  K  I  P  L  V  R  I  N  I  D  E  F  T  H  V  N  E  T  S  F  S  R  P  G  P  I  N  I  N  S  D  S  P  T  P  H  E  L  Y  E  R  Y  Y  G  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40112" stop="40357"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYIMESSKKSGSKKGLVESVKKLVKKTNKGASSSKSKIPLVRINIDEFTHVNETSFSRPGPININSDSPTPHELYERYYGIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58183" PGL_stop="58673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58183" e_stop="58673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="58183" e_stop="58673" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58183" stop="58673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTGTCTGATATGATGGAGAGTGGAACCCCATGCAACTGAACAATTTCTGATACATAGATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCAACAATGTCGCGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTGACGGTACATCTTGGTTGCACCAGGATGTATAGAATATCCGGAACTATGAGCCTCTGTAAGGATGGTGTGGATCAAATCATCAACACGGG</gDNA_template>
            <first_frame> T  *  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  V  *  Y  D  G  E  W  N  P  M  Q  L  N  N  F  *  Y  I  D  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  P  I  N  N  H  P  N  R  V  I  L  T  Q  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  I  W  T  F  G  N  K  I  N  N  V  A  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  S  G  T  M  S  L  C  K  D  G  V  D  Q  I  I  N  T   </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  *  T  I  S  D  T  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  N  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  *  R  Y  I  L  V  A  P  G  C  I  E  Y  P  E  L  *  A  S  V  R  M  V  W  I  K  S  S  T  R  </second_frame>
            <third_frame>   L  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  C  L  I  *  W  R  V  E  P  H  A  T  E  Q  F  L  I  H  R  F  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  *  S  H  T  Y  P  M  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  S  G  V  H  T  L  L  A  D  N  L  D  I  W  Q  Q  N  Q  Q  C  R  A  S  F  Y  S  T  K  S  V  A  L  G  D  G  T  S  W  L  H  Q  D  V  *  N  I  R  N  Y  E  P  L  *  G  W  C  G  S  N  H  Q  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58380" stop="58616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYPMSLEDQPRSPLQFSPTSIQEWAFSEVFLRASGVHTLLADNLDIWQQNQQCRASFYSTKSVALGDGTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58357" stop="58581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNRVILTQCLWKTNHEVHCNSLPLPFRNGHSLKCSSGPLVFILYLLTIWTFGNKINNVALHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="59448" PGL_stop="60260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59448" e_stop="60260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="59448" e_stop="60260" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59448" stop="60260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGATGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATATACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTTCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTAAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCAAACAAGTCATCTATGCGAGGAATGGGATACTTGTTGTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCTAAAACTCCCATCCTTTTTCTTCACAAATAATACCGGAGCACCCCAAGGAGATGCACTTGTTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGGTTCAAGATCAATGTAGAAGTCGATGTCTCTCTCCGGTGGCATACCCGGAAGGTCTT</gDNA_template>
            <first_frame> R  I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  I  P  S  P  H  P  S  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  *  T  F  P  I  P  F  S  N  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  L  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  Q  T  S  H  L  C  E  E  W  D  T  C  C  *  *  L  P  C  S  T  A  D  S  L  C  T  S  *  N  S  H  P  F  S  S  Q  I  I  P  E  H  P  K  E  M  H  L  F  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R  D  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  R  C  L  S  P  V  A  Y  P  E  G  L </first_frame>
            <second_frame>  E  S  L  D  K  S  M  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  Y  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  F  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  K  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  K  Q  V  I  Y  A  R  N  G  I  L  V  V  N  S  Y  L  V  Q  L  P  I  V  Y  A  H  P  K  T  P  I  L  F  L  H  K  *  Y  R  S  T  P  R  R  C  T  C  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  I  H  S  I  R  G  Y  R  N  G  V  S  T  R  F  K  I  N  V  E  V  D  V  S  L  R  W  H  T  R  K  V   </second_frame>
            <third_frame>   N  P  L  T  N  R  W  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  Y  T  I  T  P  S  F  E  T  T  C  P  K  K  D  T  S  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  L  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  L  L  I  V  T  L  F  N  C  R  *  S  M  H  I  L  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  V  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  G  S  I  L  *  G  G  I  E  M  G  *  V  P  G  S  R  S  M  *  K  S  M  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59713" stop="59952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGIRKTKRHYYKFVMPIPSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59645" stop="59842"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62127" PGL_stop="59577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62127" e_stop="61254"/>
            <exon e_start="60138" e_stop="59577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="62127" e_stop="61254" e_length="874"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61253" i_stop="60139" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="60138" e_stop="59577" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62127" stop="61254"/>
              <exon start="60138" stop="59577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62093" stop="61539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCATCTGATAATAGCGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACATAATGAGGAATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATACGGCTACTGTGGCTCCCCGCATGGATGCCCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACCGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGAGATAGGAAAAGATATAAGTTCTTGTGCCTAGAGCAAGGTAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTATTTCAGTCCACAAGAGCGAATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCAGCCTTATAGGTAGCGGCTACGGCGAAATCTTTTCAAGAAGTGGTAGACATCGTGATAGAGGTAGAGGGAGTGAAGA : GCACAACTTCAAGAGTTGCTAAGCAAAGGCTTTATTAGAACAAGTGCATCTCCTTGGGGTGCTCCGGTATTATTTGTGAAGAAAAAGGATGGGAGTTTTAGGATGTGCATAGACTATCGGCAGTTGAACAAGGTAACTATTAACAACAAGTATCCCATTCCTCGCATAGATGACTTGTTTGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATAAGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACTAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATCTGGATCTCTTTGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTTAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATGAAGTGTCCTTCTTGGGGCATGTGGTTTCGA</gDNA_template>
            <first_frame> S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  S  D  N  S  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  H  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  T  A  T  V  A  P  R  M  D  A  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  Y  K  F  L  C  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  *  V  A  A  T  A  K  S  F  Q  E  V  V  D  I  V  I  E  V  E  G  V  K   : S  T  T  S  R  V  A  K  Q  R  L  Y  *  N  K  C  I  S  L  G  C  S  G  I  I  C  E  E  K  G  W  E  F  *  D  V  H  R  L  S  A  V  E  Q  G  N  Y  *  Q  Q  V  S  H  S  S  H  R  *  L  V  *  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  K  G  N  G  C  A  K  D  C  F  S  N  *  V  W  A  L  R  I  C  S  N  V  F  W  S  Y  E  C  P  C  C  F  H  E  L  D  E  R  D  F  *  A  I  S  G  S  L  C  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  G  A  F  E  N  G  I  G  N  V  *  G  E  K  A  L  C  Q  I  L  Q  V  *  V  L  A  R  *  S  V  L  L  G  A  C  G  F   </first_frame>
            <second_frame>  R  G  R  T  S  S  R  G  R  G  R  A  P  S  H  L  I  I  A  Q  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  I  M  R  N  C  L  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  I  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  R  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  P  R  H  H  L  *  L  G  H  H  S  L  A  C  L  W  R  S  I  S  P  G  L  *  E  I  G  K  D  I  S  S  C  A  *  S  K  V  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  I  S  V  H  K  S  E  F  V  V  L  *  R  G  *  D  Q  S  C  E  F  Q  P  Y  R  *  R  L  R  R  N  L  F  K  K  W  *  T  S  *  *  R  *  R  E  *  R  :  A  Q  L  Q  E  L  L  S  K  G  F  I  R  T  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  N  N  K  Y  P  I  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  F  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  E  V  S  F  L  G  H  V  V  S  </second_frame>
            <third_frame>   V  G  G  R  P  L  E  E  E  D  E  H  L  A  I  *  *  *  R  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  *  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  Y  G  Y  C  G  S  P  H  G  C  P  I  G  N  R  H  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  M  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  R  *  E  K  I  *  V  L  V  P  R  A  R  *  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  N  S  S  F  C  E  G  V  E  I  R  V  A  N  F  S  L  I  G  S  G  Y  G  E  I  F  S  R  S  G  R  H  R  D  R  G  R  G  S  E  E :   H  N  F  K  S  C  *  A  K  A  L  L  E  Q  V  H  L  L  G  V  L  R  Y  Y  L  *  R  K  R  M  G  V  L  G  C  A  *  T  I  G  S  *  T  R  *  L  L  T  T  S  I  P  F  L  A  *  M  T  C  L  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  *  G  Q  R  M  C  Q  R  L  L  F  E  L  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  L  S  *  A  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  R  S  I  *  E  W  Y  W  K  C  L  G  R  K  S  F  M  P  N  S  P  S  V  S  F  G  *  M  K  C  P  S  W  G  M  W  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62085" stop="61321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDNSAVTPPPTEEVVREGEEGETEQVHNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQHTATVAPRMDAPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRYKFLCLEQGRMSVTAYEAKFRALSRYATQLYFSPQERIRRFVKGLRSELRISAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61256" stop="61254"/>
                    <exon start="60138" stop="59578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQLQELLSKGFIRTSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTINNKYPIPRIDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILVYSKSKKEHEEHLRMVLEMFREKKLYAKFSKCEFWLDEVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60439" PGL_stop="60764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60439" e_stop="60764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="60439" e_stop="60764" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60439" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCTGTCCCAGGCTTGGATAACGTCACAGTTTTAGCATTACAATCAAAAAATGCAAAATTCGGAGAAAGCCAAATCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGAAAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAATCCATGCAATCAC</gDNA_template>
            <first_frame> W  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  K  K  C  K  I  R  R  K  P  N  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  M  S  I  S  L  H  K  S  H  R  K  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  *  F  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  V  K  *  Y  K  I  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  D  N  V  T  V  L  A  L  Q  S  K  N  A  K  F  G  E  S  Q  I  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  S  I  K  V  T  G  K  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  N  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  K  S  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  I  T  S  Q  F  *  H  Y  N  Q  K  M  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  *  K  S  Q  E  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  I  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  G  Q  I  I  Q  N  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60572" stop="60763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLSIKVTGKDLYTFSTITDSPTGVETRIGMSSNSQFNLRPVANEEDTYENVDPGSNNTKSMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="66153" PGL_stop="66930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66153" e_stop="66930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="66153" e_stop="66930" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66153" stop="66930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATTTGATACTGGTGCCGCCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGAAATGGATGTCATCGGTCCTATAGAGCCGGCCGCTTTTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCAGTAACCAAAAAAGTGGTGGCCGATTTTGTCCGCAACAATCTGATATGCAGATTCGGGGTTCCAGAATTCATCATTACCGATAACGGTGCAAATCTCAACAGCCATTTGATGAAAGAGATATGTGAACAATTTAAGATTATTCATTGAAGGTCAACTGCTTATCACCCCCAAATGAACGGAGCTGTAGAGGACGCCAACAAGAACATCAAAAAGATTTTGAGGAAAATGATTGACAAACAGCGAGGTTGACATGAAATTTTGCCATATGCTCTACCGTGTTATCAAACGACGGTCAAAACATCGACTGGGGCTACTCCATACTTGCTGGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCATCCTTAAGGATCATCCAAGAAGCGGAGTTAAGCAACGCTGAGTGGGTTAGCAAATGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCGCCGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGTGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTCAAGCGCATTTTCCTCATCAAGACGAGTACAAAGGAA</gDNA_template>
            <first_frame> R  F  D  T  G  A  A  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  G  R  F  *  W  T  Q  I  H  F  G  C  H  *  L  F  H  Q  V  G  G  S  S  L  L  Q  V  S  N  Q  K  S  G  G  R  F  C  P  Q  Q  S  D  M  Q  I  R  G  S  R  I  H  H  Y  R  *  R  C  K  S  Q  Q  P  F  D  E  R  D  M  *  T  I  *  D  Y  S  L  K  V  N  C  L  S  P  P  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  K  D  F  E  E  N  D  *  Q  T  A  R  L  T  *  N  F  A  I  C  S  T  V  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  G  I  W  N  R  G  S  R  A  C  *  S  R  D  T  I  L  K  D  H  P  R  S  G  V  K  Q  R  *  V  G  *  Q  M  D  *  S  T  S  F  D  *  *  E  E  N  G  R  R  L  P  W  P  V  V  *  T  K  N  D  S  C  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  Q  A  H  F  P  H  Q  D  E  Y  K  G  </first_frame>
            <second_frame>  D  L  I  L  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  E  M  D  V  I  G  P  I  E  P  A  A  F  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  F  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  *  R  S  T  A  Y  H  P  Q  M  N  G  A  V  E  D  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  *  H  E  I  L  P  Y  A  L  P  C  Y  Q  T  T  V  K  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  W  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  L  I  K  T  S  T  K  E </second_frame>
            <third_frame>   I  *  Y  W  C  R  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  K  W  M  S  S  V  L  *  S  R  P  L  L  M  D  T  D  S  F  W  L  P  L  I  I  S  P  S  G  W  K  Q  P  L  T  S  Q  *  P  K  K  W  W  P  I  L  S  A  T  I  *  Y  A  D  S  G  F  Q  N  S  S  L  P  I  T  V  Q  I  S  T  A  I  *  *  K  R  Y  V  N  N  L  R  L  F  I  E  G  Q  L  L  I  T  P  K  *  T  E  L  *  R  T  P  T  R  T  S  K  R  F  *  G  K  *  L  T  N  S  E  V  D  M  K  F  C  H  M  L  Y  R  V  I  K  R  R  S  K  H  R  L  G  L  L  H  T  C  W  Y  M  E  Q  R  Q  S  C  L  L  K  S  R  Y  H  P  *  G  S  S  K  K  R  S  *  A  T  L  S  G  L  A  N  G  L  I  N  *  L  *  L  M  R  R  E  W  S  P  F  A  M  A  S  C  I  D  K  E  *  L  V  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  S  S  A  F  S  S  S  R  R  V  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66580" stop="66930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEILPYALPCYQTTVKTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKWIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFLIKTSTKE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66154" stop="66477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLILVPPHELNAMSSPWPFVAWEMDVIGPIEPAAFNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPEFIITDNGANLNSHLMKEICEQFKIIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="90078" PGL_stop="88443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90078" e_stop="89839"/>
            <exon e_start="89141" e_stop="88569"/>
            <exon e_start="88463" e_stop="88443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90078" e_stop="89839" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89838" i_stop="89142" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="89141" e_stop="88569" e_length="573"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88568" i_stop="88464" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="88463" e_stop="88443" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90078" stop="89839"/>
              <exon start="89141" stop="88569"/>
              <exon start="88463" stop="88443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90074" stop="89839"/>
              <exon start="89141" stop="88769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACCACACACATTTTATTAGAACTTTGTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATCCATG : ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAACAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGGGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTAATCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCAAATTCTTTAAATAATGTATTTTGAAGAAATCATATGAATACGATAACATTTTTAAATAGTTAAAACAATGTATACCAAATGCTTGGATTTAAGCTGTTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGATGTGCTTTGAAATGTCTTGTAACAAAAATAAAACGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAGGTTGTTATTTGAATTGCACTATATTTTTTTTTCTTTTTTTTA : ATAGATAAATAAAAAATAAAA</gDNA_template>
            <first_frame> E  P  H  T  F  Y  *  N  F  V  I  Y  H  I  I  E  E  K  *  A  S  M  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  H  T  I  S  P  P  C  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  L  L  S  F  G  T  S  S  M  :  M  E  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  T  S  *  L  K  K  R  *  L  K  E  I  Y  W  S  I  T  N  H  F  T  S  L  F  M  L  R  Q  R  G  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  W  N  *  S  S  M  *  P  K  I  L  R  I  T  T  S  S  N  T  *  I  L  Y  T  R  T  L  *  K  C  R  Q  V  Y  V  K  F  F  K  *  C  I  L  K  K  S  Y  E  Y  D  N  I  F  K  *  L  K  Q  C  I  P  N  A  W  I  *  A  V  V  S  K  S  C  N  N  M  C  C  Y  *  R  M  C  F  E  M  S  C  N  K  N  K  T  S  G  Y  L  I  F  I  D  K  *  K  I  K  V  V  I  *  I  A  L  Y  F  F  F  F  F  L  :  I  D  K  *  K  I  K </first_frame>
            <second_frame>  N  H  T  H  F  I  R  T  L  *  Y  I  I  S  *  K  K  N  E  P  P  W  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  T  P  Y  L  H  H  V  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  C  Y  L  L  E  L  H  P  * :   W  K  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  Q  A  N  *  K  K  D  N  *  R  R  Y  I  G  V  L  Q  I  I  L  H  H  C  S  C  *  D  K  G  G  K  *  F  S  Y  F  D  H  R  I  *  K  E  K  C  *  C  A  R  S  T  H  I  H  G  I  N  P  Q  C  N  Q  R  Y  *  E  L  P  H  Q  V  I  H  K  Y  Y  T  Q  G  L  F  E  N  V  D  K  Y  M  S  N  S  L  N  N  V  F  *  R  N  H  M  N  T  I  T  F  L  N  S  *  N  N  V  Y  Q  M  L  G  F  K  L  L  S  Q  S  L  V  I  I  C  V  V  I  S  G  C  A  L  K  C  L  V  T  K  I  K  R  A  D  I  *  F  L  *  I  N  K  K  *  R  L  L  F  E  L  H  Y  I  F  F  S  F  F  * :   *  I  N  K  K  *   </second_frame>
            <third_frame>   T  T  H  I  L  L  E  L  C  D  I  S  Y  H  R  R  K  M  S  L  H  G  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  H  H  I  S  T  M  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  N  K  L  I  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  V  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  N  V  P  D  P  H  T  F  M  E  L  I  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  H  K  D  S  L  K  M  S  T  S  I  C  Q  I  L  *  I  M  Y  F  E  E  I  I  *  I  R  *  H  F  *  I  V  K  T  M  Y  T  K  C  L  D  L  S  C  C  L  K  V  L  *  *  Y  V  L  L  L  A  D  V  L  *  N  V  L  *  Q  K  *  N  E  R  I  S  N  F  Y  R  *  I  K  N  K  G  C  Y  L  N  C  T  I  F  F  F  L  F  F   : N  R  *  I  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90076" stop="89839"/>
                    <exon start="89141" stop="88876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTHILLELCDISYHRRKMSLHGKLVSEIEIKCDGDIFYEVYRHRPHHISTMSPNNIQNVDVHEGEWGTVDSVIFWNFIHDGKEVVAKEKVEEIDEENKLIKKKIIEGDILEYYKSFYITVHVETKGENNLVTLIIEYEKKNANVPDPHTFMELILNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="95724" PGL_stop="96363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95724" e_stop="96363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="95724" e_stop="96363" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95724" stop="96363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATGGTGAACCAACAACCTACTATGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGTGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGGCTCGTTTAATTGCTAAAGGCTACAATCAGGAGTATGGGTTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  M  V  N  Q  Q  P  T  M  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  V  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  G  T  R  L  V  *  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  W  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  C  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  *  Q  Y  F  Q  V  Q  G  S  F  N  C  *  R  L  Q  S  G  V  W  V  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  G  E  P  T  T  Y  Y  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  C  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  A  R  L  I  A  K  G  Y  N  Q  E  Y  G  F  D  Y  S  E  T  F  S  L  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95726" stop="96361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPESPPPVPPPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDGEPTTYYVASKNAYWRHAMDDEFKALTDQKTCVLVPKPHGRHPVGCKWVYKIKHNADDSISRYKARLIAKGYNQEYGFDYSETFSLVIRQETIRLVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="108992" PGL_stop="108044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108992" e_stop="108044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="108992" e_stop="108044" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108992" stop="108044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGCGTCAACTAGCCAGAGTTCAAGAAATCCCACCCAATGATGATATGAGTAAGTTTGCATATGACACTCCACCAGGTTTTGCTTTTAACAGCGAAGAGATTATGAAGATTTGGTACGGGAGTATTATTTCTGAGCTAAGTGAAATGGTTGTGGAGAAAGATAAAGGAAAGGTGGTTCCTGGGTACCTATCGTGGTTTCGTGATCCGATGACATTTGGTGACACTCCTGAAGGATCCAGCAGAAAAAGAAGAGATCAACATATAATAAGACAATTGAAAAAAGAGTTGGAGAAGGCCAAAGCAACCATTGCACGGCAAGAAGTACAAGTCCAAAGAAGAAAAAATCACAAGTTAGAGTTGCAAGATGTGGAAGGAGAATTGAAGCATGCAGAGGGAAGACTAGCCCGATTGGAGGAGGAATTGGATAATAGAATCCACTTGGCACGACAGATAAAAAGGGAGCAGAATTTTGAGATCTCTCGATTGAAGAGGGGCTTCGAGGCATCCGAAGAGGCGCAAAGACAATTGATCATCGAAAGAGCAACACTTCGCCATCAACTTGAAGCAGCAGAAGGGCGAGAGGCCCTCTTGAGGAATAATCTGGGTAATCATCAGGCTTTGTTAAATGACTGTCATCAAAACATGGGAAGGGCTAGACTTCAAGTTCATCAACTAGCAGAGCAAACCTCCTATGTTATTAGAAATCAGCGCCGTATGAATGATCAAGAAGTGGTTGAGCAAGAACGGACCATTGTTCCCCATTTGCCGAAGGTGTTTCTGAATTTGTATGAGACCTTGGGAGGAAAAAGAAAGCCCCAAGAAAGTGATGAAGATTGAAGAAAAGTTTTAGTTGTTTTTGTTGTTCGTTTCATTTTGTTTGTTGAAAGACTTAGTTTCTAGTTTAAAATTTGGTGTTTAGGGATATTATGTTGATCCGGTTGTTTTAAA</gDNA_template>
            <first_frame> Y  A  S  T  S  Q  S  S  R  N  P  T  Q  *  *  Y  E  *  V  C  I  *  H  S  T  R  F  C  F  *  Q  R  R  D  Y  E  D  L  V  R  E  Y  Y  F  *  A  K  *  N  G  C  G  E  R  *  R  K  G  G  S  W  V  P  I  V  V  S  *  S  D  D  I  W  *  H  S  *  R  I  Q  Q  K  K  K  R  S  T  Y  N  K  T  I  E  K  R  V  G  E  G  Q  S  N  H  C  T  A  R  S  T  S  P  K  K  K  K  S  Q  V  R  V  A  R  C  G  R  R  I  E  A  C  R  G  K  T  S  P  I  G  G  G  I  G  *  *  N  P  L  G  T  T  D  K  K  G  A  E  F  *  D  L  S  I  E  E  G  L  R  G  I  R  R  G  A  K  T  I  D  H  R  K  S  N  T  S  P  S  T  *  S  S  R  R  A  R  G  P  L  E  E  *  S  G  *  S  S  G  F  V  K  *  L  S  S  K  H  G  K  G  *  T  S  S  S  S  T  S  R  A  N  L  L  C  Y  *  K  S  A  P  Y  E  *  S  R  S  G  *  A  R  T  D  H  C  S  P  F  A  E  G  V  S  E  F  V  *  D  L  G  R  K  K  K  A  P  R  K  *  *  R  L  K  K  S  F  S  C  F  C  C  S  F  H  F  V  C  *  K  T  *  F  L  V  *  N  L  V  F  R  D  I  M  L  I  R  L  F  *  </first_frame>
            <second_frame>  M  R  Q  L  A  R  V  Q  E  I  P  P  N  D  D  M  S  K  F  A  Y  D  T  P  P  G  F  A  F  N  S  E  E  I  M  K  I  W  Y  G  S  I  I  S  E  L  S  E  M  V  V  E  K  D  K  G  K  V  V  P  G  Y  L  S  W  F  R  D  P  M  T  F  G  D  T  P  E  G  S  S  R  K  R  R  D  Q  H  I  I  R  Q  L  K  K  E  L  E  K  A  K  A  T  I  A  R  Q  E  V  Q  V  Q  R  R  K  N  H  K  L  E  L  Q  D  V  E  G  E  L  K  H  A  E  G  R  L  A  R  L  E  E  E  L  D  N  R  I  H  L  A  R  Q  I  K  R  E  Q  N  F  E  I  S  R  L  K  R  G  F  E  A  S  E  E  A  Q  R  Q  L  I  I  E  R  A  T  L  R  H  Q  L  E  A  A  E  G  R  E  A  L  L  R  N  N  L  G  N  H  Q  A  L  L  N  D  C  H  Q  N  M  G  R  A  R  L  Q  V  H  Q  L  A  E  Q  T  S  Y  V  I  R  N  Q  R  R  M  N  D  Q  E  V  V  E  Q  E  R  T  I  V  P  H  L  P  K  V  F  L  N  L  Y  E  T  L  G  G  K  R  K  P  Q  E  S  D  E  D  *  R  K  V  L  V  V  F  V  V  R  F  I  L  F  V  E  R  L  S  F  *  F  K  I  W  C  L  G  I  L  C  *  S  G  C  F  K </second_frame>
            <third_frame>   C  V  N  *  P  E  F  K  K  S  H  P  M  M  I  *  V  S  L  H  M  T  L  H  Q  V  L  L  L  T  A  K  R  L  *  R  F  G  T  G  V  L  F  L  S  *  V  K  W  L  W  R  K  I  K  E  R  W  F  L  G  T  Y  R  G  F  V  I  R  *  H  L  V  T  L  L  K  D  P  A  E  K  E  E  I  N  I  *  *  D  N  *  K  K  S  W  R  R  P  K  Q  P  L  H  G  K  K  Y  K  S  K  E  E  K  I  T  S  *  S  C  K  M  W  K  E  N  *  S  M  Q  R  E  D  *  P  D  W  R  R  N  W  I  I  E  S  T  W  H  D  R  *  K  G  S  R  I  L  R  S  L  D  *  R  G  A  S  R  H  P  K  R  R  K  D  N  *  S  S  K  E  Q  H  F  A  I  N  L  K  Q  Q  K  G  E  R  P  S  *  G  I  I  W  V  I  I  R  L  C  *  M  T  V  I  K  T  W  E  G  L  D  F  K  F  I  N  *  Q  S  K  P  P  M  L  L  E  I  S  A  V  *  M  I  K  K  W  L  S  K  N  G  P  L  F  P  I  C  R  R  C  F  *  I  C  M  R  P  W  E  E  K  E  S  P  K  K  V  M  K  I  E  E  K  F  *  L  F  L  L  F  V  S  F  C  L  L  K  D  L  V  S  S  L  K  F  G  V  *  G  Y  Y  V  D  P  V  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108991" stop="108155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRQLARVQEIPPNDDMSKFAYDTPPGFAFNSEEIMKIWYGSIISELSEMVVEKDKGKVVPGYLSWFRDPMTFGDTPEGSSRKRRDQHIIRQLKKELEKAKATIARQEVQVQRRKNHKLELQDVEGELKHAEGRLARLEEELDNRIHLARQIKREQNFEISRLKRGFEASEEAQRQLIIERATLRHQLEAAEGREALLRNNLGNHQALLNDCHQNMGRARLQVHQLAEQTSYVIRNQRRMNDQEVVEQERTIVPHLPKVFLNLYETLGGKRKPQESDED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="113633" PGL_stop="113130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113633" e_stop="113130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="113633" e_stop="113130" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113633" stop="113130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCCTTTCTTCTTCCCCTTACTACCATGCCGCCTGCCGGCCACCGCTACCGCCACCACGCCGCCGGCCACCCACCCCTCTTTGGTCGGAATTTTTTTTAAAATTTTACCATCTTTTCCTTTCATCCTCCTCTACCTAAATCTACAAACCTTTCATCCATATCTATAGCCAAACTCCGTAGATCTAAGGAAAACCAAATATAAATTTTTACTTTTTCCTTAGATTTATAAAGTTCCGGTCATTCCTATCCCAAACCCTTTACATAAATGTGTAGAGCTCTTCAAGGGCTATCATTTGATATAAATTTAAGTTCAAAATCCATCAAAAAAATTTCCGGCAAAGTTTTCCGGCGACCTTCATTACCCGAAAGATATGTCAATCTTTTCCCCCCTCTCAATCTTTATCCAAATTCATCATTATCTTTTTTTTTGTTTGACCATATAAGTCGTTTGATGTCGGATTATGTTATTAATGTTCTATAAGTTTATCATGTTGATGAGTTGC</gDNA_template>
            <first_frame> V  P  F  F  F  P  L  L  P  C  R  L  P  A  T  A  T  A  T  T  P  P  A  T  H  P  S  L  V  G  I  F  F  K  I  L  P  S  F  P  F  I  L  L  Y  L  N  L  Q  T  F  H  P  Y  L  *  P  N  S  V  D  L  R  K  T  K  Y  K  F  L  L  F  P  *  I  Y  K  V  P  V  I  P  I  P  N  P  L  H  K  C  V  E  L  F  K  G  Y  H  L  I  *  I  *  V  Q  N  P  S  K  K  F  P  A  K  F  S  G  D  L  H  Y  P  K  D  M  S  I  F  S  P  L  S  I  F  I  Q  I  H  H  Y  L  F  F  C  L  T  I  *  V  V  *  C  R  I  M  L  L  M  F  Y  K  F  I  M  L  M  S  C </first_frame>
            <second_frame>  S  L  S  S  S  P  Y  Y  H  A  A  C  R  P  P  L  P  P  P  R  R  R  P  P  T  P  L  W  S  E  F  F  L  K  F  Y  H  L  F  L  S  S  S  S  T  *  I  Y  K  P  F  I  H  I  Y  S  Q  T  P  *  I  *  G  K  P  N  I  N  F  Y  F  F  L  R  F  I  K  F  R  S  F  L  S  Q  T  L  Y  I  N  V  *  S  S  S  R  A  I  I  *  Y  K  F  K  F  K  I  H  Q  K  N  F  R  Q  S  F  P  A  T  F  I  T  R  K  I  C  Q  S  F  P  P  S  Q  S  L  S  K  F  I  I  I  F  F  F  V  *  P  Y  K  S  F  D  V  G  L  C  Y  *  C  S  I  S  L  S  C  *  *  V   </second_frame>
            <third_frame>   P  F  L  L  P  L  T  T  M  P  P  A  G  H  R  Y  R  H  H  A  A  G  H  P  P  L  F  G  R  N  F  F  *  N  F  T  I  F  S  F  H  P  P  L  P  K  S  T  N  L  S  S  I  S  I  A  K  L  R  R  S  K  E  N  Q  I  *  I  F  T  F  S  L  D  L  *  S  S  G  H  S  Y  P  K  P  F  T  *  M  C  R  A  L  Q  G  L  S  F  D  I  N  L  S  S  K  S  I  K  K  I  S  G  K  V  F  R  R  P  S  L  P  E  R  Y  V  N  L  F  P  P  L  N  L  Y  P  N  S  S  L  S  F  F  L  F  D  H  I  S  R  L  M  S  D  Y  V  I  N  V  L  *  V  Y  H  V  D  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113367" stop="113152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MCRALQGLSFDINLSSKSIKKISGKVFRRPSLPERYVNLFPPLNLYPNSSLSFFLFDHISRLMSDYVINVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="126332" PGL_stop="126788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126332" e_stop="126788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126332" e_stop="126788" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126332" stop="126788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTCGCCACTAAATATTGACTAACCTTGAATTGCCATATTTACATGAAATTTCAAATTTATCAAAGCTTGAATTCCCTGAAATTTGGAAACCTGACCTGCCAACTCTACCAAAGCCTAAATTTCCAGAATTCCCAAAGCCGAGTTTTCCGCCATTTCCTAAGTGAACTTCCAACATGGCCAAAACTCGAGATTCTTGTCATTTCTAAGACTGAATTGTCAACATTATCAAATCCTAAAATCCCTCAAGTGCCTAAAAAACCATGAGCGCGTGGCATGTGAAATATTCTTTGCCTCATTGAAGTAACATTGATCACATATTTTCCCTTTGTTGTGATACAATCATTTCCTCCTCTCTATTTTGAAAGGATTATTTATGTAATTGGTATGCCATCAATTTACTAATATAATGTTCTTGTATTTCTAATGGCATAGTACACAACATTTATATACTCTG</gDNA_template>
            <first_frame> V  V  A  T  K  Y  *  L  T  L  N  C  H  I  Y  M  K  F  Q  I  Y  Q  S  L  N  S  L  K  F  G  N  L  T  C  Q  L  Y  Q  S  L  N  F  Q  N  S  Q  S  R  V  F  R  H  F  L  S  E  L  P  T  W  P  K  L  E  I  L  V  I  S  K  T  E  L  S  T  L  S  N  P  K  I  P  Q  V  P  K  K  P  *  A  R  G  M  *  N  I  L  C  L  I  E  V  T  L  I  T  Y  F  P  F  V  V  I  Q  S  F  P  P  L  Y  F  E  R  I  I  Y  V  I  G  M  P  S  I  Y  *  Y  N  V  L  V  F  L  M  A  *  Y  T  T  F  I  Y  S  </first_frame>
            <second_frame>  S  S  P  L  N  I  D  *  P  *  I  A  I  F  T  *  N  F  K  F  I  K  A  *  I  P  *  N  L  E  T  *  P  A  N  S  T  K  A  *  I  S  R  I  P  K  A  E  F  S  A  I  S  *  V  N  F  Q  H  G  Q  N  S  R  F  L  S  F  L  R  L  N  C  Q  H  Y  Q  I  L  K  S  L  K  C  L  K  N  H  E  R  V  A  C  E  I  F  F  A  S  L  K  *  H  *  S  H  I  F  P  L  L  *  Y  N  H  F  L  L  S  I  L  K  G  L  F  M  *  L  V  C  H  Q  F  T  N  I  M  F  L  Y  F  *  W  H  S  T  Q  H  L  Y  T  L </second_frame>
            <third_frame>   R  R  H  *  I  L  T  N  L  E  L  P  Y  L  H  E  I  S  N  L  S  K  L  E  F  P  E  I  W  K  P  D  L  P  T  L  P  K  P  K  F  P  E  F  P  K  P  S  F  P  P  F  P  K  *  T  S  N  M  A  K  T  R  D  S  C  H  F  *  D  *  I  V  N  I  I  K  S  *  N  P  S  S  A  *  K  T  M  S  A  W  H  V  K  Y  S  L  P  H  *  S  N  I  D  H  I  F  S  L  C  C  D  T  I  I  S  S  S  L  F  *  K  D  Y  L  C  N  W  Y  A  I  N  L  L  I  *  C  S  C  I  S  N  G  I  V  H  N  I  Y  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126353" stop="126598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLNCHIYMKFQIYQSLNSLKFGNLTCQLYQSLNFQNSQSRVFRHFLSELPTWPKLEILVISKTELSTLSNPKIPQVPKKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="127392" PGL_stop="127989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127392" e_stop="127989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="127392" e_stop="127989" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127392" stop="127989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGT</gDNA_template>
            <first_frame> T  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  L  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  F  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  E  I  P  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  S  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  K  M  P  *  V  P  K  K  P  *  A  R  G  L  L  K  M  Y  C  V  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  V  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  Y  L  </first_frame>
            <second_frame>  Q  K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  C  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  N  S  L  K  F  Q  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  E  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  T  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  F  I  C </second_frame>
            <third_frame>   K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  F  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  I  P  *  N  S  K  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  I  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  E  N  A  L  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  C  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  Q  E  L  F  M  *  L  F  C  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161F11.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127404" stop="127793"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLEEFITWLYTMAYKYIPSFFLLLFVTLFLTSSYVIQVEARNFLEVTIPELPKPELPHLPEIPTLPKLEFPEIPKPELPTLPKPEFPEIPKPEFPSFSKVELPTLPKLEIPVIPKLELPTLSKPKMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 130 chains have been computed
$ 
$ memory statistics:
$ 167672 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 8824 bytes was the average size of a spliced alignment
$ 24632 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1448 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 161 backtrace matrices have been allocated
$ 
$ date finished: 2010-02-05 14:58:50
-->
