<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:50:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M245-R" ref_strand="+" ref_description="SGN-M245-R TG432-R [rflp_markers_reverse]">
      <seq>tacacacaccgagcatgcgttcaacactggtgcaatgagaagggggatattacttgtgagatttgccatcaggtatgtgtcaatcttccagttggtttccaacttcccatattgtcttgtatattataagatgaaagacactgcattctatgcgagagtactcctgcttgtgccattgagttcaaaccacagggttctcttccctcttgaataggagtggggtttttaacctgtcggcaccccaagggtattgtctatgggtttcccttgtcattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="3594" stop="4475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3894" g_stop="4174" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-M245-R" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M245-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3894" e_stop="4174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAA</genome_strand>
        <mrna_strand>TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTATTGTCTATGGGTTTCCCTTGTCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M245-F" ref_strand="+" ref_description="SGN-M245-F TG432-F [rflp_markers_forward]">
      <seq>gggagacatcttgcatgcctgcagagatggatgagttagatccaccgttaagaaatctttttaaagagaaatataaagatggagtgcacagctagtcaactaaccgaaaagaaagcagttggatcttcatcatctccatctgtatctgtcattggtaatgcatggcgcaatagtagaagagccatcaactgtcaatgaaaattatcatttaacactggacatccaataatccataaaggagagacaagtcaagatagatcagcaccaactgagaggccaatctttatataaaggttgaacaaacgactacactttgcattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6162" stop="5254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5859" g_stop="5554" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="324" r_length="306" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-M245-F" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M245-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5859" e_stop="5554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAGATGGATGAGTTAGATCCACCGTTAAGAAATCTTTTTAAAGAGAAATATAAAGATGGAGTGCACAGCTAGTCAACTAACCGAAAAGAAAGCAGTTGGATCTTCATCATCTCCATCTGTATCTGTCATTGGTAATGCATGGCGCAATAGTAGAAGAGCCATCAACTGTCAATGAAAATTATCATTTAACACTGGACATCCAATAATCCATAAAGGAGAGACAAGTCGAGATAGATCAGCAGCAACTGAGAGGCCAATCTTTATATAAAGCTTGAACAAGCGACTACACTTTGCATTTTGA</genome_strand>
        <mrna_strand>CTGCAGAGATGGATGAGTTAGATCCACCGTTAAGAAATCTTTTTAAAGAGAAATATAAAGATGGAGTGCACAGCTAGTCAACTAACCGAAAAGAAAGCAGTTGGATCTTCATCATCTCCATCTGTATCTGTCATTGGTAATGCATGGCGCAATAGTAGAAGAGCCATCAACTGTCAATGAAAATTATCATTTAACACTGGACATCCAATAATCCATAAAGGAGAGACAAGTCAAGATAGATCAGCACCAACTGAGAGGCCAATCTTTATATAAAGGTTGAACAAACGACTACACTTTGCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6609" ref_strand="+" ref_description="SGN-M6609 C2_At1g14790 [cosii_markers]">
      <seq>tctcctggagagaacactaatattctcaaggcaatgctaaactgtggttataagcctgatgctgagccctttctttcaatgatgttgcaaaccttccgcgccatccaagttgctcgatttgcggactagatcaagaatatttattccaaatggaagaacaatgatgggatgtggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggtgctggacatggagagttttctgacgatttacatccatttaataacagcagatccaccaacagtaatttcattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaaggcatcaaaaacttttgaccgcagaaaagatgctgaggccattagtgttgctgtgagggccttgaggaaggaggcaagagcctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattggggttgctacaatcaggggttgaaaagagctcatttcattagctttccctggtgtgtttatgaccagctaatccagattaagaaggacaaagcacgtaacaggccagttctcaacttgtcatctctcagggctcaactgagtcacagattagtgttgaaatgagattccagtcgagcgttaagctgatatatatataatgtaatagggtgtgatcataagaaaactgttatgcattgttgactaccttttgtctttaaaactgcatgaagctgcaacatatatgcagtactctaagaaacagatgtacagctaagtactaatatgtatgtgatttgagtttcatctttcttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101850" stop="105149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102150" g_stop="102577" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="578" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104854" g_length="1022"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="1600" r_length="1022" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-M6609" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1601</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102150" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCG-CATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAACATGGTT</genome_strand>
        <mrna_strand>TCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATG--TGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6609-2" ref_strand="+" ref_description="SGN-M6609-2 C2_At1g14790-2 [cosii_markers]">
      <seq>caagaatatttattccaaatggaagagcaatgatgggatgtttggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggttctggacatagagaattttctgaggatttacatccatttaataacagcagatccaccaactgtaatttcattctcaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggagatatctactttgtttgctgggatcaagacatgattccaccaaggcaagtccaaccgatggaatatcctccagcacccagcatacagttggatcatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcctgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaagctttacaggaaagtgaaggacaaagcacctcaggctagctctactgcgatcttcacaagggatgttgcaaggagatcatatgatgctgatttggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacggaggctgaaatacttagtggtggcatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101980" stop="104625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102280" g_stop="102577" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="449" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104325" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="945" r_length="496" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-M6609-2" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6609-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102280" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGA</genome_strand>
        <mrna_strand>CAAGAATATTTATTCCAAATGGAAGAGCAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTTCTGGACATAGAGAATTTTCTGAGGATTTACATCCATTTAATAACAGCAGATCCACCAACTGTAATTTCATTCTCAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCACCAAGGCAAGTCCAACCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTACAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTACTGCGATCTTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACGGAGGCTGAAATACTTAGTGGTGGCATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6604-2" ref_strand="+" ref_description="SGN-M6604-2 C2_At1g14270-2 [cosii_markers]">
      <seq>aatttatgtatgactctcactcaatcttcacccttttcaccaaaactttattcatcaaaaccccttcttgagaaatcacatagaatctctattgccccattgaccccatttctcaaatttcaagattcagctcctagtcaatgttctacaagagggttcactactatatgcttttctagtcccagaaatggttctgattataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcgcttgcatgtggattaaggcagttttgttttgacaggactaatagagacagcatcaataccatatgtaggacttgatgtagaagcattgagcttggatgacaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatactctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagcgggagcaataggtgcaattgctttaacaggagtggcaatgtctgcttttaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggttcctcaagtatcagcactgcttctctgctaggcattactggtgtacttgctccaattcttgaggagaccgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttactagtggtgctgtatttgctcttgcacatctcactcctggacaatttcctcagttgtttgttcttgggactgctctgggattttcttatgctcagacgcggaacctcctaaccccaatcacaattcatgctttatggaactctggtgttattttgcttctgaccttccttcagctccaaggctatgatatcagggaaataatacaaggaacttgacttaggcaccataattctctggacaaagtcgtcttcatcagcttgtaacaaatctggttttattttctgtaatttaggccaaatgctagttggaacttgtaagtaatgtgagaagctattattcttcttcttttttacaatgccgagttgctaaatttgctggaagagctaataatactcttccctcctgaaaagcagccgaaaaacacacaaggaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109169" stop="104995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108869" g_stop="108672" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="296" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107958" i_length="426">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.564" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107957" g_stop="107846" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="408" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="491" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="625" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="675" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="768" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="106169" g_stop="106078" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="860" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105688" g_stop="105582" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="967" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="105581" i_stop="105472" i_length="110">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="105471" g_stop="105283" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1136" r_length="169" r_score="0.831"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="105282" i_stop="105005" i_length="278">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.658" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="105004" g_stop="104995" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1137" r_stop="1146" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-M6604-2" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>1160</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6604-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108869" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107957" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="106078"/>
          <exon e_start="105688" e_stop="105582"/>
          <exon e_start="105471" e_stop="105283"/>
          <exon e_start="105004" e_stop="104995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCC----A-----TTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCTGTGAATATGCTAGTCTGATTTCTTCCTCTTGAACTCTTTTTTGTGTAGCTCCAAGGATATGATATCAGGGAAATAATACAAGGAACTTGACTTGGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCAGCTTGTCGCAGTTGCTGAACGTAGGAACGAATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTGGTTGGAGCTTGCAAGTAATGTGGGAAGCCGAAAAATCCACAAGGAAGCTTCTGTTCATTTTTCAATAATCTAGTATACTATTTGGTGTAGGTTTTGAGTACACAGTTCTCATATAATGTATCCTTGTGAGTACATGTTGATCGTGATCGTTGTATGAATGAATTTTTGGTAGCCATATTGCTTTGTTTGGACATGTTTCTATCCAAAACTCGATGATATGAAACTCTCTTTCACACTCTACAGACATTCAAATAGATAGTAGACTGAAAAGGTTACTAAATGATATATGGTTCTCTTCACATCCTTATAGACATTCAGATCTTTGGTA</genome_strand>
        <mrna_strand>AATTTATGTATGACTCTCACTCAATCTTCACCCTTTTCACCAAAAC--T-TTATTCATCAAAACCCCTTCTTGAGAAATCACATAGAATCTCTATTGCCCCATTGACCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAATGTTCTACAAGAGGGTTCACTACTATATGCTTTTCTAGTCCCAGAAATGGTTCTGATTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCGCTTGCATGTGGATTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTGTTTTGACAGGACTAATAGAGACAGCATCAATACCATATGTAGGACTTGATGTAGAAGCATTGAGCTTGGATGACAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATACTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGCGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTGGCAATGTCTGCTTTTAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGTTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTAGGCATTACTGGTGTACTTGCTCCAATTCTTGAGGAGACCGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTACTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCTCTGGGATTTTCTTATGCTCAGACGCGGAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTGACCTTCCTTCAG..............................................................................................................CTCCAAGGCTATGATATCAGGGAAATAATACAAGGAACTTGACTTAGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCA-------GC--TTG-T-AAC------A--AATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTAGTTGGAACTTGTAAGTAATGTGAGAAG-CTATTATTCTTC......................................................................................................................................................................................................................................................................................TTCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6604" ref_strand="+" ref_description="SGN-M6604 C2_At1g14270 [cosii_markers]">
      <seq>atttatgtataactctcactcaatcttcacccttttcaccaaaactttattattcatcaaaaccccttcttcagaaatcacatagaatctctattgccccatttctcaaatttcaagattcagctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaagttttgttttgacaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109168" stop="107167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108868" g_stop="108672" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="289" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107953" g_stop="107846" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="397" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="480" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107467" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="566" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-M6604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108868" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107953" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTA</genome_strand>
        <mrna_strand>ATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3894" PGL_stop="4174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3894" e_stop="4174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="3894" e_stop="4174" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3894" stop="4174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M245-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAA</gDNA_template>
            <first_frame> Y  T  H  R  A  C  V  Q  H  W  C  N  E  K  G  D  I  T  C  E  I  C  H  Q  V  C  V  N  L  P  V  G  F  Q  L  P  I  L  S  C  I  L  *  D  E  R  H  C  I  L  C  E  S  T  P  A  C  A  I  E  F  K  P  Q  G  S  L  P  S  *  I  G  V  G  F  L  T  C  R  H  P  K  G  S  G  C  G  F  P  L  S  F  K   </first_frame>
            <second_frame>  T  H  T  E  H  A  F  N  T  G  A  M  R  R  G  I  L  L  V  R  F  A  I  R  Y  V  S  I  F  Q  L  V  S  N  F  P  Y  C  L  V  Y  Y  K  M  K  D  T  A  F  Y  A  R  V  L  L  L  V  P  L  S  S  N  H  R  V  L  F  P  L  E  *  E  W  G  F  *  P  V  G  T  P  R  V  V  A  V  G  F  P  C  H  L  K  </second_frame>
            <third_frame>   H  T  P  S  M  R  S  T  L  V  Q  *  E  G  G  Y  Y  L  *  D  L  P  S  G  M  C  Q  S  S  S  W  F  P  T  S  H  I  V  L  Y  I  I  R  *  K  T  L  H  S  M  R  E  Y  S  C  L  C  H  *  V  Q  T  T  G  F  S  S  L  L  N  R  S  G  V  F  N  L  S  A  P  Q  G  *  W  L  W  V  S  L  V  I  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3895" stop="4107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTEHAFNTGAMRRGILLVRFAIRYVSIFQLVSNFPYCLVYYKMKDTAFYARVLLLVPLSSNHRVLFPLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5859" PGL_stop="5554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5859" e_stop="5554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="5859" e_stop="5554" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5859" stop="5554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M245-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCAGAGATGGATGAGTTAGATCCACCGTTAAGAAATCTTTTTAAAGAGAAATATAAAGATGGAGTGCACAGCTAGTCAACTAACCGAAAAGAAAGCAGTTGGATCTTCATCATCTCCATCTGTATCTGTCATTGGTAATGCATGGCGCAATAGTAGAAGAGCCATCAACTGTCAATGAAAATTATCATTTAACACTGGACATCCAATAATCCATAAAGGAGAGACAAGTCGAGATAGATCAGCAGCAACTGAGAGGCCAATCTTTATATAAAGCTTGAACAAGCGACTACACTTTGCATTTTGA</gDNA_template>
            <first_frame> L  Q  R  W  M  S  *  I  H  R  *  E  I  F  L  K  R  N  I  K  M  E  C  T  A  S  Q  L  T  E  K  K  A  V  G  S  S  S  S  P  S  V  S  V  I  G  N  A  W  R  N  S  R  R  A  I  N  C  Q  *  K  L  S  F  N  T  G  H  P  I  I  H  K  G  E  T  S  R  D  R  S  A  A  T  E  R  P  I  F  I  *  S  L  N  K  R  L  H  F  A  F  * </first_frame>
            <second_frame>  C  R  D  G  *  V  R  S  T  V  K  K  S  F  *  R  E  I  *  R  W  S  A  Q  L  V  N  *  P  K  R  K  Q  L  D  L  H  H  L  H  L  Y  L  S  L  V  M  H  G  A  I  V  E  E  P  S  T  V  N  E  N  Y  H  L  T  L  D  I  Q  *  S  I  K  E  R  Q  V  E  I  D  Q  Q  Q  L  R  G  Q  S  L  Y  K  A  *  T  S  D  Y  T  L  H  F   </second_frame>
            <third_frame>   A  E  M  D  E  L  D  P  P  L  R  N  L  F  K  E  K  Y  K  D  G  V  H  S  *  S  T  N  R  K  E  S  S  W  I  F  I  I  S  I  C  I  C  H  W  *  C  M  A  Q  *  *  K  S  H  Q  L  S  M  K  I  I  I  *  H  W  T  S  N  N  P  *  R  R  D  K  S  R  *  I  S  S  N  *  E  A  N  L  Y  I  K  L  E  Q  A  T  T  L  C  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0145P19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="102150" PGL_stop="104854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102150" e_stop="102577"/>
            <exon e_start="103213" e_stop="103363"/>
            <exon e_start="103833" e_stop="104854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="102150" e_stop="102577" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103213" e_stop="103363" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.888">
            <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="103833" e_stop="104854" e_length="1022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102150" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102280" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6609-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG : ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG : GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAACATGGTT</gDNA_template>
            <first_frame> S  P  G  E  N  T  N  I  L  K  A  M  L  N  C  G  Y  K  P  D  A  E  P  F  L  S  M  M  L  Q  T  F  R  A  S  K  L  L  D  L  R  T  R  S  R  I  F  I  P  N  G  R  T  M  M  G  C  L  D  E  S  R  T  L  E  Y  G  Q  V  F  V  Q  F  T  G  A  G  H  G  E  F  S  D  D  L  H  P  F  N  N  S  R  S  T  N  S  N  F  I  L  K  G  N  V  V  V  A  K  N  P  C  L  H  P  G  D  I  R  V  L  K  A  V  N  V  R  A  L  H  H  M  V  D  C  V  V  F  P  Q  K  G  K  R :   P  H  P  N  E  C  S  G  S  D  L  D  G  D  I  Y  F  V  C  W  D  Q  D  M  I  P  P  R  Q  V  Q  P  M  E  Y  P  P  A  P  S  I  Q  L  D  H  D  V  T  I  E  :  E  V  E  E  Y  F  T  N  Y  I  V  N  D  S  L  G  I  I  A  N  A  H  V  V  F  A  D  R  E  P  D  M  A  M  S  D  P  C  K  K  L  A  E  L  F  S  I  A  V  D  F  P  K  T  G  V  P  A  E  I  P  S  Q  L  R  P  K  E  Y  P  D  F  M  D  K  P  D  K  T  S  Y  I  S  E  R  V  I  G  K  L  F  R  K  V  K  D  K  A  P  Q  A  S  S  I  A  T  F  T  R  D  V  A  R  R  S  Y  D  A  D  M  E  V  D  G  F  E  D  Y  I  D  E  A  F  D  Y  K  T  E  Y  D  N  K  L  G  N  L  M  D  Y  Y  G  I  K  T  E  A  E  I  L  S  G  G  I  M  K  A  S  K  T  F  D  R  R  K  D  A  E  A  I  S  V  A  V  R  A  L  R  K  E  A  R  A  W  F  K  R  R  N  D  I  D  D  M  L  P  K  A  S  A  W  Y  H  V  T  Y  H  P  T  Y  W  G  C  Y  N  Q  G  L  K  R  A  H  F  I  S  F  P  W  C  V  Y  D  Q  L  I  Q  I  K  K  D  K  A  R  N  R  P  V  L  N  L  S  S  L  R  A  Q  L  S  H  R  L  V  L  K  *  D  S  S  R  A  L  S  *  Y  I  Y  N  V  I  G  C  D  H  K  K  T  V  M  H  C  *  L  P  F  V  F  K  T  A  *  S  C  N  I  Y  A  V  L  *  E  T  D  V  Q  L  S  T  N  M  Y  V  I  *  V  S  S  F  F  *  T  W   </first_frame>
            <second_frame>  L  L  E  R  T  L  I  F  S  R  Q  C  *  T  V  V  I  S  L  M  L  S  P  F  F  Q  *  C  C  K  P  S  A  H  P  S  C  S  I  C  G  L  D  Q  E  Y  L  F  Q  M  E  E  Q  *  W  D  V  W  M  N  P  E  P  W  N  M  V  R  C  L  F  S  L  L  V  L  D  M  E  S  F  L  T  I  Y  I  H  L  I  T  A  D  P  P  T  V  I  S  F  *  R  E  M  W  L  L  Q  K  I  H  A  C  I  L  V  I  F  V  F  *  R  L  *  M  F  E  R  C  T  T  W  *  I  V  L  Y  S  L  R  K  E  K   : D  L  I  R  M  N  V  L  G  V  I  W  M  G  I  S  T  L  F  A  G  I  K  T  *  S  R  Q  G  K  S  S  R  W  N  I  L  Q  H  P  A  Y  S  W  T  M  M  S  Q  L  R :   K  L  K  S  T  S  P  T  I  L  *  M  T  V  W  E  S  *  Q  M  P  M  S  Y  L  Q  T  E  N  L  I  W  P  *  V  I  H  A  K  N  L  L  S  S  F  Q  L  Q  W  T  F  Q  R  L  V  F  P  L  K  Y  H  L  S  C  A  L  K  N  T  Q  T  S  W  I  S  R  T  R  P  A  I  S  Q  K  E  L  L  E  S  F  S  G  K  *  R  T  K  H  L  R  L  A  L  S  R  P  S  Q  E  M  L  Q  G  D  H  M  M  L  I  W  K  L  M  D  L  K  I  T  L  T  K  L  L  T  T  K  L  N  M  T  T  S  W  V  I  *  W  T  T  M  A  *  K  Q  R  L  K  Y  L  V  V  A  L  *  R  H  Q  K  L  L  T  A  E  K  M  L  R  P  L  V  L  L  *  G  P  *  G  R  R  Q  E  P  G  S  R  G  V  M  I  *  M  T  C  Y  Q  R  L  R  L  G  T  T  L  H  I  I  L  H  I  G  V  A  T  I  R  G  *  K  E  L  I  S  L  A  F  P  G  V  F  M  T  S  *  S  R  L  R  R  T  K  H  V  T  G  Q  F  S  T  C  H  L  S  G  L  N  *  V  T  D  *  C  *  N  E  I  P  V  E  R  *  A  D  I  Y  I  M  *  *  G  V  I  I  R  K  L  L  C  I  V  D  Y  L  L  S  L  K  L  H  E  A  A  T  Y  M  Q  Y  S  K  K  Q  M  Y  S  *  V  L  I  C  M  *  F  E  F  H  L  S  S  K  H  G  </second_frame>
            <third_frame>   S  W  R  E  H  *  Y  S  Q  G  N  A  K  L  W  L  *  A  *  C  *  A  L  S  F  N  D  V  A  N  L  P  R  I  Q  V  A  R  F  A  D  *  I  K  N  I  Y  S  K  W  K  N  N  D  G  M  F  G  *  I  Q  N  L  G  I  W  S  G  V  C  S  V  Y  W  C  W  T  W  R  V  F  *  R  F  T  S  I  *  *  Q  Q  I  H  Q  Q  *  F  H  S  E  G  K  C  G  C  C  K  K  S  M  L  A  S  W  *  Y  S  C  F  K  G  C  K  C  S  S  A  A  P  H  G  R  L  C  C  I  P  S  E  R  K  K  :  T  S  S  E  *  M  F  W  E  *  F  G  W  G  Y  L  L  C  L  L  G  S  R  H  D  P  A  K  A  S  P  A  D  G  I  S  S  S  T  Q  H  T  V  G  P  *  C  H  N  *   : G  S  *  R  V  L  H  Q  L  Y  C  E  *  Q  F  G  N  H  S  K  C  P  C  R  I  C  R  Q  R  T  *  Y  G  H  E  *  S  M  Q  K  T  C  *  A  L  F  N  C  S  G  L  S  K  D  W  C  S  R  *  N  T  I  S  V  A  P  *  R  I  P  R  L  H  G  *  A  G  Q  D  Q  L  Y  L  R  K  S  Y  W  K  A  F  Q  E  S  E  G  Q  S  T  S  G  *  L  Y  R  D  L  H  K  R  C  C  K  E  I  I  *  C  *  Y  G  S  *  W  I  *  R  L  H  *  R  S  F  *  L  Q  N  *  I  *  Q  Q  A  G  *  F  N  G  L  L  W  H  K  N  R  G  *  N  T  *  W  W  H  Y  E  G  I  K  N  F  *  P  Q  K  R  C  *  G  H  *  C  C  C  E  G  L  E  E  G  G  K  S  L  V  Q  E  A  *  *  Y  R  *  H  V  T  K  G  F  G  L  V  P  R  Y  I  S  S  Y  I  L  G  L  L  Q  S  G  V  E  K  S  S  F  H  *  L  S  L  V  C  L  *  P  A  N  P  D  *  E  G  Q  S  T  *  Q  A  S  S  Q  L  V  I  S  Q  G  S  T  E  S  Q  I  S  V  E  M  R  F  Q  S  S  V  K  L  I  Y  I  *  C  N  R  V  *  S  *  E  N  C  Y  A  L  L  T  T  F  C  L  *  N  C  M  K  L  Q  H  I  C  S  T  L  R  N  R  C  T  A  K  Y  *  Y  V  C  D  L  S  F  I  F  L  L  N  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102150" stop="102577"/>
                    <exon start="103213" stop="103363"/>
                    <exon start="103833" stop="104654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="108869" PGL_stop="104995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108869" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107957" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="106078"/>
            <exon e_start="105688" e_stop="105582"/>
            <exon e_start="105471" e_stop="105283"/>
            <exon e_start="105004" e_stop="104995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="0.864"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="0.989"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="0.946"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="0.988"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="0.978"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="0.980"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.698" acc_prob="0.956" e_score="0.989"/>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="0.963"/>
          <exon-intron don_prob="0.000" acc_prob="0.658" e_score="0.831"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.864">
            <gDNA_exon_boundary e_start="108869" e_stop="108672" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="108383" i_stop="107958" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="107957" e_stop="107846" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="0.957">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="106169" e_stop="106078" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.698" acc_prob="0.956">
            <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="105688" e_stop="105582" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="105581" i_stop="105472" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="0.831">
            <gDNA_exon_boundary e_start="105471" e_stop="105283" e_length="189"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.658">
            <gDNA_intron_boundary i_start="105282" i_stop="105005" i_length="278"/>
          </intron>
          <exon e_serial="11" e_score="0.700">
            <gDNA_exon_boundary e_start="105004" e_stop="104995" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108869" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107957" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106078"/>
              <exon start="105688" stop="105582"/>
              <exon start="105471" stop="105283"/>
              <exon start="105004" stop="104995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6604-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : GCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG : GGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAG : CTCCAAGGATATGATATCAGGGAAATAATACAAGGAACTTGACTTGGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCAGCTTGTCGCAGTTGCTGAACGTAGGAACGAATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTGGTTGGAGCTTGCAAGTAATGTGGGAAGCCGAAAAATCCAC : ATCTTTGGTA</gDNA_template>
            <first_frame> N  L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  R :   Q  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W :   D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S   : A  P  R  I  *  Y  Q  G  N  N  T  R  N  L  T  W  A  P  *  F  S  G  Q  S  R  L  H  Q  L  V  A  V  A  E  R  R  N  E  S  G  F  I  F  C  N  L  G  Q  M  L  V  G  A  C  K  *  C  G  K  P  K  N  P   : H  L  W   </first_frame>
            <second_frame>  I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : G  S  F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L   : G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  :  L  Q  G  Y  D  I  R  E  I  I  Q  G  T  *  L  G  H  H  N  S  L  D  K  V  V  F  I  S  L  S  Q  L  L  N  V  G  T  N  L  V  L  F  S  V  I  *  A  K  C  W  L  E  L  A  S  N  V  G  S  R  K  I  H  :  I  F  G  </second_frame>
            <third_frame>   F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  A  V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  :  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  S :   S  K  D  M  I  S  G  K  *  Y  K  E  L  D  L  G  T  I  I  L  W  T  K  S  S  S  S  A  C  R  S  C  *  T  *  E  R  I  W  F  Y  F  L  *  F  R  P  N  A  G  W  S  L  Q  V  M  W  E  A  E  K  S  T :   S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108384" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106078"/>
                    <exon start="105688" stop="105582"/>
                    <exon start="105471" stop="105430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQLQGYDIREIIQGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108856" stop="108672"/>
                    <exon start="108475" stop="108448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLNLHPFHQNFIIHQNPFFRNHIESLLPHFSNFKIQLLVKVLQEGSLLYVFLVPEMVLVIKEVDLIGQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108868" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107953" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108868" e_stop="108672" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107953" e_stop="107846" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107467" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108868" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6604" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTA</gDNA_template>
            <first_frame> I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L   </first_frame>
            <second_frame>  F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  </second_frame>
            <third_frame>   L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  S :   F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108866" stop="108672"/>
                    <exon start="108475" stop="108384"/>
                    <exon start="107953" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCITLTQSSPFSPKLYYSSKPLLQKSHRISIAPFLKFQDSAPSQGSTRGFTTICFSSPRNGPGYKGGGPDWPILRRWDVPWNWQTVSLSSLACGLSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 13344 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2224 bytes was the average size of a spliced alignment
$ 9656 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2414 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 87 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:51:06
-->
