<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:19:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351484" ref_strand="+" ref_description="SGN-E351484 [cTOS-12-C5]">
      <seq>ttcgatggaaaacttccttcgccatactgcctcgtggcacttccattggttatgattagcataagcacataccaaaaatacccatatcgtgttaaaaagaagcaaatgtgaatcgtgaatacaccatattatgactcccatgaatatttgacaaaatacacaatcaattctactcatctaaaggaaaacagtgcttagagttgacaagtacttttagaggagtccaactctacctcagaactggaaaatttgagtaaaaatctgttgctttactagtagatatatctgcatttgatgtgtatggatatcctcagcatgattccgcattgagtagcagatattggatgaatctctggccggaaactcctatatttgcaatcggtctttctgagaagtcagaaagatatgtggtgcagattaccagctagtttgaagccgcgagatgaagtctagtttgagcttgaactcgggtgtaaaaagaaagatgctttctcttttatcgccttctcatattatatttgggtgggttatttagaaacagaaagactgttaacacctaatgagtggaaatgctatgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="4603" stop="3421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4303" g_stop="3721" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E351484" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4303" e_stop="3721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTT-GTTGTGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</genome_strand>
        <mrna_strand>TTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTTGGGTGGGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274482" ref_strand="+" ref_description="SGN-E274482 [cLEN-11-G11]">
      <seq>aacactcatcttacctgatgactgttgagatgtccattattgggagtctctgtttgataagtagtacttccaagtccccagacggagaagctattagacagcatggattcttctatggatggactgcattaactttgatccctgttattctaaatgccgttggtggaattcttgtgggtcttgtgacttcatatgccggtggtgttaggaagggatttgtcattgtgtctgcgcttcttgtcactgctttgctccagttcatcttcgatggaaaacttccttcgccatactgcctcgtggcacttccattggttatgattagcataagcacataccaaaaatacccatatcgtgttaaaaagaagcaaatgtgaatcgtgaatacaccatattatgactcccatgaatatttgacaaaatacacaatcaattctactcatctaaaggaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="5790" stop="3814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5490" g_stop="5354" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5353" i_stop="4876" i_length="478">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4875" g_stop="4801" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4800" i_stop="4355" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4354" g_stop="4114" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="453" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E274482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5490" e_stop="5354"/>
          <exon e_start="4875" e_stop="4801"/>
          <exon e_start="4354" e_stop="4114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTGGTAAATCAGCATTGCCAATATGCAATTTTATTTTATATATTTTAATGTTTATCCATGGAAGCTTTTTAAATTGGTATGCAAGTACTCAAAACGTCCAGGAACAGGTATCGACATGAATATGAAGGTTTCCTGAAAAAACTAATTAGTTTCCTATCTGGGGATATCTTCTATTAATTTACCTGACGTGTTGTTATTATATGCATCTTATCCTCTGGTTAGATCAATTATCATTTTTAATTTGTTTGTTGAGGTTAATAAATTGTTCCATTAGTTAGGCTTTTACATAATTTTTCTTAATAAAAAATATCAAGATGAACTTGAAGATGAACTGGAACAATTAAAAGGATCAAGATGAACTGGAACGACAAAAAGAAATCAAGTGGCATGGATTCATTTTCTTTTGTTTTGGAAAAGGAGTCAGATCTATCTGAGGTAAAACTCATGATTTTACGTGATACCTCCACTTCTTTTGTTTCAGATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAGGTAAGTGTTTGCTCAACTTCTTATGCTTTACAAGTTGCGCGGAAATTGAATGGGCTTGAATTTTTTCTTGTTGCTATTCTTTTATTGCTTCGCGGCCCCCTTGATTCATTTGAGGCATTTTTAGCTCTGTTACATTACTATGATACTTGAAGTGGAGTCCTAGGACATTTTTATTCTTCTTATTCATAATATGTTCTCTTGATAGTTTATGGTGGAGCGGAGCAGTTAAATGTATGGTCTATTTTCTTTTCCAAATTTATCTGGTTTTTAATAAGACGAGATTATACAAGTTCTGTGCTGCTGAAGGAGCAAATCATCACTTCCCCTTTCCTCCATATGCCCAGTCTTCTTAAAAGAGTCCATCATGCTGTACATTTTGTAAATGTTCCTACCGTACTTTTTCTTGGCAATGTTATTTCTTACTGCTCGTCTTAAATTGTGCGCAGGGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACA</genome_strand>
        <mrna_strand>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317959" ref_strand="+" ref_description="SGN-E317959 [cTOA-30-K14]">
      <seq>tccgacgccatagccagacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataaccgaaggatccgattgaaacagacccgattgtgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctttgactgcatctggactgcctgctgctatttatgcactacaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttgaaccaaacaaaactgttcttcacagccttgtttacttacataattttaaggcagaagcaatccattcaacaaattggggctcttttcttgttaatcatggcagctgtccttttaagtgttggtgaagctccagcaaagcttccagtagtagtaaccccgatgagatcttattctatggaattgtaccagttttgggtgcatctgtgctttctggtttggcatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10332" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10032" g_stop="9768" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="314" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="541" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5771" g_stop="5594" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="718" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E317959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10032" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6911"/>
          <exon e_start="5771" e_stop="5594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAGGTATGCTTTTTTCGTAACTCATGACCACACAAGTTAGTACGTAGATCCGAAATGTTTTCTATCCGTTGACAGTACTGATCGTTACCACTTTGTCTTAGACTTGTTTTGAAAAGATCATCCACCAAGTGTATGTTTGGTTAACTTTGGCAACCATACTAGTGCTTAGACTGATAGGGTCATTTGGTAACAAGGATAAGGGATTATAATCCCAGGGATAAAACGGGGGTTTTGTGACCTATAGGTCACAAGTTCGAGTTGTGGAATCAAACCACTGATGCTTGTGTCAGGGTAGACTGTCTACACTATAACCCCCTCCCCCCTTGAGATGCGGACTGTGTGAGTGCTGGATTCTTCGTTCACTGGACTGCCCTTTATTATATCTTATGCTAGGTAGAATATTTACTTCCGGGATTAGCTATCTCGAGATATTTTATGCCACAATTGTGATATCATATTTATACCACATTCTATATGGGATAATAAGAAATCCCGGACAAATTTGTTATTAAAAAATGCAACATTTGCCCTTCTCCAAACTTTTCTCCAAAAGACTTTTAAGAAAGCCAAGGTAAGAACTAAAAATTAAAGTTATCCAAGCTATCTAGTTTAAACTAGCCAAATGATTGATATTATACCCTTATATCCCATCTTTTTTCCAATCAACCAATCATCTACTGATAAAAGTATTTCCACTGAATAATCTTGTTGTTATCTGATCCCTGTATTATAATCCCAGAATAACTTGTTTGCAAACCAAATGACCCCTTAGTATCTCAGATACCTGATATGGTAAAATTTATTAGATCATGGCCGTCAAACAGTTCTTGTAAACATTATCTGTTTTCATAAGAACTTTTCGCTTACACATTCTCTGTTTTCGTGCAAGCTGTTCTTACATCATCTGATTCACTTAGCTGGCTAGTTGCTATATTTGTTATCTAAATTAAAATTTTGTGACATTCGAGATCTCTGTGTCGGTACAACCATCTCTTGTTTTAATTTTGATTCCTTAAACAATTTTAGCAATGAACAGTTTGTAGCTGCAATATCCTGCAAGTGTTCTTGTTAGTTACACTAATTGTGTATCAGGTGAATCCTGAGAGCCTTATTACCTCAAAATCCCTTCTTTATTTTCTCAGGCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</genome_strand>
        <mrna_strand>TCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAA-GCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGGTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315496" ref_strand="+" ref_description="SGN-E315496 [cTOA-22-H6]">
      <seq>tttcaaagtcatttgataaaacggcgtcgtgtacctttccgacgccatagccagacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataaccgaaggatccgattgaaacagacccgattgtgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctttgactgcatctggactgcctgctgctatttatgcactacaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttggaccaaacaaaactgttcttcacagccttgtttacttacataattttaaggcagaagcaatccattcaacaaattggggctcttttcttgttaatcatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10369" stop="5418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10069" g_stop="9768" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="351" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="578" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5771" g_stop="5718" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="632" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E315496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10069" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6911"/>
          <exon e_start="5771" e_stop="5718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAGGTATGCTTTTTTCGTAACTCATGACCACACAAGTTAGTACGTAGATCCGAAATGTTTTCTATCCGTTGACAGTACTGATCGTTACCACTTTGTCTTAGACTTGTTTTGAAAAGATCATCCACCAAGTGTATGTTTGGTTAACTTTGGCAACCATACTAGTGCTTAGACTGATAGGGTCATTTGGTAACAAGGATAAGGGATTATAATCCCAGGGATAAAACGGGGGTTTTGTGACCTATAGGTCACAAGTTCGAGTTGTGGAATCAAACCACTGATGCTTGTGTCAGGGTAGACTGTCTACACTATAACCCCCTCCCCCCTTGAGATGCGGACTGTGTGAGTGCTGGATTCTTCGTTCACTGGACTGCCCTTTATTATATCTTATGCTAGGTAGAATATTTACTTCCGGGATTAGCTATCTCGAGATATTTTATGCCACAATTGTGATATCATATTTATACCACATTCTATATGGGATAATAAGAAATCCCGGACAAATTTGTTATTAAAAAATGCAACATTTGCCCTTCTCCAAACTTTTCTCCAAAAGACTTTTAAGAAAGCCAAGGTAAGAACTAAAAATTAAAGTTATCCAAGCTATCTAGTTTAAACTAGCCAAATGATTGATATTATACCCTTATATCCCATCTTTTTTCCAATCAACCAATCATCTACTGATAAAAGTATTTCCACTGAATAATCTTGTTGTTATCTGATCCCTGTATTATAATCCCAGAATAACTTGTTTGCAAACCAAATGACCCCTTAGTATCTCAGATACCTGATATGGTAAAATTTATTAGATCATGGCCGTCAAACAGTTCTTGTAAACATTATCTGTTTTCATAAGAACTTTTCGCTTACACATTCTCTGTTTTCGTGCAAGCTGTTCTTACATCATCTGATTCACTTAGCTGGCTAGTTGCTATATTTGTTATCTAAATTAAAATTTTGTGACATTCGAGATCTCTGTGTCGGTACAACCATCTCTTGTTTTAATTTTGATTCCTTAAACAATTTTAGCAATGAACAGTTTGTAGCTGCAATATCCTGCAAGTGTTCTTGTTAGTTACACTAATTGTGTATCAGGTGAATCCTGAGAGCCTTATTACCTCAAAATCCCTTCTTTATTTTCTCAGGCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGC</genome_strand>
        <mrna_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGGACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303787" ref_strand="+" ref_description="SGN-E303787 [cLEX-4-K22]">
      <seq>gacgccatagccagacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataaccgaaggatccgattgaaacagacccgattgtgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctttgactgcatctggactgcctgctgctatttatgcactacaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttgaaccaaacaaaactgttcttcacagccttgtttacttacataatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10329" stop="6613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10029" g_stop="9768" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="311" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6913" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="536" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E303787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10029" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTA</genome_strand>
        <mrna_strand>GACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357237" ref_strand="+" ref_description="SGN-E357237 [cLHT-17-P7]">
      <seq>tctgataaaacggcgtcgtattacctttccgacgccatagccaaacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataatcgaaggatccgattgaaacagacccgattctgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggccgcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctctgactgcatctggactgcctgctgctatttatgcactacaaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10358" stop="6712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10058" g_stop="9768" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="341" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="7012" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="467" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E357237" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10058" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="7012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAAAACGGCGTCGT-GTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGC</genome_strand>
        <mrna_strand>TCTGATAAAACGGCGTCGTATTACCTTTCCGACGCCATAGCCAAACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAATCGAAGGATCCGATTGAAACAGACCCGATTCTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCCGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTCTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="25665" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25965" g_stop="26613" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25965" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="25666" stop="26650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25966" g_stop="26350" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25966" e_stop="26350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="26324" stop="27731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26624" g_stop="27431" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26624" e_stop="27431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250412" ref_strand="+" ref_description="SGN-E250412 [cLEG-6-J1]">
      <seq>gcagaacgtgagctaatgatgattgataaagatttaaaagatgcagaactgaagaagaatcactatgaaggtgtaatgagtacaaaagttctttcccaactcactggagcggaagcagagtatcaggaacttgagcacaaccgtagggagagctacaaaaaagcttcaatcatctgtcctgaaagtgaaattgaggctttaggtggctgtgatggaagcactccggagcaattaagtgcccatttagctaggctaagtcaaagacttcagcaagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaagaacgcaaaattttaagaaagcagcaaacctacaaagcatttcgtgagaaattaggtgcatgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaagcgacagttaacatggcaatttaatggacatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="62032" stop="67671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62332" g_stop="62382" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62383" i_stop="62485" i_length="103">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62486" g_stop="62581" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="147" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62582" i_stop="64793" i_length="2212">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64794" g_stop="64930" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="284" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64994" g_stop="65096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="387" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67285" g_stop="67364" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="467" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67462" g_stop="67478" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="484" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E250412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62332" e_stop="62382"/>
          <exon e_start="62486" e_stop="62581"/>
          <exon e_start="64794" e_stop="64930"/>
          <exon e_start="64994" e_stop="65096"/>
          <exon e_start="67285" e_stop="67364"/>
          <exon e_start="67462" e_stop="67478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTGGTTCAGCTCTACTTTTAGTTGACACTTCATGTTTTTTTTCTTACCTGTGGTGATGTTTGTCAAAATTTATGGTACTTTGGTGCAATTTAAACTCTTATTTCAGAAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGGGTATAATAATTGCGCATTCATATAATTGTATGAGCACTAACAGGGATTGATTAAGATATTGTTATTGTACCAAACCAAAATATATTTTTTTTTGAAAATGGTAACTTCGTCTATTCCTCAAAAGTCAGTACACTGATCAGTATTTATAACACGTACTTCAAATTCTACTATCTTTTACTAAATTGAGTCTAGTACATCAATTAAGGAGATAGTATCATTTGAGTATAATTGATTACACCAAAAACATAATAGCATAAGACAATTTAGTTTGACTTTTTGCATACTATTCTCAACACTATCGAAAGCTCTAGAGTTCCTTTCCTTCCATATTGCCCACCATATGCTAGCTGGGACAATTCTCCATCTGTCTCTATTCTTGGATTGCTTTCCTGCTTCCTCCCAACTCTGAATTGCTTCTGTGATCTTGGCAGGCATGGTCCATGACATACCCTTAAGACTCAGGAATAACCTCCATAGTTGACTTGTGATCTTGCAGTGTAGAAAGAGATGGTCAACTGTTTTAGCAGTTTCCCCACAAAAGAAACAGCTGGAACATAATGGTATCCCCCTTTTCTTTAAGTTGTCTTGAGTCAATACAGCCTCCTTGGCTAACAACAAAACAAAACATGCCACTTCAAGTGGAGTTTTTGACTTCGAGATTCCTCTCCATGGCCAGTGACTTTGAGGCTGATTGGTGTGGTTCAAGCAGTTGTATGCACAACCCACCTTAAAGCTGCCCTTTCGATTGCCTTTCCACCACAAAATGTCCTGACCTCCTTCCAGTCCATTAAATTGCCCAATGGTGTTGAAAATATCTGCTACCCTTTGAATCTCCCAATCATTTAATTGTCTTCTAAAGATGAAGTTTCACGCTTGAGGAGTCCAGTGATCTACTATAGTCTTCTGTTGGTGAGATACTAGAGAGTATATATCAGGATACAAGGCCTCTAGCCTACCTGCCTCAAGCCAATCATCTTTCCAGAATTTTGTTTTCTCTCCATTCCTCACTTTGATCTGTGTGTTAGCCTTAAACTCGGACCACGGAGATCTGATGGATCTCCATACACTAACCCCATATAATATAGTCACTTCTTTGGTCATCCAGTTATCTTCCTCTTCATATTTTGCTCTAATGACTTCCTTCCGGTAGGTATGCTCTCCATTGCTGAACTTCCATAATTATTAATGATAATGTTCAACTAGTTAAATATTAGCCAGAAAAGCTTGATGAAGTGCTTAAACTCAAAGGGTCTTTAATTAATTATAATATTTTGTTGTTTACTGATTGAGACTATTGGCTTTCCTAGTCCGTTTTCCTATTGTAAATGCCTTTTTTGTTTGTGCTTTTGTGATATTTTCAATGTTCTATCACTCAATTTTTTGTTGTTGGGCCTATACTTTTGACTTTTCTACTAAAACAAAATCTAGTTACTATTAGGAAAAGCATATATTGGTTTCCAACAAATTATACACTTCAATAAAAGTCAGTGGAAGCCTTCCGAAGATTAGAATTAACTGCTTAGCTCTTTTCTATTTTTTGTGTTAACAAGATATTTTAGCTTAGAATAGAAGACATTTTTGATGTACTAGATTGTTTGTAGGCTTCAATCTGATTAAAGCCCAAAGATTCTGTAAAGATGTAATACTTTTTTGAAGGGGAACTACACTTTTTGGTTGTAGTATACCTGTGAATATCTATAGACTAATGTAACCAGCCTAAAAAAAAGGTCAGTGGAAGCTATTCATGCAATTGAAAGAAACATCATGTTTAGTTTCTCCTTTTGTTTTTAAGAACTCTTTTTGAGAGTACAGTGGTATTGCACATAGAACTACAAGCACTTGGTATTTTTTCTGAAATTATTTGACTTATATTGGTGTTCCATGAAATGTTTTAAATGGAAATATTTTTGTTAAGATAGTTGCGCAAATAACAGGAAGTATACCTTTGGCCAGTTACTGTATTTATAGAGTGATTATTAGAGATATAAGTCAGTTACTGGTGAGCCGAAATACTAACAGTATGAAAACTATGATCACGAATGTAATTGGCTCTTACATTTGTAGTTTGATTAACTGCTCACTGCCTTGTCCCCCCTCTTCATGGTCTACCTTATAAGTGGATATATGCTTCTCTCTCTCACTGCTCTAGTTTTCATTTATGTCAGAGGTAGCATCTTACAGTACCTTGCTTTAACTGTACCCCTGGCTGCAGGAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGGTAAGGATTTGATTTAAGTTTGATTGTTTATCTATTCAAACTCATTTATAAACTTCCATGCAGACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGTGTAAGTTACCTACTTTATGGTTATAGTTCACCCTCCTCCATCTGAAAATCGTAAAAATTGTTTTTTCCTGGCTCATAGAAAATGGTAATGAAGGAGTTTCTTGTGATTACCAGATGATTAGCAAGTCTTTTTTTGCTTTGTCATCATGTTAAGTGTGCTTAGATGTTAAATTTTGTTCTGTGAAGAAAAATATATTCTTGCTATTGATATGAATGACTTACTTCCTCACTGATGCTTGGTGCTTTATGCTAGTATGGAAATCTTTCCTGGAAACCTCTTTGCATTTTTTGTATTGGTCTTGCATTATTGGTTCCACATATCTTTTCCTGAAGATGGTACAGAGAGATGTTGGAAGCGATAAATCTTACCAAAGTTGTGTGATCTTCCTCAGAAGGCAATTTGCTTTAAAATCTCCAGTACTTTCTATCATAATCAGAGATGATATTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCTAAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAAATTTACAAGGAACCTAAAACATCTTTAATTGATTCTAGATCTACCATTTACTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCTCTTGTTCTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGAGGTGGAATGATTTTCCATCTTTCGTTATGCCCGGAAATGCTTGCATAACTGCTCCATAACTTCAGGGTCTGCGTAACTTTCCTAGGCATAACTCTTTCATGTACTTCTTATTGATAAAGACATTCCACAAAATGTTGGTTATTCTACAGTAAAGGAAGAGATTGTTGATCTGAGATGATATAAGGAGGATTTTATTATAGAACTGGATAGTGTTAGAGTTTTCCACATCGGTTTAGGGCCTATAATGTACCAGTAAGAAAACATTATGGTATAATTTGGTTCATATACTAGTTTTAGAGGAGTTTTATAATACAGTGATTGCTTTAAACACTAATACCCATGTATCTAATTCCTGTATTTTGGTATGCGCTTGTATCAAGTATAAGATGATAGTGATACCTAAATATTGGAGTTGCAAGTATCATGTGGAGTTAGTTGAGGGGCACGCAAGTTGACCCGGACACCACGGTTTTTGAAAAAAGAGAAGATGATGCTTGAATTTTTCTACAACAAGTTATACTGGAACAAATGACAAACAATACCAAATTTGTACTGGGATTATTTTATCTGATCCCTCTAACCAAAGGACGCTATAGGCTGTTTTGATTTTCATACAGTTGAATGTTATCGAATATGGCAACATTTAATTCTTATTGAATTTTGGTAAATGCTTTTTTTTTATGACAAGGGAAACCCGCAGCTGCTACCCTTTGGGTGCGCACAGAGTAAAAACCCACTCCTATGCAATAGCTTGCAAACCACATAGGAGAGGTCACCCGCACTAAGCAAGCTTGGTGAGACGAGCTCGACCCAGAAGACAATCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGCAAATACTTTTCTTTGTTAAAATGTTTTTTTCTTTTATGCTAGAGTTATCTGTAAACAGTAAGACAGACAATTGTTCGTGTTATATATGGATTACTAGCTGCTTTCTCCAAATACTTAGTATTTGATTACCTACTAAGTGATTGTTCAAGATTGACTAGTGAAAATTTTACATCTAATTTCTCAGATTCTGTACCCGTTCTGAGTTAATTGGAATGACTAGAAATGCTACTTAAAATCATGAATCTTGACCTCCAACTTTACTCAAGTTTCTGCCTCACAGCTAAGTTAGTGAGGCAATGCCTCCTTAAGCTATGTGTTATAATTGTTAGTTTAATTGTTGCAATTCAGCCAATATTTATGACATATGGGGAATTGTGCTATAATAAGTCCGTTATTTGTTCCTAATACTTTTTGGATTTTTAATTGTTTCTTCACTTCCATTTGTAACTTTTTTACCCACTTGCTTAGTGCTAATGCAATCCATCTTGGGGTCTGGCCCTTTGTTTTGTTAAAGTTAACTAATATAAATCTTCCTAAACATATTGTCAGGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCATATTATGTAGGTTCCTTCGTTGTTAGTTCCTTCATATCTCAATTTTTCTTGATTGCCAATTTTGCATTAGATTTAATGGACATTTGG</genome_strand>
        <mrna_strand>GCAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTG.......................................................................................................AAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG...............................................................ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA.................................................................................................ATTTAATGGACATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689141" ref_strand="+" ref_description="SGN-E689141 [t3_tus_80_E16]">
      <seq>aaaaagcttcaatcatctgtcctgaaagtgaaattgaggctttaggtggctgtgatggaagcactccggagcaattaagtgcccatttagctaggctaagtcaaagacttcagcaagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaagaacgcaaaattttaagaaagcagcaaacctacnaagcatttcgtgagaaattaggtgcatgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaagcgacagttaacatggcaatttaatggacatttgggtaaaaaaggaatcagtgggcacatcanagtttgttatgaagagaagactctttcaatagaggtaaaaatgccccaagatgcatcaagcagcagtgttcgtgacacacgaggactttcagggggagaacgctctttttcaactttgtgctttgcacttgctcttcatgagatgactgaagctccatttagagcaatggatgaatttgatgtatttatggatgctgttagcagaaaaatcagcctagacgctgtcgtggattttgcattggcacaaggatcacagtggatatttattacccctcatgacatcagtatggtgaagcaggatgaaagagtaaagaagcagcanatggcggctcctcgttcttgattgcttttgtttttgctttttgggagatgtggttatttttgcggttttcgggttggtatgattatgaagtaggtttttgggtagggttttcgaatatcanaaatcaaattatttgtgtcggatatttaaatttataaatcaaatcgaaccaatagaacatggtttttcaacctcacgtttttctgataaagtaatcatacaaatatattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="64504" stop="70499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64804" g_stop="64930" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64994" g_stop="65096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="230" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67285" g_stop="67364" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="310" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67462" g_stop="67540" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="389" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67669" g_stop="67726" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="447" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68525" g_stop="68622" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="545" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68623" i_stop="69401" i_length="779">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69402" g_stop="69496" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="640" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69497" i_stop="69929" i_length="433">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69930" g_stop="70189" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="902" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="912" polyA_stop="921"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E689141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64804" e_stop="64930"/>
          <exon e_start="64994" e_stop="65096"/>
          <exon e_start="67285" e_stop="67364"/>
          <exon e_start="67462" e_stop="67540"/>
          <exon e_start="67669" e_stop="67726"/>
          <exon e_start="68525" e_stop="68622"/>
          <exon e_start="69402" e_stop="69496"/>
          <exon e_start="69930" e_stop="70189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGGTAAGGATTTGATTTAAGTTTGATTGTTTATCTATTCAAACTCATTTATAAACTTCCATGCAGACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGTGTAAGTTACCTACTTTATGGTTATAGTTCACCCTCCTCCATCTGAAAATCGTAAAAATTGTTTTTTCCTGGCTCATAGAAAATGGTAATGAAGGAGTTTCTTGTGATTACCAGATGATTAGCAAGTCTTTTTTTGCTTTGTCATCATGTTAAGTGTGCTTAGATGTTAAATTTTGTTCTGTGAAGAAAAATATATTCTTGCTATTGATATGAATGACTTACTTCCTCACTGATGCTTGGTGCTTTATGCTAGTATGGAAATCTTTCCTGGAAACCTCTTTGCATTTTTTGTATTGGTCTTGCATTATTGGTTCCACATATCTTTTCCTGAAGATGGTACAGAGAGATGTTGGAAGCGATAAATCTTACCAAAGTTGTGTGATCTTCCTCAGAAGGCAATTTGCTTTAAAATCTCCAGTACTTTCTATCATAATCAGAGATGATATTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCTAAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAAATTTACAAGGAACCTAAAACATCTTTAATTGATTCTAGATCTACCATTTACTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCTCTTGTTCTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGAGGTGGAATGATTTTCCATCTTTCGTTATGCCCGGAAATGCTTGCATAACTGCTCCATAACTTCAGGGTCTGCGTAACTTTCCTAGGCATAACTCTTTCATGTACTTCTTATTGATAAAGACATTCCACAAAATGTTGGTTATTCTACAGTAAAGGAAGAGATTGTTGATCTGAGATGATATAAGGAGGATTTTATTATAGAACTGGATAGTGTTAGAGTTTTCCACATCGGTTTAGGGCCTATAATGTACCAGTAAGAAAACATTATGGTATAATTTGGTTCATATACTAGTTTTAGAGGAGTTTTATAATACAGTGATTGCTTTAAACACTAATACCCATGTATCTAATTCCTGTATTTTGGTATGCGCTTGTATCAAGTATAAGATGATAGTGATACCTAAATATTGGAGTTGCAAGTATCATGTGGAGTTAGTTGAGGGGCACGCAAGTTGACCCGGACACCACGGTTTTTGAAAAAAGAGAAGATGATGCTTGAATTTTTCTACAACAAGTTATACTGGAACAAATGACAAACAATACCAAATTTGTACTGGGATTATTTTATCTGATCCCTCTAACCAAAGGACGCTATAGGCTGTTTTGATTTTCATACAGTTGAATGTTATCGAATATGGCAACATTTAATTCTTATTGAATTTTGGTAAATGCTTTTTTTTTATGACAAGGGAAACCCGCAGCTGCTACCCTTTGGGTGCGCACAGAGTAAAAACCCACTCCTATGCAATAGCTTGCAAACCACATAGGAGAGGTCACCCGCACTAAGCAAGCTTGGTGAGACGAGCTCGACCCAGAAGACAATCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGCAAATACTTTTCTTTGTTAAAATGTTTTTTTCTTTTATGCTAGAGTTATCTGTAAACAGTAAGACAGACAATTGTTCGTGTTATATATGGATTACTAGCTGCTTTCTCCAAATACTTAGTATTTGATTACCTACTAAGTGATTGTTCAAGATTGACTAGTGAAAATTTTACATCTAATTTCTCAGATTCTGTACCCGTTCTGAGTTAATTGGAATGACTAGAAATGCTACTTAAAATCATGAATCTTGACCTCCAACTTTACTCAAGTTTCTGCCTCACAGCTAAGTTAGTGAGGCAATGCCTCCTTAAGCTATGTGTTATAATTGTTAGTTTAATTGTTGCAATTCAGCCAATATTTATGACATATGGGGAATTGTGCTATAATAAGTCCGTTATTTGTTCCTAATACTTTTTGGATTTTTAATTGTTTCTTCACTTCCATTTGTAACTTTTTTACCCACTTGCTTAGTGCTAATGCAATCCATCTTGGGGTCTGGCCCTTTGTTTTGTTAAAGTTAACTAATATAAATCTTCCTAAACATATTGTCAGGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCATATTATGTAGGTTCCTTCGTTGTTAGTTCCTTCATATCTCAATTTTTCTTGATTGCCAATTTTGCATTAGATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAGGTGATTTGAACTAACATGATATGGTTCTGTTTGTCTAAGCTAGTAGTCCATTATTATTTATGTGGTCTGATTCTTTAAATTTTGTTTCCGCCCCATATATCTTTTTGTTTCTCTGAAATATTCCTCAGGTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAGGTTTTTTTCTCTTTCTTTACAAATACTTGGATAGTGAATGCAAGAAACAATGGATGATGCCCTAGCACGGAAAATTTGAATGCTAAATCCCTTTTTTCTCAAATTTATATAGATACTCACACCACAATCAATCAACTAAGCCGTAATCCATAGCTAGTTGGGTTGGCACTGTGATCATATGTGGTAATGGTGTGGGAAAGAAAGTATCTTTAACATCTTGAGAAAGATCAACTTTAGGTCATTAGAATTGGGATGTGAGACTAGTTCGATGCTGCAGCCTTCAAGTACCGGAAGGGAAACAATATTTTTCTATCTAGACAGCATTGCAGATACGATATGAATAAATGTGCACACATAGAGGATATAATGAGTGGTTCCAATAGATTCTTTGGTCATGACTCATGTCCTTCCGTAAGCCTTATAAATGAGATGTCCGAATTCTCAACGGAAACTTAACTTTTGGCCAAGGGTTCAGTCACTTTCTGATGGGGGCAGTGCCCCCGCATGTTAAAATCCTAATGGGGAGTGGCCTGGTCAATTCTCTCCTTTCCCCTTCATTTTCCACCTGAAGCTTTTCCAATACCCATTTCCCGAGGCTTGTATATGTATTATGATGTTTGCATTTTCAGGGGCCATGACAAATTATATCTAATTTGCTTGTTAATTGCATGCTTTATTTGTACCTCTTTGTGATTATCTTTGACAATGAATTATTACTCCTGGGAGTATGTATGGATGCCTTCTTTGAGCATCTGGTAATTTTATCTGATGTGTAACTTTGTTCTCATGGAAAATCAGGGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATGGTGAGTTTTACAACTTGGCTTTGTTTTTGAACTTTATTAAAGAATGCTTTGCACTTGCTCAAAAAGCTGCTCTGAAAGCTGAAGGATTTCTCTTAAGTAGAGAATATATCTCAACTACTTGTTTGTAATGATCAGATGGCATAGTAGCAAAACATTCATAACCATATAATCTTCTTCTTCCAAAAAAAAAAGAACATTCATAACCACATATCTGTTGAAAGCTAAGTCATCACTAGGATTTGGTATTCTGGTTTTTCTTTTATTGTCCTCTTTACCATGAAATTACTGGCTATTTCTTCATTAACAAAGGTAATAAGAAGTCTCTTCTCTGTTAGATAAATGAATGAAACCACCTAGCTGTATGTTTTGCTTTTCACAATTTGTCCATTATAACTGCCATCATCAGGGATCAGATGTCTAGATGAGATTATTATTTGTATTATTCTGTAAATTTAAAGGTAGCTCAAATGGAGTAATGCAGAAGCTGCAAAGAATTGTGACACTTGAGGTGTTGTCTTTTAGATTCCTCATAGATTAGTGCCACCCCATGTATCTGGATGGATGGATCTTTTGATGCAAGCATAGTGTGGTAACTGTCGCAACGGGAGATTGGTTTACTTTTCTGGTCTTAATCATGAATAAGAATTGAAATATACTAATCTGTCAGGCATCTATGAATCCTCATTCTGTAGATTACATAGGGACAAGTTTAGTTTGCACTAAACATCGTAGAGAAACAGTCAATTGGTTGCAATCTGTAACTTCCCATTAATGTACAGGATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAGGTAATCTGAAAATACGAATAATAAGTTATATATCAATCTGAAAGCCTTGATTTGTTTTTGCTACTTAAATTTATAGAAGGATGGATCATGCACTTGCTAAACATACTAATAAGTTTGTCTCTGCTCAATTTTGCAATTTATCTTTTAAGTCTGTAAGGTCAGTAAGATCCTTTTTCGTCGTTACCCAGAATAAAAGCTTTCATCTGGACTATTTGTGTCCAATTTACAAAGGAAAAGGTAAAGTCAGGGTAATGGCTGTTTTCATACACAGTTGGATAGAATTTATCAAACTGTTGTATGGCCAGAATTTATTAGAGGGAGCTCAGCCAAAACTGTTTGAATCTGCCTGCTATTTATCTCAATATCTTAATTCTCTATCTTTGCTTCGAATTGGTTGCAATATTGATCTGCTTAAACATTCTTTTGTATTCAGTATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTT-GGTAGGG-TTTCGAATATCAAAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</genome_strand>
        <mrna_strand>AAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG...............................................................ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACNAAGCATTTCGTGAGAAATTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA.................................................................................................ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCANAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG................................................................................................................................GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCANATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTTGGGTAGGGTTTTCGAATATCANAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323445" ref_strand="+" ref_description="SGN-E323445 [cTOC-7-I6]">
      <seq>aaaagcttcaatcatctgtcctgaaagtgaaattgaggctttaggtggctgtgatggaagcactccggagcaattaagtgcccatttagctaggctaagtcaaagacttcagcaagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaagaacgcaaaattttaagaaagcagcaaacctacaaagcatttcgtgagaaattaggtgcatgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaagcgacagttaacatggcaatttaatggacatttgggtaaaaaaggaatcagtgggcacatcaaagtttgttatgaagagaagactctttcaatagaggtaaaaatgccccaagatgcatcaagcagcagtgttcgtgacacacgaggactttcaaggggagaacgctctttttcaactttgtgctttgcacttgctcttcatgagatgactgaagctccatttagagcaatggatgaatttgatgtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="64505" stop="68921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64805" g_stop="64930" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64994" g_stop="65096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="229" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67285" g_stop="67364" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="309" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67462" g_stop="67540" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="388" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67669" g_stop="67726" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="446" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68525" g_stop="68621" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="543" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E323445" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64805" e_stop="64930"/>
          <exon e_start="64994" e_stop="65096"/>
          <exon e_start="67285" e_stop="67364"/>
          <exon e_start="67462" e_stop="67540"/>
          <exon e_start="67669" e_stop="67726"/>
          <exon e_start="68525" e_stop="68621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGGTAAGGATTTGATTTAAGTTTGATTGTTTATCTATTCAAACTCATTTATAAACTTCCATGCAGACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGTGTAAGTTACCTACTTTATGGTTATAGTTCACCCTCCTCCATCTGAAAATCGTAAAAATTGTTTTTTCCTGGCTCATAGAAAATGGTAATGAAGGAGTTTCTTGTGATTACCAGATGATTAGCAAGTCTTTTTTTGCTTTGTCATCATGTTAAGTGTGCTTAGATGTTAAATTTTGTTCTGTGAAGAAAAATATATTCTTGCTATTGATATGAATGACTTACTTCCTCACTGATGCTTGGTGCTTTATGCTAGTATGGAAATCTTTCCTGGAAACCTCTTTGCATTTTTTGTATTGGTCTTGCATTATTGGTTCCACATATCTTTTCCTGAAGATGGTACAGAGAGATGTTGGAAGCGATAAATCTTACCAAAGTTGTGTGATCTTCCTCAGAAGGCAATTTGCTTTAAAATCTCCAGTACTTTCTATCATAATCAGAGATGATATTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCTAAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAAATTTACAAGGAACCTAAAACATCTTTAATTGATTCTAGATCTACCATTTACTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCTCTTGTTCTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGAGGTGGAATGATTTTCCATCTTTCGTTATGCCCGGAAATGCTTGCATAACTGCTCCATAACTTCAGGGTCTGCGTAACTTTCCTAGGCATAACTCTTTCATGTACTTCTTATTGATAAAGACATTCCACAAAATGTTGGTTATTCTACAGTAAAGGAAGAGATTGTTGATCTGAGATGATATAAGGAGGATTTTATTATAGAACTGGATAGTGTTAGAGTTTTCCACATCGGTTTAGGGCCTATAATGTACCAGTAAGAAAACATTATGGTATAATTTGGTTCATATACTAGTTTTAGAGGAGTTTTATAATACAGTGATTGCTTTAAACACTAATACCCATGTATCTAATTCCTGTATTTTGGTATGCGCTTGTATCAAGTATAAGATGATAGTGATACCTAAATATTGGAGTTGCAAGTATCATGTGGAGTTAGTTGAGGGGCACGCAAGTTGACCCGGACACCACGGTTTTTGAAAAAAGAGAAGATGATGCTTGAATTTTTCTACAACAAGTTATACTGGAACAAATGACAAACAATACCAAATTTGTACTGGGATTATTTTATCTGATCCCTCTAACCAAAGGACGCTATAGGCTGTTTTGATTTTCATACAGTTGAATGTTATCGAATATGGCAACATTTAATTCTTATTGAATTTTGGTAAATGCTTTTTTTTTATGACAAGGGAAACCCGCAGCTGCTACCCTTTGGGTGCGCACAGAGTAAAAACCCACTCCTATGCAATAGCTTGCAAACCACATAGGAGAGGTCACCCGCACTAAGCAAGCTTGGTGAGACGAGCTCGACCCAGAAGACAATCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGCAAATACTTTTCTTTGTTAAAATGTTTTTTTCTTTTATGCTAGAGTTATCTGTAAACAGTAAGACAGACAATTGTTCGTGTTATATATGGATTACTAGCTGCTTTCTCCAAATACTTAGTATTTGATTACCTACTAAGTGATTGTTCAAGATTGACTAGTGAAAATTTTACATCTAATTTCTCAGATTCTGTACCCGTTCTGAGTTAATTGGAATGACTAGAAATGCTACTTAAAATCATGAATCTTGACCTCCAACTTTACTCAAGTTTCTGCCTCACAGCTAAGTTAGTGAGGCAATGCCTCCTTAAGCTATGTGTTATAATTGTTAGTTTAATTGTTGCAATTCAGCCAATATTTATGACATATGGGGAATTGTGCTATAATAAGTCCGTTATTTGTTCCTAATACTTTTTGGATTTTTAATTGTTTCTTCACTTCCATTTGTAACTTTTTTACCCACTTGCTTAGTGCTAATGCAATCCATCTTGGGGTCTGGCCCTTTGTTTTGTTAAAGTTAACTAATATAAATCTTCCTAAACATATTGTCAGGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCATATTATGTAGGTTCCTTCGTTGTTAGTTCCTTCATATCTCAATTTTTCTTGATTGCCAATTTTGCATTAGATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAGGTGATTTGAACTAACATGATATGGTTCTGTTTGTCTAAGCTAGTAGTCCATTATTATTTATGTGGTCTGATTCTTTAAATTTTGTTTCCGCCCCATATATCTTTTTGTTTCTCTGAAATATTCCTCAGGTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAGGTTTTTTTCTCTTTCTTTACAAATACTTGGATAGTGAATGCAAGAAACAATGGATGATGCCCTAGCACGGAAAATTTGAATGCTAAATCCCTTTTTTCTCAAATTTATATAGATACTCACACCACAATCAATCAACTAAGCCGTAATCCATAGCTAGTTGGGTTGGCACTGTGATCATATGTGGTAATGGTGTGGGAAAGAAAGTATCTTTAACATCTTGAGAAAGATCAACTTTAGGTCATTAGAATTGGGATGTGAGACTAGTTCGATGCTGCAGCCTTCAAGTACCGGAAGGGAAACAATATTTTTCTATCTAGACAGCATTGCAGATACGATATGAATAAATGTGCACACATAGAGGATATAATGAGTGGTTCCAATAGATTCTTTGGTCATGACTCATGTCCTTCCGTAAGCCTTATAAATGAGATGTCCGAATTCTCAACGGAAACTTAACTTTTGGCCAAGGGTTCAGTCACTTTCTGATGGGGGCAGTGCCCCCGCATGTTAAAATCCTAATGGGGAGTGGCCTGGTCAATTCTCTCCTTTCCCCTTCATTTTCCACCTGAAGCTTTTCCAATACCCATTTCCCGAGGCTTGTATATGTATTATGATGTTTGCATTTTCAGGGGCCATGACAAATTATATCTAATTTGCTTGTTAATTGCATGCTTTATTTGTACCTCTTTGTGATTATCTTTGACAATGAATTATTACTCCTGGGAGTATGTATGGATGCCTTCTTTGAGCATCTGGTAATTTTATCTGATGTGTAACTTTGTTCTCATGGAAAATCAGGGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTAT</genome_strand>
        <mrna_strand>AAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG...............................................................ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA.................................................................................................ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG................................................................................................................................GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343960" ref_strand="+" ref_description="SGN-E343960 [cTOF-12-O13]">
      <seq>ctaggctaagtcaaagacttcagcaagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaagaacgcaaaattttaagaaagcagcaaacctacaaagcatttcgtgagaaattaggtgcatgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaagcgacagttaacatggcaatttaatggacatttgggtaaaaaaggaatcagtgggcacattcaaagtttgttatgaagagaagactctttcaatagaggtaaaaatgccccaagatgcatcaagcagcagtgttcgtgacacacgaggactttcagggggagaacgctctttttcaactttgtgctttgcacttgctcttcatgagatgactgaagctccatttagagcaatggatgaatttgatgtatttatggatgctgttagcagaaaaatcagcctagacgctgtcgtggattttgcattggcacaaggatcacagtggatatttattacccctcatgacatcagtatggtgaagcaggatgaaagagtaaagaagcagcaaatggcggctcctcgttcttgattgcttttgtttttgctttttgggagatgtggttatttttgcggttttcgggttggtatgattatgaagtangtttttgggtagggtttcgaatatcaaaatcaaattatttgtgtcggatatttaaatttattaatcaaatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="64594" stop="70433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64894" g_stop="64930" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64994" g_stop="65096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="140" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67285" g_stop="67364" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="220" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67462" g_stop="67540" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="300" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67669" g_stop="67726" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="358" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68525" g_stop="68622" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="456" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68623" i_stop="69401" i_length="779">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69402" g_stop="69496" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="551" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69497" i_stop="69929" i_length="433">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69930" g_stop="70133" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="755" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-E343960" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64894" e_stop="64930"/>
          <exon e_start="64994" e_stop="65096"/>
          <exon e_start="67285" e_stop="67364"/>
          <exon e_start="67462" e_stop="67540"/>
          <exon e_start="67669" e_stop="67726"/>
          <exon e_start="68525" e_stop="68622"/>
          <exon e_start="69402" e_stop="69496"/>
          <exon e_start="69930" e_stop="70133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGGTAAGGATTTGATTTAAGTTTGATTGTTTATCTATTCAAACTCATTTATAAACTTCCATGCAGACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGTGTAAGTTACCTACTTTATGGTTATAGTTCACCCTCCTCCATCTGAAAATCGTAAAAATTGTTTTTTCCTGGCTCATAGAAAATGGTAATGAAGGAGTTTCTTGTGATTACCAGATGATTAGCAAGTCTTTTTTTGCTTTGTCATCATGTTAAGTGTGCTTAGATGTTAAATTTTGTTCTGTGAAGAAAAATATATTCTTGCTATTGATATGAATGACTTACTTCCTCACTGATGCTTGGTGCTTTATGCTAGTATGGAAATCTTTCCTGGAAACCTCTTTGCATTTTTTGTATTGGTCTTGCATTATTGGTTCCACATATCTTTTCCTGAAGATGGTACAGAGAGATGTTGGAAGCGATAAATCTTACCAAAGTTGTGTGATCTTCCTCAGAAGGCAATTTGCTTTAAAATCTCCAGTACTTTCTATCATAATCAGAGATGATATTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCTAAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAAATTTACAAGGAACCTAAAACATCTTTAATTGATTCTAGATCTACCATTTACTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCTCTTGTTCTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGAGGTGGAATGATTTTCCATCTTTCGTTATGCCCGGAAATGCTTGCATAACTGCTCCATAACTTCAGGGTCTGCGTAACTTTCCTAGGCATAACTCTTTCATGTACTTCTTATTGATAAAGACATTCCACAAAATGTTGGTTATTCTACAGTAAAGGAAGAGATTGTTGATCTGAGATGATATAAGGAGGATTTTATTATAGAACTGGATAGTGTTAGAGTTTTCCACATCGGTTTAGGGCCTATAATGTACCAGTAAGAAAACATTATGGTATAATTTGGTTCATATACTAGTTTTAGAGGAGTTTTATAATACAGTGATTGCTTTAAACACTAATACCCATGTATCTAATTCCTGTATTTTGGTATGCGCTTGTATCAAGTATAAGATGATAGTGATACCTAAATATTGGAGTTGCAAGTATCATGTGGAGTTAGTTGAGGGGCACGCAAGTTGACCCGGACACCACGGTTTTTGAAAAAAGAGAAGATGATGCTTGAATTTTTCTACAACAAGTTATACTGGAACAAATGACAAACAATACCAAATTTGTACTGGGATTATTTTATCTGATCCCTCTAACCAAAGGACGCTATAGGCTGTTTTGATTTTCATACAGTTGAATGTTATCGAATATGGCAACATTTAATTCTTATTGAATTTTGGTAAATGCTTTTTTTTTATGACAAGGGAAACCCGCAGCTGCTACCCTTTGGGTGCGCACAGAGTAAAAACCCACTCCTATGCAATAGCTTGCAAACCACATAGGAGAGGTCACCCGCACTAAGCAAGCTTGGTGAGACGAGCTCGACCCAGAAGACAATCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGCAAATACTTTTCTTTGTTAAAATGTTTTTTTCTTTTATGCTAGAGTTATCTGTAAACAGTAAGACAGACAATTGTTCGTGTTATATATGGATTACTAGCTGCTTTCTCCAAATACTTAGTATTTGATTACCTACTAAGTGATTGTTCAAGATTGACTAGTGAAAATTTTACATCTAATTTCTCAGATTCTGTACCCGTTCTGAGTTAATTGGAATGACTAGAAATGCTACTTAAAATCATGAATCTTGACCTCCAACTTTACTCAAGTTTCTGCCTCACAGCTAAGTTAGTGAGGCAATGCCTCCTTAAGCTATGTGTTATAATTGTTAGTTTAATTGTTGCAATTCAGCCAATATTTATGACATATGGGGAATTGTGCTATAATAAGTCCGTTATTTGTTCCTAATACTTTTTGGATTTTTAATTGTTTCTTCACTTCCATTTGTAACTTTTTTACCCACTTGCTTAGTGCTAATGCAATCCATCTTGGGGTCTGGCCCTTTGTTTTGTTAAAGTTAACTAATATAAATCTTCCTAAACATATTGTCAGGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCATATTATGTAGGTTCCTTCGTTGTTAGTTCCTTCATATCTCAATTTTTCTTGATTGCCAATTTTGCATTAGATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACA-TCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAGGTGATTTGAACTAACATGATATGGTTCTGTTTGTCTAAGCTAGTAGTCCATTATTATTTATGTGGTCTGATTCTTTAAATTTTGTTTCCGCCCCATATATCTTTTTGTTTCTCTGAAATATTCCTCAGGTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAGGTTTTTTTCTCTTTCTTTACAAATACTTGGATAGTGAATGCAAGAAACAATGGATGATGCCCTAGCACGGAAAATTTGAATGCTAAATCCCTTTTTTCTCAAATTTATATAGATACTCACACCACAATCAATCAACTAAGCCGTAATCCATAGCTAGTTGGGTTGGCACTGTGATCATATGTGGTAATGGTGTGGGAAAGAAAGTATCTTTAACATCTTGAGAAAGATCAACTTTAGGTCATTAGAATTGGGATGTGAGACTAGTTCGATGCTGCAGCCTTCAAGTACCGGAAGGGAAACAATATTTTTCTATCTAGACAGCATTGCAGATACGATATGAATAAATGTGCACACATAGAGGATATAATGAGTGGTTCCAATAGATTCTTTGGTCATGACTCATGTCCTTCCGTAAGCCTTATAAATGAGATGTCCGAATTCTCAACGGAAACTTAACTTTTGGCCAAGGGTTCAGTCACTTTCTGATGGGGGCAGTGCCCCCGCATGTTAAAATCCTAATGGGGAGTGGCCTGGTCAATTCTCTCCTTTCCCCTTCATTTTCCACCTGAAGCTTTTCCAATACCCATTTCCCGAGGCTTGTATATGTATTATGATGTTTGCATTTTCAGGGGCCATGACAAATTATATCTAATTTGCTTGTTAATTGCATGCTTTATTTGTACCTCTTTGTGATTATCTTTGACAATGAATTATTACTCCTGGGAGTATGTATGGATGCCTTCTTTGAGCATCTGGTAATTTTATCTGATGTGTAACTTTGTTCTCATGGAAAATCAGGGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATGGTGAGTTTTACAACTTGGCTTTGTTTTTGAACTTTATTAAAGAATGCTTTGCACTTGCTCAAAAAGCTGCTCTGAAAGCTGAAGGATTTCTCTTAAGTAGAGAATATATCTCAACTACTTGTTTGTAATGATCAGATGGCATAGTAGCAAAACATTCATAACCATATAATCTTCTTCTTCCAAAAAAAAAAGAACATTCATAACCACATATCTGTTGAAAGCTAAGTCATCACTAGGATTTGGTATTCTGGTTTTTCTTTTATTGTCCTCTTTACCATGAAATTACTGGCTATTTCTTCATTAACAAAGGTAATAAGAAGTCTCTTCTCTGTTAGATAAATGAATGAAACCACCTAGCTGTATGTTTTGCTTTTCACAATTTGTCCATTATAACTGCCATCATCAGGGATCAGATGTCTAGATGAGATTATTATTTGTATTATTCTGTAAATTTAAAGGTAGCTCAAATGGAGTAATGCAGAAGCTGCAAAGAATTGTGACACTTGAGGTGTTGTCTTTTAGATTCCTCATAGATTAGTGCCACCCCATGTATCTGGATGGATGGATCTTTTGATGCAAGCATAGTGTGGTAACTGTCGCAACGGGAGATTGGTTTACTTTTCTGGTCTTAATCATGAATAAGAATTGAAATATACTAATCTGTCAGGCATCTATGAATCCTCATTCTGTAGATTACATAGGGACAAGTTTAGTTTGCACTAAACATCGTAGAGAAACAGTCAATTGGTTGCAATCTGTAACTTCCCATTAATGTACAGGATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAGGTAATCTGAAAATACGAATAATAAGTTATATATCAATCTGAAAGCCTTGATTTGTTTTTGCTACTTAAATTTATAGAAGGATGGATCATGCACTTGCTAAACATACTAATAAGTTTGTCTCTGCTCAATTTTGCAATTTATCTTTTAAGTCTGTAAGGTCAGTAAGATCCTTTTTCGTCGTTACCCAGAATAAAAGCTTTCATCTGGACTATTTGTGTCCAATTTACAAAGGAAAAGGTAAAGTCAGGGTAATGGCTGTTTTCATACACAGTTGGATAGAATTTATCAAACTGTTGTATGGCCAGAATTTATTAGAGGGAGCTCAGCCAAAACTGTTTGAATCTGCCTGCTATTTATCTCAATATCTTAATTCTCTATCTTTGCTTCGAATTGGTTGCAATATTGATCTGCTTAAACATTCTTTTGTATTCAGTATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTT-GGTAGGGTTTCGAATATCAAAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAA</genome_strand>
        <mrna_strand>CTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG...............................................................ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA.................................................................................................ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATTCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG................................................................................................................................GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTANGTTTTTGGGTAGGGTTTCGAATATC-AAAATCAAATTATTTGTGTCGGATATTTAAATTTATTAATCAAATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341964" ref_strand="+" ref_description="SGN-E341964 [cTOF-10-E17]">
      <seq>tatttggttggtggatgtgtggaatatatacgggtcttttccggcagtcgctgcagaagaagtatcatctcaagaattcgccctgtgacccttgcctagcacattgctgcttgcactggtgtgccttgtgccaggagcatagagagatgaagaatcgtctgtcagataattctgccctgccgatgacaatagtcaatcctccaccgattcaggagatgaatgctgctgcaagcgacaaccgcgaatatgtaccttcctcagcaaataactctgaacaaaccaacctcgagatgcaagctctatgaaaactctctctatttagcatatacttttcaattcattatatcacataaccagtttatacagtacgttgctggcacagtcaaccttggaactaagttatacaggaacaaaaaattaaagcacaggttaggcccttgaaaaataatgcctcaaaattattcaaatggtacctctctcggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="84175" stop="82144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83875" g_stop="83802" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83801" i_stop="82855" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82460" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="469" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="494"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E341964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83875" e_stop="83802"/>
          <exon e_start="82854" e_stop="82460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAGGTAACATCATCTTTATATGTTTGTGTTTTATTTATGCTTAATAAGGATCAAACCCTTTGTCCTTGATCAATTTTATTCACGGTTTTCTTGCAAGTCCTGCAATTCGTAATGATCAATTTTATTCACGGTTTTCTAGCAAGTCCTGCTATTCGTAACGGTTTAAAAATTTCTTAGCTTAGACTTCTCATCATCATTAGGACGGAGATCATCTTAAACATTCTAGTTGCAAGAAAGTGTCTTTCTGATGTTACTGTAACCAAAAGAATAAAGGGTAACAAAACGTTGAAGTACATTTTCATCATTAGCTGAAGTCGGCGTGCTTTTCATTTTTTAACCTATTTTTAATTGTTAATATTTACGGGAGAGGAGCTTCTGAGCAACGATAAAGTTGTCTCCATGGTTCAAGCTATGGAATTAGCCTGATGGTTGATGGTTGATGGTTGTTTCAGGGTAGGCTGCCTACATCACACCCTCGTAGGGTCTGGTCCTCCCCCCTGCATGAATGCGGGATATTTAGCGCACATATTTCGCTTGTTTTTCAATAAAGAAAGTTTACATTCTCTTTTTGTACAATGCAATGTTGCCTCTGTCATCTATGTGGTTTCTCTAAAGTTAACTGCTGGGAGATGAGAGTGAGACTTGTCATCATAGCAGTGAAAGAAACTTGAATGAACCATAGGAGACCAGTGTGTTCAAATCTTAGTAGATGCGAAAAAAAAACGCTTGGTGATTTCATCATCTATATGTCTTTTAAGTCTTGTCGAAAAGAGTTCCTCAACATCTACGCTGGTGGAGGTAACATGTACCCGGTGGATTAGTTAAGGTGTACACAAAACTGAGAGGTTATTAGAATGGGACTTCAGTCTTCATTTTTTACATTTAATATTGCATTTGTTCTTTACCAGATTGTACCTTATGGTTGTATACACCTTTCGAAAATGATGCAGAATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</genome_strand>
        <mrna_strand>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538368" ref_strand="+" ref_description="SGN-E538368 [TUS-57-I9](-)">
      <seq>aaacttgtgtgctctgtaaagtttgcttcattgattaactgatgccgcttgtggtgtaaaaattacctatatttagctcttgtatgcttctaaagctagcagtcatacccatctacttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90111" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89811" g_stop="88953" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E538368" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89811" e_stop="88953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATATATTAACTTG</genome_strand>
        <mrna_strand>AAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351851" ref_strand="+" ref_description="SGN-E351851 [cTOS-8-G8]">
      <seq>gcgggggcttctctttcaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89683" stop="88661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89383" g_stop="88961" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E351851" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89383" e_stop="88961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATATA</genome_strand>
        <mrna_strand>GCGGGGGCTTCTCTTTC-AAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311486" ref_strand="+" ref_description="SGN-E311486 [cLEZ-18-J10]">
      <seq>tcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90793" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90493" g_stop="90406" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89449" g_stop="88964" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="574" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="587"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E311486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90493" e_stop="90406"/>
          <exon e_start="89449" e_stop="88964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</genome_strand>
        <mrna_strand>TCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217639" ref_strand="+" ref_description="SGN-E217639 [cLEL-25-I11](-)">
      <seq>aaaatcgttttactgcttgagatgtaagagcatgcagtcttagaaatgtactacaaaaattaacatactaagaacaccaanctgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89631" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89331" g_stop="88964" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="390"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E217639" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89331" e_stop="88964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCG-TTTACTGCT-GAGATGTAAGAGCATGCAGTCTTAGAAATGTACTAC-AAAATTAACATACT-AGAACACCAA-CTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</genome_strand>
        <mrna_strand>AAAATCGTTTTACTGCTTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAAATTAACATACTAAGAACACCAANCTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217597" ref_strand="+" ref_description="SGN-E217597 [cLEL-25-I23](-)">
      <seq>aaaatcgtttactgttgagatgtaagagcatgcagtcttagaaatgtactaccaaaattaacatactagaacaccaactgtggttgcttggttctctgaatatagacagagccagtaatgaagatcgtgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89631" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89331" g_stop="88964" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="386"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E217597" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89331" e_stop="88964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTA-CAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATC-TGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</genome_strand>
        <mrna_strand>AAAATCGTTTACTGTTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACCAAAATTAACATACTAGAACACCAACTGTGG-TTGCTTGGTTCTCTGAATATAGACAGAGCCAGTAATGAAGATCGTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693190" ref_strand="+" ref_description="SGN-E693190 [LH_Ea10K20]">
      <seq>gttctctgcaacccttcgatgttcatcttctctgtatcgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgtcaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattttattcttcctgcacaaaatacaaaacatctatgccatgtcgatttaagcttcgtgaggcagagccgcagtgtaatacatgggttcacgtaaactcaatagttttgggttggatcttgtatatggatttttaaaacattattaaatttatgaaagaattgtgaacttcattattattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93098" g_stop="92935" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="383" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="88966" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="866" r_length="483" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="868" polyA_stop="879"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E693190" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93098" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="88966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAG-ATTGTGAACTCGGTTATTATT</genome_strand>
        <mrna_strand>GTTCTCTGCAACCCTTCGATGTTCATCTTCTCTGTATCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTCAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGAC--AGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTTTATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGATTTAAGCTTCGTGAGGCAGAGCCGCAGTGTAATACATGGGTTCACGTAAACTCAATAGTTTTGGGTTGGATCTTGTATATGGATTTTTAAAACATTATTAAATTTATGAAAGAATTGTGAACTTCATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697030" ref_strand="+" ref_description="SGN-E697030 [LH_Ea10K20](-)">
      <seq>cgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgtcaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctttgaatatagacagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattttattcttcctgcacaaaatacaaaacatctatgccatgtcgatttaagcttcgtgaggcagagccgcagtgtaatacatgggttcacgtaaactcaatagtttagtgttggatcttgtatatgtatttttaaaacattattaaaatgatgaaagattgtgaactcaattattatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93054" g_stop="92935" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="339" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="88969" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="818" r_length="479" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="838"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E697030" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93054" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="88969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATT</genome_strand>
        <mrna_strand>CGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTCAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTTTGAATATAGAC--AGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTTTATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGATTTAAGCTTCGTGAGGCAGAGCCGCAGTGTAATACATGGGTTCACGTAAACTCAATAGTTTAGTGTTGGATCTTGTATATGTATTTTTAAAACATTATTAAAATGATGAAAGATTGTGAACTCAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733795" ref_strand="+" ref_description="SGN-E733795 [LB10DH04]">
      <seq>ctgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgtcaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaaaagtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattttattcttcctgcacaaaatacaaaacatctatgccatgtcgatttatgcttcgtgaggcagagtcgcaatgtaacatgtgggttcacgtaaactcaatagttttgtgttggatcttgtatatgcatttttaaaatattattaaatttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90882" stop="88686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90582" g_stop="90406" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89449" g_stop="88978" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="650" r_length="473" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E733795" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90582" e_stop="90406"/>
          <exon e_start="89449" e_stop="88978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAG-AAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAAC</genome_strand>
        <mrna_strand>CTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTCAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAAAAGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTTTATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGATTTATGCTTCGTGAGGCAGAGTCGCAATGTAACATGTGGGTTCACGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGCATTTTTAAAATATTATTAAATTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216019" ref_strand="+" ref_description="SGN-E216019 [cLEL-13-K17](-)">
      <seq>ctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagaggcagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89671" stop="88686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89371" g_stop="88987" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="397"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E216019" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89371" e_stop="88987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAG</genome_strand>
        <mrna_strand>CTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGGCAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216382" ref_strand="+" ref_description="SGN-E216382 [cLEL-13-K17](-)">
      <seq>caaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcccaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89667" stop="88686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89367" g_stop="88987" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="393"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E216382" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89367" e_stop="88987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAG</genome_strand>
        <mrna_strand>CAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCCCAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550054" ref_strand="+" ref_description="SGN-E550054 [TUS-5-M15](-)">
      <seq>acttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttgagtgttggatcttgtatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89997" stop="88715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89697" g_stop="89015" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E550054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89697" e_stop="89015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTAT</genome_strand>
        <mrna_strand>ACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTGAGTGTTGGATCTTGTATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390053" ref_strand="+" ref_description="SGN-E390053 [TUS-4-M15](-)">
      <seq>ttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttgggcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtacactcaatagtggatgttggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="89995" stop="88740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89695" g_stop="89025" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E390053" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89695" e_stop="89025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTT</genome_strand>
        <mrna_strand>TTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTGGGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTACACTCAATAG-TGGATGTTGGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707989" ref_strand="+" ref_description="SGN-E707989 [FA34CB05]">
      <seq>gcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgtcaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaaaagtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattttattcttcctgcacaaaatacaaaacatctatgccatgtcgatttatgcttcgtgaggcagagtcgcaatgtaacatgtgggttcacgtaaactcaatagttttgtgtgggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93100" g_stop="92935" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="385" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89030" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="806" r_length="421" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="821"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E707989" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93100" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAG-AAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGG</genome_strand>
        <mrna_strand>GCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTCAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAAAAGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTTTATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGATTTATGCTTCGTGAGGCAGAGTCGCAATGTAACATGTGGGTTCACGTAAACTCAATAGTTTTGTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389471" ref_strand="+" ref_description="SGN-E389471 [TUS-4-B6](-)">
      <seq>gcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacgtctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttgatgtaaactcaatagttttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90916" stop="88733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90616" g_stop="90406" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89449" g_stop="89033" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="628" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E389471" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90616" e_stop="90406"/>
          <exon e_start="89449" e_stop="89033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGT</genome_strand>
        <mrna_strand>GCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACGTCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTGATGTAAACTCAATAGTTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326768" ref_strand="+" ref_description="SGN-E326768 [cTOC-25-C22]">
      <seq>aactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaatacaaacatctatgccatgtcgttttatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93089" g_stop="92935" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="374" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89089" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="733" r_length="359" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E326768" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93089" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTC</genome_strand>
        <mrna_strand>AACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCAC-AAATAC-AAACATCTATGCCATGTCGTTTTATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326667" ref_strand="+" ref_description="SGN-E326667 [cTOC-17-D3]">
      <seq>aactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattctttctgcacaaatacaaacatctatgccatgtcgttttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93089" g_stop="92935" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="374" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89091" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="731" r_length="357" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E326667" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93089" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCT</genome_strand>
        <mrna_strand>AACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTTCTGCAC-AAATAC-AAACATCTATGCCATGTCGTTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389735" ref_strand="+" ref_description="SGN-E389735 [TUS-4-B6]">
      <seq>caatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaatacaaacatctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93105" g_stop="92935" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="390" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89107" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="731" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E389735" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93105" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGC</genome_strand>
        <mrna_strand>CAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCAC-AAATAC-AAACATCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377161" ref_strand="+" ref_description="SGN-E377161 [TUS-21-K21]">
      <seq>aatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93104" g_stop="92935" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="389" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89114" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="725" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E377161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93104" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACA</genome_strand>
        <mrna_strand>AATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550209" ref_strand="+" ref_description="SGN-E550209 [TUS-5-B6]">
      <seq>cactggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacacaacctgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactggtaacgtttaatatgtgtaactgggaatgcattatattcttcctgcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93105" g_stop="92935" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="390" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89124" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="716" r_length="326" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E550209" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93105" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACT-GTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAA</genome_strand>
        <mrna_strand>CACTGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACAACCTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGGTAACGTTT-AATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322319" ref_strand="+" ref_description="SGN-E322319 [cTOB-24-C18]">
      <seq>ttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatggagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93084" g_stop="92935" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="369" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89125" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="694" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E322319" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93084" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAA</genome_strand>
        <mrna_strand>TTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGGAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342050" ref_strand="+" ref_description="SGN-E342050 [cTOF-10-J21]">
      <seq>tttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaaacaccaactgtggtttngcttggttctctgaatatagacagagacagtaatgagaatctgttaactcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93116" g_stop="92935" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="401" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89197" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="656" r_length="255" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="669"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E342050" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93116" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAA-CACCAACTGTGGTTT-GCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTC</genome_strand>
        <mrna_strand>TTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAAACACCAACTGTGGTTTNGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAGAATCTGTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342114" ref_strand="+" ref_description="SGN-E342114 [cTOF-10-K21]">
      <seq>tttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtctactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93116" g_stop="92935" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="401" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89197" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="654" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="666"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E342114" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93116" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTC</genome_strand>
        <mrna_strand>TTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTCTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235591" ref_strand="+" ref_description="SGN-E235591 [cLED-11-P2]">
      <seq>aatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93104" g_stop="92935" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="389" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89226" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="613" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E235591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93104" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGA</genome_strand>
        <mrna_strand>AATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344101" ref_strand="+" ref_description="SGN-E344101 [cTOF-16-E13]">
      <seq>tagcacgtatgaataagccataaataaattatagaactgaaaattaaaaaaaaaaaattatcaattgtgtgatttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcggnggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtgggtttgcttggttctctgaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93188" g_stop="92935" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="473" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89228" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="696" r_length="223" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E344101" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93188" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGT-GGTTTGCTTGGTTCTCTGAATATA</genome_strand>
        <mrna_strand>TAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGNGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGGTTTGCTTGGTTCTCTGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270052" ref_strand="+" ref_description="SGN-E270052 [cLEM-7-G7]">
      <seq>ttttccgttgaagttttactctcggggatctatctactcttcatacctcaaaacttgtgtgctctgtaaagtttgcttcattgattaactgatgccgcttgtggtgtaaaaattacctatatttagctcttgtatgcttctaaagctagcagtcatacccatctacttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90161" stop="88932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89861" g_stop="89232" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E270052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89861" e_stop="89232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAA</genome_strand>
        <mrna_strand>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255561" ref_strand="+" ref_description="SGN-E255561 [cLEG-30-N6]">
      <seq>aaaaatgatcacaattcaactagcacgtatgaataagccataaataaattatagaactgaaaattaaaaaaaaaaaattatcaattgtgtgatttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93208" g_stop="92935" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89308" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="635" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E255561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93208" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTA</genome_strand>
        <mrna_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207235" ref_strand="+" ref_description="SGN-E207235 [cLEC-30-F2]">
      <seq>cgttctctgccactcttcgatgttcatcttctctacaccgtccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgattgttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacagtgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttacacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctatgccagacgattcaatcatcgagtacaatggatttgttattgattgtgatccaaaaagccttctcttcatcttccgaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93099" g_stop="92935" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="384" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.720" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89334" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="500" r_length="116" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E207235" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93099" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGT</genome_strand>
        <mrna_strand>CGTTCTCTGCCACTCTTCGATGTTCATCTTCTCTACACCGTCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGATTGTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAGTGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTACACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTATGCCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGATCCAAAAAGCCTTCTCTTCATCTTCCGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287309" ref_strand="+" ref_description="SGN-E287309 [cLES-15-O10]">
      <seq>aacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93107" g_stop="92935" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="392" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89344" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="498" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E287309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93107" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAAC</genome_strand>
        <mrna_strand>AACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263906" ref_strand="+" ref_description="SGN-E263906 [cLEG-64-E1]">
      <seq>aaaaatgatcacaattcaactagcacgtatgaataagccataaataaattatagaactgaaaattaaaaaaaaaaaattatcaattgtgtgatttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93208" g_stop="92935" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89351" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="592" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E263906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93208" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTA</genome_strand>
        <mrna_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295146" ref_strand="+" ref_description="SGN-E295146 [cLET-20-O20]">
      <seq>ttctctgcaactcttcgatggtcatgttgtctacaccgcccttcgaagaattcaacaatttcaagcgtgttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgcctattcgatctggtacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggattttgaaaagcgagaaaatgctataccagacgattcaatcatcgagtacactggatcggttattgcttgcgatccaaaaagcctcctcttcatcttcggaatgcaactggactacagcgatgcatggataggcgggggcttctctttcaaaaatccaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93097" g_stop="92935" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="382" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.720" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89354" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="478" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E295146" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93097" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACG</genome_strand>
        <mrna_strand>TTCTCTGCAACTCTTCGATGGTCATGTTGTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTGTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGCCTATTCGATCTGGTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGATTTTGAAAAGCGAGAAAATGCTATACCAGACGATTCAATCATCGAGTACACTGGATCGGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGATCCAAAAAGCCTCCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATGGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296816" ref_strand="+" ref_description="SGN-E296816 [cLET-26-F5]">
      <seq>tgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggtttctctttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93092" g_stop="92935" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="377" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89363" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="464" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E296816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93092" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAA</genome_strand>
        <mrna_strand>TGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGTTTCTCTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265560" ref_strand="+" ref_description="SGN-E265560 [cLEI-14-P7]">
      <seq>atccgccgggctgcaggggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaggaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93109" g_stop="92935" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="184" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="403" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89377" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="476" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E265560" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93109" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGG</genome_strand>
        <mrna_strand>GCTGCAGGGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAGGAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301342" ref_strand="+" ref_description="SGN-E301342 [cLEW-24-G6]">
      <seq>taacaagggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgccattgccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttacaattggcgttcaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaaaggatttgttattggttgtgatccaaaaagccttctcttcatcttcggaatgcaactggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93108" g_stop="92935" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="393" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.720" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89401" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E301342" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93108" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTA</genome_strand>
        <mrna_strand>TAACAAGGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCCATTGCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTACAATTGGCGTTCAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAAAGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266281" ref_strand="+" ref_description="SGN-E266281 [cLEI-3-L23]">
      <seq>aacaatggcgttctctgcagctcttcgatgttcgtcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaactgctacaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93107" g_stop="92935" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90622" i_length="2313">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.049" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90621" g_stop="90406" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="389" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89407" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="432" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E266281" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93107" e_stop="92935"/>
          <exon e_start="90621" e_stop="90406"/>
          <exon e_start="89449" e_stop="89407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACT</genome_strand>
        <mrna_strand>AACAATGGCGTTCTCTGCAGCTCTTCGATGTTCGTCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAACTGCTACACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389911" ref_strand="+" ref_description="SGN-E389911 [TUS-4-M15]">
      <seq>ctttagttcggctgaagcagtaattaaagcacaacgttgacgttattacaggcgatctctcttggctctgataagttgctttggttctgatatatgcagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattggtatgtgtggatttaatttctcattttctaacatgacagtcttggtttcttttgccagagaatgaatatcttttcacaccaaatttagagcaaatttgcagttaatctccgttggatctgtgttcttctgcaaaccttaactccttagcatggaagaaaaataaattcagtgaaacaaccatacttgtgttaatcatgatactcaaccttcactttagttgatgagataagttagttgtgttcatttaatgaaaagacaataagataagtaaaaggaagtatggattgagtgattagttggcgtgatagataaaagaggtgatagatgcattagcaatttaatgtgatgaccctccatataattaaagnntcaagagtttacaggttttaacagtcttgtggggaaatagataggggaaatcactgctcaaatgaagtacaactttgctatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="91023" stop="89652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90723" g_stop="89952" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E389911" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90723" e_stop="89952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGA-CCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</genome_strand>
        <mrna_strand>CTTTAGTTCGGCTGAAGCAGTAATTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCCTCCATAT-AATTAAAGNNTCAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549967" ref_strand="+" ref_description="SGN-E549967 [TUS-5-M15]">
      <seq>ttaggctgaagtaatagttaaagcacaacgttgacgttattacaggcgatctctcttggctctgataagttgctttggttctgatatatgcagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattggtatgtgtggatttaatttctcattttctaacatgacagtcttggtttcttttgccagagaatgaatatcttttcacaccaaatttagagcaaatttgcagttaatctccgttggatctgtgttcttctgcaaaccttaactccttagcatggaagaaaaataaattcagtgaaacaaccatacttgtgttaatcatgatactcaaccttcactttagttgatgagataagttagttgtgttcatttaatgaaaagacaataagataagtaaaaggaagtatggattgagtgattagttggcgtgatagataaaagaggtgatagatgcattagcaatttaatgtgatgacctccatatnaattaaagttcaaagagtttacaggttttaacagtcttgtggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="91017" stop="89700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90717" g_stop="90000" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E549967" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90717" e_stop="90000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAA</genome_strand>
        <mrna_strand>TTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATNAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228114" ref_strand="+" ref_description="SGN-E228114 [cLED-2-P21]">
      <seq>tttagttaggctgaagtaatagttaaagcacaacgttgacgttattacaggcgatctctcttggctctgataagttgctttggttctgatatatgcagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattggtatgtgtggatttaatttctcattttctaacatgacagtcttggtttcttttgccagagaatgaatatcttttcacaccaaatttagagcaaatttgcagctaatctccggtggatctgtgttcttctgcaaaccttaactccttagcatggaagaaaaataaattcagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="91022" stop="89931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90722" g_stop="90231" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-E228114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90722" e_stop="90231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAA</genome_strand>
        <mrna_strand>TTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGCTAATCTCCGGTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>51</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5490" PGL_stop="3721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5490" e_stop="5354"/>
            <exon e_start="4875" e_stop="4801"/>
            <exon e_start="4354" e_stop="3721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5490" e_stop="5354" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.982">
            <gDNA_intron_boundary i_start="5353" i_stop="4876" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4875" e_stop="4801" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4800" i_stop="4355" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="4354" e_stop="3721" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5490" stop="5354"/>
              <exon start="4875" stop="4801"/>
              <exon start="4354" stop="4114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4303" stop="3721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTG : ATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAG : GGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTTGTTGTGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</gDNA_template>
            <first_frame> N  T  H  L  T  *  *  L  L  R  C  P  L  L  G  V  S  V  *  *  V  V  L  P  S  P  Q  T  E  K  L  L  D  S  M  D  S  S  M  D  G  L  H  *  L  * :   S  L  L  F  *  M  P  L  V  E  F  L  W  V  L  *  L  H  M  P  V  V  L  G  R :   D  L  S  L  C  L  R  F  L  S  L  L  C  S  S  S  S  S  M  E  N  F  L  R  H  T  A  S  W  H  F  H  W  L  *  L  A  *  A  H  T  K  N  T  H  I  V  L  K  R  S  K  C  E  S  *  I  H  H  I  M  T  P  M  N  I  *  Q  N  T  Q  S  I  L  L  I  *  R  K  T  V  L  R  V  D  K  Y  F  *  R  S  P  T  L  P  Q  N  W  K  I  *  V  K  I  C  C  F  T  S  R  Y  I  C  I  *  C  V  W  I  S  S  A  *  F  R  I  E  *  Q  I  L  D  E  S  L  A  G  N  S  Y  I  C  N  R  S  F  *  E  V  R  K  I  C  G  A  D  Y  Q  L  V  *  S  R  E  M  K  S  S  L  S  L  N  S  G  V  K  R  K  M  L  S  L  L  S  P  S  H  I  I  F  V  V  L  F  R  N  R  K  T  V  N  T  *  *  V  E  M  L  C  G  N </first_frame>
            <second_frame>  T  L  I  L  P  D  D  C  *  D  V  H  Y  W  E  S  L  F  D  K  *  Y  F  Q  V  P  R  R  R  S  Y  *  T  A  W  I  L  L  W  M  D  C  I  N  F   : D  P  C  Y  S  K  C  R  W  W  N  S  C  G  S  C  D  F  I  C  R  W  C  *  E   : G  I  C  H  C  V  C  A  S  C  H  C  F  A  P  V  H  L  R  W  K  T  S  F  A  I  L  P  R  G  T  S  I  G  Y  D  *  H  K  H  I  P  K  I  P  I  S  C  *  K  E  A  N  V  N  R  E  Y  T  I  L  *  L  P  *  I  F  D  K  I  H  N  Q  F  Y  S  S  K  G  K  Q  C  L  E  L  T  S  T  F  R  G  V  Q  L  Y  L  R  T  G  K  F  E  *  K  S  V  A  L  L  V  D  I  S  A  F  D  V  Y  G  Y  P  Q  H  D  S  A  L  S  S  R  Y  W  M  N  L  W  P  E  T  P  I  F  A  I  G  L  S  E  K  S  E  R  Y  V  V  Q  I  T  S  *  F  E  A  A  R  *  S  L  V  *  A  *  T  R  V  *  K  E  R  C  F  L  F  Y  R  L  L  I  L  Y  L  L  C  Y  L  E  T  E  R  L  L  T  P  N  E  W  K  C  Y  V  E   </second_frame>
            <third_frame>   H  S  S  Y  L  M  T  V  E  M  S  I  I  G  S  L  C  L  I  S  S  T  S  K  S  P  D  G  E  A  I  R  Q  H  G  F  F  Y  G  W  T  A  L  T  L  :  I  P  V  I  L  N  A  V  G  G  I  L  V  G  L  V  T  S  Y  A  G  G  V  R  K  :  G  F  V  I  V  S  A  L  L  V  T  A  L  L  Q  F  I  F  D  G  K  L  P  S  P  Y  C  L  V  A  L  P  L  V  M  I  S  I  S  T  Y  Q  K  Y  P  Y  R  V  K  K  K  Q  M  *  I  V  N  T  P  Y  Y  D  S  H  E  Y  L  T  K  Y  T  I  N  S  T  H  L  K  E  N  S  A  *  S  *  Q  V  L  L  E  E  S  N  S  T  S  E  L  E  N  L  S  K  N  L  L  L  Y  *  *  I  Y  L  H  L  M  C  M  D  I  L  S  M  I  P  H  *  V  A  D  I  G  *  I  S  G  R  K  L  L  Y  L  Q  S  V  F  L  R  S  Q  K  D  M  W  C  R  L  P  A  S  L  K  P  R  D  E  V  *  F  E  L  E  L  G  C  K  K  K  D  A  F  S  F  I  A  F  S  Y  Y  I  C  C  V  I  *  K  Q  K  D  C  *  H  L  M  S  G  N  A  M  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5488" stop="5354"/>
                    <exon start="4875" stop="4801"/>
                    <exon start="4354" stop="4193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSSYLMTVEMSIIGSLCLISSTSKSPDGEAIRQHGFFYGWTALTLIPVILNAVGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFIFDGKLPSPYCLVALPLVMISISTYQKYPYRVKKKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10069" PGL_stop="5594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10069" e_stop="9768"/>
            <exon e_start="7264" e_stop="7216"/>
            <exon e_start="7137" e_stop="6911"/>
            <exon e_start="5771" e_stop="5594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.753" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10069" e_stop="9768" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7264" e_stop="7216" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7137" e_stop="6911" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.753">
            <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="5771" e_stop="5594" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10069" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6911"/>
              <exon start="5771" stop="5718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10058" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="7012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10032" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6911"/>
              <exon start="5771" stop="5594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10029" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG : GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG : GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG : GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</gDNA_template>
            <first_frame> F  Q  S  H  L  I  K  R  R  R  V  P  F  R  R  H  S  Q  T  A  *  K  A  S  R  E  A  F  T  S  S  T  T  A  I  T  E  G  S  D  *  N  R  P  D  C  V  Y  T  F  S  G  R  P  V  M  A  A  T  E  S  K  K  V  N  S  E  N  P  A  A  A  K  T  G  G  K  V  W  F  Y  S  L  L  L  T  L  Q  Y  G  A  Q  P  L  I  S  K  R  F  V  R :   R  E  V  I  V  T  S  S  V  L  T  C  E  A  V  K  :  V  I  C  A  L  V  L  M  A  K  E  G  T  L  K  K  I  Y  R  E  W  T  L  F  G  S  L  T  A  S  G  L  P  A  A  I  Y  A  L  Q  N  S  L  L  Q  I  S  Y  K  N  L  D  S  L  T  F  S  I  L  N  Q  T  K  L  F  F  T  A  L  F  T  Y  I  I  L  R :   Q  K  Q  S  I  Q  Q  I  G  A  L  F  L  L  I  M  A  A  V  L  L  S  V  G  E  G  S  S  K  A  S  S  S  S  N  P  D  E  I  L  F  Y  G  I  V  P  V  L  V  A  S  V  L  S  G  L  A  S  A </first_frame>
            <second_frame>  F  K  V  I  *  *  N  G  V  V  Y  L  S  D  A  I  A  R  Q  H  R  K  L  H  A  K  P  S  P  V  R  Q  Q  Q  *  P  K  D  P  I  E  T  D  P  I  V  C  T  H  F  R  V  D  P  L  W  L  L  R  N  P  K  K  *  T  P  R  T  R  R  R  Q  K  P  A  A  K  C  G  F  I  L  C  F  S  L  Y  S  M  V  L  S  R  *  Y  P  S  V  L  S   : G  V  K  *  *  L  L  H  L  F  *  H  V  K  Q  L  R :   L  F  V  L  L  F  S  W  Q  K  K  A  L  *  R  K  F  T  G  S  G  P  Y  L  A  L  *  L  H  L  D  C  L  L  L  F  M  H  Y  K  T  A  Y  C  R  S  H  I  K  I  L  I  H  S  R  F  Q  S  *  T  K  Q  N  C  S  S  Q  P  C  L  L  T  *  F  *   : G  R  S  N  P  F  N  K  L  G  L  F  S  C  *  S  W  Q  L  S  F  *  V  L  V  K  A  P  A  K  L  P  V  V  V  T  P  M  R  S  Y  S  M  E  L  Y  Q  F  W  L  H  L  C  F  L  V  W  H  L   </second_frame>
            <third_frame>   S  K  S  F  D  K  T  A  S  C  T  F  P  T  P  *  P  D  S  I  E  S  F  T  R  S  L  H  Q  F  D  N  S  N  N  R  R  I  R  L  K  Q  T  R  L  C  V  H  I  F  G  S  T  R  Y  G  C  Y  G  I  Q  K  S  E  L  R  E  P  G  G  G  K  N  R  R  Q  S  V  V  L  F  F  A  S  H  F  T  V  W  C  S  A  A  N  I  Q  A  F  C  Q  :  A  *  S  D  S  Y  F  I  C  F  N  M  *  S  S  *   : G  Y  L  C  S  C  S  H  G  K  R  R  H  F  E  E  N  L  P  G  V  D  L  I  W  L  F  D  C  I  W  T  A  C  C  Y  L  C  T  T  K  Q  L  I  A  D  L  I  *  K  S  *  F  T  H  V  F  N  L  E  P  N  K  T  V  L  H  S  L  V  Y  L  H  N  F  K  :  A  E  A  I  H  S  T  N  W  G  S  F  L  V  N  H  G  S  C  P  F  K  C  W  *  R  L  Q  Q  S  F  Q  *  *  *  P  R  *  D  L  I  L  W  N  C  T  S  F  G  C  I  C  A  F  W  F  G  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9946" stop="9768"/>
                    <exon start="7264" stop="7216"/>
                    <exon start="7137" stop="6911"/>
                    <exon start="5771" stop="5594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPDCVYTFSGRPVMAATESKKVNSENPAAAKTGGKVWFYSLLLTLQYGAQPLISKRFVRREVIVTSSVLTCEAVKVICALVLMAKEGTLKKIYREWTLFGSLTASGLPAAIYALQNSLLQISYKNLDSLTFSILNQTKLFFTALFTYIILRQKQSIQQIGALFLLIMAAVLLSVGEGSSKASSSSNPDEILFYGIVPVLVASVLSGLASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25965" PGL_stop="26613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25965" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="25965" e_stop="26613" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25965" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25966" stop="26350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25966" stop="26613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26624" PGL_stop="27431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26624" e_stop="27431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26624" e_stop="27431" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26624" stop="27431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26626" stop="27429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62332" PGL_stop="70189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62332" e_stop="62382"/>
            <exon e_start="62486" e_stop="62581"/>
            <exon e_start="64794" e_stop="64930"/>
            <exon e_start="64994" e_stop="65096"/>
            <exon e_start="67285" e_stop="67364"/>
            <exon e_start="67462" e_stop="67540"/>
            <exon e_start="67669" e_stop="67726"/>
            <exon e_start="68525" e_stop="68622"/>
            <exon e_start="69402" e_stop="69496"/>
            <exon e_start="69930" e_stop="70189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62332" e_stop="62382" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.674">
            <gDNA_intron_boundary i_start="62383" i_stop="62485" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62486" e_stop="62581" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.792">
            <gDNA_intron_boundary i_start="62582" i_stop="64793" i_length="2212"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64794" e_stop="64930" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64994" e_stop="65096" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67285" e_stop="67364" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.785">
            <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67462" e_stop="67540" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67669" e_stop="67726" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68525" e_stop="68622" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.811">
            <gDNA_intron_boundary i_start="68623" i_stop="69401" i_length="779"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69402" e_stop="69496" e_length="95"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="69497" i_stop="69929" i_length="433"/>
          </intron>
          <exon e_serial="10" e_score="0.977">
            <gDNA_exon_boundary e_start="69930" e_stop="70189" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62332" stop="62382"/>
              <exon start="62486" stop="62581"/>
              <exon start="64794" stop="64930"/>
              <exon start="64994" stop="65096"/>
              <exon start="67285" stop="67364"/>
              <exon start="67462" stop="67478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64804" stop="64930"/>
              <exon start="64994" stop="65096"/>
              <exon start="67285" stop="67364"/>
              <exon start="67462" stop="67540"/>
              <exon start="67669" stop="67726"/>
              <exon start="68525" stop="68622"/>
              <exon start="69402" stop="69496"/>
              <exon start="69930" stop="70189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64805" stop="64930"/>
              <exon start="64994" stop="65096"/>
              <exon start="67285" stop="67364"/>
              <exon start="67462" stop="67540"/>
              <exon start="67669" stop="67726"/>
              <exon start="68525" stop="68621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64894" stop="64930"/>
              <exon start="64994" stop="65096"/>
              <exon start="67285" stop="67364"/>
              <exon start="67462" stop="67540"/>
              <exon start="67669" stop="67726"/>
              <exon start="68525" stop="68622"/>
              <exon start="69402" stop="69496"/>
              <exon start="69930" stop="70133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTG : AAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGG : GAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG : ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT : GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA : ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG : GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAG : GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG : GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAG : TATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTTGGTAGGGTTTCGAATATCAAAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</gDNA_template>
            <first_frame> A  E  R  E  L  M  M  I  D  K  D  L  K  D  A  E  L  :  K  K  N  H  Y  E  G  V  M  S  T  K  V  L  S  Q  L  T  G  A  E  A  E  Y  Q  E  L  E  H  N  R  R  :  E  S  Y  K  K  A  S  I  I  C  P  E  S  E  I  E  A  L  G  G  C  D  G  S  T  P  E  Q  L  S  A  H  L  A  R  L  S  Q  R  L  Q  Q  E  S  R  R :   H  P  E  S  I  E  D  L  R  M  L  Y  N  K  K  E  R  K  I  L  R  K  Q  Q  T  Y  K  A  F  R  E  K  L  G  :  A  C  H  K  A  L  E  L  R  W  S  K  F  Q  R  N  A  T  L  L  K  R  Q  L  T  W  Q :   F  N  G  H  L  G  K  K  G  I  S  G  H  I  K  V  C  Y  E  E  K  T  L  S  I  E  :  V  K  M  P  Q  D  A  S  S  S  S  V  R  D  T  R  G  L  S   : G  G  E  R  S  F  S  T  L  C  F  A  L  A  L  H  E  M  T  E  A  P  F  R  A  M  D  E  F  D  V  F  M  :  D  A  V  S  R  K  I  S  L  D  A  V  V  D  F  A  L  A  Q  G  S  Q  W  I  F  I  T  P  H  D  I  S :   M  V  K  Q  D  E  R  V  K  K  Q  Q  M  A  A  P  R  S  *  L  L  L  F  L  L  F  G  R  C  G  Y  F  C  G  F  R  V  G  M  I  M  K  *  V  F  G  R  V  S  N  I  K  N  Q  I  I  C  V  G  Y  L  N  L  *  I  K  S  N  Q  *  N  M  V  F  Q  P  H  V  F  L  I  K  *  S  Y  K  </first_frame>
            <second_frame>  Q  N  V  S  *  *  *  L  I  K  I  *  K  M  Q  N  * :   R  R  I  T  M  K  V  *  *  V  Q  K  F  F  P  N  S  L  E  R  K  Q  S  I  R  N  L  S  T  T  V  G :   R  A  T  K  K  L  Q  S  S  V  L  K  V  K  L  R  L  *  V  A  V  M  E  A  L  R  S  N  *  V  P  I  *  L  G  *  V  K  D  F  S  K  R  V  G   : D  I  Q  S  P  L  R  T  S  A  C  C  T  T  K  K  N  A  K  F  *  E  S  S  K  P  T  K  H  F  V  R  N  *  V :   H  A  I  K  P  S  S  Y  D  G  A  N  S  R  E  M  L  L  F  *  S  D  S  *  H  G   : N  L  M  D  I  W  V  K  K  E  S  V  G  T  S  K  F  V  M  K  R  R  L  F  Q  *  R :   *  K  C  P  K  M  H  Q  A  A  V  F  V  T  H  E  D  F  Q  :  G  E  N  A  L  F  Q  L  C  A  L  H  L  L  F  M  R  *  L  K  L  H  L  E  Q  W  M  N  L  M  Y  L  W :   M  L  L  A  E  K  S  A  *  T  L  S  W  I  L  H  W  H  K  D  H  S  G  Y  L  L  P  L  M  T  S   : V  W  *  S  R  M  K  E  *  R  S  S  K  W  R  L  L  V  L  D  C  F  C  F  C  F  L  G  D  V  V  I  F  A  V  F  G  L  V  *  L  *  S  R  F  L  V  G  F  R  I  S  K  I  K  L  F  V  S  D  I  *  I  Y  K  S  N  R  T  N  R  T  W  F  F  N  L  T  F  F  *  *  S  N  H  T  N </second_frame>
            <third_frame>   R  T  *  A  N  D  D  *  *  R  F  K  R  C  R  T   : E  E  E  S  L  *  R  C  N  E  Y  K  S  S  F  P  T  H  W  S  G  S  R  V  S  G  T  *  A  Q  P  *   : G  E  L  Q  K  S  F  N  H  L  S  *  K  *  N  *  G  F  R  W  L  *  W  K  H  S  G  A  I  K  C  P  F  S  *  A  K  S  K  T  S  A  R  E  S  E  :  T  S  R  V  H  *  G  P  P  H  V  V  Q  Q  K  R  T  Q  N  F  K  K  A  A  N  L  Q  S  I  S  *  E  I  R   : C  M  P  *  S  P  R  A  T  M  E  Q  I  P  E  K  C  Y  S  F  E  A  T  V  N  M  A  :  I  *  W  T  F  G  *  K  R  N  Q  W  A  H  Q  S  L  L  *  R  E  D  S  F  N  R   : G  K  N  A  P  R  C  I  K  Q  Q  C  S  *  H  T  R  T  F  R :   G  R  T  L  F  F  N  F  V  L  C  T  C  S  S  *  D  D  *  S  S  I  *  S  N  G  *  I  *  C  I  Y   : G  C  C  *  Q  K  N  Q  P  R  R  C  R  G  F  C  I  G  T  R  I  T  V  D  I  Y  Y  P  S  *  H  Q  :  Y  G  E  A  G  *  K  S  K  E  A  A  N  G  G  S  S  F  L  I  A  F  V  F  A  F  W  E  M  W  L  F  L  R  F  S  G  W  Y  D  Y  E  V  G  F  W  *  G  F  E  Y  Q  K  S  N  Y  L  C  R  I  F  K  F  I  N  Q  I  E  P  I  E  H  G  F  S  T  S  R  F  S  D  K  V  I  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62332" stop="62382"/>
                    <exon start="62486" stop="62581"/>
                    <exon start="64794" stop="64930"/>
                    <exon start="64994" stop="65096"/>
                    <exon start="67285" stop="67364"/>
                    <exon start="67462" stop="67540"/>
                    <exon start="67669" stop="67726"/>
                    <exon start="68525" stop="68622"/>
                    <exon start="69402" stop="69496"/>
                    <exon start="69930" stop="69987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERELMMIDKDLKDAELKKNHYEGVMSTKVLSQLTGAEAEYQELEHNRRESYKKASIICPESEIEALGGCDGSTPEQLSAHLARLSQRLQQESRRHPESIEDLRMLYNKKERKILRKQQTYKAFREKLGACHKALELRWSKFQRNATLLKRQLTWQFNGHLGKKGISGHIKVCYEEKTLSIEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDAVVDFALAQGSQWIFITPHDISMVKQDERVKKQQMAAPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83875" PGL_stop="82460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83875" e_stop="83802"/>
            <exon e_start="82854" e_stop="82460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83875" e_stop="83802" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="83801" i_stop="82855" i_length="947"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82854" e_stop="82460" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83875" stop="83802"/>
              <exon start="82854" stop="82460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAG : AATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</gDNA_template>
            <first_frame> Y  L  V  G  G  C  V  E  Y  I  R  V  F  S  G  S  R  C  R  R  S  I  I  S  R :   I  R  P  V  T  L  A  *  H  I  A  A  C  T  G  V  P  C  A  R  S  I  E  R  *  R  I  V  C  Q  I  I  L  P  C  R  *  Q  *  S  I  L  H  R  F  R  R  *  M  L  L  Q  A  T  T  A  N  M  Y  L  P  Q  Q  I  T  L  N  K  P  T  S  R  C  K  L  Y  E  N  S  L  Y  L  A  Y  T  F  Q  F  I  I  S  H  N  Q  F  I  Q  Y  V  A  G  T  V  N  L  G  T  K  L  Y  R  N  K  K  L  K  H  R  L  G  P  *  K  I  M  P  Q  N  Y  S  N  </first_frame>
            <second_frame>  I  W  L  V  D  V  W  N  I  Y  G  S  F  P  A  V  A  A  E  E  V  S  S  Q   : E  F  A  L  *  P  L  P  S  T  L  L  L  A  L  V  C  L  V  P  G  A  *  R  D  E  E  S  S  V  R  *  F  C  P  A  D  D  N  S  Q  S  S  T  D  S  G  D  E  C  C  C  K  R  Q  P  R  I  C  T  F  L  S  K  *  L  *  T  N  Q  P  R  D  A  S  S  M  K  T  L  S  I  *  H  I  L  F  N  S  L  Y  H  I  T  S  L  Y  S  T  L  L  A  Q  S  T  L  E  L  S  Y  T  G  T  K  N  *  S  T  G  *  A  L  E  K  *  C  L  K  I  I  Q  M </second_frame>
            <third_frame>   F  G  W  W  M  C  G  I  Y  T  G  L  F  R  Q  S  L  Q  K  K  Y  H  L  K  :  N  S  P  C  D  P  C  L  A  H  C  C  L  H  W  C  A  L  C  Q  E  H  R  E  M  K  N  R  L  S  D  N  S  A  L  P  M  T  I  V  N  P  P  P  I  Q  E  M  N  A  A  A  S  D  N  R  E  Y  V  P  S  S  A  N  N  S  E  Q  T  N  L  E  M  Q  A  L  *  K  L  S  L  F  S  I  Y  F  S  I  H  Y  I  T  *  P  V  Y  T  V  R  C  W  H  S  Q  P  W  N  *  V  I  Q  E  Q  K  I  K  A  Q  V  R  P  L  K  N  N  A  S  K  L  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83873" stop="83802"/>
                    <exon start="82854" stop="82624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLAHCCLHWCALCQEHREMKNRLSDNSALPMTIVNPPPIQEMNAAASDNREYVPSSANNSEQTNLEMQAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82709" stop="82488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLQATTANMYLPQQITLNKPTSRCKLYENSLYLAYTFQFIISHNQFIQYVAGTVNLGTKLYRNKKLKHRLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="93208" PGL_stop="88953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93208" e_stop="92935"/>
            <exon e_start="90624" e_stop="90406"/>
            <exon e_start="89449" e_stop="88961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.720" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93208" e_stop="92935" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90624" e_stop="90406" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.720">
            <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89449" e_stop="88961" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93188" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93109" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93108" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93107" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93105" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93105" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93104" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93104" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93100" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93099" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93098" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="88966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93097" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93092" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93089" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93089" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93084" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93054" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90616" stop="90406"/>
              <exon start="89449" stop="89033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90582" stop="90406"/>
              <exon start="89449" stop="88978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90406"/>
              <exon start="89449" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89383" stop="88961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89371" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG : CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG : TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATATA</gDNA_template>
            <first_frame> K  N  D  H  N  S  T  S  T  Y  E  *  A  I  N  K  L  *  N  *  K  L  K  K  K  N  Y  Q  L  C  D  L  Q  V  T  M  A  F  S  A  T  L  R  C  S  S  S  L  H  R  P  S  K  N  S  T  I  S  S  V  L  P  Q  S  S  S  S  I  S  F  R  S  S  P  S  F  F  N  R  K  K  S  L  S  I  R  S  A  T  L  E   : A  A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I   : V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L  L  L  Y  </first_frame>
            <second_frame>  K  M  I  T  I  Q  L  A  R  M  N  K  P  *  I  N  Y  R  T  E  N  *  K  K  K  I  I  N  C  V  I  C  R  *  Q  W  R  S  L  Q  L  F  D  V  H  L  L  Y  T  A  L  R  R  I  Q  Q  F  Q  A  F  C  L  N  H  L  L  Q  S  P  F  D  L  R  L  R  F  L  I  A  K  N  H  C  L  F  D  L  L  H  L  K  :  Q  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  :  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  Y  Y  I </second_frame>
            <third_frame>   K  *  S  Q  F  N  *  H  V  *  I  S  H  K  *  I  I  E  L  K  I  K  K  K  K  L  S  I  V  *  F  A  G  N  N  G  V  L  C  N  S  S  M  F  I  F  S  T  P  P  F  E  E  F  N  N  F  K  R  F  A  S  I  I  F  F  N  L  L  S  I  F  A  F  V  F  *  S  Q  K  I  I  V  Y  S  I  C  Y  T  *  S :   S  T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  C :   L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93148" stop="92935"/>
                    <exon start="90624" stop="90406"/>
                    <exon start="89449" stop="89307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKKNYQLCDLQVTMAFSATLRCSSSLHRPSKNSTISSVLPQSSSSISFRSSPSFFNRKKSLSIRSATLEAAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFTAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89861" e_stop="88953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="89861" e_stop="88953" e_length="909"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89861" stop="89232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89811" stop="88953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89697" stop="89015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89695" stop="89025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89383" stop="88961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89371" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATATATTAACTTG</gDNA_template>
            <first_frame> F  S  V  E  V  L  L  S  G  I  Y  L  L  F  I  P  Q  N  L  C  A  L  *  S  L  L  H  *  L  T  D  A  A  C  G  V  K  I  T  Y  I  *  L  L  Y  A  S  K  A  S  S  H  T  H  L  L  R  L  V  H  F  E  T  N  F  N  T  L  D  S  V  S  S  P  C  P  L  C  G  V  F  Y  S  *  S  S  *  S  F  *  C  W  V  H  T  R  N  Q  Y  Y  F  T  L  I  F  V  S  Y  A  C  *  L  L  V  S  V  F  F  S  S  D  Y  *  H  L  N  K  K  F  L  L  H  Q  P  F  L  S  V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L  L  L  Y  I  N  L </first_frame>
            <second_frame>  F  P  L  K  F  Y  S  R  G  S  I  Y  S  S  Y  L  K  T  C  V  L  C  K  V  C  F  I  D  *  L  M  P  L  V  V  *  K  L  P  I  F  S  S  C  M  L  L  K  L  A  V  I  P  I  Y  L  D  *  F  T  L  R  R  I  L  I  P  L  I  Q  *  V  P  L  A  H  C  V  A  F  F  T  H  E  V  V  K  A  F  S  V  G  S  I  Q  E  T  S  T  I  S  L  L  Y  L  *  V  M  R  A  S  Y  L  F  L  F  S  F  R  V  I  I  D  I  *  I  R  N  F  C  C  I  N  P  F  F  Q  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  Y  Y  I  L  T   </second_frame>
            <third_frame>   F  R  *  S  F  T  L  G  D  L  S  T  L  H  T  S  K  L  V  C  S  V  K  F  A  S  L  I  N  *  C  R  L  W  C  K  N  Y  L  Y  L  A  L  V  C  F  *  S  *  Q  S  Y  P  S  T  *  I  S  S  L  *  D  E  F  *  Y  P  *  F  S  K  F  P  L  P  I  V  W  R  F  L  L  M  K  *  L  K  L  L  V  L  G  P  Y  K  K  P  V  L  F  H  S  Y  I  C  K  L  C  V  L  A  T  C  F  C  F  L  F  E  *  L  L  T  F  K  *  E  I  F  V  A  S  T  L  S  F  S  L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I  I  I  Y  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0135A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93107" e_stop="92935"/>
            <exon e_start="90621" e_stop="90406"/>
            <exon e_start="89449" e_stop="88961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.049" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.720" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="93107" e_stop="92935" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.049">
            <gDNA_intron_boundary i_start="92934" i_stop="90622" i_length="2313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90621" e_stop="90406" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.720">
            <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89449" e_stop="88961" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93107" stop="92935"/>
              <exon start="90621" stop="90406"/>
              <exon start="89449" stop="89407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90616" stop="90406"/>
              <exon start="89449" stop="89033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90582" stop="90406"/>
              <exon start="89449" stop="88978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90493" stop="90406"/>
              <exon start="89449" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89383" stop="88961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89371" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="88987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG : CACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG : TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTATATA</gDNA_template>
            <first_frame> N  N  G  V  L  C  N  S  S  M  F  I  F  S  T  P  P  F  E  E  F  N  N  F  K  R  F  A  S  I  I  F  F  N  L  L  S  I  F  A  F  V  F  *  S  Q  K  I  I  V  Y  S  I  C  Y  T  *  S :   T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  C :   L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I  I  I   </first_frame>
            <second_frame>  T  M  A  F  S  A  T  L  R  C  S  S  S  L  H  R  P  S  K  N  S  T  I  S  S  V  L  P  Q  S  S  S  S  I  S  F  R  S  S  P  S  F  F  N  R  K  K  S  L  S  I  R  S  A  T  L  E   : A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I   : V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L  L  L  Y  </second_frame>
            <third_frame>   Q  W  R  S  L  Q  L  F  D  V  H  L  L  Y  T  A  L  R  R  I  Q  Q  F  Q  A  F  C  L  N  H  L  L  Q  S  P  F  D  L  R  L  R  F  L  I  A  K  N  H  C  L  F  D  L  L  H  L  K  :  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  :  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  Y  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93106" stop="92935"/>
                    <exon start="90621" stop="90406"/>
                    <exon start="89449" stop="89307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAFSATLRCSSSLHRPSKNSTISSVLPQSSSSISFRSSPSFFNRKKSLSIRSATLEAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFTAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="90723" e_stop="89952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="90723" e_stop="89952" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90723" stop="89952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90722" stop="90231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90717" stop="90000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</gDNA_template>
            <first_frame> L  *  L  G  *  S  N  S  *  S  T  T  L  T  L  L  Q  A  I  S  L  G  S  D  K  L  L  W  F  *  Y  M  Q  Q  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  V  C  V  D  L  I  S  H  F  L  T  *  Q  S  W  F  L  L  P  E  N  E  Y  L  F  T  P  N  L  E  Q  I  C  S  *  S  P  L  D  L  C  S  S  A  N  L  N  S  L  A  W  K  K  N  K  F  S  E  T  T  I  L  V  L  I  M  I  L  N  L  H  F  S  *  *  D  K  L  V  V  F  I  *  *  K  D  N  K  I  S  K  R  K  Y  G  L  S  D  *  L  A  *  *  I  K  E  V  I  D  A  L  A  I  *  C  D  D  L  H  I  N  *  S  S  K  S  L  Q  V  L  T  V  L  W  G  N  R  *  G  K  S  L  L  K  *  S  T  T  L  L  Y  </first_frame>
            <second_frame>  F  S  *  A  E  V  I  V  K  A  Q  R  *  R  Y  Y  R  R  S  L  L  A  L  I  S  C  F  G  S  D  I  C  S  S  T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  W  Y  V  W  I  *  F  L  I  F  *  H  D  S  L  G  F  F  C  Q  R  M  N  I  F  S  H  Q  I  *  S  K  F  A  V  N  L  R  W  I  C  V  L  L  Q  T  L  T  P  *  H  G  R  K  I  N  S  V  K  Q  P  Y  L  C  *  S  *  Y  S  T  F  T  L  V  D  E  I  S  *  L  C  S  F  N  E  K  T  I  R  *  V  K  G  S  M  D  *  V  I  S  W  R  D  R  *  K  R  *  *  M  H  *  Q  F  N  V  M  T  S  I  *  I  K  V  Q  R  V  Y  R  F  *  Q  S  C  G  E  I  D  R  G  N  H  C  S  N  E  V  Q  L  C  Y  I </second_frame>
            <third_frame>   L  V  R  L  K  *  *  L  K  H  N  V  D  V  I  T  G  D  L  S  W  L  *  *  V  A  L  V  L  I  Y  A  A  A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I  G  M  C  G  F  N  F  S  F  S  N  M  T  V  L  V  S  F  A  R  E  *  I  S  F  H  T  K  F  R  A  N  L  Q  L  I  S  V  G  S  V  F  F  C  K  P  *  L  L  S  M  E  E  K  *  I  Q  *  N  N  H  T  C  V  N  H  D  T  Q  P  S  L  *  L  M  R  *  V  S  C  V  H  L  M  K  R  Q  *  D  K  *  K  E  V  W  I  E  *  L  V  G  V  I  D  K  R  G  D  R  C  I  S  N  L  M  *  *  P  P  Y  K  L  K  F  K  E  F  T  G  F  N  S  L  V  G  K  *  I  G  E  I  T  A  Q  M  K  Y  N  F  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90649" stop="90341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALVLIYAAAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIGMCGFNFSFSNMTVLVSFARE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 68 chains have been computed
$ 
$ memory statistics:
$ 99896 bytes spliced alignments in total
$ 51 spliced alignments have been stored
$ 1958 bytes was the average size of a spliced alignment
$ 14032 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2004 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:21:01
-->
