<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-13 02:37:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1363" stop="359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1064" g_stop="659" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1064" e_stop="659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAA-GAAAAAAAAGGGTACAAAGAAATGACCCTAATTGTCCTTGTA-TTTTATAAAAATATTTTGGTAAGACAGAATTTTGTCTTGACCTACAGATTGGTGATTTGACAAATGAAATATTTGTCTAACAGTGCAC--A-ACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAATTTGATTTCAAAAGAAGGATGACGAGTTTCATGGTGATGAAACTTCATATCTTGGTGCAATCAAGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAAC-TC-TATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="4830" stop="3845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4535" g_stop="4145" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="421" r_length="390" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4535" e_stop="4145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAAATTGAGTTTTAG-TTTTTCTTTAACTCATGTTTTGGTTGATCTCATTATGAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAATATATTTTTATGATTTAGAATACAATAGCATTCAATCACTAATAATTATCAGGAGCCAAAGACATATACAACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAACTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTCGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>GTT-CTTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16592" stop="15319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16292" g_stop="15619" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16292" e_stop="15619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCAATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGAGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTAATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACCATATGACAGATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCATTGACGGTTATTTGATATCGATTCCAAAAAGACATAACTTATTGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTTCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTAATCATTTGCTCCTTCCTTC-TTCAGGGATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGTGTATTATAAACTTTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16592" stop="15591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16292" g_stop="15891" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16292" e_stop="15891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCAATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGAGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTAATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACCATATGACAGATTTGAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15599" stop="16874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15899" g_stop="16574" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15899" e_stop="16574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTCAAATCTGTCATATGGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATTAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCTCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAA-TGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATTGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAGGGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAGTTTGAGAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTATCCCAATAATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15600" stop="16752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15900" g_stop="16452" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15900" e_stop="16452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTCAAATCTGTCATATGGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATTAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCTCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAA-TGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATTGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAGGGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15604" stop="16656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15904" g_stop="16356" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15904" e_stop="16356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATGGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATTAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCTCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAA-TGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATTGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15648" stop="16828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15948" g_stop="16528" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15948" e_stop="16528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATTAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCTCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAA-TGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATTGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAGGGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAGTTTGAGAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16005" stop="16982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16305" g_stop="16714" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16305" e_stop="16714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAGGGAAG-AAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAGTTTGAGAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTATCCCAATAATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTGGACCAGATATTTGTTTTACGGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTAT--CTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="26337" stop="27651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26637" g_stop="27351" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26637" e_stop="27351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTACCAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCGCGATGAACCTGCAGGACGGACCGTCATATCCATGACAGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCAACCTACGGACCGTCACAAGCACGACGGAGCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTT-TTCGCTCAAAATCTCCGCATTCAGTTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACAATAAACTTAAGGAAAAGGTATTAATTATACCGTGAAACCATGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAACCCCGACTAATCCCATCAAATCTATGCATGCTATCATTATTAGGCTTGACTTTTGTGGGATTCGAACATGACACAGACTCATCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAATAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTTAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="36060" stop="37040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36360" g_stop="36740" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36360" e_stop="36740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTACCAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCGCAACGAACCTGCAGGACGGACCGTCATATCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCGCTCAAAATCTTCGCATTCAGTTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACAATAAACTTAAGGAAAAGGTATTAATTATACCGTGAAACCACGGTATATCA</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481016" ref_strand="+" ref_description="SGN-E481016 [cSTD-16-K17]">
      <seq>taaattctcgttcgcaattttgaatgccttcatcttcttgtagcaaaaacgtagtgaaatgggttcaacaaccctaatccaattcccaattttctcaccaccagctccaccacacagccaccgtccggcgactgaaatccgcttctcacggtggaacaatgccaacgccgaaaaattcatccgccatgaacgaactcagaaggaaatcgaagatgaaatccgcttccataagcgcttcgattctgtccttaacattgccaataattacaaccctgcccctccatcaccagtcactgaaaaaactttcaaatccgttggcactccttcaactccttcttcaccttccatccctgggaaaaagtccaagtattccagaaatttccagaacaaccctcgtcaaatacaccccgcatttaagcctttagttagaacccgcaagattccagatgaaaccgctgatgaaacagcagggaaatcagctattgatatcaaagttgatgaaaatggggtctgttatgaatttccagaagccccctttgtatatcaatatagttatactgaaacaccaaagttgaagcctaaaaagttgcgtgaaccgntagtctcaccatttggaccggagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59927" stop="61154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60227" g_stop="60854" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E481016" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60227" e_stop="60854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCTCGTTCGCATTTTTGAATGCCTTTCATCTTTTTGTAGCAAAAACGTAGTGAAATAATGGGTTCAACAACCCTAATCCAATTCCCAATTTTCTCACCACCAGCTCCACCACACAGCCACCGTCCGGCGACTGAAATCCGCTTCTCACGGTGGAACAATGCCAACGCCGAAAAATTCATTCGCCATGAACGAACTCAGAAGGAAATTGAAGATGAAATCCGCTTCCATAAGCGCTTCGATTCTGTCCTTAGCATTGCCAATAATTACAACCCTGCCCCTCCATCACCAGTCGCTGAAAAAACCTTCAAATCCACTGGCACTCCTTCAACTCCTTCTTCACCTTCCATCCCTGGGAAAAAGTCCAAGTATTCCAGAAATTTCCACAACAACCCTCGTCAAATACACCCCGCATTTAAACCTTTAGTTAGAACCCGCAAGATTCCAGTTGAAACCCCTGATGAAACAGCAGGAAAATCAGATATTGATATCAAAGTTGATGAAAATGGGGTTTGTTATGAATTTCCAGAAGCCCCTTTTGTATATCAATATAGCTATACTGAAACACCAAAGGTGAAGCCTAGAAAGTTGCGTGAACCGTTAGTTTCACCATTTGGACCGGAGTC</genome_strand>
        <mrna_strand>TAAATTCTCGTTCGCAATTTTGAATGCC-TTCATCTTCTTGTAGCAAAAACGTAGTG--A-AATGGGTTCAACAACCCTAATCCAATTCCCAATTTTCTCACCACCAGCTCCACCACACAGCCACCGTCCGGCGACTGAAATCCGCTTCTCACGGTGGAACAATGCCAACGCCGAAAAATTCATCCGCCATGAACGAACTCAGAAGGAAATCGAAGATGAAATCCGCTTCCATAAGCGCTTCGATTCTGTCCTTAACATTGCCAATAATTACAACCCTGCCCCTCCATCACCAGTCACTGAAAAAACTTTCAAATCCGTTGGCACTCCTTCAACTCCTTCTTCACCTTCCATCCCTGGGAAAAAGTCCAAGTATTCCAGAAATTTCCAGAACAACCCTCGTCAAATACACCCCGCATTTAAGCCTTTAGTTAGAACCCGCAAGATTCCAGATGAAACCGCTGATGAAACAGCAGGGAAATCAGCTATTGATATCAAAGTTGATGAAAATGGGGTCTGTTATGAATTTCCAGAAGCCCCCTTTGTATATCAATATAGTTATACTGAAACACCAAAGTTGAAGCCTAAAAAGTTGCGTGAACCGNTAGTCTCACCATTTGGACCGGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428755" ref_strand="+" ref_description="SGN-E428755 [STM-50-L2]">
      <seq>actctcgttcgcaattttgaatgccttcatcttcttgtagcaaaaacgtagtgaaatgggttcaacaaccctaatccaattcccaattttctcaccaccagctccaccacacagccaccgtccggcgactgaaatccgcttctcacggtggaacaatgccaacgccgaaaaattcatccgccatgaacgaactcagaaggaaatcgaagatgaaatccgcttccataagcgcttcgattctgtccttaacattgccaataattacaaccctgcccctccatcaccagtcactgaaaaaactttcaaatccgttggcactccttcaactccttcttcaccttccatccctgggaaaaagtccaagtattccagaaatttccagaacaaccctcgtcaaatacaccccgcatttaagcctttagttagaacccgcaagattccagatgaaaccgctgatgaaacagcagggaaatcagctattgatatcaaagttgatgaaaatggggtctgttatgaatttccagaagccccctttgtatatcaatatagttatactgaaacaccaaagttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59930" stop="61108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60230" g_stop="60808" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E428755" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60230" e_stop="60808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGTTCGCATTTTTGAATGCCTTTCATCTTTTTGTAGCAAAAACGTAGTGAAATAATGGGTTCAACAACCCTAATCCAATTCCCAATTTTCTCACCACCAGCTCCACCACACAGCCACCGTCCGGCGACTGAAATCCGCTTCTCACGGTGGAACAATGCCAACGCCGAAAAATTCATTCGCCATGAACGAACTCAGAAGGAAATTGAAGATGAAATCCGCTTCCATAAGCGCTTCGATTCTGTCCTTAGCATTGCCAATAATTACAACCCTGCCCCTCCATCACCAGTCGCTGAAAAAACCTTCAAATCCACTGGCACTCCTTCAACTCCTTCTTCACCTTCCATCCCTGGGAAAAAGTCCAAGTATTCCAGAAATTTCCACAACAACCCTCGTCAAATACACCCCGCATTTAAACCTTTAGTTAGAACCCGCAAGATTCCAGTTGAAACCCCTGATGAAACAGCAGGAAAATCAGATATTGATATCAAAGTTGATGAAAATGGGGTTTGTTATGAATTTCCAGAAGCCCCTTTTGTATATCAATATAGCTATACTGAAACACCAAAGGTGAAGC</genome_strand>
        <mrna_strand>ACTCTCGTTCGCAATTTTGAATGCC-TTCATCTTCTTGTAGCAAAAACGTAGTG--A-AATGGGTTCAACAACCCTAATCCAATTCCCAATTTTCTCACCACCAGCTCCACCACACAGCCACCGTCCGGCGACTGAAATCCGCTTCTCACGGTGGAACAATGCCAACGCCGAAAAATTCATCCGCCATGAACGAACTCAGAAGGAAATCGAAGATGAAATCCGCTTCCATAAGCGCTTCGATTCTGTCCTTAACATTGCCAATAATTACAACCCTGCCCCTCCATCACCAGTCACTGAAAAAACTTTCAAATCCGTTGGCACTCCTTCAACTCCTTCTTCACCTTCCATCCCTGGGAAAAAGTCCAAGTATTCCAGAAATTTCCAGAACAACCCTCGTCAAATACACCCCGCATTTAAGCCTTTAGTTAGAACCCGCAAGATTCCAGATGAAACCGCTGATGAAACAGCAGGGAAATCAGCTATTGATATCAAAGTTGATGAAAATGGGGTCTGTTATGAATTTCCAGAAGCCCCCTTTGTATATCAATATAGTTATACTGAAACACCAAAGTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256619" ref_strand="+" ref_description="SGN-E256619 [cLEG-38-F4]">
      <seq>acatactcatatggagaggacgggattgggtatcctctctacctgaagacggagacaatccagagataagggagggctcggaatctgttaatgctgctaacactaaccgatcctttgaagttcaagtggttgcatctactgcgggaagttcaagtttaccagttacagaagtgaatacttgcaatctcagtgctaacacttttcctctgggtgatgaagatgcagagtatgttagaaaggatggaacgaaggaagatagatcggaggatcactatccggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcagatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaacctgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaagctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68455" stop="69720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68755" g_stop="69420" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E256619" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68755" e_stop="69420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATC</genome_strand>
        <mrna_strand>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTGCAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAACCTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAAGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698976" ref_strand="+" ref_description="SGN-E698976 [FA08AG04]">
      <seq>gactgagacaatccagagataagggagggctcggaatctgttaatgctgctaacactaaccgatcctttgaagttcaagtggttgcatctactgcgggaagttcaagtttaccagttacagaagtgaatacttgcaatctcagtgctaacacttttcctctgggtgatgaagatgcagagtatgttagaaaggatggaacgaaggaagatagatcggaggatcactatccggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcagatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaacctgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaggctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatcaaagggctgttgctctctctacatctgtcccacctggaccagtttttcagcatcaacctaagaaagtatcagttcaaagacgcggggaagaggaaattggtgatttggaggtaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68502" stop="69838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68802" g_stop="69538" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E698976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68802" e_stop="69538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATG</genome_strand>
        <mrna_strand>GACTGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTGCAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAACCTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298342" ref_strand="+" ref_description="SGN-E298342 [cLET-41-O14]">
      <seq>cggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcacatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaaactgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaggctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatcaaagggctgatgctctctctacatctgtcccacctggaccagtttttcagcatcaacctaagaaagtatcagttcaaagacgcggggaagaggaaattggtgatttggaggtaggatgcaccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="+" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68731" stop="69847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69031" g_stop="69547" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="+" ref_id="SGN-E298342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69031" e_stop="69547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</genome_strand>
        <mrna_strand>CGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCACATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGATGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411038" ref_strand="+" ref_description="SGN-E411038 [STM-14-C11]">
      <seq>tttctttttttgatcgntgaaatattgttattcattcataaagctatgctagtaatttggcaagttcgtctactcctaagcttccttttggtactacattcagatagtcttctcgaataccctttaacttctcctttcttgtactcgttgtcaaattgacctttctacctgaaacagcagtttcttttctcgaagaagctggagtatctaatttggtgcatcctacctccaaatcaccaatttcctcttccccgcgtctttgaactgacactttcttaggttgatgctgaaaaactggtccaggtggggcagatgtagagagagcaacagcccttagatagacaatgtcagcatcgatactagaatcatctaatagaactgcactcccactttcaatagcctgcttccaaagtagtaaaattccttccgtacatggcgtgattgagcttaccagctgacagttttggtttgtatctaccgttagagaatgcaccttgtaaccagtcaagggaaccaaagatgaggaatcaaacttgttttctacatcatctgaagcgctctccaactcattttctgtatccaccactgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="70047" stop="68864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69756" g_stop="69164" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E411038" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69756" e_stop="69164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGACTTGATCGTTGAAATATTGTTATTCATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACACGGCGTGATAGAGCTTACCAGCTGACAGTTTTGGTTCGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCAAACTCACTTTCTTTATCCACCACTGAATCA</genome_strand>
        <mrna_strand>TTTCTTTTTTTGATCGNTGAAATATTGTTATTCATTCATAAAGCTATGCTAGTAATTTGGCAAGTTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAGTCTTCTCGAATACCCTTTAACTTCTCCTTTCTTGTACTCGTTGTCAAATTGACCTTTCTACCTGAAACAGCAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGACACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGGCAGATGTAGAGAGAGCAACAGCCCTTAGATAGACAATGTCAGCATCGATACTAGAATCATCTAATAGAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACATGGCGTGATTGAGCTTACCAGCTGACAGTTTTGGTTTGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCCAACTCATTTTCTGTATCCACCACTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428756" ref_strand="+" ref_description="SGN-E428756 [STM-50-L2]">
      <seq>cattcataaagctatgctagtaatttggcaagttcgtctactccttttcttccttttggtactacattcagatagtcttctcgaataccctttaacttctcctttcttgtactcgttgtcaaattgacctttctacctgaaacagcagtttcttttctcgaagaagctggagtatctaatttggtgcatcctacctccaaatcaccaatttcctcttccccgcgtctttgaactgacactttcttaggttgatgctgaaaaactggtccaggtggggcagatgtagagagagcaacagcccttagatagacaatgtcagcatcgatactagaatcatctaatagaactgcactcccactttcaatagcctgcttccaaagtagtaaaattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="70024" stop="69030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69724" g_stop="69330" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E428756" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69724" e_stop="69330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTC</genome_strand>
        <mrna_strand>CATTCATAAAGCTATGCTAGTAATTTGGCAAGTTCGTCTACTCCTTTTCTTCCTTTTGGTACTACATTCAGATAGTCTTCTCGAATACCCTTTAACTTCTCCTTTCTTGTACTCGTTGTCAAATTGACCTTTCTACCTGAAACAGCAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGACACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGGCAGATGTAGAGAGAGCAACAGCCCTTAGATAGACAATGTCAGCATCGATACTAGAATCATCTAATAGAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401399" ref_strand="+" ref_description="SGN-E401399 [PPC-4-E21]">
      <seq>tgtttattggtgggctttttcttcctgagaccccaaacagtctcgtagaacagggtaaattacaggaagcaagacaagtattggagaaaattagaggtaccacaaaagttgatgcagagtttgctgatcttaaagatgcaagtgatgctgcgagagccataaaagatccattcaggaatctcctcaagaggaagaaccgtccccaattggtaatagcagctttggggatcccagcattccaacagcttaccggcatgaactccattcttttctacgcccctgtcatatttcagagcttaggatttggctcaggagcatcattgtattcatctgctataaccagtggtgcacttgttctagctacatttatttcaatggcttttgttgacaagtttggaagaagagctttctttctggaagctggagttgaaatgatatgtgtcttggtagcagttgcggttactctagcttttgagtttggagaaggtgaagaactccccaaaaggaattggcatcttccttgtagccataatctgcatatttgtcgtcgcatatggaagggtcttgggtcccttaagttggctggtaccaagtgaactatttcccctggaaacaagatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="71418" stop="70121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71118" g_stop="70673" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70672" i_stop="70597" i_length="76">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70596" g_stop="70421" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="623" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E401399" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71118" e_stop="70673"/>
          <exon e_start="70596" e_stop="70421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTGGTAATTTTCTGCTTTGAAATTCTTCCTGACAAGGCTTTCGTTATAGCATATACTTGACTGGAAGTTTGTTTCACAGGTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGAGAAGGTGAAGAACT-CCCAAAAGGAATTGGCATCTTCCTTGTAGTCATAATCTGCATATTTGTTGTCGCATATGGAAGGTCTTGGGGTCCCTTAGGTTGGCTGGTGCCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</genome_strand>
        <mrna_strand>TGTTTATTGGTGGGCTTTTTCTTCCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTGGAGAAAATTAGAGGTACCACAAAAGTTGATGCAGAGTTTGCTGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAGAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGCTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTTATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTCTTG............................................................................GTAGCAGTTGCGGTTACTCTAGCTTTTGAGTTTGGAGAAGGTGAAGAACTCCCCAAAAGGAATTGGCATCTTCCTTGTAGCCATAATCTGCATATTTGTCGTCGCATATGGAAGGGTCTTGGGTCCCTTAAGTTGGCTGGTACCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401137" ref_strand="+" ref_description="SGN-E401137 [PPC-3-O5]">
      <seq>tgtttattggtgggctttttcttcctgagaccccaaacagtctcgtagaacagggtaaattacaggaagcaagacaagtattggagaaaattagaggtaccacaaaagttgatgcagagtttgctgatcttaaagatgcaagtgatgctgcgagagccataaaagatccattcaggaatctcctcaagaggaagaaccgtccccaattggtaatagcagctttggggatcccagcattccaacagcttaccggcatgaactccattcttttctacgcccctgtcatatttcagagcttaggatttggctcaggagcatcattgtattcatctgctataaccagtggtgcacttgttctagctacatttatttcaatggcttttgttgacaagtttggaagaagagctttctttctggaagctggagttgaaatgatatgtgtcttggtagcagttgcggttactctagctttgaagtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0088K14-IW3mO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0088K14.1" temp_strand="-" temp_description="C05HBa0088K14.1  AC238788.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0088K14 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="71418" stop="70370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71118" g_stop="70673" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70672" i_stop="70597" i_length="76">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70596" g_stop="70561" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="482" r_length="36" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0088K14.1" gen_strand="-" ref_id="SGN-E401137" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0088K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71118" e_stop="70673"/>
          <exon e_start="70596" e_stop="70561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTGGTAATTTTCTGCTTTGAAATTCTTCCTGACAAGGCTTTCGTTATAGCATATACTTGACTGGAAGTTTGTTTCACAGGTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGA</genome_strand>
        <mrna_strand>TGTTTATTGGTGGGCTTTTTCTTCCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTGGAGAAAATTAGAGGTACCACAAAAGTTGATGCAGAGTTTGCTGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAGAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGCTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTTATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTCTTG............................................................................GTAGCAGTTGCGGTTACTCTAGCTTTGAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1064" PGL_stop="659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1064" e_stop="659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="1064" e_stop="659" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1064" stop="659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGAAAAAAAAGGGTACAAAGAAATGACCCTAATTGTCCTTGTATTTTATAAAAATATTTTGGTAAGACAGAATTTTGTCTTGACCTACAGATTGGTGATTTGACAAATGAAATATTTGTCTAACAGTGCACAACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAATTTGATTTCAAAAGAAGGATGACGAGTTTCATGGTGATGAAACTTCATATCTTGGTGCAATCAAGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> F  E  E  T  F  S  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  R  V  Q  R  N  D  P  N  C  P  C  I  L  *  K  Y  F  G  K  T  E  F  C  L  D  L  Q  I  G  D  L  T  N  E  I  F  V  *  Q  C  T  T  E  K  F  *  C  N  F  I  W  I  N  H  I  H  *  V  P  Q  *  L  *  D  Y  L  T  *  M  M  I  Q  F  D  F  K  R  R  M  T  S  F  M  V  M  K  L  H  I  L  V  Q  S  R  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  </first_frame>
            <second_frame>  L  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  E  K  K  G  Y  K  E  M  T  L  I  V  L  V  F  Y  K  N  I  L  V  R  Q  N  F  V  L  T  Y  R  L  V  I  *  Q  M  K  Y  L  S  N  S  A  Q  L  K  S  F  D  A  I  L  Y  G  *  I  T  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  N  L  I  S  K  E  G  *  R  V  S  W  *  *  N  F  I  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T </second_frame>
            <third_frame>   *  R  N  F  F  N  K  A  S  R  I  L  I  W  I  E  I  V  K  K  K  K  G  T  K  K  *  P  *  L  S  L  Y  F  I  K  I  F  W  *  D  R  I  L  S  *  P  T  D  W  *  F  D  K  *  N  I  C  L  T  V  H  N  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  L  L  D  I  N  D  D  S  I  *  F  Q  K  K  D  D  E  F  H  G  D  E  T  S  Y  L  G  A  I  K  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0088K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4535" PGL_stop="4145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4535" e_stop="4145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="4535" e_stop="4145" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4535" stop="4145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAAATTGAGTTTTAGTTTTTCTTTAACTCATGTTTTGGTTGATCTCATTATGAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAATATATTTTTATGATTTAGAATACAATAGCATTCAATCACTAATAATTATCAGGAGCCAAAGACATATACAACTATTGGTTGAATATGACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAACTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTCGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> L  D  F  I  T  R  Y  Q  H  E  S  L  A  N  *  N  *  V  L  V  F  L  *  L  M  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  R  Y  V  F  S  N  I  F  L  *  F  R  I  Q  *  H  S  I  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  T  L  I  A  *  V  *  M  L  F  *  L  F  R  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  L  I  L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  F  F  N  S  C  F  G  *  S  H  Y  E  N  Q  G  I  I  C  I  K  S  G  M  Y  F  L  I  Y  F  Y  D  L  E  Y  N  S  I  Q  S  L  I  I  I  R  S  Q  R  H  I  Q  L  L  V  E  Y  D  M  L  Y  K  T  S  *  I  E  E  G  I  K  L  *  *  H  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   *  F  Y  N  T  L  S  A  R  V  S  S  Q  L  K  L  S  F  S  F  S  L  T  H  V  L  V  D  L  I  M  R  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  Y  I  F  M  I  *  N  T  I  A  F  N  H  *  *  L  S  G  A  K  D  I  Y  N  Y  W  L  N  M  T  C  Y  T  K  L  L  K  *  K  K  V  *  N  F  N  S  M  S  L  N  V  I  L  I  V  S  K  D  S  K  G  K  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0088K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16292" PGL_stop="15619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16292" e_stop="15619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="16292" e_stop="15619" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="15619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="15891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCAATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGAGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTAATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACCATATGACAGATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCATTGACGGTTATTTGATATCGATTCCAAAAAGACATAACTTATTGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTTCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTAATCATTTGCTCCTTCCTTCTTCAGGGATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGTGTATTATAAACTTTG</gDNA_template>
            <first_frame> F  R  H  L  N  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  K  P  H  C  I  H  Q  R  R  K  H  L  Q  *  C  Q  D  F  *  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  H  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  H  *  R  L  F  D  I  D  S  K  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  F  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  R  D  F  I  F  G  I  D  W  S  I  T  L  P  V  Y  Y  K  L   </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  H  Y  S  L  H  A  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  K  G  E  N  I  S  N  N  V  R  I  F  E  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  N  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  I  I  D  G  Y  L  I  S  I  P  K  R  H  N  L  L  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  S  L  L  *  H  L  P  H  Y  H  D  H  I  N  H  L  L  L  P  S  S  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  C  I  I  N  F  </second_frame>
            <third_frame>   Q  T  P  Q  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  L  H  P  P  K  E  K  T  S  P  I  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  S  T  P  Y  D  R  F  E  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  S  L  T  V  I  *  Y  R  F  Q  K  D  I  T  Y  *  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  V  L  *  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0088K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15899" PGL_stop="16714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15899" e_stop="16714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="15899" e_stop="16714" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15899" stop="16574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15900" stop="16452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15948" stop="16528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16305" stop="16714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTCAAATCTGTCATATGGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATTAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCTCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATTGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAGGGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAGTTTGAGAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTATCCCAATAATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTGGACCAGATATTTGTTTTACGGTAAATTTACT</gDNA_template>
            <first_frame> T  R  I  L  N  S  N  L  S  Y  G  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  L  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  M  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  *  G  V  *  S  I  *  E  F  E  R  N  F  F  N  K  A  S  R  I  L  I  W  I  E  I  V  R  E  E  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  V  *  E  M  K  Y  L  S  N  S  A  H  T  L  K  N  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  N  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  W  T  R  Y  L  F  Y  G  K  F  T </first_frame>
            <second_frame>  R  G  S  *  I  Q  I  C  H  M  V  W  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  L  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  S  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  C  N  E  *  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  S  I  K  L  Q  E  S  L  Y  G  L  K  *  S  G  K  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  *  *  F  E  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  M  D  K  S  H  S  L  S  I  P  I  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  G  P  D  I  C  F  T  V  N  L   </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  W  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  *  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  Y  W  R  C  F  L  L  W  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  V  M  N  N  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  L  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  D  S  L  R  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  S  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  L  D  Q  I  F  V  L  R  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0088K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26637" PGL_stop="27351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26637" e_stop="27351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="26637" e_stop="27351" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26637" stop="27351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTACCAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCGCGATGAACCTGCAGGACGGACCGTCATATCCATGACAGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCAACCTACGGACCGTCACAAGCACGACGGAGCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGTTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACAATAAACTTAAGGAAAAGGTATTAATTATACCGTGAAACCATGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAACCCCGACTAATCCCATCAAATCTATGCATGCTATCATTATTAGGCTTGACTTTTGTGGGATTCGAACATGACACAGACTCATCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAATAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTTAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  L  P  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  *  T  C  R  T  D  R  H  I  H  D  R  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  S  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  S  V  L  D  R  F  P  A  K  Q  R  K  T  Y  I  K  I  S  T  K  R  L  S  D  T  I  N  L  R  K  R  Y  *  L  Y  R  E  T  M  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  P  R  L  I  P  S  N  L  C  M  L  S  L  L  G  L  T  F  V  G  F  E  H  D  T  D  S  S  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  I  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  L  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  R  Y  Q  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  R  D  E  P  A  G  R  T  V  I  S  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  Q  P  T  D  R  H  K  H  D  G  A  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  F  *  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  F  R  T  Q  *  T  *  G  K  G  I  N  Y  T  V  K  P  W  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  L  L  W  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  *  F  R  Y  C  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  *  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  F  V  T  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  A  M  N  L  Q  D  G  P  S  Y  P  *  Q  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  N  L  R  T  V  T  S  T  T  E  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  F  R  Q  I  S  C  K  T  K  K  N  L  Y  Q  N  *  H  K  K  A  F  G  H  N  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  T  P  T  N  P  I  K  S  M  H  A  I  I  I  R  L  D  F  C  G  I  R  T  *  H  R  L  I  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27000" stop="27299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETMVYQHPQLKFVVCPQATHYDSLHNLCTIVFMFYPLQSFGYQPRLIPSNLCMLSLLGLTFVGFEHDTDSSCTNTYPLQFLTEVLIIPVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26763" stop="26999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYAATYGPSQARRSVISSVGGLFCIFRSKSPHSVLDRFPAKQRKTYIKISTKRLSDTINLRKRY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26638" stop="26853"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRYQILQLLESGYWDHFSDLRDEPAGRTVISMTDRHKLRNPTLGQTSPSSFSSFSTLQPTDRHKHDGAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26741" stop="26953"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTVTSFVIPHLVRLPHLPSAASLRCNLRTVTSTTERHKLRRWSLLHFSLKISAFSFRQISCKTKKNLYQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="36360" PGL_stop="36740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36360" e_stop="36740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="36360" e_stop="36740" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36360" stop="36740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTACCAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCGCAACGAACCTGCAGGACGGACCGTCATATCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTTCGCATTCAGTTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGCTTTCGGACACAATAAACTTAAGGAAAAGGTATTAATTATACCGTGAAACCACGGTATATCA</gDNA_template>
            <first_frame> F  V  T  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  A  T  N  L  Q  D  G  P  S  Y  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  F  A  F  S  F  R  Q  I  S  C  K  T  K  K  N  L  Y  Q  N  *  H  K  K  A  F  G  H  N  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S </first_frame>
            <second_frame>  S  L  P  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  Q  R  T  C  R  T  D  R  H  I  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  S  H  S  V  L  D  R  F  P  A  K  Q  R  K  T  Y  I  K  I  S  T  K  R  L  S  D  T  I  N  L  R  K  R  Y  *  L  Y  R  E  T  T  V  Y   </second_frame>
            <third_frame>   R  Y  Q  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  R  N  E  P  A  G  R  T  V  I  S  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  F  *  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  F  R  T  Q  *  T  *  G  K  G  I  N  Y  T  V  K  P  R  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36478" stop="36714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYAATYGPSQARRTVISSVGGLFCIFRSKSSHSVLDRFPAKQRKTYIKISTKRLSDTINLRKRY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36456" stop="36668"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLPSAASLRCHLRTVTSTTDRHKLRRWSLLHFSLKIFAFSFRQISCKTKKNLYQN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36362" stop="36568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYQILQLLESGYWDHFSDLRNEPAGRTVISMTDRHKLRNPTLGQTSPSSFSSFSTLPPTDRHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60227" PGL_stop="60854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60227" e_stop="60854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="60227" e_stop="60854" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60227" stop="60854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60230" stop="60808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATTCTCGTTCGCATTTTTGAATGCCTTTCATCTTTTTGTAGCAAAAACGTAGTGAAATAATGGGTTCAACAACCCTAATCCAATTCCCAATTTTCTCACCACCAGCTCCACCACACAGCCACCGTCCGGCGACTGAAATCCGCTTCTCACGGTGGAACAATGCCAACGCCGAAAAATTCATTCGCCATGAACGAACTCAGAAGGAAATTGAAGATGAAATCCGCTTCCATAAGCGCTTCGATTCTGTCCTTAGCATTGCCAATAATTACAACCCTGCCCCTCCATCACCAGTCGCTGAAAAAACCTTCAAATCCACTGGCACTCCTTCAACTCCTTCTTCACCTTCCATCCCTGGGAAAAAGTCCAAGTATTCCAGAAATTTCCACAACAACCCTCGTCAAATACACCCCGCATTTAAACCTTTAGTTAGAACCCGCAAGATTCCAGTTGAAACCCCTGATGAAACAGCAGGAAAATCAGATATTGATATCAAAGTTGATGAAAATGGGGTTTGTTATGAATTTCCAGAAGCCCCTTTTGTATATCAATATAGCTATACTGAAACACCAAAGGTGAAGCCTAGAAAGTTGCGTGAACCGTTAGTTTCACCATTTGGACCGGAGTC</gDNA_template>
            <first_frame> *  I  L  V  R  I  F  E  C  L  S  S  F  C  S  K  N  V  V  K  *  W  V  Q  Q  P  *  S  N  S  Q  F  S  H  H  Q  L  H  H  T  A  T  V  R  R  L  K  S  A  S  H  G  G  T  M  P  T  P  K  N  S  F  A  M  N  E  L  R  R  K  L  K  M  K  S  A  S  I  S  A  S  I  L  S  L  A  L  P  I  I  T  T  L  P  L  H  H  Q  S  L  K  K  P  S  N  P  L  A  L  L  Q  L  L  L  H  L  P  S  L  G  K  S  P  S  I  P  E  I  S  T  T  T  L  V  K  Y  T  P  H  L  N  L  *  L  E  P  A  R  F  Q  L  K  P  L  M  K  Q  Q  E  N  Q  I  L  I  S  K  L  M  K  M  G  F  V  M  N  F  Q  K  P  L  L  Y  I  N  I  A  I  L  K  H  Q  R  *  S  L  E  S  C  V  N  R  *  F  H  H  L  D  R  S  </first_frame>
            <second_frame>  K  F  S  F  A  F  L  N  A  F  H  L  F  V  A  K  T  *  *  N  N  G  F  N  N  P  N  P  I  P  N  F  L  T  T  S  S  T  T  Q  P  P  S  G  D  *  N  P  L  L  T  V  E  Q  C  Q  R  R  K  I  H  S  P  *  T  N  S  E  G  N  *  R  *  N  P  L  P  *  A  L  R  F  C  P  *  H  C  Q  *  L  Q  P  C  P  S  I  T  S  R  *  K  N  L  Q  I  H  W  H  S  F  N  S  F  F  T  F  H  P  W  E  K  V  Q  V  F  Q  K  F  P  Q  Q  P  S  S  N  T  P  R  I  *  T  F  S  *  N  P  Q  D  S  S  *  N  P  *  *  N  S  R  K  I  R  Y  *  Y  Q  S  *  *  K  W  G  L  L  *  I  S  R  S  P  F  C  I  S  I  *  L  Y  *  N  T  K  G  E  A  *  K  V  A  *  T  V  S  F  T  I  W  T  G  V </second_frame>
            <third_frame>   N  S  R  S  H  F  *  M  P  F  I  F  L  *  Q  K  R  S  E  I  M  G  S  T  T  L  I  Q  F  P  I  F  S  P  P  A  P  P  H  S  H  R  P  A  T  E  I  R  F  S  R  W  N  N  A  N  A  E  K  F  I  R  H  E  R  T  Q  K  E  I  E  D  E  I  R  F  H  K  R  F  D  S  V  L  S  I  A  N  N  Y  N  P  A  P  P  S  P  V  A  E  K  T  F  K  S  T  G  T  P  S  T  P  S  S  P  S  I  P  G  K  K  S  K  Y  S  R  N  F  H  N  N  P  R  Q  I  H  P  A  F  K  P  L  V  R  T  R  K  I  P  V  E  T  P  D  E  T  A  G  K  S  D  I  D  I  K  V  D  E  N  G  V  C  Y  E  F  P  E  A  P  F  V  Y  Q  Y  S  Y  T  E  T  P  K  V  K  P  R  K  L  R  E  P  L  V  S  P  F  G  P  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60271" stop="60852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKRSEIMGSTTLIQFPIFSPPAPPHSHRPATEIRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRFDSVLSIANNYNPAPPSPVAEKTFKSTGTPSTPSSPSIPGKKSKYSRNFHNNPRQIHPAFKPLVRTRKIPVETPDETAGKSDIDIKVDENGVCYEFPEAPFVYQYSYTETPKVKPRKLREPLVSPFGPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68755" PGL_stop="69547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68755" e_stop="69547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="68755" e_stop="69547" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68755" stop="69420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68802" stop="69538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69031" stop="69547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</gDNA_template>
            <first_frame> T  Y  S  Y  G  E  D  G  I  G  Y  P  L  Y  L  K  T  E  T  I  Q  R  *  G  R  A  R  N  L  L  M  L  L  T  L  T  D  P  L  K  F  K  W  L  H  L  L  R  E  V  Q  V  Y  Q  L  Q  K  *  I  L  T  I  S  V  L  T  L  F  L  W  V  M  K  M  Q  S  M  L  E  R  M  E  R  R  K  I  D  R  R  I  T  I  R  N  L  P  I  R  F  L  L  Q  R  L  G  *  V  K  A  K  S  L  W  C  M  Q  E  I  Q  V  T  I  L  E  F  *  V  T  A  V  N  A  K  Q  G  R  M  I  Q  W  W  I  K  K  V  S  L  R  A  L  Q  M  M  *  K  T  S  L  I  P  H  L  W  F  P  *  L  V  T  R  C  I  L  *  R  *  I  R  T  K  T  V  S  W  *  A  L  S  R  R  V  R  K  E  F  Y  Y  F  G  S  R  L  L  K  V  G  V  Q  L  Y  *  M  I  L  V  S  M  L  T  L  S  I  K  G  L  L  L  S  L  H  L  S  H  L  D  Q  F  F  S  I  N  L  R  K  Y  Q  F  K  D  A  G  K  R  K  L  V  I  W  R  *  D  A  P  N  </first_frame>
            <second_frame>  H  T  H  M  E  R  T  G  L  G  I  L  S  T  *  R  R  R  Q  S  R  D  K  G  G  L  G  I  C  *  C  C  *  H  *  P  I  L  *  S  S  S  G  C  I  Y  C  G  K  F  K  F  T  S  Y  R  S  E  Y  L  Q  S  Q  C  *  H  F  S  S  G  *  *  R  C  R  V  C  *  K  G  W  N  E  G  R  *  I  G  G  S  L  S  G  I  F  Q  *  G  F  C  Y  N  D  W  D  K  *  K  R  N  P  S  G  V  C  R  R  Y  R  *  Q  F  *  N  S  E  *  L  P  *  M  Q  N  K  V  G  *  F  S  G  G  *  R  K  *  V  *  E  R  F  R  *  C  R  K  Q  V  *  F  L  I  F  G  S  L  D  W  L  Q  G  A  F  S  N  G  R  Y  E  P  K  L  S  A  G  K  L  Y  H  A  V  Y  G  R  N  F  T  T  L  E  A  G  Y  *  K  W  E  C  S  C  I  K  *  F  *  Y  R  C  *  H  C  L  S  K  G  C  C  S  L  Y  I  C  P  T  W  T  S  F  S  A  S  T  *  E  S  I  S  S  K  T  R  G  R  G  N  W  *  F  G  G  R  M  H  Q  I </second_frame>
            <third_frame>   I  L  I  W  R  G  R  D  W  V  S  S  L  P  E  D  G  D  N  P  E  I  R  E  G  S  E  S  V  N  A  A  N  T  N  R  S  F  E  V  Q  V  V  A  S  T  A  G  S  S  S  L  P  V  T  E  V  N  T  Y  N  L  S  A  N  T  F  P  L  G  D  E  D  A  E  Y  V  R  K  D  G  T  K  E  D  R  S  E  D  H  Y  P  E  S  S  N  K  V  S  V  T  T  T  G  I  S  K  S  E  I  P  L  V  Y  A  G  D  T  G  D  N  S  R  I  L  S  D  C  R  E  C  K  T  R  S  D  D  S  V  V  D  K  E  S  E  F  E  S  A  S  D  D  V  E  N  K  F  D  S  S  S  L  V  P  L  T  G  Y  K  V  H  S  L  T  V  D  T  N  Q  N  C  Q  L  V  S  S  I  T  P  C  T  E  G  I  L  L  L  W  K  Q  A  I  E  S  G  S  A  V  V  L  N  D  S  S  I  D  A  D  I  V  Y  Q  R  A  V  A  L  S  T  S  V  P  P  G  P  V  F  Q  H  Q  P  K  K  V  S  V  Q  R  R  G  E  E  E  I  G  D  L  E  V  G  C  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68757" stop="69545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIWRGRDWVSSLPEDGDNPEIREGSESVNAANTNRSFEVQVVASTAGSSSLPVTEVNTYNLSANTFPLGDEDAEYVRKDGTKEDRSEDHYPESSNKVSVTTTGISKSEIPLVYAGDTGDNSRILSDCRECKTRSDDSVVDKESEFESASDDVENKFDSSSLVPLTGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVVLNDSSIDADIVYQRAVALSTSVPPGPVFQHQPKKVSVQRRGEEEIGDLEVGCTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69756" PGL_stop="69164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69756" e_stop="69164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="69756" e_stop="69164" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69756" stop="69164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69724" stop="69330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTGACTTGATCGTTGAAATATTGTTATTCATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACACGGCGTGATAGAGCTTACCAGCTGACAGTTTTGGTTCGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCAAACTCACTTTCTTTATCCACCACTGAATCA</gDNA_template>
            <first_frame> I  I  D  L  I  V  E  I  L  L  F  I  H  K  A  M  L  A  I  W  Q  A  R  L  L  L  S  F  L  L  V  L  H  S  D  N  L  F  E  Y  P  S  S  S  P  F  S  Y  S  L  L  N  *  P  F  Y  S  K  Q  Q  F  L  F  S  K  K  L  E  Y  L  I  W  C  I  L  P  P  N  H  Q  F  P  L  P  R  V  F  E  L  I  L  S  *  V  D  A  E  K  L  V  Q  V  G  Q  M  *  R  E  Q  Q  P  F  D  R  Q  C  Q  H  R  Y  *  N  H  L  I  Q  L  H  S  H  F  Q  *  P  A  S  K  V  V  K  F  L  P  Y  T  A  *  *  S  L  P  A  D  S  F  G  S  Y  L  P  L  E  N  A  P  C  N  Q  S  R  E  P  K  M  R  N  Q  T  C  F  L  H  H  L  K  R  S  Q  T  H  F  L  Y  P  P  L  N   </first_frame>
            <second_frame>  *  L  T  *  S  L  K  Y  C  Y  S  F  I  K  L  C  *  Q  F  G  K  L  V  Y  S  *  A  S  F  W  Y  Y  I  Q  I  I  F  S  N  T  L  L  L  L  L  S  R  T  R  C  *  I  D  L  S  T  R  N  N  S  F  F  S  R  R  S  W  S  I  *  F  G  A  S  Y  L  Q  I  T  N  F  L  F  P  A  S  L  N  *  Y  F  L  R  L  M  L  K  N  W  S  R  W  D  R  C  R  E  S  N  S  P  L  I  D  N  V  S  I  D  T  R  I  I  *  Y  N  C  T  P  T  F  N  S  L  L  P  K  *  *  N  S  F  R  T  R  R  D  R  A  Y  Q  L  T  V  L  V  R  I  Y  R  *  R  M  H  L  V  T  S  Q  G  N  Q  R  *  G  I  K  L  V  F  Y  I  I  *  S  A  L  K  L  T  F  F  I  H  H  *  I  </second_frame>
            <third_frame>   N  *  L  D  R  *  N  I  V  I  H  S  *  S  Y  A  S  N  L  A  S  S  S  T  P  K  L  P  F  G  T  T  F  R  *  S  F  R  I  P  F  F  F  S  F  L  V  L  V  V  E  L  T  F  L  L  E  T  T  V  S  F  L  E  E  A  G  V  S  N  L  V  H  P  T  S  K  S  P  I  S  S  S  P  R  L  *  T  D  T  F  L  G  *  C  *  K  T  G  P  G  G  T  D  V  E  R  A  T  A  L  *  *  T  M  S  A  S  I  L  E  S  F  N  T  T  A  L  P  L  S  I  A  C  F  Q  S  S  K  I  P  S  V  H  G  V  I  E  L  T  S  *  Q  F  W  F  V  S  T  V  R  E  C  T  L  *  P  V  K  G  T  K  D  E  E  S  N  L  F  S  T  S  S  E  A  L  S  N  S  L  S  L  S  T  T  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0088K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="71118" PGL_stop="70421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71118" e_stop="70673"/>
            <exon e_start="70596" e_stop="70421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.339" acc_prob="0.966" e_score="0.982"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="71118" e_stop="70673" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.339" acc_prob="0.966">
            <gDNA_intron_boundary i_start="70672" i_stop="70597" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="70596" e_stop="70421" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71118" stop="70673"/>
              <exon start="70596" stop="70421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71118" stop="70673"/>
              <exon start="70596" stop="70561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTG : GTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGAGAAGGTGAAGAACTCCCAAAAGGAATTGGCATCTTCCTTGTAGTCATAATCTGCATATTTGTTGTCGCATATGGAAGGTCTTGGGGTCCCTTAGGTTGGCTGGTGCCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</gDNA_template>
            <first_frame> C  L  L  V  G  F  F  Y  L  R  P  Q  T  V  S  *  N  R  V  N  Y  R  K  Q  D  K  Y  *  R  K  L  E  V  P  Q  K  L  M  L  S  L  R  I  L  K  M  Q  V  M  L  R  E  P  *  K  I  H  S  G  I  S  S  R  G  K  T  V  P  N  W  *  *  Q  L  W  G  S  Q  H  S  N  S  L  P  A  *  T  P  F  F  S  T  P  L  S  Y  F  R  V  *  D  L  A  Q  E  H  H  C  I  H  L  L  *  P  V  V  H  L  F  *  L  H  S  F  Q  W  L  L  L  T  S  L  E  E  E  L  S  F  W  K  L  E  L  K  *  Y  V  F  W :   *  R  L  L  L  L  W  L  *  S  L  E  K  V  K  N  S  Q  K  E  L  A  S  S  L  *  S  *  S  A  Y  L  L  S  H  M  E  G  L  G  V  P  *  V  G  W  C  Q  V  N  Y  F  P  W  K  Q  D  L  </first_frame>
            <second_frame>  V  Y  W  W  A  F  S  T  *  D  P  K  Q  S  R  R  T  G  *  I  T  G  S  K  T  S  I  R  E  N  *  R  Y  H  K  S  *  C  *  V  C  G  S  *  R  C  K  *  C  C  E  S  H  K  R  S  I  Q  E  S  P  Q  E  E  K  P  S  P  I  G  N  S  S  F  G  D  P  S  I  P  T  A  Y  R  H  E  L  H  S  F  L  R  P  C  H  I  S  E  F  R  I  W  L  R  S  I  I  V  F  I  C  Y  N  Q  W  C  T  C  S  S  Y  I  H  F  N  G  F  C  *  Q  V  W  K  K  S  F  L  S  G  S  W  S  *  N  D  M  C  F   : G  S  G  C  C  Y  S  G  F  E  V  W  R  R  *  R  T  P  K  R  N  W  H  L  P  C  S  H  N  L  H  I  C  C  R  I  W  K  V  L  G  S  L  R  L  A  G  A  K  *  T  I  S  P  G  N  K  I  C </second_frame>
            <third_frame>   F  I  G  G  L  F  L  P  E  T  P  N  S  L  V  E  Q  G  K  L  Q  E  A  R  Q  V  L  E  K  I  R  G  T  T  K  V  D  A  E  F  A  D  L  K  D  A  S  D  A  A  R  A  I  K  D  P  F  R  N  L  L  K  R  K  N  R  P  Q  L  V  I  A  A  L  G  I  P  A  F  Q  Q  L  T  G  M  N  S  I  L  F  Y  A  P  V  I  F  Q  S  L  G  F  G  S  G  A  S  L  Y  S  S  A  I  T  S  G  A  L  V  L  A  T  F  I  S  M  A  F  V  D  K  F  G  R  R  A  F  F  L  E  A  G  V  E  M  I  C  V  L  :  V  A  V  A  V  T  L  A  L  K  F  G  E  G  E  E  L  P  K  G  I  G  I  F  L  V  V  I  I  C  I  F  V  V  A  Y  G  R  S  W  G  P  L  G  W  L  V  P  S  E  L  F  P  L  E  T  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0088K14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71116" stop="70673"/>
                    <exon start="70596" stop="70423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIGGLFLPETPNSLVEQGKLQEARQVLEKIRGTTKVDAEFADLKDASDAARAIKDPFRNLLKRKNRPQLVIAALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGASLYSSAITSGALVLATFISMAFVDKFGRRAFFLEAGVEMICVLVAVAVTLALKFGEGEELPKGIGIFLVVIICIFVVAYGRSWGPLGWLVPSELFPLETRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 163 chains have been computed
$ 
$ memory statistics:
$ 42816 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2140 bytes was the average size of a spliced alignment
$ 16144 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1614 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 201 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-13 02:39:21
-->
