<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:22:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541743" ref_strand="+" ref_description="SGN-E541743 [TUS-62-L2]">
      <seq>ctagtttctatctatttgaagataagaaacaaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacattccagctccaactagtaacttttcaactctccaaaatgattttgctaagaagggtcttgaccttaaagacttggtcctattatctggtgctcacactattggaatctctcattgctcgtcattttcaacgcgtttgtacaattttactggaacttttggtactgaagatccatctctagacagtgaatatgcagctaatcttaaggcaaataaatgtaaatcaattaacgataacacaaccatagttgaaatggacccagggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1842" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1542" g_stop="1306" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="435" r_length="198" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="598" r_length="163" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="33" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="778" r_length="180" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E541743" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1542" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="33"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTAT-TATCTCTTTTGAAGATAAAAAACAAAATGTCTACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAAGGCTAATAAATGTAAATCAATCAACGATAACACAACAATAGTTGAGATGGATCCAGGGAGTT</genome_strand>
        <mrna_strand>CTAGTTTCTATCT-ATTTGAAGATAAGAAACAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA..............................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAATCTCTCATTGCTCGTCATTTTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAATCTTAAGGCAAATAAATGTAAATCAATTAACGATAACACAACCATAGTTGAAATGGACCCAGGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542776" ref_strand="+" ref_description="SGN-E542776 [TUS-64-E1]">
      <seq>tacatttgtgtatttgtgtcctctaatatttatgtgtatcttagtgtctagcaatgctcaattacaacaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcattggttgctagagactctattgtggtcataggaggtcctttttggaatgtaccaaccggaagaagagatggaacaatctctattgcttcagaaactttatcagacataccatcaccatttagtaacttttctactctccaaaatgattttgctaagaagggtcttgacctcaaagacttggtcctattatctggtgctcacactattggagtctctctttgcacgtcattttcaaaccgtctatacaattttactggaacttttggtactcaagatccatctctagacagcgaatatgcagctaacttgaanggctataaatgtaaatcaatcaacgataaacacacaatagttgagatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1804" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1504" g_stop="1306" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="397" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="560" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="42" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="731" r_length="171" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E542776" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1504" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="42"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAAGGCTAATAAATGTAAATCAATCAACGATAACACAACAATAGTTGAGATGGATC</genome_strand>
        <mrna_strand>TACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA..............................................................................................GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAANGGCTATAAATGTAAATCAATCAACGATAAACACACAATAGTTGAGATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264931" ref_strand="+" ref_description="SGN-E264931 [cLEI-10-B21]">
      <seq>tagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcattggttgctagagactctattgtggtcataggaggtcctttttggaatgtaccaaccggaagaagagatggaacaatctctattgcttcagaaactttatcagacataccatcaccatttagtaacttttctactctccaaaatgattttgctaagaagggtcttgacctcaaagacttggtcctattatctggtgctcacactattggagtctctctttgcacgtcattttcaaaccgtctatacaattttactggaacttttggtactcaagatccatctctagacagcgaatatgcagctaacttgaaagctaataaatgtaaatcaatcaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1691" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1391" g_stop="1306" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="284" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="447" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="68" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="592" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E264931" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1391" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="68"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAAGGCTAATAAATGTAAATCAATCAACGA</genome_strand>
        <mrna_strand>TAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA..............................................................................................GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAAAGCTAATAAATGTAAATCAATCAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310802" ref_strand="+" ref_description="SGN-E310802 [cLEZ-15-G7]">
      <seq>caagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcattggttgctagagactctattgtggtcataggaggtcctttttggaatgtaccaaccggaagaagagatggaacaatctctattgcttcagaaactttatcagacataccatcaccatttagtaacttttctactctccaaaatgattttgctaagaagggtcttgacctcaaagacttggtcctattatctggtgctcacactattggagtctctctttgcacgtcattttcaaaccgtctatacaattgtactggaacttttggtactcaagatccatctctagacagcgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1723" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1423" g_stop="1306" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="316" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="479" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="108" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="584" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E310802" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1423" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATG</genome_strand>
        <mrna_strand>CAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA..............................................................................................GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTGTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302468" ref_strand="+" ref_description="SGN-E302468 [cLEW-27-F24]">
      <seq>gctcaattacaacaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcattggttgctagagactctattgtggtcataggaggtcctttttggaatgtaccaaccggaagaagagatggaacaatctctattgcttcagaaactttatcagacataccatcaccatttagtaacttttctactctccaaaatgattttgctaagaagggtcttgacctcaaagacttggtcctattatctggtgctcacactattggagtctctctttgcacgtcattttcaaaccgtctatacaattttactggaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1749" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1449" g_stop="1306" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="342" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="505" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="142" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="576" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E302468" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1449" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTT</genome_strand>
        <mrna_strand>GCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA..............................................................................................GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303566" ref_strand="+" ref_description="SGN-E303566 [cLEX-2-P4]">
      <seq>tattatctcttttgaagataaaaaacaaaatgtctacatttgtgtatttgtgtcctctaatatttatgtgtatcttagtgtctagcaatgctcaattacaacaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcattggttgctagagactctattgtggtcataggaggtcctttttggaatgtaccaaccggaagaagagatggaacaatctctattgcttcagaaactttatcagacataccatcaccatttagtaacttttctactctccaaaatgattttgctaagaagggtcttgacctcaaagacttggtcctattatctggtgctcacactattggagtctctctttgcacgtcattttcaaaccgtctatacaattttactggaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1838" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1538" g_stop="1306" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="431" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="314" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="594" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="212" g_stop="143" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="664" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E303566" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1538" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="314"/>
          <exon e_start="212" e_stop="143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCTCTTTTGAAGATAAAAAACAAAATGTCTACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTGGTAAGTCAAAATTATTACTTCCTTCGTTTCATTAGATGTGACACATTTGACTAAGTTTGAAATTTAAGAATTAAAGGAATAGTACTCTTACAATGTTTCAGGTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTT</genome_strand>
        <mrna_strand>TATTATCTCTTTTGAAGATAAAAAACAAAATGTCTACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA..............................................................................................GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG.....................................................................................................GTGCTCACACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307921" ref_strand="+" ref_description="SGN-E307921 [cLEY-20-P5]">
      <seq>caaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacattccagctccaactagtaacttttcaactctccaaaatgattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1813" stop="55"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1513" g_stop="1306" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="571" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="406" r_length="198" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="476" g_stop="355" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="528" r_length="122" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E307921" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1513" e_stop="1306"/>
          <exon e_start="768" e_stop="571"/>
          <exon e_start="476" e_stop="355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGTCTACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATAGTAAGTTAACAACTTGAACTATCTAATTTTCAATTTATCAAACCGTATTATATATATTTTTTTATATAATCTTATGCATGACATATACATATAGGGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGC</genome_strand>
        <mrna_strand>CAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA..............................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301322" ref_strand="+" ref_description="SGN-E301322 [cLEW-24-I13]">
      <seq>tgtgtatcttagtgtctagcaatgctcaattacaacaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1772" stop="300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1472" g_stop="1306" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="768" g_stop="600" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="336" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E301322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1472" e_stop="1306"/>
          <exon e_start="768" e_stop="600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGGGTAATTATAATTACTTTATCCATTTCAACTTTCTTATCTTATTTTTTCTAAATTTTGTTTCAAAATGATTTTCCTTTTTATATCTAGTATTCTCTCTGCTTCAGTTTTTTTTTAGTCTGTTTAAAAAATAATGTTTTTTGTTTTTCTTTTTTGACAACTTTTAATTTTAACTTTGCACATTACATATTTATGATGATAAGTTTAAAGGATATTTAAATACATTCTACATATCATTAGTTTAAATTCACTAGATTTAAGTTAAAATTAAACAAATAAATTAAAATATGGAAAGTAACTTTTTTAACTTCAACATCTCATATAACATGTTTAAGATTATAAGATTCAATAACACTACAATGTATTTCGCATTTCTTTAATTAAAGATTATAAGATGTAAAAGTATTTAAAAAAAAAAAAGAATCTTGTCTAGTAAAACTAAGATGCAAAAAATGAAGTACTATATATGTGTTGTATTAATTGTTTCACTAATTGCATTATTGATGTAGTTCTATTTTTTTTTGTGTGTGGTGATTGAAGGGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCAT</genome_strand>
        <mrna_strand>TGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9058" stop="7871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8758" g_stop="8171" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8758" e_stop="8171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTATTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGAATGATTGCTTTTATTGAGGCCCGATCTTCTTTAGTCGAGCAGATTCGTGCACACCAGTTTGATGATGTAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGCGGTCCTTGATTCTGATGGTGTCTTACGGATCGGAGGCAGGATTTGTGTGCCTAAGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCTATTGTTCTCGGTATTCCATCCATCTAGGAGCGGTGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATTTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="10588" stop="11598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="11271" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="11271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTTGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCTCCTACCTCCAGATGAGGCACCCTGAAACTGGCATGATATACGAGCTCTTTTAGGGTTCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTTGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGACAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACT</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAG-TCCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11417" stop="12319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11717" g_stop="12019" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11717" e_stop="12019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCTACACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGCGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGAGGTTCGGTAGAGACCTCTGTAGCACTGCCTCTCAATAGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACGACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTTAACAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301970" ref_strand="+" ref_description="SGN-E301970 [cLEX-3-F22]">
      <seq>aactagtttctatctatttgaagataagaaacaaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacatttcagctccaactagtaacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29782" stop="31224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30082" g_stop="30320" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30739" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="437" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30824" g_stop="30924" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="538" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E301970" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30082" e_stop="30320"/>
          <exon e_start="30542" e_stop="30739"/>
          <exon e_start="30824" e_stop="30924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTTTCTATCTTTTTTGAGATAAGAAACAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACAGTAAGACAACAACTTGAACTATACAATTTTTTTTTTTTATGTATGACTATTTTAATTATACATATTTTTGGGGATGATATATAGGGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTC</genome_strand>
        <mrna_strand>AACTAGTTTCTATCTATTTGAAGATAAGAAACAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA....................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTTCAGCTCCAACTAGTAACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541743" ref_strand="+" ref_description="SGN-E541743 [TUS-62-L2]">
      <seq>ctagtttctatctatttgaagataagaaacaaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacattccagctccaactagtaacttttcaactctccaaaatgattttgctaagaagggtcttgaccttaaagacttggtcctattatctggtgctcacactattggaatctctcattgctcgtcattttcaacgcgtttgtacaattttactggaacttttggtactgaagatccatctctagacagtgaatatgcagctaatcttaaggcaaataaatgtaaatcaattaacgataacacaaccatagttgaaatggacccagggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29785" stop="31556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30084" g_stop="30320" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30739" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="435" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30824" g_stop="30986" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="598" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30987" i_stop="31076" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31077" g_stop="31256" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="778" r_length="180" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E541743" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30084" e_stop="30320"/>
          <exon e_start="30542" e_stop="30739"/>
          <exon e_start="30824" e_stop="30986"/>
          <exon e_start="31077" e_stop="31256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCTATCTTTTTTGAGATAAGAAACAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACAGTAAGACAACAACTTGAACTATACAATTTTTTTTTTTTATGTATGACTATTTTAATTATACATATTTTTGGGGATGATATATAGGGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTGGTAAAGTCAAAATTATTACGTTCTCTGTTTCATTTTATGTGACAAATTTGACTCAGTATGGAATTTCAAGTCTTAACAATAATATTTCAGGTGCTCACACTATTGGAATCTCTCATTGCTCATCATTGTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAACCTTAAGGCAAATAAATGTAAATCAATTAACGATAACACAACAATAGTTGAAATGGACCCAGGGAGTT</genome_strand>
        <mrna_strand>CTAGTTTCTATCTATTTGAAGATAAGAAACAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA....................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTG..........................................................................................GTGCTCACACTATTGGAATCTCTCATTGCTCGTCATTTTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAATCTTAAGGCAAATAAATGTAAATCAATTAACGATAACACAACCATAGTTGAAATGGACCCAGGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541750" ref_strand="+" ref_description="SGN-E541750 [TUS-62-L6]">
      <seq>ctagtttctatctatttgaagataagaaacaaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacattccagctccaactagtaacttttcaactctccaaaatgattttgctaagaagggtcttgaccttaaagacttggtcctattatctggtgctcacactattggaatctctcattgctcgtcattttcaacgcgtttgtacaattttactggaacttttggtactgaagatccatctctagacagtgaatatgcagctaatcttaaggcaaataaatggaaatcaattaacgataacacaaccatagttgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29785" stop="31542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30084" g_stop="30320" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30739" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="435" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30824" g_stop="30986" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="598" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30987" i_stop="31076" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31077" g_stop="31242" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="764" r_length="166" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E541750" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30084" e_stop="30320"/>
          <exon e_start="30542" e_stop="30739"/>
          <exon e_start="30824" e_stop="30986"/>
          <exon e_start="31077" e_stop="31242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCTATCTTTTTTGAGATAAGAAACAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACAGTAAGACAACAACTTGAACTATACAATTTTTTTTTTTTATGTATGACTATTTTAATTATACATATTTTTGGGGATGATATATAGGGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTGGTAAAGTCAAAATTATTACGTTCTCTGTTTCATTTTATGTGACAAATTTGACTCAGTATGGAATTTCAAGTCTTAACAATAATATTTCAGGTGCTCACACTATTGGAATCTCTCATTGCTCATCATTGTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAACCTTAAGGCAAATAAATGTAAATCAATTAACGATAACACAACAATAGTTGAAAT</genome_strand>
        <mrna_strand>CTAGTTTCTATCTATTTGAAGATAAGAAACAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA....................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTG..........................................................................................GTGCTCACACTATTGGAATCTCTCATTGCTCGTCATTTTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAATCTTAAGGCAAATAAATGGAAATCAATTAACGATAACACAACCATAGTTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299800" ref_strand="+" ref_description="SGN-E299800 [cLEW-1-G1]">
      <seq>tagtttctatctatttgaagataagaaacaaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29785" stop="31200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30085" g_stop="30320" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30739" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="434" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30824" g_stop="30900" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="511" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E299800" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30085" e_stop="30320"/>
          <exon e_start="30542" e_stop="30739"/>
          <exon e_start="30824" e_stop="30900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCTATCTTTTTTGAGATAAGAAACAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACAGTAAGACAACAACTTGAACTATACAATTTTTTTTTTTTATGTATGACTATTTTAATTATACATATTTTTGGGGATGATATATAGGGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACAT</genome_strand>
        <mrna_strand>TAGTTTCTATCTATTTGAAGATAAGAAACAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA....................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307921" ref_strand="+" ref_description="SGN-E307921 [cLEY-20-P5]">
      <seq>caaaatggctacatttgtgtatttgtgtcctttaatattgatgtgtatgttagtgtctagcaatgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgctccatctcttgctgctgccttaatcagaatgcatttccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatttaacacttagaggtttctcattcattgataatgtgaagaaaatcattgaagatgaatgccctggagttgtctcttgtgctgatattgttgccttagttgctagagactctattgtcgtcacaggaggtccttcatggagtgtaccaacaggaagaagagatggaagaatctctaatgcttcagaaaccttaacagacattccagctccaactagtaacttttcaactctccaaaatgattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29813" stop="31245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30113" g_stop="30320" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30739" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="406" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30824" g_stop="30945" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="528" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E307921" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30113" e_stop="30320"/>
          <exon e_start="30542" e_stop="30739"/>
          <exon e_start="30824" e_stop="30945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACAGTAAGACAACAACTTGAACTATACAATTTTTTTTTTTTATGTATGACTATTTTAATTATACATATTTTTGGGGATGATATATAGGGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGC</genome_strand>
        <mrna_strand>CAAAATGGCTACATTTGTGTATTTGTGTCCTTTAATATTGATGTGTATGTTAGTGTCTAGCAATGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATTTAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATCATTGAAGATGAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACA....................................................................................GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307853" ref_strand="+" ref_description="SGN-E307853 [cLEY-20-P17]">
      <seq>caaaatggcttcatttgtgtatttgtgtcctttaatattggtgtgtatgttagggtctatgagtgctcaattacagcaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaaagctccatctcttgctgctgacttaatcacaatgcattaccatgattgctttgtcaggggatgtgatgcatctgtgctcttgaatttcacttcaagtacaggaaaccaaactgaaaaagttggtgctccaaatataacacttagaggtttctcattcattgataatgtgaagaaaattattgaagatgaatgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29813" stop="30979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30113" g_stop="30320" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30679" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="346" r_length="138" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E307853" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30113" e_stop="30320"/>
          <exon e_start="30542" e_stop="30679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCT</genome_strand>
        <mrna_strand>CAAAATGGCTTCATTTGTGTATTTGTGTCCTTTAATATTGGTGTGTATGTTAGGGTCTATGAGTGCTCAATTACAGCAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAAAGCTCCATCTCTTGCTGCTGACTTAATCACAATGCATTACCATGATTGCTTTGTCAGG.............................................................................................................................................................................................................................GGATGTGATGCATCTGTGCTCTTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTGCTCCAAATATAACACTTAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATTATTGAAGATGAATGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301322" ref_strand="+" ref_description="SGN-E301322 [cLEW-24-I13]">
      <seq>tgtgtatcttagtgtctagcaatgctcaattacaacaaaacttctatgccaagagttgtccaaaagcagagaagatcattttagagtatgtccataaacacattccaaatgcaccatctcttgctgctgccttaatcagaatgcatttccacgattgctttgttaggggatgcgacgcatctgtgctcttgaattttacttcaagttctggaagtcaaactgaaaaagttggtatcccaaatctaacacttagaggattctcatttattgatgatatcaagaaaataattgaagctgaatgtcctgggattgtgtcatgtgctgatattatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29854" stop="31010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30154" g_stop="30320" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30542" g_stop="30710" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="336" r_length="169" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E301322" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30154" e_stop="30320"/>
          <exon e_start="30542" e_stop="30710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGGGTACGTCATATTTATTAATTATTTCTATTATTATAATATACGTGTATTACCTTCATTTTCAGTTTGTTTCAAACTGAATGTCTTTCTATATTTTATATTAAACTCTTTTAACACCCAATATCTGATATAACATGTTTAAGGTCAGAAAATTCAAGTACATTTTTGCGATACATATAATTAGTTGATGTAATTCTTTTTTGTTTTTTTTGTGGTGATTGTAGGGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCT</genome_strand>
        <mrna_strand>TGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG.............................................................................................................................................................................................................................GGATGCGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTCTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34110" stop="32932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33811" g_stop="33216" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33811" e_stop="33216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTG-TTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCG-T-TGATTTACTCTCAAATGGCTGAATCCAAGAGGCTTACTAGAGATATTC-TCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCTGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTG-AAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34085" stop="32935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33785" g_stop="33235" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33785" e_stop="33235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTG-TTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCG-T-TGATTTACTCTCAAATGGCTGAATCCAAGAGGCTTACTAGAGATATTC-TCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCTGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTG-AAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44348" stop="42987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44048" g_stop="43287" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44048" e_stop="43287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCTCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTTCTTAGCACGAAGAAAGAAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAGGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTATTGCT-CCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATCACAAACTCACCCACCGGAGTAGAAACACAAATAGGTATGTCAAGCAATTCATAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCA-TTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43944" stop="43019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43644" g_stop="43315" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43644" e_stop="43315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAGGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTATTGCT-CCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATCACAAACTCACCCACCGGAGTAGAAACACAAATAGGTATGTCAAGCAATTCATAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44348" stop="43088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44048" g_stop="43388" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44048" e_stop="43388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCTCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTTCTTAGCACGAAGAAAGAAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAGGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTATTGCT-CCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATCACAAACTCACCCACCGGAGTAGAAACACAAATAGGTATGTCAAGCAATTCATAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCA-TTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44417" stop="43176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44117" g_stop="43459" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44117" e_stop="43459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCTCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTTCTTAGCACGAAGAAAGAAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAGGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTATTGCT-CCCACAAAAGT-TACAAGACAAGACCTATACACCCTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCA-TTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44866" stop="43587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44566" g_stop="43887" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44566" e_stop="43887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44937" stop="43625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44637" g_stop="43925" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44637" e_stop="43925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTTTTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44937" stop="43742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44637" g_stop="44042" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44637" e_stop="44042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTTTTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44937" stop="43812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44637" g_stop="44112" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44637" e_stop="44112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTTTTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44866" stop="43908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44566" g_stop="44208" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44566" e_stop="44208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="-" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="46417" stop="45640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46117" g_stop="45941" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46117" e_stop="45941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATAGCCACCAAATTCTATCACGCATGCACGAAGCATATCTTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69836" stop="70734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70136" g_stop="70460" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70136" e_stop="70460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGGTATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGAATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATACATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69836" stop="70734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70136" g_stop="70428" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70136" e_stop="70428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGGTATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGAATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATACATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69836" stop="70588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70136" g_stop="70288" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70136" e_stop="70288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGGTATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGAATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042L17-u3LT3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042L17.1" temp_strand="+" temp_description="C05HBa0042L17.1  AC225117.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042L17 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69837" stop="70886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70137" g_stop="70579" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042L17.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042L17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70137" e_stop="70579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGGTATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGAATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATACATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGACGAGCGAGATTTTTGGGAGAGAGACGTCTGAAAAACTTTAGCTAACGTTTGCTATGGAGAACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1542" PGL_stop="33"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1542" e_stop="1306"/>
            <exon e_start="768" e_stop="571"/>
            <exon e_start="476" e_stop="314"/>
            <exon e_start="212" e_stop="33"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1542" e_stop="1306" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1305" i_stop="769" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="768" e_stop="571" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="570" i_stop="477" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="476" e_stop="314" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="313" i_stop="213" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="212" e_stop="33" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1542" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="33"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1538" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1513" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1504" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="42"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1472" stop="1306"/>
              <exon start="768" stop="600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1449" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1423" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1391" stop="1306"/>
              <exon start="768" stop="571"/>
              <exon start="476" stop="314"/>
              <exon start="212" stop="68"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGTATTATCTCTTTTGAAGATAAAAAACAAAATGTCTACATTTGTGTATTTGTGTCCTCTAATATTTATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCAGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCACCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTCCACGATTGCTTTGTTAGG : GGATGTGACGCATCTGTGCTCTTGAATTTTACTTCAAGTTCTGGAAGTCAAACTGAAAAAGTTGGTATCCCAAATCTAACACTTAGAGGATTTTCATTTATTGATGATATCAAGAAAATAATTGAAGCTGAATGTCCTGGGATTGTGTCATGTGCTGATATTATCTCATTGGTTGCTAGAGACTCTATTGTGGTCATA : GGAGGTCCTTTTTGGAATGTACCAACCGGAAGAAGAGATGGAACAATCTCTATTGCTTCAGAAACTTTATCAGACATACCATCACCATTTAGTAACTTTTCTACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTCAAAGACTTGGTCCTATTATCTG : GTGCTCATACTATTGGAGTCTCTCTTTGCACGTCATTTTCAAACCGTCTATACAATTTTACTGGAACTTTTGGTACTCAAGATCCATCTCTAGACAGCGAATATGCAGCTAACTTGAAGGCTAATAAATGTAAATCAATCAACGATAACACAACAATAGTTGAGATGGATCCAGGGAGTT</gDNA_template>
            <first_frame> L  V  L  S  L  L  K  I  K  N  K  M  S  T  F  V  Y  L  C  P  L  I  F  M  C  I  L  V  S  S  N  A  Q  L  Q  Q  N  F  Y  A  K  S  C  P  K  A  E  K  I  I  L  E  Y  V  H  K  H  I  P  N  A  P  S  L  A  A  A  L  I  R  M  H  F  H  D  C  F  V  R  :  G  C  D  A  S  V  L  L  N  F  T  S  S  S  G  S  Q  T  E  K  V  G  I  P  N  L  T  L  R  G  F  S  F  I  D  D  I  K  K  I  I  E  A  E  C  P  G  I  V  S  C  A  D  I  I  S  L  V  A  R  D  S  I  V  V  I  :  G  G  P  F  W  N  V  P  T  G  R  R  D  G  T  I  S  I  A  S  E  T  L  S  D  I  P  S  P  F  S  N  F  S  T  L  Q  N  D  F  A  K  K  G  L  D  L  K  D  L  V  L  L  S   : G  A  H  T  I  G  V  S  L  C  T  S  F  S  N  R  L  Y  N  F  T  G  T  F  G  T  Q  D  P  S  L  D  S  E  Y  A  A  N  L  K  A  N  K  C  K  S  I  N  D  N  T  T  I  V  E  M  D  P  G  S  </first_frame>
            <second_frame>  *  Y  Y  L  F  *  R  *  K  T  K  C  L  H  L  C  I  C  V  L  *  Y  L  C  V  S  *  C  L  A  M  L  N  Y  N  K  T  S  M  P  R  V  V  Q  K  Q  R  R  S  F  *  S  M  S  I  N  T  F  Q  M  H  H  L  L  L  L  P  *  S  E  C  I  S  T  I  A  L  L  G :   D  V  T  H  L  C  S  *  I  L  L  Q  V  L  E  V  K  L  K  K  L  V  S  Q  I  *  H  L  E  D  F  H  L  L  M  I  S  R  K  *  L  K  L  N  V  L  G  L  C  H  V  L  I  L  S  H  W  L  L  E  T  L  L  W  S  * :   E  V  L  F  G  M  Y  Q  P  E  E  E  M  E  Q  S  L  L  L  Q  K  L  Y  Q  T  Y  H  H  H  L  V  T  F  L  L  S  K  M  I  L  L  R  R  V  L  T  S  K  T  W  S  Y  Y  L  :  V  L  I  L  L  E  S  L  F  A  R  H  F  Q  T  V  Y  T  I  L  L  E  L  L  V  L  K  I  H  L  *  T  A  N  M  Q  L  T  *  R  L  I  N  V  N  Q  S  T  I  T  Q  Q  *  L  R  W  I  Q  G  V </second_frame>
            <third_frame>   S  I  I  S  F  E  D  K  K  Q  N  V  Y  I  C  V  F  V  S  S  N  I  Y  V  Y  L  S  V  *  Q  C  S  I  T  T  K  L  L  C  Q  E  L  S  K  S  R  E  D  H  F  R  V  C  P  *  T  H  S  K  C  T  I  S  C  C  C  L  N  Q  N  A  F  P  R  L  L  C  *   : G  M  *  R  I  C  A  L  E  F  Y  F  K  F  W  K  S  N  *  K  S  W  Y  P  K  S  N  T  *  R  I  F  I  Y  *  *  Y  Q  E  N  N  *  S  *  M  S  W  D  C  V  M  C  *  Y  Y  L  I  G  C  *  R  L  Y  C  G  H   : R  R  S  F  L  E  C  T  N  R  K  K  R  W  N  N  L  Y  C  F  R  N  F  I  R  H  T  I  T  I  *  *  L  F  Y  S  P  K  *  F  C  *  E  G  S  *  P  Q  R  L  G  P  I  I  W :   C  S  Y  Y  W  S  L  S  L  H  V  I  F  K  P  S  I  Q  F  Y  W  N  F  W  Y  S  R  S  I  S  R  Q  R  I  C  S  *  L  E  G  *  *  M  *  I  N  Q  R  *  H  N  N  S  *  D  G  S  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1542" stop="1306"/>
                    <exon start="768" stop="571"/>
                    <exon start="476" stop="314"/>
                    <exon start="212" stop="34"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLKIKNKMSTFVYLCPLIFMCILVSSNAQLQQNFYAKSCPKAEKIILEYVHKHIPNAPSLAAALIRMHFHDCFVRGCDASVLLNFTSSSGSQTEKVGIPNLTLRGFSFIDDIKKIIEAECPGIVSCADIISLVARDSIVVIGGPFWNVPTGRRDGTISIASETLSDIPSPFSNFSTLQNDFAKKGLDLKDLVLLSGAHTIGVSLCTSFSNRLYNFTGTFGTQDPSLDSEYAANLKANKCKSINDNTTIVEMDPGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8758" PGL_stop="8171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8758" e_stop="8171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="8758" e_stop="8171" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8758" stop="8171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTATTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGAATGATTGCTTTTATTGAGGCCCGATCTTCTTTAGTCGAGCAGATTCGTGCACACCAGTTTGATGATGTAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGCGGTCCTTGATTCTGATGGTGTCTTACGGATCGGAGGCAGGATTTGTGTGCCTAAGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCTATTGTTCTCGGTATTCCATCCATCTAGGAGCGGTGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATTTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  V  G  R  L  I  A  W  G  V  L  H  L  L  V  L  R  K  D  H  W  L  E  M  F  N  Y  *  L  T  V  L  S  D  Y  R  S  Q  R  R  V  M  E  *  L  L  L  L  R  P  D  L  L  *  S  S  R  F  V  H  T  S  L  M  M  *  N  Y  V  S  F  E  T  K  Y  *  V  G  K  L  R  R  R  S  L  I  L  M  V  S  Y  G  S  E  A  G  F  V  C  L  R  Q  A  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  *  E  R  *  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  F  Q  T  L  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  F  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  G  Q  C  C  G  R  C  F  E  *  E  D  S  *  H  G  E  S  C  I  S  *  C  *  G  K  T  I  G  *  R  C  S  I  I  S  *  Q  S  C  P  I  T  D  L  R  G  E  *  W  N  D  C  F  Y  *  G  P  I  F  F  S  R  A  D  S  C  T  P  V  *  *  C  K  I  M  S  H  S  R  Q  S  I  E  W  G  S  *  G  G  G  P  *  F  *  W  C  L  T  D  R  R  Q  D  L  C  A  *  D  R  R  F  D  *  I  D  S  *  G  G  L  L  F  S  V  F  H  P  S  R  S  G  E  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  F  R  L  C  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  H  S  M  G  S  L  A  S  L  S  V  E  E  R  P  L  A  R  D  V  Q  L  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  V  K  L  C  L  I  R  D  K  V  L  S  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  Y  C  S  R  Y  S  I  H  L  G  A  V  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  S  D  F  V  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  F  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8756" stop="8172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTHSMGSLASLSVEERPLARDVQLLANSLVRLQISEESDGMIAFIEARSSLVEQIRAHQFDDVKLCLIRDKVLSGEAKEAVLDSDGVLRIGGRICVPKTGDLIRLILEEAYCSRYSIHLGAVKMYHDLSQHYWWCGMKRDISDFVSRCLTCQQVKCEHQRPGGVFQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10888" PGL_stop="11271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10888" e_stop="11271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="10888" e_stop="11271" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="11271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTTGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCTCCTACCTCCAGATGAGGCACCCTGAAACTGGCATGATATACGAGCTCTTTTAGGGTTCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTTGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGACAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACT</gDNA_template>
            <first_frame> V  N  R  T  S  P  D  L  G  H  K  N  P  L  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  V  I  S  Y  L  Q  M  R  H  P  E  T  G  M  I  Y  E  L  F  *  G  S  Q  T  P  L  S  P  S  I  L  P  L  L  R  R  S  Q  W  T  G  K  K  P  P  P  *  M  P  E  T  Q  L  T  *  *  T  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  A  *  T  T  G  K  N  A  P  H  T </first_frame>
            <second_frame>  *  T  V  R  A  L  T  W  A  I  R  T  P  *  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  A  *  Y  T  S  S  F  R  V  P  K  L  L  S  L  H  Q  F  C  L  F  C  G  A  H  N  G  L  E  R  S  P  L  P  R  C  P  K  H  S  *  P  D  R  Q  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I   </second_frame>
            <third_frame>   E  P  Y  E  P  *  P  G  P  *  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  L  L  P  P  D  E  A  P  *  N  W  H  D  I  R  A  L  L  G  F  P  N  S  S  L  S  I  N  S  A  S  F  A  A  L  T  M  D  W  K  E  A  P  S  L  D  A  R  N  T  A  D  L  I  D  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  R  A  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11037" stop="11270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWHDIRALLGFPNSSLSINSASFAALTMDWKEAPSLDARNTADLIDKVNPLTNLRILSVSFGIMANACLDNWQKRASY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="11717" PGL_stop="12019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11717" e_stop="12019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="11717" e_stop="12019" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11717" stop="12019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCTACACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGCGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGAGGTTCGGTAGAGACCTCTGTAGCACTGCCTCTCAATAGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACGACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTTAACAACTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  R  V  M  W  C  G  S  R  Y  T  T  L  R  K  A  L  *  H  T  *  H  P  Q  *  R  I  L  K  Q  R  C  D  Y  G  I  W  R  N  L  V  L  S  V  I  N  L  R  F  G  R  D  L  C  S  T  A  S  Q  *  C  C  S  T  S  T  T  S  G  Y  C  R  T  T  S  T  T  S  S  S  R  S  T  P  T  P  S  W  G  L  N  N  C </first_frame>
            <second_frame>  W  V  *  A  P  S  L  V  R  E  S  C  G  V  V  V  A  T  P  P  *  E  K  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  V  T  T  G  S  G  G  T  W  S  S  L  S  S  I  *  G  S  V  E  T  S  V  A  L  P  L  N  S  A  A  P  R  P  R  P  L  A  T  V  V  R  L  A  R  P  L  A  R  D  L  P  L  P  L  A  G  A  L  T  T   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  E  S  H  V  V  W  *  S  L  H  H  P  E  K  S  P  L  A  H  L  T  P  S  I  A  Y  P  E  A  K  V  *  L  R  D  L  E  E  P  G  P  L  C  H  Q  S  E  V  R  *  R  P  L  *  H  C  L  S  I  V  L  L  H  V  H  D  L  W  L  L  S  Y  D  *  H  D  L  *  L  E  I  Y  P  Y  P  *  L  G  P  *  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042L17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30082" PGL_stop="31256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30082" e_stop="30320"/>
            <exon e_start="30542" e_stop="30739"/>
            <exon e_start="30824" e_stop="30986"/>
            <exon e_start="31077" e_stop="31256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.955"/>
          <exon-intron don_prob="0.987" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="30082" e_stop="30320" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30321" i_stop="30541" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="30542" e_stop="30739" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30740" i_stop="30823" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30824" e_stop="30986" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.711">
            <gDNA_intron_boundary i_start="30987" i_stop="31076" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="31077" e_stop="31256" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30082" stop="30320"/>
              <exon start="30542" stop="30739"/>
              <exon start="30824" stop="30924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30084" stop="30320"/>
              <exon start="30542" stop="30739"/>
              <exon start="30824" stop="30986"/>
              <exon start="31077" stop="31256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30084" stop="30320"/>
              <exon start="30542" stop="30739"/>
              <exon start="30824" stop="30986"/>
              <exon start="31077" stop="31242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30085" stop="30320"/>
              <exon start="30542" stop="30739"/>
              <exon start="30824" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30113" stop="30320"/>
              <exon start="30542" stop="30739"/>
              <exon start="30824" stop="30945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30113" stop="30320"/>
              <exon start="30542" stop="30679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30154" stop="30320"/>
              <exon start="30542" stop="30710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGTTTCTATCTTTTTTGAGATAAGAAACAAAATGGCTAAATTTGTGTATTTGTGTCCTCTAATATTGATGTGTATCTTAGTGTCTAGCAATGCTCAATTACAACAAAACTTCTATGCCAAGAGTTGTCCAAAAGCTGAGAAGATCATTTTAGAGTATGTCCATAAACACATTCCAAATGCTCCATCTCTTGCTGCTGCCTTAATCAGAATGCATTTTCATGATTGCTTTGTCAGG : GGATGTGATGCATCTGTGTTATTGAATTTCACTTCAAGTACAGGAAACCAAACTGAAAAAGTTGGTATTCCAAATCTAACACTAAGAGGTTTCTCATTCATTGATAATGTGAAGAAAATAATTGAAGATAAATGCCCTGGAGTTGTCTCTTGTGCTGATATTGTTGCCTTAGTTGCTAGAGACTCTGTTGTCGTCACA : GGAGGTCCTTCATGGAGTGTACCAACAGGAAGAAGAGATGGAAGAATCTCTAATGCTTCAGAAACCTTAACAGACATTCCAGCTCCAACTAGTAACTTTTCAACTCTCCAAAATGATTTTGCTAAGAAGGGTCTTGACCTTAAAGACTTGGTCCTATTATCTG : GTGCTCACACTATTGGAATCTCTCATTGCTCATCATTGTCAACGCGTTTGTACAATTTTACTGGAACTTTTGGTACTGAAGATCCATCTCTAGACAGTGAATATGCAGCTAACCTTAAGGCAAATAAATGTAAATCAATTAACGATAACACAACAATAGTTGAAATGGACCCAGGGAGTT</gDNA_template>
            <first_frame> N  *  F  L  S  F  L  R  *  E  T  K  W  L  N  L  C  I  C  V  L  *  Y  *  C  V  S  *  C  L  A  M  L  N  Y  N  K  T  S  M  P  R  V  V  Q  K  L  R  R  S  F  *  S  M  S  I  N  T  F  Q  M  L  H  L  L  L  L  P  *  S  E  C  I  F  M  I  A  L  S  G :   D  V  M  H  L  C  Y  *  I  S  L  Q  V  Q  E  T  K  L  K  K  L  V  F  Q  I  *  H  *  E  V  S  H  S  L  I  M  *  R  K  *  L  K  I  N  A  L  E  L  S  L  V  L  I  L  L  P  *  L  L  E  T  L  L  S  S  Q :   E  V  L  H  G  V  Y  Q  Q  E  E  E  M  E  E  S  L  M  L  Q  K  P  *  Q  T  F  Q  L  Q  L  V  T  F  Q  L  S  K  M  I  L  L  R  R  V  L  T  L  K  T  W  S  Y  Y  L  :  V  L  T  L  L  E  S  L  I  A  H  H  C  Q  R  V  C  T  I  L  L  E  L  L  V  L  K  I  H  L  *  T  V  N  M  Q  L  T  L  R  Q  I  N  V  N  Q  L  T  I  T  Q  Q  *  L  K  W  T  Q  G  V </first_frame>
            <second_frame>  I  S  F  Y  L  F  *  D  K  K  Q  N  G  *  I  C  V  F  V  S  S  N  I  D  V  Y  L  S  V  *  Q  C  S  I  T  T  K  L  L  C  Q  E  L  S  K  S  *  E  D  H  F  R  V  C  P  *  T  H  S  K  C  S  I  S  C  C  C  L  N  Q  N  A  F  S  *  L  L  C  Q   : G  M  *  C  I  C  V  I  E  F  H  F  K  Y  R  K  P  N  *  K  S  W  Y  S  K  S  N  T  K  R  F  L  I  H  *  *  C  E  E  N  N  *  R  *  M  P  W  S  C  L  L  C  *  Y  C  C  L  S  C  *  R  L  C  C  R  H   : R  R  S  F  M  E  C  T  N  R  K  K  R  W  K  N  L  *  C  F  R  N  L  N  R  H  S  S  S  N  *  *  L  F  N  S  P  K  *  F  C  *  E  G  S  *  P  *  R  L  G  P  I  I  W :   C  S  H  Y  W  N  L  S  L  L  I  I  V  N  A  F  V  Q  F  Y  W  N  F  W  Y  *  R  S  I  S  R  Q  *  I  C  S  *  P  *  G  K  *  M  *  I  N  *  R  *  H  N  N  S  *  N  G  P  R  E   </second_frame>
            <third_frame>   L  V  S  I  F  F  E  I  R  N  K  M  A  K  F  V  Y  L  C  P  L  I  L  M  C  I  L  V  S  S  N  A  Q  L  Q  Q  N  F  Y  A  K  S  C  P  K  A  E  K  I  I  L  E  Y  V  H  K  H  I  P  N  A  P  S  L  A  A  A  L  I  R  M  H  F  H  D  C  F  V  R  :  G  C  D  A  S  V  L  L  N  F  T  S  S  T  G  N  Q  T  E  K  V  G  I  P  N  L  T  L  R  G  F  S  F  I  D  N  V  K  K  I  I  E  D  K  C  P  G  V  V  S  C  A  D  I  V  A  L  V  A  R  D  S  V  V  V  T  :  G  G  P  S  W  S  V  P  T  G  R  R  D  G  R  I  S  N  A  S  E  T  L  T  D  I  P  A  P  T  S  N  F  S  T  L  Q  N  D  F  A  K  K  G  L  D  L  K  D  L  V  L  L  S   : G  A  H  T  I  G  I  S  H  C  S  S  L  S  T  R  L  Y  N  F  T  G  T  F  G  T  E  D  P  S  L  D  S  E  Y  A  A  N  L  K  A  N  K  C  K  S  I  N  D  N  T  T  I  V  E  M  D  P  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30084" stop="30320"/>
                    <exon start="30542" stop="30739"/>
                    <exon start="30824" stop="30986"/>
                    <exon start="31077" stop="31255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSIFFEIRNKMAKFVYLCPLILMCILVSSNAQLQQNFYAKSCPKAEKIILEYVHKHIPNAPSLAAALIRMHFHDCFVRGCDASVLLNFTSSTGNQTEKVGIPNLTLRGFSFIDNVKKIIEDKCPGVVSCADIVALVARDSVVVTGGPSWSVPTGRRDGRISNASETLTDIPAPTSNFSTLQNDFAKKGLDLKDLVLLSGAHTIGISHCSSLSTRLYNFTGTFGTEDPSLDSEYAANLKANKCKSINDNTTIVEMDPGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33811" PGL_stop="33216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33811" e_stop="33216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="33811" e_stop="33216" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33811" stop="33216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33785" stop="33235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTGATTTACTCTCAAATGGCTGAATCCAAGAGGCTTACTAGAGATATTCTCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCTGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  F  F  S  L  M  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  N  P  K  L  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  N  V  V  C  I  F  Q  F  P  L  I  Y  S  Q  M  A  E  S  K  R  L  T  R  D  I  L  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  L  L  L  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  S  E  R  K  C  K  I  F  V  Y  S  *  G  S  *  K  K  T  T  K  I  A  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  K  L  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  L  W  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  G  C  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  M  L  F  V  F  F  N  F  R  *  F  T  L  K  W  L  N  P  R  G  L  L  E  I  F  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  C  C  *  N  E  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  Q  N  A  N  V  K  S  L  S  T  R  E  D  L  E  K  R  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   N  Y  S  L  S  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  F  L  S  Y  G  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  V  V  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  C  C  L  Y  F  S  I  S  V  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  S  A  A  K  M  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  K  D  D  E  D  R  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042L17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44637" PGL_stop="43287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44637" e_stop="43287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="44637" e_stop="43287" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44637" stop="43925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44637" stop="44042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44637" stop="44112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44566" stop="43887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44566" stop="44208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44117" stop="43459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44048" stop="43287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44048" stop="43388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43644" stop="43315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTTTTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACTATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGATCAAAACACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTCAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCTCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTTCTTAGCACGAAGAAAGAAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAGGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATCACAAACTCACCCACCGGAGTAGAAACACAAATAGGTATGTCAAGCAATTCATAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  F  F  *  H  I  S  G  S  Y  P  I  L  H  C  F  N  L  R  R  I  H  Y  H  S  F  L  R  N  H  V  P  Q  E  G  H  *  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  T  I  H  Q  A  H  E  R  S  R  G  I  R  K  I  K  T  H  H  H  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  Q  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  D  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  G  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  Y  C  S  H  K  S  Y  K  T  R  P  I  H  P  F  N  Y  H  K  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  I  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  F  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  E  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  I  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  S  K  H  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  L  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  S  T  K  K  E  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  I  A  P  T  K  V  T  R  Q  D  L  Y  T  L  S  T  I  T  N  S  P  T  G  V  E  T  Q  I  G  M  S  S  N  S  *  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  F  F  L  T  H  *  W  V  L  P  N  S  S  L  F  Q  S  *  K  D  P  L  S  L  L  P  *  K  P  R  A  P  R  R  T  L  N  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  S  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  Y  H  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  N  T  S  P  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  T  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  S  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  S  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  F  L  A  R  R  K  K  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  R  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  K  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43910" stop="43647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVLGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLSTKKEDDTHRIGSVVTLPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44373" stop="44134"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNTIHQAHERSRGIRKIKTHHHKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042L17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44441" stop="44244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNIILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRSKHITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46117" PGL_stop="45941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46117" e_stop="45941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="46117" e_stop="45941" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46117" stop="45941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGTTATCCCAATAGCCACCAAATTCTATCACGCATGCACGAAGCATATCTTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  C  S  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  S  H  Q  I  L  S  R  M  H  E  A  Y  L  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  V  I  P  I  A  T  K  F  Y  H  A  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042L17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70136" PGL_stop="70579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70136" e_stop="70579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="70136" e_stop="70579" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70136" stop="70460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70136" stop="70428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70136" stop="70288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70137" stop="70579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGGTATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGAATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATACATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGACGAGCGAGATTTTTGGGAGAGAGACGTCTGAAAAACTTTAGCTAACGTTTGCTATGGAGAACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  E  *  F  T  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  F  I  H  F  C  V  *  S  E  R  G  E  R  E  *  R  V  T  S  E  I  F  G  R  E  T  S  E  K  L  *  L  T  F  A  M  E  N  N  *  I  K  P  *  L  L  H  L  F  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  G  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  V  R  E  N  C  I  S  L  Q  L  N  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  T  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  R  E  *  R  A  R  F  L  G  E  R  R  L  K  N  F  S  *  R  L  L  W  R  T  I  K  S  N  P  S  Y  S  I  Y  F   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  V  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  *  I  I  H  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  H  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  Y  T  L  L  C  I  K  R  E  R  R  A  R  I  E  S  D  E  R  D  F  W  E  R  D  V  *  K  T  L  A  N  V  C  Y  G  E  Q  L  N  Q  T  L  A  T  P  F  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042L17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 294 chains have been computed
$ 
$ memory statistics:
$ 73216 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2153 bytes was the average size of a spliced alignment
$ 15192 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1688 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 318 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:24:06
-->
