<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:00:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="-" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16862" stop="15962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16562" g_stop="16262" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16562" e_stop="16262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTAATCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCAACATGACGCAACCACTGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCTAGAAGTCTCTATATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="-" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="17287" stop="16203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16987" g_stop="16503" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="-" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16987" e_stop="16503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATGCACACGCAACCACCACCTACACTCACAACCAACCCGAACCACCCCATACCCAAAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCTGAATCACCACCGCCCGTGCCACCCCCTAATACTCATCCCATGTTAACCCATGGCAAAG-CTGAATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCTCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGTTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTAATCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="-" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="26501" stop="25532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26246" g_stop="25832" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="425" r_length="416" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="-" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26246" e_stop="25832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTTTTTCAGCAGCCAAAAAGAGAGAGAGAGAGCAGTTTTCTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATATTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTACAGCTTCAGTTTTGCTATCGTAAACAGTAGCTGCGAAATTGATGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGACAATTTTTGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGG-TTTTTACTATTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>AGAGAGTTTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAAT-TCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="+" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75430" stop="76471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75730" g_stop="76179" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75730" e_stop="76179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATATTTTATTCGAATACGAAATTAAATTACAATACACACAAAAATAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAGATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-ATTTTTT--AAGAAAATTAGAAGTAATAAATATAAATTTAAAACTATTTTTTTAACTTCCATTAAATGAAGGGTATATGTGAGCCATTTCATAACGACATGGGTATATGTGAGCCGTTTGTACAACGGTAAGGGCATATATGAGACACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAACTTGAGGAGTATATCAGACCCTTTTCCCTAAAATTATT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT--ATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343842" ref_strand="+" ref_description="SGN-U343842        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-06, score=56.2)">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="+" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="109808" stop="110796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110108" g_stop="110496" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="+" ref_id="SGN-U343842" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110108" e_stop="110496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGACGGATCCCACGACGGACCGTCAAGGGCACGACAGACCGTCGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTATGAACTTCGTGACGAAGTGGCAGGACGGACCGTCACAGGCATGACAGGCCGTCACAAACTCTTTAATAAATTGAGTCTCTGAACCTTGTGACGGAAGCAGCAGGACAGACCGTCGCAGGCGCGACGGGCCGTCACAGTCTGCGTAACCCTGACTGGGTCGGATTTCTGTTAAATATTTTAAGGGGCGTTTAGGACTATTCCTGCATATAATTATAAAGTTAGTGGGTTAATGTTAATAATTCAATTACTT-GGGGATTAAAGGGGATAACCTTGAATTAATT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAACCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="-" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="114147" stop="113217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113847" g_stop="113517" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113847" e_stop="113517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAGCGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCAAGAATTACATCGAAGTCAACCATTTCTAAGATAATTAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCATAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAAGGTGAATTAAGACCAATAGAAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAAGCTATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="+" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="113247" stop="114506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113547" g_stop="114207" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="+" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113547" e_stop="114207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTTCTATTGGTCTTAATTCACCTTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTATGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTAATTATCTTAGAAATGGTTGACTTCGATGTAATTCTTGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGCTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTATCATCTCCTTCCTTCGCGCTAAGAGGATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAATTTCTGGATGGGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGACGGCTCCCGCTGAGTTAAGGGAATTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCTTTGGA</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0018K09-APCo1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0018K09.1" temp_strand="-" temp_description="C05HBa0018K09.1  AC232712.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0018K09 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="116397" stop="115257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116098" g_stop="115557" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0018K09.1" gen_strand="-" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0018K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116098" e_stop="115557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATGCAATGTTTTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGGACCCCATGCAATCGAACAACTTCCGAAATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCGACAATCACCCAGATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCCTCAGGCCTCTGGTGTTCATACTTTACTTGCTAACGATTCGGGCATTGAGCAACAAACCCAACAATGTCACGCTTCATCCTACTCCACCAAAAAAATTGTTTTAGGTCACGATACATCTTGGTTGCACCAGGATATATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTCCTCGTCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16987" PGL_stop="16262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16987" e_stop="16262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="16987" e_stop="16262" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16987" stop="16503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16562" stop="16262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATGCACACGCAACCACCACCTACACTCACAACCAACCCGAACCACCCCATACCCAAAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCTGAATCACCACCGCCCGTGCCACCCCCTAATACTCATCCCATGTTAACCCATGGCAAAGCTGAATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCTCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGTTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTAATCCGAGACATTCAGTCTTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCAACATGACGCAACCACTGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCTAGAAGTCTCTATATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAATGTT</gDNA_template>
            <first_frame> S  P  T  M  H  T  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  K  T  S  P  A  R  S  V  L  G  P  S  R  P  P  L  N  H  H  R  P  C  H  P  L  I  L  I  P  C  *  P  M  A  K  L  N  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  S  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  I  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  Q  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  L  E  V  S  I  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  C  T  R  N  H  H  L  H  S  Q  P  T  R  T  T  P  Y  P  K  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  *  I  T  T  A  R  A  T  P  *  Y  S  S  H  V  N  P  W  Q  S  *  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  F  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  V  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  *  S  E  T  F  S  L  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  N  M  T  Q  P  L  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  *  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  M   </second_frame>
            <third_frame>   T  H  N  A  H  A  T  T  T  Y  T  H  N  Q  P  E  P  P  H  T  Q  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  H  G  K  A  E  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  L  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  F  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  N  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  W  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  Y  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16985" stop="16680"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNAHATTTYTHNQPEPPHTQNISSPIRFGSFPATPESPPPVPPPNTHPMLTHGKAESLNPKPFRLPYYQIHLFPIVNQQPTLLPQKMLIGVMLWMTSLRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16679" stop="16377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPMGGTQWAVNGCTKLNTMQMAVFPGTRLVWLLKATIRSMGLINPRHSVLLFGRKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16815" stop="16519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKPKTFQATILPNTPLPDSEPTTYFVASKNAYWRHAMDDEFKVLTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26246" PGL_stop="25832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26246" e_stop="25832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="26246" e_stop="25832" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26246" stop="25832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTTTTTTTCAGCAGCCAAAAAGAGAGAGAGAGAGCAGTTTTCTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATATTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTACAGCTTCAGTTTTGCTATCGTAAACAGTAGCTGCGAAATTGATGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGACAATTTTTGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTACTATTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> R  V  F  F  S  S  Q  K  E  R  E  R  A  V  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  Y  L  I  R  N  *  Q  S  W  I  W  W  P  T  A  S  V  L  L  S  *  T  V  A  A  K  L  M  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  D  N  F  *  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  Y  Y  S  H  R  R  V  F  H  V  N  L  G  </first_frame>
            <second_frame>  E  F  F  S  A  A  K  K  R  E  R  E  Q  F  S  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  I  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  Y  R  K  Q  *  L  R  N  *  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  T  I  F  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  T  I  H  I  E  G  F  S  T  *  I  L  V </second_frame>
            <third_frame>   S  F  F  Q  Q  P  K  R  E  R  E  S  S  F  L  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  Y  S  F  S  F  A  I  V  N  S  S  C  E  I  D  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  L  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  L  L  F  T  S  K  G  F  P  R  K  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0018K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="75730" PGL_stop="76179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75730" e_stop="76179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="75730" e_stop="76179" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75730" stop="76179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATATTTTATTCGAATACGAAATTAAATTACAATACACACAAAAATAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAGATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTAAGAAAATTAGAAGTAATAAATATAAATTTAAAACTATTTTTTTAACTTCCATTAAATGAAGGGTATATGTGAGCCATTTCATAACGACATGGGTATATGTGAGCCGTTTGTACAACGGTAAGGGCATATATGAGACACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAACTTGAGGAGTATATCAGACCCTTTTCCCTAAAATTATT</gDNA_template>
            <first_frame> L  L  *  M  T  K  Y  F  I  R  I  R  N  *  I  T  I  H  T  K  I  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  K  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  R  K  L  E  V  I  N  I  N  L  K  L  F  F  *  L  P  L  N  E  G  Y  M  *  A  I  S  *  R  H  G  Y  M  *  A  V  C  T  T  V  R  A  Y  M  R  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  T  *  G  V  Y  Q  T  L  F  P  K  I  I </first_frame>
            <second_frame>  Y  C  R  *  P  N  I  L  F  E  Y  E  I  K  L  Q  Y  T  Q  K  *  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  R  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  E  N  *  K  *  *  I  *  I  *  N  Y  F  F  N  F  H  *  M  K  G  I  C  E  P  F  H  N  D  M  G  I  C  E  P  F  V  Q  R  *  G  H  I  *  D  T  F  I  T  R  G  I  S  A  P  N  D  K  L  E  E  Y  I  R  P  F  S  L  K  L   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  Y  S  N  T  K  L  N  Y  N  T  H  K  N  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  D  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  I  F  L  T  S  I  K  *  R  V  Y  V  S  H  F  I  T  T  W  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  T  L  L  *  R  G  V  Y  Q  L  Q  M  T  N  L  R  S  I  S  D  P  F  P  *  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0018K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="110108" PGL_stop="110496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110108" e_stop="110496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="110108" e_stop="110496" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110108" stop="110496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTCGACGGATCCCACGACGGACCGTCAAGGGCACGACAGACCGTCGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTATGAACTTCGTGACGAAGTGGCAGGACGGACCGTCACAGGCATGACAGGCCGTCACAAACTCTTTAATAAATTGAGTCTCTGAACCTTGTGACGGAAGCAGCAGGACAGACCGTCGCAGGCGCGACGGGCCGTCACAGTCTGCGTAACCCTGACTGGGTCGGATTTCTGTTAAATATTTTAAGGGGCGTTTAGGACTATTCCTGCATATAATTATAAAGTTAGTGGGTTAATGTTAATAATTCAATTACTTGGGGATTAAAGGGGATAACCTTGAATTAATT</gDNA_template>
            <first_frame> *  V  D  G  S  H  D  G  P  S  R  A  R  Q  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  K  S  T  L  *  T  S  *  R  S  G  R  T  D  R  H  R  H  D  R  P  S  Q  T  L  *  *  I  E  S  L  N  L  V  T  E  A  A  G  Q  T  V  A  G  A  T  G  R  H  S  L  R  N  P  D  W  V  G  F  L  L  N  I  L  R  G  V  *  D  Y  S  C  I  *  L  *  S  *  W  V  N  V  N  N  S  I  T  W  G  L  K  G  I  T  L  N  *   </first_frame>
            <second_frame>  E  S  T  D  P  T  T  D  R  Q  G  H  D  R  P  S  R  V  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  N  R  L  Y  E  L  R  D  E  V  A  G  R  T  V  T  G  M  T  G  R  H  K  L  F  N  K  L  S  L  *  T  L  *  R  K  Q  Q  D  R  P  S  Q  A  R  R  A  V  T  V  C  V  T  L  T  G  S  D  F  C  *  I  F  *  G  A  F  R  T  I  P  A  Y  N  Y  K  V  S  G  L  M  L  I  I  Q  L  L  G  D  *  R  G  *  P  *  I  N  </second_frame>
            <third_frame>   S  R  R  I  P  R  R  T  V  K  G  T  T  D  R  R  G  C  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  M  N  F  V  T  K  W  Q  D  G  P  S  Q  A  *  Q  A  V  T  N  S  L  I  N  *  V  S  E  P  C  D  G  S  S  R  T  D  R  R  R  R  D  G  P  S  Q  S  A  *  P  *  L  G  R  I  S  V  K  Y  F  K  G  R  L  G  L  F  L  H  I  I  I  K  L  V  G  *  C  *  *  F  N  Y  L  G  I  K  G  D  N  L  E  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0018K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="113847" PGL_stop="113517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113847" e_stop="113517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="113847" e_stop="113517" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113847" stop="113517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAGCGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCAAGAATTACATCGAAGTCAACCATTTCTAAGATAATTAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCATAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAAGGTGAATTAAGACCAATAGAAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAAGCTATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  A  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  Q  E  L  H  R  S  Q  P  F  L  R  *  L  S  L  H  E  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  *  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  K  V  N  *  D  Q  *  K  M  R  K  I  H  M  K  M  W  I  Q  D  Q  T  I  Q  K  L  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  C  K  I  W  R  K  P  S  H  T  K  N  Y  I  E  V  N  H  F  *  D  N  *  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  R  *  I  K  T  N  R  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  Q  Y  R  S  Y  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  S  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  I  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  I  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  E  L  R  P  I  E  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113716" stop="113519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTIIDSPTGVETRIGMSSNSQGELRPIENEEDTYENVDPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="113547" PGL_stop="114207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113547" e_stop="114207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="113547" e_stop="114207" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113547" stop="114207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTTCTATTGGTCTTAATTCACCTTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTATGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTAATTATCTTAGAAATGGTTGACTTCGATGTAATTCTTGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGCTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTATCATCTCCTTCCTTCGCGCTAAGAGGATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAATTTCTGGATGGGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGACGGCTCCCGCTGAGTTAAGGGAATTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCTTTGGA</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  S  I  G  L  N  S  P  C  E  L  L  D  I  P  I  R  V  S  T  P  V  G  E  S  M  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  I  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  A  R  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  G  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  T  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  L  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  F  L  L  V  L  I  H  L  V  N  C  L  T  Y  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  *  L  S  *  K  W  L  T  S  M  *  F  L  V  *  L  G  F  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  L  V  S  S  P  S  F  A  L  R  G  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  N  F  W  M  G  F  L  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  G  R  L  P  L  S  *  G  N  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  F  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  F  Y  W  S  *  F  T  L  *  I  A  *  H  T  Y  S  C  F  Y  S  G  G  *  V  Y  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  N  Y  L  R  N  G  *  L  R  C  N  S  W  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  A  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  R  *  E  D  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  I  S  G  W  V  S  C  R  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  G  I  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113547" stop="114206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFSIGLNSPCELLDIPIRVSTPVGESMIVEKVYRSCLVTFMGSNTHVDLIILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPARIISFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDGFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRTAPAELRELKAQLQELLSKGFIRPSASLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="116098" PGL_stop="115557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116098" e_stop="115557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="116098" e_stop="115557" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116098" stop="115557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCATGCAATGTTTTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGGACCCCATGCAATCGAACAACTTCCGAAATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCGACAATCACCCAGATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCCTCAGGCCTCTGGTGTTCATACTTTACTTGCTAACGATTCGGGCATTGAGCAACAAACCCAACAATGTCACGCTTCATCCTACTCCACCAAAAAAATTGTTTTAGGTCACGATACATCTTGGTTGCACCAGGATATATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCGTCGATTTTTGCTTCTTT</gDNA_template>
            <first_frame> F  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  S  G  L  W  C  S  Y  F  T  C  *  R  F  G  H  *  A  T  N  P  T  M  S  R  F  I  L  L  H  Q  K  N  C  F  R  S  R  Y  I  L  V  A  P  G  Y  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S   </first_frame>
            <second_frame>  S  H  A  M  F  S  K  I  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  G  P  H  A  I  E  Q  L  P  K  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  Y  R  Q  S  P  R  W  S  H  T  Y  P  L  S  W  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  P  Q  A  S  G  V  H  T  L  L  A  N  D  S  G  I  E  Q  Q  T  Q  Q  C  H  A  S  S  Y  S  T  K  K  I  V  L  G  H  D  T  S  W  L  H  Q  D  I  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  R  R  F  L  L  L  </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  F  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  D  P  M  Q  S  N  N  F  R  N  V  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  V  S  R  L  S  *  P  I  D  N  H  P  D  G  V  I  L  T  H  C  L  G  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  L  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  P  N  N  V  T  L  H  P  T  P  P  K  K  L  F  *  V  T  I  H  L  G  C  T  R  I  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  V  D  F  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115935" stop="115672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTYRQSPRWSHTYPLSWEDQPRSPLQFSPTSIQEWAFSEVSPQASGVHTLLANDSGIEQQTQQCHASSYSTKKIVLGHDTSWLHQDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0018K09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115931" stop="115707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIDNHPDGVILTHCLGKTNHEVHCNSLPLPFRNGHSLKCPLRPLVFILYLLTIRALSNKPNNVTLHPTPPKKLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 89 chains have been computed
$ 
$ memory statistics:
$ 16832 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2104 bytes was the average size of a spliced alignment
$ 12584 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1797 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:01:54
-->
