SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 1027 8.1 0.0 0.7 C03HBa0004C15.1 1 149 (158456) + Copia00198 Copia 631 778 (7578) 1 54699 12.3 3.5 1.6 C03HBa0004C15.1 180 8975 (149630) + Gypsy00073 Gypsy 2895 11850 (234) 2 1938 33.1 4.9 2.0 C03HBa0004C15.1 13210 14267 (144338) + Gypsy00187 Gypsy 2847 3935 (1929) 3 272 32.2 0.0 0.0 C03HBa0004C15.1 14280 14369 (144236) + Gypsy00042 Gypsy 4735 4824 (2674) 4 597 29.3 7.9 3.0 C03HBa0004C15.1 14436 14743 (143862) + Gypsy00038 Gypsy 4103 4460 (1152) 5 307 17.4 2.2 5.5 C03HBa0004C15.1 14854 14944 (143661) + Gypsy00181 Gypsy 5896 5983 (727) 6 2476 25.7 8.6 5.6 C03HBa0004C15.1 15301 16748 (141857) + Gypsy00203 Gypsy 5145 6636 (878) 7 4680 4.7 0.5 0.2 C03HBa0004C15.1 16749 17341 (141264) + Copia00003 Copia 4145 4739 (75) 8 * 33866 4.8 0.7 0.1 C03HBa0004C15.1 17320 21501 (137104) + Copia00003 Copia 1 4211 (603) 8 6456 15.2 1.1 1.1 C03HBa0004C15.1 21502 22668 (135937) C Gypsy00196 Gypsy (3418) 1284 118 9 * 8192 15.4 4.8 2.6 C03HBa0004C15.1 21665 23299 (135306) + Unknown00034 Unknown 2001 3670 (5407) 10 * 35886 9.3 2.1 0.5 C03HBa0004C15.1 22490 27519 (131086) + Gypsy00002 Gypsy 1 5112 (1889) 11 12433 8.0 0.0 0.1 C03HBa0004C15.1 27620 29240 (129365) + Gypsy00126 Gypsy 2101 3720 (9137) 12 8025 11.3 1.8 1.8 C03HBa0004C15.1 29238 30555 (128050) + Gypsy00014 Gypsy 5605 6921 (1) 13 * 6704 11.3 2.6 4.6 C03HBa0004C15.1 29507 30678 (127927) C Gypsy00073 Gypsy (996) 11088 9941 14 * 2195 9.2 1.0 2.6 C03HBa0004C15.1 30970 31360 (127245) C Gypsy00073 Gypsy (11699) 385 1 15 6308 18.4 5.4 4.8 C03HBa0004C15.1 31643 33317 (125288) + Gypsy00003 Gypsy 16 6697 (1696) 16 2171 25.3 3.4 4.0 C03HBa0004C15.1 33545 34348 (124257) + Gypsy00114 Gypsy 269 1067 (6875) 17 407 20.7 5.5 12.9 C03HBa0004C15.1 34178 34487 (124118) C Gypsy00112 Gypsy (1166) 6514 6228 18 * 304 25.9 20.8 1.7 C03HBa0004C15.1 34566 34738 (123867) + Gypsy00114 Gypsy 1270 1475 (6467) 17 * 1863 22.4 5.5 7.4 C03HBa0004C15.1 34678 35687 (122918) C Gypsy00112 Gypsy (1812) 5868 4822 19 641 10.8 0.0 1.1 C03HBa0004C15.1 35688 35781 (122824) C Gypsy00073 Gypsy (109) 11975 11883 20 1044 23.1 4.1 0.8 C03HBa0004C15.1 38159 38424 (120181) + Copia00151 Copia 5541 5815 (4946) 21 2396 18.2 7.4 4.0 C03HBa0004C15.1 39770 40387 (118218) + Copia00198 Copia 2861 3499 (4857) 22 825 26.4 3.0 2.6 C03HBa0004C15.1 40781 41084 (117521) + Copia00110 Copia 12489 12793 (1339) 23 473 27.8 3.3 0.7 C03HBa0004C15.1 41409 41560 (117045) C Copia00124 Copia (2963) 2307 2152 24 2156 17.6 9.9 1.6 C03HBa0004C15.1 41959 42444 (116161) + Copia00019 Copia 2865 3390 (1857) 25 3484 23.2 5.1 5.8 C03HBa0004C15.1 42711 42962 (115643) + Gypsy00155 Gypsy 4976 5685 (964) 26 3599 23.4 2.4 6.3 C03HBa0004C15.1 42963 44254 (114351) C Unknown00029 Unknown (132) 5577 4336 27 3484 23.2 5.1 5.8 C03HBa0004C15.1 44255 44591 (114014) + Gypsy00155 Gypsy 5686 6635 (14) 26 774 20.8 0.0 0.6 C03HBa0004C15.1 44622 44781 (113824) + Gypsy00077 Gypsy 493 651 (5462) 28 12141 19.0 1.7 4.2 C03HBa0004C15.1 44783 47594 (111011) + Unknown00025 Unknown 2312 5054 (1254) 29 371 8.6 2.8 0.0 C03HBa0004C15.1 47813 47924 (110681) + GYCUME1_LTR Unknown 355 3812 (2204) 30 225 14.3 4.7 2.3 C03HBa0004C15.1 48421 48463 (110142) C Gypsy00116 Gypsy (11487) 306 263 31 1490 22.3 3.1 1.6 C03HBa0004C15.1 51052 51433 (107172) C Unknown00052 Unknown (3655) 1014 627 32 2911 24.9 5.3 4.2 C03HBa0004C15.1 51451 53778 (104827) C Unknown00056 Unknown (2970) 2139 1 33 * 8851 20.8 3.3 2.7 C03HBa0004C15.1 52029 54421 (104184) + Unknown00016 Unknown 1 2407 (2574) 34 6151 11.9 4.5 1.3 C03HBa0004C15.1 56000 57072 (101533) + POTTEN1 Unknown 3 1109 (0) 35 761 24.2 6.8 1.6 C03HBa0004C15.1 58977 59287 (99318) + Gypsy00140 Gypsy 4480 4806 (2221) 36 308 13.8 0.0 4.4 C03HBa0004C15.1 59319 59386 (99219) + Gypsy00140 Gypsy 4805 4869 (2158) 37 699 10.3 1.7 1.7 C03HBa0004C15.1 59577 59694 (98911) + Gypsy00140 Gypsy 5314 5431 (1596) 37 2287 20.6 1.4 1.5 C03HBa0004C15.1 59873 60458 (98147) + Gypsy00180 Gypsy 8236 8820 (4595) 38 9618 15.5 2.3 0.3 C03HBa0004C15.1 60536 62252 (96353) + Gypsy00180 Gypsy 9358 11109 (2306) 38 3979 22.4 2.2 2.5 C03HBa0004C15.1 61291 62495 (96110) C Gypsy00152 Gypsy (728) 5050 3849 39 * 1337 20.5 2.4 1.3 C03HBa0004C15.1 63203 63583 (95022) C Gypsy00152 Gypsy (4252) 1526 1142 39 11985 0.8 0.0 0.0 C03HBa0004C15.1 63584 64913 (93692) C TN10MRNA_NA Unknown (0) 1332 3 40 927 18.2 0.9 3.7 C03HBa0004C15.1 64913 65129 (93476) C Gypsy00152 Gypsy (4628) 1150 940 39 * 8966 16.5 3.4 4.0 C03HBa0004C15.1 64958 67008 (91597) + Gypsy00180 Gypsy 4097 7796 (2158) 41 615 17.3 2.2 7.4 C03HBa0004C15.1 67096 67319 (91286) + Gypsy00140 Gypsy 5148 5431 (1596) 42 380 21.0 0.0 2.9 C03HBa0004C15.1 67315 67417 (91188) + Gypsy00140 Gypsy 4963 5062 (1965) 43 * 249 13.7 1.9 1.9 C03HBa0004C15.1 67425 67476 (91129) + Gypsy00180 Gypsy 8257 8308 (5107) 44 8744 16.5 1.8 1.8 C03HBa0004C15.1 67490 70028 (88577) + Gypsy00063 Gypsy 5846 11110 (2305) 45 1089 28.2 2.1 4.2 C03HBa0004C15.1 72866 73295 (85310) C Copia00013 Copia (1412) 2329 1909 46 476 20.8 4.0 4.5 C03HBa0004C15.1 73281 73456 (85149) C Copia00144 Copia (495) 5968 5794 47 * 241 24.7 1.6 2.4 C03HBa0004C15.1 79395 79489 (79116) + Gypsy00110 Gypsy 2487 5185 (2834) 48 2083 26.7 6.3 6.4 C03HBa0004C15.1 79731 81018 (77587) C Unknown00056 Unknown (2002) 3107 1821 49 1211 26.3 5.8 3.4 C03HBa0004C15.1 81091 81795 (76810) C Unknown00056 Unknown (3208) 1901 1180 50 5178 16.8 2.6 3.2 C03HBa0004C15.1 81807 83112 (75493) C Unknown00056 Unknown (2) 5489 1 51 362 22.6 9.3 7.7 C03HBa0004C15.1 83122 83495 (75110) C Unknown00012 Unknown (8) 5088 2023 52 1436 23.8 2.5 0.3 C03HBa0004C15.1 86540 86893 (71712) + Gypsy00060 Gypsy 3178 3539 (2202) 53 * 1551 25.2 7.3 1.9 C03HBa0004C15.1 86891 87371 (71234) C Gypsy00181 Gypsy (4241) 2469 1963 54 6939 20.8 5.1 5.5 C03HBa0004C15.1 87376 89570 (69035) C Gypsy00162 Gypsy (5643) 2189 4 55 5598 18.6 1.4 1.2 C03HBa0004C15.1 89570 90713 (67892) + Gypsy00063 Gypsy 6209 7354 (3572) 56 * 8669 17.0 1.4 1.4 C03HBa0004C15.1 89732 91418 (67187) + Unknown00037 Unknown 1152 2838 (2001) 57 258 33.0 0.0 0.0 C03HBa0004C15.1 91426 91534 (67071) C Gypsy00208 Gypsy (7283) 772 664 58 4852 25.4 5.4 5.1 C03HBa0004C15.1 91972 94013 (64592) C Gypsy00151 Gypsy (9401) 2248 202 59 * 24220 22.6 2.5 2.6 C03HBa0004C15.1 93919 94564 (64041) + Gypsy00188 Gypsy 501 1140 (6695) 60 1334 24.3 1.7 6.0 C03HBa0004C15.1 94565 95045 (63560) C Unknown00025 Unknown (3507) 2801 2342 61 24220 22.6 2.5 2.6 C03HBa0004C15.1 95046 101789 (56816) + Gypsy00188 Gypsy 1141 7822 (13) 60 2466 24.2 6.2 3.2 C03HBa0004C15.1 101783 102632 (55973) + Gypsy00188 Gypsy 1236 2111 (5724) 60 * 367 19.1 0.0 0.0 C03HBa0004C15.1 102638 102705 (55900) C Copia00089 Copia (7712) 3744 3677 62 255 22.9 9.8 8.3 C03HBa0004C15.1 102879 103011 (55594) C Gypsy00062 Gypsy (5894) 628 494 63 363 25.0 1.4 8.3 C03HBa0004C15.1 104012 104155 (54450) C Gypsy00201 Gypsy (1350) 5146 5013 64 427 26.5 9.6 2.5 C03HBa0004C15.1 104408 104647 (53958) + Copia00205 Copia 757 1013 (9243) 65 1941 28.4 3.4 3.1 C03HBa0004C15.1 105132 106102 (52503) + Copia00205 Copia 2455 3428 (6828) 65 245 27.8 2.0 1.0 C03HBa0004C15.1 106103 106200 (52405) + Gypsy00177 Gypsy 3371 3469 (6836) 66 * 293 29.9 0.0 0.0 C03HBa0004C15.1 106158 106264 (52341) C Gypsy00149 Gypsy (1332) 3651 3545 67 1540 25.7 5.0 3.6 C03HBa0004C15.1 106348 107412 (51193) + Gypsy00042 Gypsy 5170 6617 (881) 68 1515 22.6 6.0 3.4 C03HBa0004C15.1 106894 107429 (51176) C Gypsy00197 Gypsy (7643) 1298 749 69 * 4066 21.6 2.2 2.6 C03HBa0004C15.1 107753 108860 (49745) + Gypsy00086 Gypsy 3 1105 (6378) 70 833 25.8 3.3 6.6 C03HBa0004C15.1 108613 109127 (49478) C Gypsy00121 Gypsy (1064) 7262 6765 71 * 285 32.4 4.2 3.4 C03HBa0004C15.1 109216 109563 (49042) + Gypsy00159 Gypsy 3208 3796 (1963) 72 226 25.6 2.5 2.5 C03HBa0004C15.1 110509 110588 (48017) + Gypsy00050 Gypsy 3219 3298 (3736) 73 * 442 24.6 2.8 0.7 C03HBa0004C15.1 110584 110726 (47879) C Gypsy00092 Gypsy (3576) 2637 2492 74 19899 19.9 2.5 2.5 C03HBa0004C15.1 110755 111120 (47485) + Gypsy00029 Gypsy 1 1069 (6914) 75 12797 18.6 2.8 2.6 C03HBa0004C15.1 111121 114068 (44537) C Unknown00025 Unknown (1046) 5262 2310 76 19899 19.9 2.5 2.5 C03HBa0004C15.1 114069 116427 (42178) + Gypsy00029 Gypsy 1070 7974 (9) 75 4722 21.4 6.2 2.1 C03HBa0004C15.1 116444 117846 (40759) C Gypsy00086 Gypsy (6021) 1462 3 77 471 24.6 6.5 3.2 C03HBa0004C15.1 118140 118387 (40218) C Gypsy00042 Gypsy (859) 6639 6384 78 941 21.9 3.1 3.8 C03HBa0004C15.1 118405 118722 (39883) + Gypsy00197 Gypsy 947 1262 (7679) 79 * 1876 26.7 6.1 4.4 C03HBa0004C15.1 118441 119305 (39300) C Gypsy00177 Gypsy (4279) 6026 5147 80 * 20831 17.8 1.8 2.1 C03HBa0004C15.1 119295 123573 (35032) + Gypsy00046 Gypsy 5367 10480 (591) 81 7316 20.0 2.3 4.2 C03HBa0004C15.1 123572 125463 (33142) C Unknown00025 Unknown (2142) 4166 2312 82 * 1158 20.1 7.6 3.5 C03HBa0004C15.1 125470 125810 (32795) + Gypsy00031 Gypsy 4872 5226 (2043) 83 377 30.8 0.0 3.1 C03HBa0004C15.1 126015 126175 (32430) C Copia00089 Copia (7624) 3832 3677 84 823 31.4 4.7 5.3 C03HBa0004C15.1 127334 128043 (30562) + Copia00153 Copia 5520 6224 (1165) 85 297 37.7 0.6 0.3 C03HBa0004C15.1 128716 129032 (29573) + Gypsy00194 Gypsy 6714 7031 (2075) 86 450 18.5 8.3 7.8 C03HBa0004C15.1 132740 132956 (25649) C Unknown00025 Unknown (5840) 468 251 87 1994 22.5 3.5 1.1 C03HBa0004C15.1 133042 133499 (25106) + Gypsy00165 Gypsy 5786 6254 (844) 88 * 3209 18.1 1.6 0.9 C03HBa0004C15.1 133109 133748 (24857) + Copia00205 Copia 5060 5703 (4553) 89 1409 21.1 3.6 4.5 C03HBa0004C15.1 133645 134062 (24543) C Copia00191 Copia (1561) 3165 2752 90 * 1057 25.1 3.6 2.2 C03HBa0004C15.1 133776 134187 (24418) C Gypsy00161 Gypsy (6398) 668 251 91 * 303 13.0 6.5 3.3 C03HBa0004C15.1 134557 134721 (23884) + Gypsy00071 Gypsy 3654 4030 (8681) 92 38041 6.7 1.7 0.5 C03HBa0004C15.1 135444 141126 (17479) + Copia00006 Copia 8 5394 (410) 93 53163 11.9 1.1 2.3 C03HBa0004C15.1 141126 149508 (9097) + Gypsy00073 Gypsy 2892 11173 (911) 94 44805 10.8 0.2 5.4 C03HBa0004C15.1 143114 150425 (8180) C Gypsy00035 Gypsy (0) 6773 4 95 * 3317 12.5 8.4 0.0 C03HBa0004C15.1 150424 151008 (7597) + Copia00112 Copia 4506 5139 (3748) 96 * 3394 10.1 5.6 0.9 C03HBa0004C15.1 150707 151244 (7361) C Copia00094 Copia (4) 5605 5043 97 858 27.2 7.0 5.5 C03HBa0004C15.1 152763 153920 (4685) C Unknown00002 Unknown (1783) 8198 15 98 329 20.2 2.3 2.3 C03HBa0004C15.1 153921 154006 (4599) + Unknown00016 Unknown 253 338 (4643) 99 865 26.3 4.0 2.8 C03HBa0004C15.1 154181 154501 (4104) C Gypsy00177 Gypsy (16) 10289 9965 100 * 3471 21.8 5.4 4.6 C03HBa0004C15.1 154498 155989 (2616) C Unknown00002 Unknown (3234) 6747 5158 101 2503 17.8 6.3 7.8 C03HBa0004C15.1 155984 156834 (1771) C Unknown00002 Unknown (4760) 5221 4383 102 * 1326 22.1 1.3 0.8 C03HBa0004C15.1 157898 158250 (355) C Gypsy00014 Gypsy (603) 12254 4943 103 729 18.4 4.4 2.2 C03HBa0004C15.1 158251 158433 (172) + SINE_SO Unknown 1 187 (2) 104