<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:20:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG526-R" ref_strand="+" ref_description="TG526-R">
      <seq>ggagacaagcttgcatgcctgcagaagtgataagatggatggcgtatctcaaagaagtattaaccccgatcttggtcaataaaacttttgcatcctcagacatttctacatcctcctcttggcatctgatgtccaggattttgcgaatttcttcctctttgtaaggttgtgtagagatgatgagcaggcgatcaagaaagtcaattggaatcccgtgtggggatctgtagtttgttccccggattgtagtaatgcctctatttgtagcaacaaccaatataggtgccatgtcattctccagagctcggtttaggaaagagaaacactcaatgtcaagcatatgtacttcgtcaatgaagaggacaccgggcacaatctctgccttcccttcctccctccactcagcaaccttggtatctatttgttctctcacttcagcacgaatctcaccagtatcacccgtaaatagtgctaaaaatccctgtgttctgaaattgagatgagctgattaacatatttaatctagtgaagtaggaaacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="+" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18422" stop="19557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18726" g_stop="19257" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="543" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="+" ref_id="TG526-R" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="+"/>
        <rDNA rDNA_id="TG526-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18726" e_stop="19257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAGGAAACAAGG</genome_strand>
        <mrna_strand>G-CATGCCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAGGAAACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG605-R" ref_strand="+" ref_description="TG605-R">
      <seq>ggagacagcttgcatgcctgcagaagtgataagatggatggcgtatctcaaagaagtattaaccccgatcttggtcaataaaacttttgcatcctcagacatttctacatcctcctcttggcatctgatgtccaggattttgcgaatttcttcctctttgtaaggttgtgtagagatgatgagcaggcgatcaagaaagtcaattggaatcccgtgtggggatctgtagtttgttccccggattgtagtaatgcctctatttgtagcaacaaccaatataggtgccatgtcattctccagagctcggtttaggaaagagaaacactcaatgtcaagcatatgtacttcgtcaatgaagaggacaccgggcacaatctctgccttcccttcctccctccactcagcaaccttggtatctatttgttctctcacttcagcacgaatctcaccagtatcacccgtaaatagtgctaaaaatccctgtgttctgaaattgagatgagctgattaacatatttaatctagtgaagtaggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="+" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18422" stop="19553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18726" g_stop="19253" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="538" r_length="527" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="+" ref_id="TG605-R" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="+"/>
        <rDNA rDNA_id="TG605-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18726" e_stop="19253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAGGAAAC</genome_strand>
        <mrna_strand>G-CATGCCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG605-F" ref_strand="+" ref_description="TG605-F">
      <seq>ggagacagcttgcatgcctgcagaagtgataagatggatggcgtatctcaaagaagtattaaccccgatcttggtcaataaaacttttgcatcctcagacatttctacatcctcctcttggcatctgatgtccaggattttgcgaatttcttcctctttgtaaggttgtgtagagatgatgagcaggcgatcaagaaagtcaattggaatcccgtgtggggatctgtagtttgttccccggattgtagtaatgcctctatttgtagcaacaaccaatataggtgccatgtcattctccagagctcggtttaggaaagagaaacactcaatgtcaagcatatgtacttcgtcaatgaagaggacaccgggcacaatctctgccttcccttcctccctccactcagcaaccttggtatctatttgttctctcacttcagcacgaatctcaccagtatcacccgtaaatagtgctaaaaatccctgtgttctgaaattgagatgagctgattaacatatttaatctagtgaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="+" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18422" stop="19548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18726" g_stop="19248" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="533" r_length="522" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="+" ref_id="TG605-F" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="+"/>
        <rDNA rDNA_id="TG605-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18726" e_stop="19248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAG</genome_strand>
        <mrna_strand>G-CATGCCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG526-F" ref_strand="+" ref_description="TG526-F">
      <seq>aagcgcaaggagattgttcattgcgttacccttcacgaaatcgatgtcataaatagcaggtattaatttgctgctaatgttatgtgtttatggaaagaaatgatttttttgattccttgtagctcgattatcatattgttttgttgcagcttctgtttgttgttttgttattatctgttgatacttgttctccccttacttctttttctggactgctttggactgtttttccttgagctgacaggactacacttgttgtgttgttggaaaggaatgattttgatttatctatgattgcttacttaattgttcctttctgcattaccctaggtaattgttctttaataggaataagagtaagtgtcaacggctactctgtgctgttttgttattatcggttgattcttgtaattctgttgcttttatttctgaactgctttggagtgcttttccttgaggcgattgtctatggaaacaacctccttacctttgaggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="-" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20802" stop="19705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20502" g_stop="20005" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="-" ref_id="TG526-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="-"/>
        <rDNA rDNA_id="TG526-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20502" e_stop="20005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCAAGGAGATTGTTCATTGCGTTACCCTTCACGAAATCGATGTCATAAATAGCAGGTATTAATTTGCTGCTAATGTTATGTGTTTATGGAAAGAAATGATTTTTTTGATTCCTTGTAGCTCGATTATCATATTGTTTTGTTGCAGCTTCTGTTTGTTGTTTTGTTATTATCTGTTGATACTTGTTCTCCCCTTACTTCTTTTTCTGGACTGCTTTGGACTGTTTTTCCTTGAGCTGACAGGACTACACTTGTTGTGTTGTTGGAAAGGAATGATTTTGATTTATCTATGATTGCTTACTTAATTGTTCCTTTCTGCATTACCCTAGGTAATTGTTCTTTAATAGGAATAAGAGTAAGTGTCAACGGCTACTCTGTGCTGTTTTGTTATTATCGGTTGATTCTTGTAATTCTGTTGCTTTTATTTCTGAACTGCTTTGGAGTGCTTTTCCTTGAGGCGATTGTCTATGGAAACAACCTCCTTACCTTTGAGGTAG</genome_strand>
        <mrna_strand>AAGCGCAAGGAGATTGTTCATTGCGTTACCCTTCACGAAATCGATGTCATAAATAGCAGGTATTAATTTGCTGCTAATGTTATGTGTTTATGGAAAGAAATGATTTTTTTGATTCCTTGTAGCTCGATTATCATATTGTTTTGTTGCAGCTTCTGTTTGTTGTTTTGTTATTATCTGTTGATACTTGTTCTCCCCTTACTTCTTTTTCTGGACTGCTTTGGACTGTTTTTCCTTGAGCTGACAGGACTACACTTGTTGTGTTGTTGGAAAGGAATGATTTTGATTTATCTATGATTGCTTACTTAATTGTTCCTTTCTGCATTACCCTAGGTAATTGTTCTTTAATAGGAATAAGAGTAAGTGTCAACGGCTACTCTGTGCTGTTTTGTTATTATCGGTTGATTCTTGTAATTCTGTTGCTTTTATTTCTGAACTGCTTTGGAGTGCTTTTCCTTGAGGCGATTGTCTATGGAAACAACCTCCTTACCTTTGAGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR406" ref_strand="+" ref_description="SSR406">
      <seq>ccgcggccgctctagaagactctcgagactagttctctctttctctctctctctctctctctctctctctcggtgtctctctatctatctgtgtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="-" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="83271" stop="34267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40489" g_stop="40391" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="-" ref_id="SSR406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>99</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SSR406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40489" e_stop="40391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC</genome_strand>
        <mrna_strand>CCGCGGCCGCTCTAGAAGACTCTCGAGACTAGTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTGTCTCTCTATCTATCTGTGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR475" ref_strand="+" ref_description="SSR475">
      <seq>cgcggccgctctagaagtactctctctctctctctctctttctctctctctctctctctctctctctgtgtgtctctctatctctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="-" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="83270" stop="34269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40478" g_stop="40391" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="-" ref_id="SSR475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>88</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SSR475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40478" e_stop="40391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC</genome_strand>
        <mrna_strand>CGCGGCCGCTCTAGAAGTACTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTCTCTCTATCTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0660" ref_strand="+" ref_description="T0660">
      <seq>tgcaatttgctttcttcaattcaactgaattttcacctcccaaaaattgcagcaataagggaggagtatgagtatgggaggcggagatgctagtgttccggcgggagacagcggcgattcaaacaaggtgagtaacaccggcgccggcggaggtgttacaatcaacatccgatgttctagtggctcgaaattctctgtgcaggtcagcctcgattctaccgtcggatcgttcaagtctattcttgcacaacaagccaacattcctgctgagcaacagagattgatctataaaggtcggatcttaaaggatgagcaaacactagaaagctacggtctggaggcagatcacacggttcatttagttcgaggttctgccccagctccctctgcaaaccctgcatgtgcacccaatgttggaggtccaaatactgctcagaatgcaccaagaagtgctgcttctgatgcaggtggaccatttccaggatcaggccttggagcttcaatgtttcctggtcttggaagtggcggcggcggcggtttgtttggagctggtcttccagattatgagcaggtccagcagcagttgactcaaaaccctgacatgatgagagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0176B05-TIpyD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0176B05.1" temp_strand="-" temp_description="C03HBa0176B05.1  AC238459.1 htgs_phase:2 submitted_to_sgn_as:gi|260064227|gb|AC238459.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0176b05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101302" stop="94409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101002" g_stop="100671" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100670" i_stop="94993" i_length="5678">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94992" g_stop="94709" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="616" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0176B05.1" gen_strand="-" ref_id="T0660" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0176B05.1" gen_strand="-"/>
        <rDNA rDNA_id="T0660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101002" e_stop="100671"/>
          <exon e_start="94992" e_stop="94709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTTGCTTTCTTCAATTCAACTGAATTTTCACCTCCCAAAAATTGCAGCAATAAGGGAGGAGTATGAGTATGGGAGGCGGAGATGCTAGTGTTCCGGCGGGAGACAGCGGCGATTCAAACAAGGTGAGTAACACCGGCGCCGGCGGAGGTGTTACAATCAACATCCGATGTTCTAGTGGCTCGAAATTCTCTGTGCAGGTCAGCCTCGATTCTACCGTCGGATCGTTCAAGTCTATTCTTGCACAACAAGCCAACATTCCTGCTGAGCAACAGAGATTGATCTATAAAGGTCGGATCTTAAAGGATGAGCAAACACTAGAAAGCTACGGTATGTTAATTATAGGCTCTTTTAATTTTATTTTATGGCGGAGCTGATAAATTGCTGGTGCGTTATTAATATATTTTGGAGATTTTGTTTGAGTTTAATTGCACTGTTATAATTCAGAGTTGGAATTGTGATGACAAAATTAGCACAGCTCAATAAAAAACTAAAATGAAAGTGCAGAGGATAGAACTAATTAGAAGCAAACTCAATCTAAGAACATCACCATTAATTTGACCCACAAAGATACCTCGTACTTGTGTGTAAGAATATAGCTCAGCTATGATGATGAAGAACACTTGAATAGCGAAGAGGAAATGAATTGAGATAGATAGATAGAGAGACGGAATTTCCAAAATATTTCCCGACTCTGCACAGTAATTTCACTGTGTTTATATTAGGGGTGTGGTCTAATCCCTTGAGGATGGTTCCCATGTGACCTATTTAGCTTGATCTGCTCATCTGGATCATGATAATACTTCCAACTTGAAATTTGCCTTTTCCTAAAAGTCACGTATATTTTACATGTAATATATTCTCATTTATACGATCATGTATGGATCCATTAGTTCCCAACTGTAGAAACTAGGATATTGGAACCTAGAGGACAAGATGATGCAATAATCAACCCTTCTTCAATGTTCCCCTTTTGCATACCTGTTCATACCCAAGGACTTTTGGGACTTCATGGTTCAGCTTTAGAAGATCTAATTGATGCTTACTAAATCAATTGCGTTGTCTTTTTCCGCAGTTAAATTGTCCCTTATAAATCAATTCCATAGTCTGAATGTGCTATAGCTAAGTGTCCAATAGTTGGATGGCATGCATGTTAGCCGCATCATGTAACATTGCACCAGATGCATTTCGGATCGAGACAACTGGAGAATTAAGGTTGTGAAGCCACATAAAAAGTGATGAGCGAAGAAACCCACACGAAAGACATCATTGTCTATGCGCATAGGAAATATACTACTCTCATTAGTAAATTACCCGTTCTGCTAATTGTCCTAAAATAGTCCTGTTGTACCAATATTGCCAGCTTTCTTCGATGAATTTTTAGTGTGTAATTCATATACCATTTTTTTTTTGCAAGTTCTCACATGAAAAATCTATGACAACAGAAATAAACCCTTCACTTTGAGAGTCCGCTATAAGGAAAAACCTTCTAATCGAAGGATTCTGGCTAAAACTTGGTCCAAGTTTTGACTACCAACATAAACAACCATAGGTGTGATTCAAGGAAGCGGGCGCTCATTCTTTATACTATTGTGCAGCTCCAATATAGCTCTCATTTCCGCAATCTGGAGTTTGCATTTATGATACCTAAGACATACCCAAGGTTTCCTTTCATCTTCATCTGGAGGTCCCTTCAGAAAGCTTGAATGAGGAGCACCCTGGGGGGATGTGCTAACAGAGAATGTGAATTCTGTAATCAGCACAGAAAATCAGAAACTGCCTATTAGCTTCTTAGTTAGCAACTTATCATAAAAACCATTCACTTCTTCCCACATGCTGTGTAGCAACTAGCAAGGGATCACAAGTGTAAATGGTTGGGTGTACTTTCCTCTTCTGGAATATCATGAATTTCCTTGGAATCCGAAGTCCTTAGTCTTCCTGTCTGTCAGTCTCATCATCCTTATGCACAATTCTTCCTAAACCTCTAATGTCAAAACTCTTGACTTTGACTTTGCCGTTTGCTAAATAAGATGTCTGTGTCTGGACTCTGGAGTTGTTCCAGCATGCTTTTCAGTACTATCACCATAGTCTTTAGGAAGATCTACAACTTCTACTTTGATCTCAACCAAGTCTGTTCCACCTTGGTCACGAGAGATAAAACCATTACTACTTCCATTTCCTGCTGGAATAGTAGTGTTGTCAGACATATCTATATGGATTGAAGCAATATAGTTCTCTGCCACATGCATGTTTACATCAGTCCAAGCAGTTAATCCTTGTGAAAGTTCAGCACCAGTAGACACATTTTCATGAACGAGGCTATCATTGCACTATTTTCCAAAATTTGTAGTGTACTAGGATATGAATGGGTTGAGAATATAGCTGGGAGGTAGAAGTTTTAAAGACCACTTGGCTCCTTTTAAGGAAAGCCTCAAAAGCCTTTTCCTGCAACCTTGCCTGCTAAATTGTTTGGTCAAAGTGGTAGGCCTAAATACCATGATAGACATCTTAATTTCTTCTTTCAGTCCATCTGTGAAACTTGAAAGAAAGTAGGCGTTATTGACGTGTTGTACTGCAGATCAGTCATCTGCACCCCAAGGCCTTCAAACTTCTCAAAGGTACACTTCAGCAGATCCCTTTTGAGCCAGCCTAATCAACTTTTCTTCAAGGTATCTATTGTGTGTGGTGGATGATCCTCTTCCCTACTTTAAACTTCATTTCTAAGCCTGTCATTTTAGACTAAGTTTCACGGACTGGGTGCGGTTATCCAACATGGTTGCGAATCTGATGGTCGGATTCGGCGAAATTTTAATTTTAAGATTCAGGTACAAATATAGGTTCTGGGATTCAACTAAAAGAATTCCAAAATTATTAAGTAGAGTTGTAAAGATCTTCTAGGTCGTCTTCACCAAATCCTCAACTTCTTCTTTCATGCTCTCTGGTTCTTCCCTCAAAAAAGAAAAAGAAAGTCATTCAAGCAAGGCCTTCCACCAGCTCTCCTTACAGATCATTGCTAGTGTCTTCCAGAAGTTAGAATACAACCGCTTGAATTCTTAGTTTCTCTTCGTTTGGCCTGAAACATGAAGCAACAAATATTGACAAAGAGGAAAAGCTAAAAAGGACTATAATATTGAAGGTATGCCATTTCATTCTGAAAGGGTAGTTCAAGTGGAAAGCTACCTCCACCTTCAACCTTGAGGTTGAGGGGTTGGGTTCGGTCAGGAAGGGAGCAAGTGAAGAGGGCCAATATTGACTCCGAAGGAGAGGGGTTGAGGTTGGTAGATGTAGGTTATCGTATTTAAAATAACAACAAAGAGAACTACCAAATTCAAGGTAATTGAACTGAAAAAGAAATAAACAGTAATGAAATTTGAACTTTGAACAACCAGATAAAGCTTTCAAATCTGCAGAACGAAAGGAAAGAAGCGAGAAGAGGAGAAAGGAATTCAGAAGAACGGTGTGAAGGATCCGGAATTCTACTATGCCTCTCTCTCTGCTTTAGCTAGATTGTTATATTAACTACCCTTAGATCTCCACCATTCAAGTTTCTTAAGCCAGAGGTAATCCTGACCGTCCACGTCTCCCAATGTTTTATTTGAAATTTCCCGGCTTGCTTAGTTGGTCTTGGTATCGAACCCTTTTGAGCCCATTACATATGGATGTAAATTTCTTCTGATAGAGGATTGGTAGCATGCGGTTTCAATTTGGTTATCGAACGAAACCGGCAAATTGGAGGTGTGAAATGAATATTGAAGATTAAGGAGTGTTATCAAAGGTGCTCGCCTTAGTGCCTTTTGGAGAGAGATGAGGAGTCGGTGTGTCACCTTTCGTTGTGGGGCGAGAGATATGAAAAGGGCGAGCGGAGGTGCTGAGGCTTTTTCTGGAAAAGAAAGAGACTACAGCTTTTAATACTTAAAATTTTATTTTTAGAGTTCTTTTCCACTTACCTCTTTTGAGTCGATTACGCGACTGTGTTCAACTTAGTTCTCCATCTTTGTCTTCAGACTTCAGCTGTGTGCAAAGGTACGCTTCTTCTCTTTTCTTCCTTCTCCTTTCTGCCAACTGGGTACTGGCAGATTCTTTTCTTCTTTCTTCCTCTTTTACTTTCTCCTCTGTTTCCAGCTCTTTCGTTTTCTTTTTTCTTCTTGCATATCTTCTTCTTTCCCTTTTTTTTTCTAATTTCTGCTAATCCGGTTTTTTCCTTTTCATTTGCTAGTCCATTTATTTTTATTTTCTACCCAATTGAGTTTAGTTTAATACTGATTAATACATTAATTTTTTTTTGATGAATTAAATATTCCATTGAAGAAGATGCAAATTAGTTACAAATGTAGAAGCAAAAACAGTAAGATGTTTTTGCCTATAAATAGTAAGATGTTATTGCTGTTGAGATTTAATGTATAATTGATACATTAATTTTTTGCCTATAAACATTAAGATGTTATTTTTATTTAGATTTTGGTTATTTATATATGCAATTAAATATTTTAACTTTTTGGTATTAATTGGCGCCTCACTTCTAAAAGGTGAGCGCCTTGCCTCTTGCCTCGGTGAGGAACGCCGTTGTCGTCTTACGTCTTCCAAAACACCTAATGACCATCTCCCCAACTAGCTTCAAAATAAATGTGTAGTAGTAGTTGTTGGTTCTGTATTGAATTTTTGTGTTAGGGTATTGCATTTAATATTTCTTTACTATAATGATCGTCTTACGTCTTCTAAAGGACTCTACTAGTCTTTGGGATCTCCCAATCATTTAGGGGCCTTCTAGAACTCATATTCCGTCCCTGCTTTGACCAAACTTCTGCCACGGTGCCCCTTTGTTGGCTTCGATATATGTAGCAAGTATACAGTCTGCTAATATGCTTTTAGTATCTACTTCTAAGCAACACAAGTGTTTCTTGATAAAAAGAACATCGGCATTTGGTTTACTTGATAACATGTTAACAAGGCAGTGAAAGTGAGGTGCTGCCCGGGAGGAGTGGATTAGTGGTTTGTTCAATGTGCAAGAACGCCCACATGAGCTGTTTGGCAAATAATAGAGGGGTAGTCCTAGTTTCGAAAAATGATTGTTTGGAAGATTTAGGTTGATGTTGGGATTGTTCGCATGATAATGCCAAACATGCTAACCAGGGAGGTGGGGTAATATCTTCTTTGGCTTGGCTTGGTTGTTAGTGCCATCAATTTAGAAACTGACTAGTAGAACGTGTACACTGCTGTTAGCCTCAAGTGTCTGGGATATTGAGGGGATAACTAAGGAGTTCTGAAGTAATTGCTTTGACTTGTGGGAAGCTCTTGTTAAACTATAGTGTACTAGTAGACCATTTAAAACTAAAAAGCTTGTTAAATGGGATGTGACATGAATTGACAAGTATATGTAAACCTAAGAGACACGAGGTCTTTTTTGTTGTTTTACAGTGTTCACTCTATCATAGTGTTCGACTTTGTACTAGTTGTACTTGAAAAGTTGCATTAGTATTTAGTATATACTGGAAAGATGTTGTGCCATTGGATTTTTCCCTTCTCTAAAGAAGAACACTAAAAATGTGAAGTGAGCTGGGTAAAGTGGGGCTTGTATGACTTGTTGAATGTAATATGTGATTTCACTTTCCTTGGGACATTAAGCTGTATTGATGTCATATCTTCTTTTTTTCTTTTGAGTGTGAAAGGTGTAAAAGTTTGGGCTTATGCGACTCTTTGTTGGATGTATTGTGTGGTTCCACCCTCCTTGAGACACACAGTTTTGCATGGAAGGAATATCTTCTTTTACCTGTGATTAATTTCTACTTCTGCATCATTTGTTACACGAAGATACTCCAACGCCTATCAAGTTGTTCACAATCGGTTAATTATCACTTCAAAATGTTCAAGATTGAGTTTAGAAGTGGTACACCGTTAGCACTCAGTGCTGAACTTCAGTTATATCTGCTTTTGCATCGGCATGTAACAATTTATCAAGCTGTCGGTGATAATTGTGGTGATCTAGCTTATTTTAACTTTGTGCTTGATAGGTCTGGAGGCAGATCACACGGTTCATTTAGTTCGAGGTTCTGCCCCAGCTCCCTCTGCAAACCCTGCATGTGCACCCAATGTTGGAGGTCCAAATACTGCTCAGAATGCACCAAGAAGTGCTGCTTCTGATGCAGGTGGACCATTTCCAGGATCAGGCCTTGGAGCTTCAATGTTTCCTGGTCTTGGAAGTGGCGGCGGCGGCGGTTTGTTTGGAGCTGGTCTTCCAGATTTTGAGCAGGTCCAGCAGCAGTTGACTCAAAACCCTGACATGATGAGAGATATG</genome_strand>
        <mrna_strand>TGCAATTTGCTTTCTTCAATTCAACTGAATTTTCACCTCCCAAAAATTGCAGCAATAAGGGAGGAGTATGAGTATGGGAGGCGGAGATGCTAGTGTTCCGGCGGGAGACAGCGGCGATTCAAACAAGGTGAGTAACACCGGCGCCGGCGGAGGTGTTACAATCAACATCCGATGTTCTAGTGGCTCGAAATTCTCTGTGCAGGTCAGCCTCGATTCTACCGTCGGATCGTTCAAGTCTATTCTTGCACAACAAGCCAACATTCCTGCTGAGCAACAGAGATTGATCTATAAAGGTCGGATCTTAAAGGATGAGCAAACACTAGAAAGCTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGAGGCAGATCACACGGTTCATTTAGTTCGAGGTTCTGCCCCAGCTCCCTCTGCAAACCCTGCATGTGCACCCAATGTTGGAGGTCCAAATACTGCTCAGAATGCACCAAGAAGTGCTGCTTCTGATGCAGGTGGACCATTTCCAGGATCAGGCCTTGGAGCTTCAATGTTTCCTGGTCTTGGAAGTGGCGGCGGCGGCGGTTTGTTTGGAGCTGGTCTTCCAGATTATGAGCAGGTCCAGCAGCAGTTGACTCAAAACCCTGACATGATGAGAGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18726" PGL_stop="19257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18726" e_stop="19257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="18726" e_stop="19257" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18726" stop="19257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG526-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18726" stop="19253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG605-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18726" stop="19248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG605-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATGCTGCAGAAGTGATAAGATGGATGGCGTATCTCAAAGAAGTATTAACCCCGATCTTGGTCAATAAAACTTTTGCATCCTCAGACATTTCTACATCCTCCTCTTGGCATCTGATGTCCAGGATTTTGCGAATTTCTTCCTCTTTGTAAGGTTGTGTAGAGATGATGAGCAGGCGATCAAGAAAGTCAATTGGAATCCCGTGTGGGGATCTGTAGTTTGTTCCCCGGATTGTAGTAATGCCTCTATTTGTAGCAACAACCAATATAGGTGCCATGTCATTCTCCAGAGCTCGGTTTAGGAAAGAGAAACACTCAATGTCAAGCATATGTACTTCGTCAATGAAGAGGACACCGGGCACAATCTCTGCCTTCCCTTCCTCCCTCCACTCAGCAACCTTGGTATCTATTTGTTCTCTCACTTCAGCACGAATCTCACCAGTATCACCCGTAAATAGTGCTAAAAATCCCTGTGTTCTGAAATTGAGATGAGCTGATTAACATATTTAATCTAGTGAAGTAGGAAACAAGG</gDNA_template>
            <first_frame> A  N  A  A  E  V  I  R  W  M  A  Y  L  K  E  V  L  T  P  I  L  V  N  K  T  F  A  S  S  D  I  S  T  S  S  S  W  H  L  M  S  R  I  L  R  I  S  S  S  L  *  G  C  V  E  M  M  S  R  R  S  R  K  S  I  G  I  P  C  G  D  L  *  F  V  P  R  I  V  V  M  P  L  F  V  A  T  T  N  I  G  A  M  S  F  S  R  A  R  F  R  K  E  K  H  S  M  S  S  I  C  T  S  S  M  K  R  T  P  G  T  I  S  A  F  P  S  S  L  H  S  A  T  L  V  S  I  C  S  L  T  S  A  R  I  S  P  V  S  P  V  N  S  A  K  N  P  C  V  L  K  L  R  *  A  D  *  H  I  *  S  S  E  V  G  N  K  </first_frame>
            <second_frame>  P  M  L  Q  K  *  *  D  G  W  R  I  S  K  K  Y  *  P  R  S  W  S  I  K  L  L  H  P  Q  T  F  L  H  P  P  L  G  I  *  C  P  G  F  C  E  F  L  P  L  C  K  V  V  *  R  *  *  A  G  D  Q  E  S  Q  L  E  S  R  V  G  I  C  S  L  F  P  G  L  *  *  C  L  Y  L  *  Q  Q  P  I  *  V  P  C  H  S  P  E  L  G  L  G  K  R  N  T  Q  C  Q  A  Y  V  L  R  Q  *  R  G  H  R  A  Q  S  L  P  S  L  P  P  S  T  Q  Q  P  W  Y  L  F  V  L  S  L  Q  H  E  S  H  Q  Y  H  P  *  I  V  L  K  I  P  V  F  *  N  *  D  E  L  I  N  I  F  N  L  V  K  *  E  T  R </second_frame>
            <third_frame>   Q  C  C  R  S  D  K  M  D  G  V  S  Q  R  S  I  N  P  D  L  G  Q  *  N  F  C  I  L  R  H  F  Y  I  L  L  L  A  S  D  V  Q  D  F  A  N  F  F  L  F  V  R  L  C  R  D  D  E  Q  A  I  K  K  V  N  W  N  P  V  W  G  S  V  V  C  S  P  D  C  S  N  A  S  I  C  S  N  N  Q  Y  R  C  H  V  I  L  Q  S  S  V  *  E  R  E  T  L  N  V  K  H  M  Y  F  V  N  E  E  D  T  G  H  N  L  C  L  P  F  L  P  P  L  S  N  L  G  I  Y  L  F  S  H  F  S  T  N  L  T  S  I  T  R  K  *  C  *  K  S  L  C  S  E  I  E  M  S  *  L  T  Y  L  I  *  *  S  R  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0176B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18945" stop="19217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVPRIVVMPLFVATTNIGAMSFSRARFRKEKHSMSSICTSSMKRTPGTISAFPSSLHSATLVSICSLTSARISPVSPVNSAKNPCVLKLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0176B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18797" stop="19027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFCILRHFYILLLASDVQDFANFFLFVRLCRDDEQAIKKVNWNPVWGSVVCSPDCSNASICSNNQYRCHVILQSSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20502" PGL_stop="20005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20502" e_stop="20005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20502" e_stop="20005" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20502" stop="20005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG526-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGCAAGGAGATTGTTCATTGCGTTACCCTTCACGAAATCGATGTCATAAATAGCAGGTATTAATTTGCTGCTAATGTTATGTGTTTATGGAAAGAAATGATTTTTTTGATTCCTTGTAGCTCGATTATCATATTGTTTTGTTGCAGCTTCTGTTTGTTGTTTTGTTATTATCTGTTGATACTTGTTCTCCCCTTACTTCTTTTTCTGGACTGCTTTGGACTGTTTTTCCTTGAGCTGACAGGACTACACTTGTTGTGTTGTTGGAAAGGAATGATTTTGATTTATCTATGATTGCTTACTTAATTGTTCCTTTCTGCATTACCCTAGGTAATTGTTCTTTAATAGGAATAAGAGTAAGTGTCAACGGCTACTCTGTGCTGTTTTGTTATTATCGGTTGATTCTTGTAATTCTGTTGCTTTTATTTCTGAACTGCTTTGGAGTGCTTTTCCTTGAGGCGATTGTCTATGGAAACAACCTCCTTACCTTTGAGGTAG</gDNA_template>
            <first_frame> K  R  K  E  I  V  H  C  V  T  L  H  E  I  D  V  I  N  S  R  Y  *  F  A  A  N  V  M  C  L  W  K  E  M  I  F  L  I  P  C  S  S  I  I  I  L  F  C  C  S  F  C  L  L  F  C  Y  Y  L  L  I  L  V  L  P  L  L  L  F  L  D  C  F  G  L  F  F  L  E  L  T  G  L  H  L  L  C  C  W  K  G  M  I  L  I  Y  L  *  L  L  T  *  L  F  L  S  A  L  P  *  V  I  V  L  *  *  E  *  E  *  V  S  T  A  T  L  C  C  F  V  I  I  G  *  F  L  *  F  C  C  F  Y  F  *  T  A  L  E  C  F  S  L  R  R  L  S  M  E  T  T  S  L  P  L  R  * </first_frame>
            <second_frame>  S  A  R  R  L  F  I  A  L  P  F  T  K  S  M  S  *  I  A  G  I  N  L  L  L  M  L  C  V  Y  G  K  K  *  F  F  *  F  L  V  A  R  L  S  Y  C  F  V  A  A  S  V  C  C  F  V  I  I  C  *  Y  L  F  S  P  Y  F  F  F  W  T  A  L  D  C  F  S  L  S  *  Q  D  Y  T  C  C  V  V  G  K  E  *  F  *  F  I  Y  D  C  L  L  N  C  S  F  L  H  Y  P  R  *  L  F  F  N  R  N  K  S  K  C  Q  R  L  L  C  A  V  L  L  L  S  V  D  S  C  N  S  V  A  F  I  S  E  L  L  W  S  A  F  P  *  G  D  C  L  W  K  Q  P  P  Y  L  *  G   </second_frame>
            <third_frame>   A  Q  G  D  C  S  L  R  Y  P  S  R  N  R  C  H  K  *  Q  V  L  I  C  C  *  C  Y  V  F  M  E  R  N  D  F  F  D  S  L  *  L  D  Y  H  I  V  L  L  Q  L  L  F  V  V  L  L  L  S  V  D  T  C  S  P  L  T  S  F  S  G  L  L  W  T  V  F  P  *  A  D  R  T  T  L  V  V  L  L  E  R  N  D  F  D  L  S  M  I  A  Y  L  I  V  P  F  C  I  T  L  G  N  C  S  L  I  G  I  R  V  S  V  N  G  Y  S  V  L  F  C  Y  Y  R  L  I  L  V  I  L  L  L  L  F  L  N  C  F  G  V  L  F  L  E  A  I  V  Y  G  N  N  L  L  T  F  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0176B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20266" stop="20006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADRTTLVVLLERNDFDLSMIAYLIVPFCITLGNCSLIGIRVSVNGYSVLFCYYRLILVILLLLFLNCFGVLFLEAIVYGNNLLTFEV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0176B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20436" stop="20209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAANVMCLWKEMIFLIPCSSIIILFCCSFCLLFCYYLLILVLPLLLFLDCFGLFFLELTGLHLLCCWKGMILIYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40489" PGL_stop="40391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40489" e_stop="40391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40489" e_stop="40391" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40489" stop="40391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40478" stop="40391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0176B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="101002" PGL_stop="94709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101002" e_stop="100671"/>
            <exon e_start="94992" e_stop="94709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101002" e_stop="100671" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100670" i_stop="94993" i_length="5678"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="94992" e_stop="94709" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101002" stop="100671"/>
              <exon start="94992" stop="94709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATTTGCTTTCTTCAATTCAACTGAATTTTCACCTCCCAAAAATTGCAGCAATAAGGGAGGAGTATGAGTATGGGAGGCGGAGATGCTAGTGTTCCGGCGGGAGACAGCGGCGATTCAAACAAGGTGAGTAACACCGGCGCCGGCGGAGGTGTTACAATCAACATCCGATGTTCTAGTGGCTCGAAATTCTCTGTGCAGGTCAGCCTCGATTCTACCGTCGGATCGTTCAAGTCTATTCTTGCACAACAAGCCAACATTCCTGCTGAGCAACAGAGATTGATCTATAAAGGTCGGATCTTAAAGGATGAGCAAACACTAGAAAGCTACG : GTCTGGAGGCAGATCACACGGTTCATTTAGTTCGAGGTTCTGCCCCAGCTCCCTCTGCAAACCCTGCATGTGCACCCAATGTTGGAGGTCCAAATACTGCTCAGAATGCACCAAGAAGTGCTGCTTCTGATGCAGGTGGACCATTTCCAGGATCAGGCCTTGGAGCTTCAATGTTTCCTGGTCTTGGAAGTGGCGGCGGCGGCGGTTTGTTTGGAGCTGGTCTTCCAGATTTTGAGCAGGTCCAGCAGCAGTTGACTCAAAACCCTGACATGATGAGAGATATG</gDNA_template>
            <first_frame> C  N  L  L  S  S  I  Q  L  N  F  H  L  P  K  I  A  A  I  R  E  E  Y  E  Y  G  R  R  R  C  *  C  S  G  G  R  Q  R  R  F  K  Q  G  E  *  H  R  R  R  R  R  C  Y  N  Q  H  P  M  F  *  W  L  E  I  L  C  A  G  Q  P  R  F  Y  R  R  I  V  Q  V  Y  S  C  T  T  S  Q  H  S  C  *  A  T  E  I  D  L  *  R  S  D  L  K  G  *  A  N  T  R  K  L  R :   S  G  G  R  S  H  G  S  F  S  S  R  F  C  P  S  S  L  C  K  P  C  M  C  T  Q  C  W  R  S  K  Y  C  S  E  C  T  K  K  C  C  F  *  C  R  W  T  I  S  R  I  R  P  W  S  F  N  V  S  W  S  W  K  W  R  R  R  R  F  V  W  S  W  S  S  R  F  *  A  G  P  A  A  V  D  S  K  P  *  H  D  E  R  Y  </first_frame>
            <second_frame>  A  I  C  F  L  Q  F  N  *  I  F  T  S  Q  K  L  Q  Q  *  G  R  S  M  S  M  G  G  G  D  A  S  V  P  A  G  D  S  G  D  S  N  K  V  S  N  T  G  A  G  G  G  V  T  I  N  I  R  C  S  S  G  S  K  F  S  V  Q  V  S  L  D  S  T  V  G  S  F  K  S  I  L  A  Q  Q  A  N  I  P  A  E  Q  Q  R  L  I  Y  K  G  R  I  L  K  D  E  Q  T  L  E  S  Y   : G  L  E  A  D  H  T  V  H  L  V  R  G  S  A  P  A  P  S  A  N  P  A  C  A  P  N  V  G  G  P  N  T  A  Q  N  A  P  R  S  A  A  S  D  A  G  G  P  F  P  G  S  G  L  G  A  S  M  F  P  G  L  G  S  G  G  G  G  G  L  F  G  A  G  L  P  D  F  E  Q  V  Q  Q  Q  L  T  Q  N  P  D  M  M  R  D  M </second_frame>
            <third_frame>   Q  F  A  F  F  N  S  T  E  F  S  P  P  K  N  C  S  N  K  G  G  V  *  V  W  E  A  E  M  L  V  F  R  R  E  T  A  A  I  Q  T  R  *  V  T  P  A  P  A  E  V  L  Q  S  T  S  D  V  L  V  A  R  N  S  L  C  R  S  A  S  I  L  P  S  D  R  S  S  L  F  L  H  N  K  P  T  F  L  L  S  N  R  D  *  S  I  K  V  G  S  *  R  M  S  K  H  *  K  A  T  :  V  W  R  Q  I  T  R  F  I  *  F  E  V  L  P  Q  L  P  L  Q  T  L  H  V  H  P  M  L  E  V  Q  I  L  L  R  M  H  Q  E  V  L  L  L  M  Q  V  D  H  F  Q  D  Q  A  L  E  L  Q  C  F  L  V  L  E  V  A  A  A  A  V  C  L  E  L  V  F  Q  I  L  S  R  S  S  S  S  *  L  K  T  L  T  *  *  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0176B05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100944" stop="100671"/>
                    <exon start="94992" stop="94709"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRSMSMGGGDASVPAGDSGDSNKVSNTGAGGGVTINIRCSSGSKFSVQVSLDSTVGSFKSILAQQANIPAEQQRLIYKGRILKDEQTLESYGLEADHTVHLVRGSAPAPSANPACAPNVGGPNTAQNAPRSAASDAGGPFPGSGLGASMFPGLGSGGGGGLFGAGLPDFEQVQQQLTQNPDMMRDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 223 chains have been computed
$ 
$ memory statistics:
$ 206520 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 29502 bytes was the average size of a spliced alignment
$ 9088 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2272 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 223 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:21:36
-->
