<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:16:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392118" ref_strand="+" ref_description="SGN-E392118 [TUS-24-H8](-)">
      <seq>cgcaagttcacaaaggcattggctgtcactgttgttgtatctgttggatggatgtgctatgagctgtacttcaagtccgatgatgtgtacaatgagcgatggcgaaatgcctggattattcctgccttttggcaagtgctatctttctctctcctttgcatcatctgcgttctttgggcaccatctcaaaactccatgagatatgcctactctgatgatggtgaagagttcgataaggacgttacatttacgctcataaagccgtcccctctgctgccaaaggatgtaagaagccaacctgaagtgaggccaacattgggtaacagcgaactatttaatggtgaagttgtagaagacaagaccgagtaaagcaagacacacaacttttttacagtacgttaaagaaaggtacccgtcagactgagtaaattgtttttagaatcatgttatctatgttgtctgtataaaaaaagtacgaatcttaatcaggagaagtcttttaggtaaaacaaacttgtaatagttgttttttttagaaataaagttcattaatctaatgtgatctctctcgcaataattcaaaatagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124" stop="2242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="424" g_stop="486" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="487" i_stop="1111" i_length="625">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.252" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1112" g_stop="1248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="200" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1249" i_stop="1550" i_length="302">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1551" g_stop="1930" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="580" r_length="380" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="602"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E392118" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="424" e_stop="486"/>
          <exon e_start="1112" e_stop="1248"/>
          <exon e_start="1551" e_stop="1930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGTTCACAAATGCATTGGCTGTCACTGTTGTTGTATCTGTTGGATGGATGTGCTATGAGGTAATTTTCAATTCCTACATGATGTGGCTGGTTCTTCATTTTAGTAACTTCTGACAAGTATCTTTGTTGCCTGTTTGAAGAATCTGAGTTAATAAAGGGAAGTGGTTATAAGGACCTTATTGTCGACTGGTCTGCTTGATGTGACATGATTACTTTAGCAGAATGACTTAACACCAAAAAAATGAACATATATAATCCACCAAATTTGGCCTGCAATCCAATTTTCTGGAGAGAGGACTTAAATTTCCAATAATACAGGAAGCAGAAGCATAATTAGGCCTTTTTAATGTTTTGCAATCATTCTGTTATTCATTTTCATATGTTCAGGTCACTTAAATGTGTCAAAGCATCACAAATCAATTGGTCTCTTCCCTATTTCTTTTTACTAGTCAAGAAAGGAACTTCAACAAGTGATTCTTGGTTTGCCATTTGCGTCACAACTCAATTCAGGTTCGACTTGGGTTGTGGCACTCCATGTATTACCTTCAAGAGAAAAGGCACCTTCTAGAAATTGAGCATGATCATATCTTCCAACTACATCAGACATAGGGTTCATAATTTTCTCAACTGTTCCTGATAATGTATTGAAGCACAATGCGTTAACCATTTTCACCCCTTTTGGCAGCTGTACTTCAAGTCCACTGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTCTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAGGTACTACCCAGCTTCCACCTTATTGCGAGTGTACATTCATTTTACAGAGTTTTCACTATTCTAACCCTTCTAGTTCTTATAATTTCATCATATCTGCACTTTATATCTTGTGTTTAAATGCAAACTCTCAAAATTGTATTTCCTGAATCATTATGTTCAAACATCTCATAGCATCTTTCTATTTTCATCACTATAAGAAGTCAAAATCTTATAATAGCAAGTCTTATTTACAATAATAGCCAGTCTTTTCTCAGACGCGAATCTCAACTCTCACTGGTTTATTTTAAATGCTTACATAACAGATATGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTAATGTGATCTCTCTTGCAATAATTC</genome_strand>
        <mrna_strand>CGCAAGTTCACAAAGGCATTGGCTGTCACTGTTGTTGTATCTGTTGGATGGATGTGCTATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTTCAAGTCCGATGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTTTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAG..............................................................................................................................................................................................................................................................................................................ATATGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGTTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATTTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATCTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATAGTTGTTTTTTTTAGAAATAAAGTTCATTAATCTAATGTGATCTCTCTCGCAATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700004" ref_strand="+" ref_description="SGN-E700004 [FA11DD03]">
      <seq>aacagatacaacaacagtgacagccaatgcatttgttggatggatgtgctatgagctgtacttcaagtccactgatgtgtacaatgagcgatggcgaaatgcctggattattcctgccttctggcaagtgctatctttctctctcctttgcatcatctgcgttctttgggcaccatctcaaaactccatgagatatgccttatcgaactcttcaccatcatcagagtaggcatatctcatggagttttgcctactctgatgatggtgaagagttcgataaggacgctacattaacgctcattaagccgtcccctctgctgccaaaggatgtaagaagccaacctgaagtgaggccaacattgggtaacagcgaactatctaatggtgaagttgtagaagacaagaccgagtaaagcaagacacacaactttttttacagtacgttaaagaaaggtacccgtcagactgagtaaattgtttttagaatcatgttatctatgttgtctgtataaaaaaagtacgaatgttaatcaggagaagtcttttaggtaaaacaaatttgtaattgttgtttttttttagaagtaatgttcatttatctanaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctttgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="159" stop="2206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="432" g_stop="486" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.709"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="487" i_stop="1111" i_length="625">
            <donor d_prob="0.993" d_score="0.72"/>
            <acceptor a_prob="0.252" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1112" g_stop="1248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="192" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1249" i_stop="1491" i_length="243">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1492" g_stop="1906" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="602" r_length="410" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="633"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E700004" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="432" e_stop="486"/>
          <exon e_start="1112" e_stop="1248"/>
          <exon e_start="1492" e_stop="1906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCATTGGCTGTCACTGTTGTTGTATCTGTTGGATGGATGTGCTATGAGGTAATTTTCAATTCCTACATGATGTGGCTGGTTCTTCATTTTAGTAACTTCTGACAAGTATCTTTGTTGCCTGTTTGAAGAATCTGAGTTAATAAAGGGAAGTGGTTATAAGGACCTTATTGTCGACTGGTCTGCTTGATGTGACATGATTACTTTAGCAGAATGACTTAACACCAAAAAAATGAACATATATAATCCACCAAATTTGGCCTGCAATCCAATTTTCTGGAGAGAGGACTTAAATTTCCAATAATACAGGAAGCAGAAGCATAATTAGGCCTTTTTAATGTTTTGCAATCATTCTGTTATTCATTTTCATATGTTCAGGTCACTTAAATGTGTCAAAGCATCACAAATCAATTGGTCTCTTCCCTATTTCTTTTTACTAGTCAAGAAAGGAACTTCAACAAGTGATTCTTGGTTTGCCATTTGCGTCACAACTCAATTCAGGTTCGACTTGGGTTGTGGCACTCCATGTATTACCTTCAAGAGAAAAGGCACCTTCTAGAAATTGAGCATGATCATATCTTCCAACTACATCAGACATAGGGTTCATAATTTTCTCAACTGTTCCTGATAATGTATTGAAGCACAATGCGTTAACCATTTTCACCCCTTTTGGCAGCTGTACTTCAAGTCCACTGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTCTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAGGTACTACCCAGCTTCCACCTTATTGCGAGTGTACATTCATTTTACAGAGTTTTCACTATTCTAACCCTTCTAGTTCTTATAATTTCATCATATCTGCACTTTATATCTTGTGTTTAAATGCAAACTCTCAAAATTGTATTTCCTGAATCATTATGTTCAAACATCTCATAGCATCTTTCTATTTTCATCACTATAAGAAGTCAAAATCTTATAATAGCAAGTCTTATTTACAATAATAGCCAGTCTTTTCTCAGACGCGAATCTCAACTCTCACTGGTTTATTTTAAATGCTTACATAACAGATATGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAAC-TTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTG-TTTTTTTTAGAAGTAATGTTCATTAATCTA</genome_strand>
        <mrna_strand>AACAGATACAACAACAGTGACAGCCAATGCATTTGTTGGATGGATGTGCTATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTTCAAGTCCACTGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTCTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAG...................................................................................................................................................................................................................................................ATATGCCTTA-TCG-AACTCTTCACCATCATCAGAGTA-GGCATAT-C-T-CAT-GGAGTTTTGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGCTACATTAACGCTCATTAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAATTTGTAATTGTTGTTTTTTTTTAGAAGTAATGTTCATTTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222637" ref_strand="+" ref_description="SGN-E222637 [cLEL-16-L3](-)">
      <seq>tggtgaagagttcgataaggacgctacatttacgctcataaagccgtcccctctgctgccaaaggatgtaagaagccaacctgaagtgaggccaacattgggtaacagcgaactatctaatggtgaagttgtagaagacaagaccgagtaaagcaagacacacaacttttttacagtacgttaaagaaaggtacccgtcagactgagtaaattgtttttagaatcatgttatctatgttgtctgtataaaaaaagtacgaatgttaatcaggagaagtcttttaggtaaaacaaacttgtaattgttgttttttttagaagtaatgttcattaatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1269" stop="2207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1569" g_stop="1906" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="355"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E222637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1569" e_stop="1906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTA</genome_strand>
        <mrna_strand>TGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222392" ref_strand="+" ref_description="SGN-E222392 [cLEL-16-L3](-)">
      <seq>acgctacatttacgctcataaagccgtcccctctgctgccaaaggatgtaagaagccaacctgaagtgaggccaacattgggtaacagcgaactatctaatggtgaagttgtagaagacaagaccgagtaaagcaagacacacaacttttttacagtacgttaaagaaaggtacccgtcagactgagtaaattgtttttagaatcatgttatctatgttgtctgtataaaaaaagtacgaatgttaatcaggagaagtcttttaggtaaaacaaacttgtaattgatgttttttttagaagtaatgttcattagactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1289" stop="2207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1589" g_stop="1915" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E222392" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1589" e_stop="1915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTAATGTGATCT</genome_strand>
        <mrna_strand>ACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGATGTTTTTTTTAGAAGTAATGTTCATTAGACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403481" ref_strand="+" ref_description="SGN-E403481 [PPC-10-B20]">
      <seq>cctgggtgagggttttgcattgtttgagagatgagggactacatgtgagtggcagtttttcatcgggtgtgtccaagagtgcattgagagagcgtttcaagacgttcaacgccttgtttgaagaagtgcacaggactcagtccacatggttgataccagatacacagctcagggaggagctgcgcatttccatagccgaaaagttgattcctgcctatagatcatttcttggacggttcaggagccatatagaaagcggaaggcatccagaaaactatatcaagtatactgtggaggacctagagaatgctgtcttagatttctttgaggggtacgctgtgtcacagcacttgagaagaagatctcagtgaaagaatactagtttcaacagttagtactttaggacattctttgaatttttttcatggagttattcaggggctgaggttatggcattctggtgtttctcgagtttctgctttcatttgtagtattccagggtgatgggctgctgaaaacttcaggaagatcagctgtatctatcaagaagggtcagtgcctcctgcctctggatgctctgccctgtaagcatgttgttgttgtatttcttccatacttttagactttatttcaatttgtccatatctgaactgttgtattgattactttcttgaaattttatcataatcatgattttgttaacttgagtccagaatttagtttagcttggatgacttctacgctgctgcgatattgtcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4706" stop="3342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4406" g_stop="3642" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E403481" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4406" e_stop="3642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGTGAAGGTTTTGCATTGTTTGAGAGATGAGGGACTACATGTGAGTGGCAGTTTTTCATCGGGGGTGTCAAAGAGTGCATTGAGAGAGCGTTTCAAGACGTTCAACGCGTTGTTTGAAGAGGTGCACAGGACTCAGTCCACATGGTTGATACCAGATACACAGCTCAGGGAGGAGCTGCGCATTTCCATAGCCGAAAAGTTGATTCCTGCCTATAGATCATTTCTTGGACGATTCAGGAGCCATATAGAAAGCGGAAGGCATCCAGAAAACTATATCAAGTATACTGTGGAGGACCTAGAGAATGCTGTCTTAGATTTCTTTGAGGGGTACGCTGTGTCACAGCACCTAAGAAGAAGATCTCAGTGAAAGAATATTAGTTTCAACAGTTAGTTCTTTAGGCCATTCTTTGAATTTTTTTCATGGAGTTATTCAGGGGCTGAGGTTACGGCATTCTGGTGTTTCTCGAGTTTCTACTTCCATTTCTAGTATTCCAGGGTGATTGGCTGCTGAAAACTTCAGGAAGATCAACTGTTATCAATCAAGAAGGGTCAGTGCCTCCTGCCTCTGGATGCTCTGCCCTGTAAGCATGTTGTTGTTGTATTTCTTCCATACTTCTAGACTTCATTTCAATTTGTCCATATCTGAACTGTTGTGTTGATTACTTTCTTGAAATTTTATCATTATCATGATTTTGTTAACTTGAGTCCAGAATTTAGTTTAGCTTGGATGACTTCTACACTGCAACGATATTGTTCTTTGG</genome_strand>
        <mrna_strand>CCTGGGTGAGGGTTTTGCATTGTTTGAGAGATGAGGGACTACATGTGAGTGGCAGTTTTTCATCGGGTGTGTCCAAGAGTGCATTGAGAGAGCGTTTCAAGACGTTCAACGCCTTGTTTGAAGAAGTGCACAGGACTCAGTCCACATGGTTGATACCAGATACACAGCTCAGGGAGGAGCTGCGCATTTCCATAGCCGAAAAGTTGATTCCTGCCTATAGATCATTTCTTGGACGGTTCAGGAGCCATATAGAAAGCGGAAGGCATCCAGAAAACTATATCAAGTATACTGTGGAGGACCTAGAGAATGCTGTCTTAGATTTCTTTGAGGGGTACGCTGTGTCACAGCACTTGAGAAGAAGATCTCAGTGAAAGAATACTAGTTTCAACAGTTAGTACTTTAGGACATTCTTTGAATTTTTTTCATGGAGTTATTCAGGGGCTGAGGTTATGGCATTCTGGTGTTTCTCGAGTTTCTGCTTTCATTTGTAGTATTCCAGGGTGATGGGCTGCTGAAAACTTCAGGAAGATCAGCTG-TATCTATCAAGAAGGGTCAGTGCCTCCTGCCTCTGGATGCTCTGCCCTGTAAGCATGTTGTTGTTGTATTTCTTCCATACTTTTAGACTTTATTTCAATTTGTCCATATCTGAACTGTTGTATTGATTACTTTCTTGAAATTTTATCATAATCATGATTTTGTTAACTTGAGTCCAGAATTTAGTTTAGCTTGGATGACTTCTACGCTGCTGCGATATTGTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366500" ref_strand="-" ref_description="SGN-E366500 [cLPT-13-B13]">
      <seq>gatcatttcttggacgattcaggagccatatagaaagcggaaggcatccagaaaactatatcaagtatactgtggaggacctagagaatgctgtcttagatttctttgaggggtacgctgtgtcacagcacctaagaagaagatctcagtgaaagaatattagtttcaacagttagttctttaggccattctttgaatttttttcatggagttattcaggggctcaggttatggcattctggtgtttctcgagtttctacttccatttgtagtattccagggtgattggctgctgaaaacttcaggaagatcaactgttatcaatcaagaagggtcagtgcctcctgcctctggatgctctgccctgtaagcatgttgttgttgtatttcttccatacttctagacttcatttcactttgtccatatctgaactgttgtgttgattactttattgaaattttatcattatcatgattttgttaaaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4487" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4187" g_stop="3704" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="503"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E366500" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366500" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4187" e_stop="3704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTTCTTGGACGATTCAGGAGCCATATAGAAAGCGGAAGGCATCCAGAAAACTATATCAAGTATACTGTGGAGGACCTAGAGAATGCTGTCTTAGATTTCTTTGAGGGGTACGCTGTGTCACAGCACCTAAGAAGAAGATCTCAGTGAAAGAATATTAGTTTCAACAGTTAGTTCTTTAGGCCATTCTTTGAATTTTTTTCATGGAGTTATTCAGGGGCTGAGGTTACGGCATTCTGGTGTTTCTCGAGTTTCTACTTCCATTTCTAGTATTCCAGGGTGATTGGCTGCTGAAAACTTCAGGAAGATCAACTGTTATCAATCAAGAAGGGTCAGTGCCTCCTGCCTCTGGATGCTCTGCCCTGTAAGCATGTTGTTGTTGTATTTCTTCCATACTTCTAGACTTCATTTCAATTTGTCCATATCTGAACTGTTGTGTTGATTACTTTCTTGAAATTTTATCATTATCATGATTTTGTTAA</genome_strand>
        <mrna_strand>GATCATTTCTTGGACGATTCAGGAGCCATATAGAAAGCGGAAGGCATCCAGAAAACTATATCAAGTATACTGTGGAGGACCTAGAGAATGCTGTCTTAGATTTCTTTGAGGGGTACGCTGTGTCACAGCACCTAAGAAGAAGATCTCAGTGAAAGAATATTAGTTTCAACAGTTAGTTCTTTAGGCCATTCTTTGAATTTTTTTCATGGAGTTATTCAGGGGCTCAGGTTATGGCATTCTGGTGTTTCTCGAGTTTCTACTTCCATTTGTAGTATTCCAGGGTGATTGGCTGCTGAAAACTTCAGGAAGATCAACTGTTATCAATCAAGAAGGGTCAGTGCCTCCTGCCTCTGGATGCTCTGCCCTGTAAGCATGTTGTTGTTGTATTTCTTCCATACTTCTAGACTTCATTTCACTTTGTCCATATCTGAACTGTTGTGTTGATTACTTTATTGAAATTTTATCATTATCATGATTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314897" ref_strand="+" ref_description="SGN-E314897 [cTOA-31-M23]">
      <seq>taatttcctttatctaccccatcttatcatctctattctctaccataacattcacatgttccttccacttgcttcctttttcttcttcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggtcagccggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaacaaaagaagaacacaaatccgtagatcttgttacaacagagtcttctagagagaaggaggccgctgtaaatgagcccagcacaagcaaagaggcaccaaaggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaagctagagcagtgatgttattggctagtaaaggatgtcctcagaagtcatttgggactttccaggctataaacatcgacaaaattaacacatgttctcctgcccctgcttctttgaaagtaatagaactgattctgttgcacacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27185" stop="29042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27485" g_stop="27824" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="488" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28742" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="725" r_length="237" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E314897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27485" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTTTATCTACCCCATCTTATCATCTCTATTCTCTACCATAACATTCACATGTTCCTTCCACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCA</genome_strand>
        <mrna_strand>TAATTTCCTTTATCTACCCCATCTTATCATCTCTATTCTCTACCATAACATTCACATGTTCCTTCCACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG.......................................................................................................................................................................................................................................................CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGAC-AAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAAGTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGA-AAGTAATAGAACTGATTCTGTTGCA-CACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240334" ref_strand="+" ref_description="SGN-E240334 [cLED-25-A20]">
      <seq>cacttgcttcctttttcttcttcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggtcagccggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaacaaaagaagaacacaaatccgtagatcttgttacaacagagtcttctagagagaaggaggccgctgtaaatgagcccagcacaagcaaagaggcaccataggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaaagctagagcagtgatgttattggctagtaaaggatgtcctcagagttcatttgggactttccaggctataaacatcgacaaaattaacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27250" stop="28984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27550" g_stop="27824" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="423" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28684" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="605" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E240334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27550" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACAT</genome_strand>
        <mrna_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG.......................................................................................................................................................................................................................................................CAAAGAGGCACCATAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368751" ref_strand="+" ref_description="SGN-E368751 [TUS-22-L20]">
      <seq>cacttgcttcctttttcttcttcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagatttattaaagggaaagctactatttgagatttgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27250" stop="28095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27550" g_stop="27795" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E368751" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27550" e_stop="27795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAG-TTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCT</genome_strand>
        <mrna_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGATTTATTAAAGGGAAAGCTACTATTTGAGATTTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240716" ref_strand="+" ref_description="SGN-E240716 [cLED-24-A15]">
      <seq>cacttgcttcctttttcttcttcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27250" stop="28075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27550" g_stop="27775" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E240716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27550" e_stop="27775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCT</genome_strand>
        <mrna_strand>CACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702973" ref_strand="+" ref_description="SGN-E702973 [FA20AH01]">
      <seq>acttgcttcctttttcttcttcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggtcagccggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaacaaaagaagaacacaaatccgtagatcttgttacaacagagtcttctagagagaaggaggccgctgtaaatgagcccagcacaagcaaagaggcaccaaaggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaaagctagagcagtgatgttattggctagtaaaggatgtcctcagagttcatttgggactttccaggctataaacatcgacaaaattaacacatgttctcctgcccctgcttctttgacaagtaatagaactgattctgttgcaccacagcaacaacacctccagattaagccagactcttgctctgctgcaccgcaacagcacaagcacaattcgcccccactccatgtttgtagtagtactaaaactgatcagcttaagctcggatcagtttcatctgcacccctagtagagcaggagcaacacaagcaaatccagtcacaggctgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27251" stop="29221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27551" g_stop="27824" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="422" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28921" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="841" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E702973" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27551" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCG</genome_strand>
        <mrna_strand>ACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG.......................................................................................................................................................................................................................................................CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCCTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203532" ref_strand="+" ref_description="SGN-E203532 [cLEC-15-K4]">
      <seq>tcactactacataacttctctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttttctcatcggcagatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagagatcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggtcagccggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaacaaaagaagaacacaaatccgtagatcttgttacaacagagtcttctagagagaaggaggccgctgtaaatgagcccagcacaagcaaagaggcaccaaaggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaaagctagagcagtgatgttattggctagtaaaggatgtcctcagagttcatttgggactttccaggctataaacatcgacaaaattaacacatgttctcctgcccctgcttctttgacaagtaatagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27271" stop="29023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27571" g_stop="27824" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="402" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28723" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="623" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E203532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27571" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTG</genome_strand>
        <mrna_strand>TCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG.......................................................................................................................................................................................................................................................CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365944" ref_strand="+" ref_description="SGN-E365944 [cLPT-11-J22]">
      <seq>tctagctaccctaaaattgtcacaatccttaatttctgtttctatcaattttggattttttctcatcggcaaatatgtcgaatttatgtgacgctcgccggaggaatggaaacggcaaggcgccggagaggtcaagtttcgtacagacttgtaacttgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggtcagccggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaacaaaagaagaacacaaatgcgtagatcttgttacaacagagtcttctatagagaaggaggccgctgtaaatgagcccagcacatgcaaagaggcaccaaaggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaaagctagagcagtgatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27289" stop="28911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27589" g_stop="27824" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="382" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28611" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="491" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E365944" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27589" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTA</genome_strand>
        <mrna_strand>TCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGA--TTTTTTCTCATCGGCAAATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGGTCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATGCGTAGATCTTGTTACAACAGAGTCTTCTATAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACATG.......................................................................................................................................................................................................................................................CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402041" ref_strand="+" ref_description="SGN-E402041 [PPC-6-K5]">
      <seq>tgttgagtcagtttattaaagggaaagctactattagagatctgaatctcggaatcgccggccaaacggaagctgcagggaaaactgaaactgcaactatggatttattaacagtcatggaaaaaccatctattgatctaactaaagaagaacacaaatccgtagatcttgttacaacagagtcttctagagagaaggaggccgctgtaaatgagcccagcacgagtaaagaggcaccaaaggagcctaaagcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttcccagctgacaaagctagagcagtgatgttattggctagtaaaggatgtcatcagagttcatttgggactttccagactacaaacatcgacaaaattaacacatgtactactgcccctgcttctttgacaagtaacagaactgattctgttgcaccacagcaacaacacctccagattaagccagactctagctctgctgcaccgcaacagcacaagcacaatctgccgccactccatgtttgtagtagtacaaaaactgatcagcttaagcgcggatcagtttcatctgcacccttagtagagcaggagcaacacaagcaaatccagtcacaggctgcccggattagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27447" stop="29234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27747" g_stop="27824" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28108" g_stop="28255" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="226" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28503" g_stop="28934" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="658" r_length="432" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E402041" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27747" e_stop="27824"/>
          <exon e_start="28108" e_stop="28255"/>
          <exon e_start="28503" e_stop="28934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAGGTATTTTTTATTTTCAATTAATAGTATTTCTAAGAGATCTAGTTAATTAATGGAATTCCGTACATAGAGTTTTATTTTTTGTTGATATTGTAAACTGAATTTGGAAATATGTGAATTGAATATTATATTTTGGGGAGTTGTGATTCGAGGAAGATTTGTTGGCTGTAACTATCTTAATCTGGTAATTTTTAATTGGAGAAAATAGAATAAAACAAGTTTTAGAAGAAGAAGCTGCTGCTAAGTTTTCTATAGTTTCTCAACTGTGCTGTGCTTTCTCTTCCAGGGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAG</genome_strand>
        <mrna_strand>TGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGCCAAACGGAAGCTGCAG...........................................................................................................................................................................................................................................................................................GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACTAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACGAG.......................................................................................................................................................................................................................................................TAAAGAGGCACCAAAGGAGCCTAAAGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCAGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCATCAGAGTTCATTTGGGACTTTCCAGACTACAAACATCGACAAAATTAACACATGTACTACTGCCCCTGCTTCTTTGACAAGTAACAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTAGCTCTGCTGCACCGCAACAGCACAAGCACAATCTGCCGCCACTCCATGTTTGTAGTAGTACAAAAACTGATCAGCTTAAGCGCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCCGGATTAGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211837" ref_strand="+" ref_description="SGN-E211837 [cLEC-66-D20]">
      <seq>gaaggaggccgctgtaaatgagcccagcacaagcaaagaggcaccaaaggagcctaaggcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttccctgctgacaaagctagagcagtgatgttattggctagtaaaggatgtcctcagagttcatttgggactttccaggctataaacatcgacaaaattaacacatgttctcctgcccctgcttctttgacaagtaatagaactgattctgttgcaccacagcaacaacacctccagattaagccagactcttgctctgctgcaccgcaacagcacaagcacaattcgcccccactccatgtttgtagtagtactaaaactgatcagcttaagctcggatcagtttcatctgcacccttagtagagcaggagcaacacaagcaaatccagtcacaggctgccgaaattagcagcagctccgagctacctatcgcaagaagatcttcacttcataggtttctcgagaagaggaaagatagggcaactgttagagctccataccaagttgtacgtaacaatccgttgttaccatcttcttcgaatactaatggtgaatcatcttctaaggatagcgaagatcagctcgatctcaatttcaagttatagccagaactccactctcgcagntggaattccatagcttttttttggttgaccacactgcatgagctagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27923" stop="29904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28223" g_stop="28255" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28503" g_stop="28939" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="470" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29245" g_stop="29302" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="528" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29406" g_stop="29604" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="725" r_length="197" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E211837" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28223" e_stop="28255"/>
          <exon e_start="28503" e_stop="28939"/>
          <exon e_start="29245" e_stop="29302"/>
          <exon e_start="29406" e_stop="29604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGGCCGCTGTAAATGAGCCCAGCACAAGGTTCGTCCCTCTGTGTATTTTAACCTGTTTTAGCTAGTAATTCAAGTTATAATTACACTTGCTATGAACGATTAATATGAAAAAGAATTATGATTGTCGGTAGAAGTTGAAAGTTGAAACTCTTACCCCTTTTACTTTTTAGTCTATTATGAAGTTCGCATCTCCCTAGCTCAGTTTATTGGTTACATGAACGTTCACCTAAGTTACTAATTTCACATGCTGATTTATGTTTGATTTCCTTTTTCAGCAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCGGTGAGCAAATTACATCCTTCTTTTTCATTTTATATAGCAGTATTTGACTACACACAAAATATATGAAAGGTAGACAGACGTTTGGGGTCTACTTTAATACTCTTCAAACAAGTGGTCTTAAACTGTCATGATGTATAAACAACTACGTTATGTTAAAAGAGTTTCCAATATAAAACATATTTTTTCTTAAACGGACTAAAAAGAATAGGATATAAAATGAAATAAAGCGAGTACTACTTACTCATGTTGCATGATAAAATTTTCACAGATCGGTTCTAATATGCATTATATCTTTGGTTTCTCAGAGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAGGTAAGCGGAATTTAAATTTGTGTTTATACCAAAACTTTTTCCAAACAACTTTTGAGGTTTGTTTAGTGTAAAAGAATCTCACTTCTTTTTCTGTCTTATTCAGGGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAG</genome_strand>
        <mrna_strand>GAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG.......................................................................................................................................................................................................................................................CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCG.................................................................................................................................................................................................................................................................................................................AGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAG.......................................................................................................GGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGNTGGAATTCCAT-AGCTTTTTTTTGGTTGACCA-CACTGCATGAGCTAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402427" ref_strand="+" ref_description="SGN-E402427 [PPC-7-P9]">
      <seq>gcagcccaattgactatgttctatgatggtaaagtgattgtttttgatgatttcccagctgacaaagctagagcagtgatgttattggctagtaaaggatgtcatcagagttcatttgggactttccagactacaaacatcgacaaaattaacacatgtactactgcccctgcttctttgacaagtaacagaactgattctgttgcaccacagcaacaacacctccagattaagccagactctagctctgctgcaccgcaacagcacaagcacaatctgccgccactccatgtttgtagtagtacaaaaactgatcagcttaagcgcggatcagtttcatctgcacccttagtagagcaggagcaacacaagcaaatccagtcacaggctgccggaattagcagcagctccgagctacctattgcaagaagatcttcactacataggtttcttgagaagaggaaagatagggcaattgttagagctccataccaagttgtacataacaatccgttgttaccatcgtcttcaaatactaatggtgaatcatcttccaaggatagcgaagatcagcttgatctcaatttcaagttatagccaaaactccactctcgcagttggaattccataagcttttttttggttgacgactggataagctagtagtattaaatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28228" stop="29886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28528" g_stop="28939" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29245" g_stop="29302" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="470" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29406" g_stop="29618" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="681" r_length="211" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E402427" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28528" e_stop="28939"/>
          <exon e_start="29245" e_stop="29302"/>
          <exon e_start="29406" e_stop="29618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCGGTGAGCAAATTACATCCTTCTTTTTCATTTTATATAGCAGTATTTGACTACACACAAAATATATGAAAGGTAGACAGACGTTTGGGGTCTACTTTAATACTCTTCAAACAAGTGGTCTTAAACTGTCATGATGTATAAACAACTACGTTATGTTAAAAGAGTTTCCAATATAAAACATATTTTTTCTTAAACGGACTAAAAAGAATAGGATATAAAATGAAATAAAGCGAGTACTACTTACTCATGTTGCATGATAAAATTTTCACAGATCGGTTCTAATATGCATTATATCTTTGGTTTCTCAGAGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAGGTAAGCGGAATTTAAATTTGTGTTTATACCAAAACTTTTTCCAAACAACTTTTGAGGTTTGTTTAGTGTAAAAGAATCTCACTTCTTTTTCTGTCTTATTCAGGGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATT-AATATATATT</genome_strand>
        <mrna_strand>GCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCAGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCATCAGAGTTCATTTGGGACTTTCCAGACTACAAACATCGACAAAATTAACACATGTACTACTGCCCCTGCTTCTTTGACAAGTAACAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTAGCTCTGCTGCACCGCAACAGCACAAGCACAATCTGCCGCCACTCCATGTTTGTAGTAGTACAAAAACTGATCAGCTTAAGCGCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGGAATTAGCAGCAGCTCCG.................................................................................................................................................................................................................................................................................................................AGCTACCTATTGCAAGAAGATCTTCACTACATAGGTTTCTTGAGAAGAGGAAAGATAG.......................................................................................................GGCAATTGTTAGAGCTCCATACCAAGTTGTACATAACAATCCGTTGTTACCATCGTCTTCAAATACTAATGGTGAATCATCTTCCAAGGATAGCGAAGATCAGCTTGATCTCAATTTCAAGTTATAGCCAAAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTG---ACGACTGGATAAGCTAGTAGTATTAAATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287447" ref_strand="+" ref_description="SGN-E287447 [cLES-9-A15]">
      <seq>gattctgttgcaccacagcaacaacacctccagattaagccagactcttgctctgctgcaccgcaacagcacaagcacaattcgcccccactccatgtttgtagtagtactaaaactgatcagcttaagctcggatcagtttcatctgcacccttagtagagcaggagcaacacaagcaaatccagtcacaggctgccgaaattagcagcagctccgagctacctatcgcaagaagatcttcacttcataggtttctcgagaagaggaaagatagggcaactgttagagctccataccaagttgtacgtaacaatccgttgttaccatcttcttcgaatactaatggtgaatcatcttctaaggatagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28423" stop="29801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28723" g_stop="28939" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29245" g_stop="29302" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="275" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29406" g_stop="29501" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E287447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28723" e_stop="28939"/>
          <exon e_start="29245" e_stop="29302"/>
          <exon e_start="29406" e_stop="29501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCGGTGAGCAAATTACATCCTTCTTTTTCATTTTATATAGCAGTATTTGACTACACACAAAATATATGAAAGGTAGACAGACGTTTGGGGTCTACTTTAATACTCTTCAAACAAGTGGTCTTAAACTGTCATGATGTATAAACAACTACGTTATGTTAAAAGAGTTTCCAATATAAAACATATTTTTTCTTAAACGGACTAAAAAGAATAGGATATAAAATGAAATAAAGCGAGTACTACTTACTCATGTTGCATGATAAAATTTTCACAGATCGGTTCTAATATGCATTATATCTTTGGTTTCTCAGAGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAGGTAAGCGGAATTTAAATTTGTGTTTATACCAAAACTTTTTCCAAACAACTTTTGAGGTTTGTTTAGTGTAAAAGAATCTCACTTCTTTTTCTGTCTTATTCAGGGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGA</genome_strand>
        <mrna_strand>GATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCG.................................................................................................................................................................................................................................................................................................................AGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAG.......................................................................................................GGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291671" ref_strand="-" ref_description="SGN-E291671 [cLET-6-I21]">
      <seq>actccatgtttgtagtagtactanaactgatcagcttaagctcggatcagtttcatctgcacccttagtagagcaggagcaacacaagcaaatccagtcacaggctgccgaaattagcagcagctccgagctacctatcgcaagaagatcttcacttcataggtttctcgagaagaggaaagatagggcaactgttagagctccataccaagttgtacgtaacaatccgttgttaccatcttcttcgaatactaatggtgaatcatcttctaaggatagcgaagatcagctcgatctcaatttcaagttatagccagaactccactctcgcagttggaattccataagcttttttttggttgaccaccactgcatgagctagtagtattaatatatatttagatcagtgatttgaagattatttttccagctcagcttagcttacagattatatttcttgtattagatatcgtttattattaccaactgaatattatgacttttttggttgttaaaatagaatgtgtaattaatctttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28512" stop="30057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28812" g_stop="28939" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29245" g_stop="29302" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="186" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29406" g_stop="29758" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="539" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E291671" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291671" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28812" e_stop="28939"/>
          <exon e_start="29245" e_stop="29302"/>
          <exon e_start="29406" e_stop="29758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCGGTGAGCAAATTACATCCTTCTTTTTCATTTTATATAGCAGTATTTGACTACACACAAAATATATGAAAGGTAGACAGACGTTTGGGGTCTACTTTAATACTCTTCAAACAAGTGGTCTTAAACTGTCATGATGTATAAACAACTACGTTATGTTAAAAGAGTTTCCAATATAAAACATATTTTTTCTTAAACGGACTAAAAAGAATAGGATATAAAATGAAATAAAGCGAGTACTACTTACTCATGTTGCATGATAAAATTTTCACAGATCGGTTCTAATATGCATTATATCTTTGGTTTCTCAGAGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAGGTAAGCGGAATTTAAATTTGTGTTTATACCAAAACTTTTTCCAAACAACTTTTGAGGTTTGTTTAGTGTAAAAGAATCTCACTTCTTTTTCTGTCTTATTCAGGGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATTAATATATATTTAGATCAGTGATTTGAAGATTATTTTTCCAGCTCAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATCGTTTATTATTACCAACTGAATATTATGACTTTTTTGGTTGTTAAAATAGAATGTGTAATTAATCTTTG</genome_strand>
        <mrna_strand>ACTCCATGTTTGTAGTAGTACTANAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCG.................................................................................................................................................................................................................................................................................................................AGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAG.......................................................................................................GGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATTAATATATATTTAGATCAGTGATTTGAAGATTATTTTTCCAGCTCAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATCGTTTATTATTACCAACTGAATATTATGACTTTTTTGGTTGTTAAAATAGAATGTGTAATTAATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217283" ref_strand="+" ref_description="SGN-E217283 [cLEL-21-B16](-)">
      <seq>ctccatgtttgtagtagtactaaaactgatcagcttagctcggatcagtttcatctgcacccttagtagagcaggagcaacacaagccaatccagtcacaggctgccgaaattagcagcagctccgagctacctatcgcaagaagatcttcacttcataggtttctcgagaagaggaaagatagggcaactgttagagctccataccaagttgtacgtaacaatccgttgttaccatcttcttcgaatactaatggtgaatcatcttctaaggatagcgaagatcagctcgatctcaatttcaagttatagccagaactccactctcgcagttggaattccataagcttttttttggttgaccaccactgcatgagctagtagtattaatatatatttagatcagtgatttgaagattatttttccagctcagcttagcttacagattatatttcttgtattagatatcgtttattattaccaactgaatattatgacttttttggttgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28513" stop="30041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28813" g_stop="28939" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29245" g_stop="29302" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="184" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29406" g_stop="29749" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="528" r_length="344" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E217283" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28813" e_stop="28939"/>
          <exon e_start="29245" e_stop="29302"/>
          <exon e_start="29406" e_stop="29749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCGGTGAGCAAATTACATCCTTCTTTTTCATTTTATATAGCAGTATTTGACTACACACAAAATATATGAAAGGTAGACAGACGTTTGGGGTCTACTTTAATACTCTTCAAACAAGTGGTCTTAAACTGTCATGATGTATAAACAACTACGTTATGTTAAAAGAGTTTCCAATATAAAACATATTTTTTCTTAAACGGACTAAAAAGAATAGGATATAAAATGAAATAAAGCGAGTACTACTTACTCATGTTGCATGATAAAATTTTCACAGATCGGTTCTAATATGCATTATATCTTTGGTTTCTCAGAGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAGGTAAGCGGAATTTAAATTTGTGTTTATACCAAAACTTTTTCCAAACAACTTTTGAGGTTTGTTTAGTGTAAAAGAATCTCACTTCTTTTTCTGTCTTATTCAGGGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATTAATATATATTTAGATCAGTGATTTGAAGATTATTTTTCCAGCTCAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATCGTTTATTATTACCAACTGAATATTATGACTTTTTTGGTTGTTAAAATAGAATGTGTAAT</genome_strand>
        <mrna_strand>CTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTT-AGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCCAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCG.................................................................................................................................................................................................................................................................................................................AGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAG.......................................................................................................GGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATTAATATATATTTAGATCAGTGATTTGAAGATTATTTTTCCAGCTCAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATCGTTTATTATTACCAACTGAATATTATGACTTTTTTGGTTGTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572156" ref_strand="+" ref_description="SGN-E572156 [31266]">
      <seq>cttttttcttttttcttttttttttcttcttcctctcggagaccttcttctatctcaccgtgaggtcaccggaaacccgatcacgccggtaattatttctccgatctcggaatagtagttgagaaaatgctgaatcagaggctaaaacaagagcaacaacaagccttgatgcagcaagctcttcttcaacaacagtcactctatcaccctggcctaatagctgctcctcagataccaagtggaaatctacctcctgggtttgatccaagtacatgccgcagcgtgtatattgggaatattcacccacaggtgtcagaaactcttcttcatgaacttttttcatgtactggtctggttgaagggtgcaaacttgtaaggaaggactagtcatcttatggctttgttcattactatgaccgtagatctgctgaacttgctatagttactcaaaatggaaggcacctgtttgggcagcctattaaagttaactgggcatatgccagtggacagagagaggatacttcaagtcacttcaatgtatttgttggagatctgagcccagaagttactgatgccatgtngtttgcttgcttctctgtttaccctagttgctctgatgctagggtaatgtgggatcagcagactgggcgtcctaggggtatcggattcgtttctttccggaaccaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31781" stop="35269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32079" g_stop="32311" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32312" i_stop="33798" i_length="1487">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33799" g_stop="33851" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="284" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33852" i_stop="34047" i_length="196">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34048" g_stop="34150" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="387" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34151" i_stop="34328" i_length="178">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34329" g_stop="34405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34406" i_stop="34482" i_length="77">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34483" g_stop="34544" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="526" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34545" i_stop="34649" i_length="105">
            <donor d_prob="0.808" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34650" g_stop="34737" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="614" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34738" i_stop="34892" i_length="155">
            <donor d_prob="0.589" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34893" g_stop="34968" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="690" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E572156" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32079" e_stop="32311"/>
          <exon e_start="33799" e_stop="33851"/>
          <exon e_start="34048" e_stop="34150"/>
          <exon e_start="34329" e_stop="34405"/>
          <exon e_start="34483" e_stop="34544"/>
          <exon e_start="34650" e_stop="34737"/>
          <exon e_start="34893" e_stop="34968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCTTTTTTTTCTTTTTTTTTTCTTCTTCTTCTCGGAGACCTTCTTCTATATCACCGCGAGGACACAGGAAATCCAATCACGCCGGTAATTATTTCTCCGATCTCGGAGTAGTAGTTGAGAAAATGCTGAATCATAGGCTAAAACAAGAACAACAACAAGCCTTGATGCAGCAAGCTCTTCTTCAACAACAGTCACTCTATCACCCTGGCCTTATAGCTGCTCCTCAGGTTTGTATTCGGTTAGGTTGAATTTTCCACTTTGTCTTATATTTTCGGTTGATTTATTTCTGTTTCATTTTACTTTAGGTTGGTTGTTCTAGCTCTCTAGGTTTTGTTTCTGTCAGATTAGCTCTCTAGGTTTTGTTTCTGTCAGATTAATGGATATTTGCTTTCAAATGATATTTGATACTTCTTGTGGTGTAGTACATTGTATTAACTTTTCAAAAATGATCTCGATGTGGACCCTTTTTCTTTCCATAAAATTGTGGTGTTGTTTGGCATGATAGACACTTAGGGTTTGGTTGTATAATGTGTATTGCTGAAACAACTTTAAAGATACTTTTAACTTGGTGTAGTATTGTTGGCTTTGGGACAAATTCCTATGCTTTCCCCCCCAAATTACCTCACATATCATTAAGAGTACCCAACACTTTACGAGTGTTTTCCTGTTCTTTTTTTGTGACTTTGCTTCCACACACTAATAATCTCTGCTTGAACTGCGTTCCACATCACCCATCTCCATTCATGGGGTTATTTTTGTAATTAACTGTTGCCACCCACATCTATAGTAGCCACCAAAGTTGCTAGCTTCTTTTGTGTATGCATCTTCAATGCTATGGGCAAAGGTAGAAAATTGGACTGTAAATGTGAAAAGGCGTTAAGTCAGGCCCTATACATTTATATGACTTAATTTATCACCTGTAGTCATTTATATAACCCATTAGTTTATGCATATCCTTAATTTTTTCCACCTTTATGAATATTGGCTGTCATCATTTCTTCTTTTTCTTTCCTATAAGTAGGTTGCCTTTATTTCAAAATAGCTTCTTTAGGGTATAAAATTTATGCATTTCATTGGTTCTGATATTGTTTTCACTTAGGAGTGGTTTGTAGTGTAATTTGAGTTGGGGTGCTATCCTCCTTTATCGAAGTGTCTTGTTAGTGAAGTGTGAAGTATATAAGATAACTCTTACAATTATGGGTTGTCCTCAGTATTTAATTTTATTTTTTTAATAAGTAGATTGCCTGGATTTTAAACCTAGCTTCTTGGGGTACAGAATCTATTCATTTCCTTGCTTCTGAAATTTTTTTCATGTTGGAGTTTCATATAGTGTAATTCTAGGAGATATTTTTGAGTTGGGGAACTATCCTCTTTTGCCGAAGTGTCTTATTAGTGACGTATGAAGCATATAAATAGATCTTATGTTAATAGGGGTATTATCTGAATTCATTAGAGTGTGTCATGAGTTGCTCTGAATTGACTTTTACCAAACAACTATTAACCTTTTCTCTTCAAGAATGAAGTTAATAAAAGGAAAGTAGGGGGGGGGGGGGTTTGTGTGGGTAGTGCTGTGTATGGGTAACTATCAACAAAAAATGACGAAAAGATACAGTATCTTTTACTTGAAAGTTATATTTCCTGGGGTTTCTGATATGTAGTTTGTATGGTATTTATATTACTTTCCTCTATTTTATTTGTACGTACTTTGATGCAGATACCAAGTGGAAATCTACCTCCTGGGTTTGATCCAAGTACATGCCGCAGCGTGTGAGTGTGTTATTTTTTACTATTGATTGTTTGCCTTCTAGTTTATACTGGTATGCCTTGAATTTTACATACCAGCTAATGCTCTTGCTGTTGTGATTTAGATACTGGAGGAGGTTCTTATAGATACGATGATTTTCCTTTGTTCTTTTTTACCTCTTTTGAAAGTTCTAGTTTTTTCATTTTTGAGAAAATGCAGGTATATTGGGAATATTCACCCCCAGGTGTCTGAAACTCTTCTTCATGAACTTTTTTCATGTACTGGTCTGGTTGAAGGGTGCAAACTTGTAAGGAAGGACAAGGTACATCTTTCATCCTTGTGCAACTTGACAGCATTTTCTGTCGTTACTGTTTAATATGTTTTGTTGATGTTTTCCCTTTCTTCTCCTTGTCTTATCTAGGCATTTTTCTTTTCCTTGTCTTGTCTAGGCATTTTTCTATTATATGACTTTAAAACTGATTTTGCTTTGTCTCGTGCAGTCATCTTATGGCTTTGTTCATTATTATGACCGTAGGTCTGCTGAACTTGCTATAGTTACTCAAAATGGAAGGCACCTGTAAGTAGGCTTTTGTTAGCTGTGTTTTGCTTTAGGCCTTTTTCCTTTTTACCAAGGTTCATGCTGTTTGTTTTCAGGTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCCAGTGGACAGAGGGAGGATACTTCAAGTGCGTTCAGTTCCTGTTTTAGTATAATGCAATTTGTGACTTCGCTTTTAGTTCATTATGTTGCGTTGGAGTGTGTAAATTTGTGTACTAATTTTTTTTTGGTAGGTCACTTCAATGTATTTGTTGGTGATCTGAGCCCAGAAGTTACTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTCGTAAGTACCTTTTCCTCCGTGATGCCTCCCTCAGAAGGCGCTCGGCGTGGTCAATATATTTACTCTAGAACGTGTCAAGACACACCAACACAAAAGATGATAGTTTACTTAAATGTGTACATCCAGTGGCTAATTATATCCATTCCAATTGATAGTGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAG</genome_strand>
        <mrna_strand>CTTTTTTC-T-TTTTTCTTTTTTTTTTCTTCTTCCTCTCGGAGACCTTCTTCTATCTCACCGTGAGGTCACCGGAAACCCGATCACGCCGGTAATTATTTCTCCGATCTCGGAATAGTAGTTGAGAAAATGCTGAATCAGAGGCTAAAACAAGAGCAACAACAAGCCTTGATGCAGCAAGCTCTTCTTCAACAACAGTCACTCTATCACCCTGGCCTAATAGCTGCTCCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAGTGGAAATCTACCTCCTGGGTTTGATCCAAGTACATGCCGCAGCGT....................................................................................................................................................................................................GTATATTGGGAATATTCACCCACAGGTGTCAGAAACTCTTCTTCATGAACTTTTTTCATGTACTGGTCTGGTTGAAGGGTGCAAACTTGTAAGGAAGGACTAG..................................................................................................................................................................................TCATCTTATGGCTTTGTTCATTACTATGACCGTAGATCTGCTGAACTTGCTATAGTTACTCAAAATGGAAGGCACCT.............................................................................GTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCCAGTGGACAGAGAGAGGATACTTCAA.........................................................................................................GTCACTTCAATGTATTTGTTGGAGATCTGAGCCCAGAAGTTACTGATGCCATGTNGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTC...........................................................................................................................................................TGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTCCTAGGGGTATCGGATTCGTTTCTTTCCGGAACCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584506" ref_strand="+" ref_description="SGN-E584506 [10333]">
      <seq>ctggcctaatagctgctcctcagataccaagtggaaatctacctcctgggtttgatccaagtacatgccgcagcgtgtatattgggaatattcacccacaggtgtcagaaactcttcttcatgaacttttttcatgtactggtctggttgaagggtgcaaacttgtaaggaaggacaagtcatcttatggctttgttcattactatgaccgtagatctgctgaacttgctatagttactcaaaatggaaggcacctgtttgggcagcctattaaagttaactgggcatatgccagtggacagagagaggatacttcaagtcacttcaatgtatttgttggagatctgagcccagaagttactgatgccatgttgtttgcttgcttctctgtttaccctagttgctctgatgctagggtaatgtgggatcagcagactgggcgttctaggggttttggatttgtttctttccggaaccaacaggatgcccaaagtgcaattaatgatttgactgggaaatggcttggtagtagacagatacgttgtaactgggctacaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33496" stop="35595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33799" g_stop="33851" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="76" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33852" i_stop="34047" i_length="196">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34048" g_stop="34150" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="179" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34151" i_stop="34328" i_length="178">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34329" g_stop="34405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="256" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34406" i_stop="34482" i_length="77">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34483" g_stop="34544" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34545" i_stop="34649" i_length="105">
            <donor d_prob="0.808" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34650" g_stop="34737" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="406" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34738" i_stop="34892" i_length="155">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34893" g_stop="34968" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="482" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34969" i_stop="35054" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35055" g_stop="35085" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="513" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="35086" i_stop="35244" i_length="159">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35245" g_stop="35295" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="564" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E584506" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33799" e_stop="33851"/>
          <exon e_start="34048" e_stop="34150"/>
          <exon e_start="34329" e_stop="34405"/>
          <exon e_start="34483" e_stop="34544"/>
          <exon e_start="34650" e_stop="34737"/>
          <exon e_start="34893" e_stop="34968"/>
          <exon e_start="35055" e_stop="35085"/>
          <exon e_start="35245" e_stop="35295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCAAGTGGAAATCTACCTCCTGGGTTTGATCCAAGTACATGCCGCAGCGTGTGAGTGTGTTATTTTTTACTATTGATTGTTTGCCTTCTAGTTTATACTGGTATGCCTTGAATTTTACATACCAGCTAATGCTCTTGCTGTTGTGATTTAGATACTGGAGGAGGTTCTTATAGATACGATGATTTTCCTTTGTTCTTTTTTACCTCTTTTGAAAGTTCTAGTTTTTTCATTTTTGAGAAAATGCAGGTATATTGGGAATATTCACCCCCAGGTGTCTGAAACTCTTCTTCATGAACTTTTTTCATGTACTGGTCTGGTTGAAGGGTGCAAACTTGTAAGGAAGGACAAGGTACATCTTTCATCCTTGTGCAACTTGACAGCATTTTCTGTCGTTACTGTTTAATATGTTTTGTTGATGTTTTCCCTTTCTTCTCCTTGTCTTATCTAGGCATTTTTCTTTTCCTTGTCTTGTCTAGGCATTTTTCTATTATATGACTTTAAAACTGATTTTGCTTTGTCTCGTGCAGTCATCTTATGGCTTTGTTCATTATTATGACCGTAGGTCTGCTGAACTTGCTATAGTTACTCAAAATGGAAGGCACCTGTAAGTAGGCTTTTGTTAGCTGTGTTTTGCTTTAGGCCTTTTTCCTTTTTACCAAGGTTCATGCTGTTTGTTTTCAGGTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCCAGTGGACAGAGGGAGGATACTTCAAGTGCGTTCAGTTCCTGTTTTAGTATAATGCAATTTGTGACTTCGCTTTTAGTTCATTATGTTGCGTTGGAGTGTGTAAATTTGTGTACTAATTTTTTTTTGGTAGGTCACTTCAATGTATTTGTTGGTGATCTGAGCCCAGAAGTTACTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTCGTAAGTACCTTTTCCTCCGTGATGCCTCCCTCAGAAGGCGCTCGGCGTGGTCAATATATTTACTCTAGAACGTGTCAAGACACACCAACACAAAAGATGATAGTTTACTTAAATGTGTACATCCAGTGGCTAATTATATCCATTCCAATTGATAGTGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAGGTATCCTTTTATCTACATTTAGTTTATATTGTCTTTTGGATAATGCATGACTTTGTTCCCATTTAATCTTTGTTGTTCTTATCCAGGATGCCCAAAGTGCAATTAATGATTTAACTGGTAAGTCGCCATAAAAGTTTTCTGCATTCTGTTAATTTATTACTGATTGATGCACTTGTTGGATTATTTCAAAGCAATTCAGAACCAGAAGATTTTGTTTTACCTCTTGCATCACAGATGTTCCTCCCCAAAAGCTGATTGCTTGTGTTATGATATCAGGGAAATGGCTTGGTAGTAGACAGATACGTTGTAACTGGGCTACAAAAGGAG</genome_strand>
        <mrna_strand>ATACCAAGTGGAAATCTACCTCCTGGGTTTGATCCAAGTACATGCCGCAGCGT....................................................................................................................................................................................................GTATATTGGGAATATTCACCCACAGGTGTCAGAAACTCTTCTTCATGAACTTTTTTCATGTACTGGTCTGGTTGAAGGGTGCAAACTTGTAAGGAAGGACAAG..................................................................................................................................................................................TCATCTTATGGCTTTGTTCATTACTATGACCGTAGATCTGCTGAACTTGCTATAGTTACTCAAAATGGAAGGCACCT.............................................................................GTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCCAGTGGACAGAGAGAGGATACTTCAA.........................................................................................................GTCACTTCAATGTATTTGTTGGAGATCTGAGCCCAGAAGTTACTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTC...........................................................................................................................................................TGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAG......................................................................................GATGCCCAAAGTGCAATTAATGATTTGACTG...............................................................................................................................................................GGAAATGGCTTGGTAGTAGACAGATACGTTGTAACTGGGCTACAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587487" ref_strand="+" ref_description="SGN-E587487 [41019]">
      <seq>ctgatgccatgttgtttgcttgcttctctgtttaccctagttgctctgatgctagggtaatgtgggatcagcagactgggcgttctaggggttttggatttgtttctttccggaaccaacaggatgcccaaagtgcaattaatgatttgactgggaaatggcttggtagtagacagatacgttgtaactgggctacaaaaggagctaattctaatgatgagcaaggctcagaaatcagaagtgtcgtggaattaactaatggatcatcagaagatggtaaagatccagcaaacagcgatgctcctgaaaacaacacacaatatacaactgtttatgtgggcaatcttgctcccgaggcgacacaactcgatctccatcgccacttttatgccattggtgcaggagtgatagaggaagttcgtgttcaacgtgataaaggatttggttttgtaagatacagcacccatgatgaggcagctttggcaattcaaatgggaaatgcccaatcaattctgtgtgggagacagattaagtgttcttggggtaacaaaccaacaccacctggaacagcctcaaatcctcttccaccaccagccgcagcgccattaggcctcactgccaccgatcttttgacttatgaacggcagctagctatgagcaagatggctggtgttcatgccctcatgcaacctcagggtcaacatcccctgaagcaagcatcaatgggaatgagtgcttctggagcaaagcaggctatatatgatggtggtttccagaaatcttgcctgctcagcagctcatgtattatcagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34392" stop="36728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34692" g_stop="34737" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34738" i_stop="34892" i_length="155">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34893" g_stop="34968" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="122" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34969" i_stop="35054" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35055" g_stop="35085" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="153" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35086" i_stop="35244" i_length="159">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35245" g_stop="35361" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="270" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35362" i_stop="35522" i_length="161">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35523" g_stop="35608" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="356" r_length="86" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35609" i_stop="35765" i_length="157">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35766" g_stop="35942" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="533" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35943" i_stop="36147" i_length="205">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36148" g_stop="36428" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="816" r_length="283" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E587487" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34692" e_stop="34737"/>
          <exon e_start="34893" e_stop="34968"/>
          <exon e_start="35055" e_stop="35085"/>
          <exon e_start="35245" e_stop="35361"/>
          <exon e_start="35523" e_stop="35608"/>
          <exon e_start="35766" e_stop="35942"/>
          <exon e_start="36148" e_stop="36428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTCGTAAGTACCTTTTCCTCCGTGATGCCTCCCTCAGAAGGCGCTCGGCGTGGTCAATATATTTACTCTAGAACGTGTCAAGACACACCAACACAAAAGATGATAGTTTACTTAAATGTGTACATCCAGTGGCTAATTATATCCATTCCAATTGATAGTGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAGGTATCCTTTTATCTACATTTAGTTTATATTGTCTTTTGGATAATGCATGACTTTGTTCCCATTTAATCTTTGTTGTTCTTATCCAGGATGCCCAAAGTGCAATTAATGATTTAACTGGTAAGTCGCCATAAAAGTTTTCTGCATTCTGTTAATTTATTACTGATTGATGCACTTGTTGGATTATTTCAAAGCAATTCAGAACCAGAAGATTTTGTTTTACCTCTTGCATCACAGATGTTCCTCCCCAAAAGCTGATTGCTTGTGTTATGATATCAGGGAAATGGCTTGGTAGTAGACAGATACGTTGTAACTGGGCTACAAAAGGAGCTAATTCTAATGATGAGCAAGGCTCAGAAATCAGAAGTGTCGTGGAATTAACTAATGGATCATCAGGTGTGTACAGTTTTCGAATGACTAGTCCTTAAATTTGATAAAGAGAATTATCCAGAACATGCAAGTGTTCGGTTTTTGTCTGGAAGGTGGCTGGATTCAATGGGTTTAATTTTCTGATATTGATTCTGGCCTTCTTAATTGATGTCTCTTCTTTGTTGCAGAAGATGGTAAAGATCCAGCAAGTAGTGATGCTCCTGAAAACAACCCGCAATATACAACTGTTTATGTGGGTAATCTTGCTCCTGAGGTAAGATAGTCTTTCTGAATTCTGCCTGTAAGGAGAATGTTAAATGGTGTTGTGAGACCTTTAGGAGTAAACCATAAGGGTGCCTTTGCCCTAGCCCTTGGACAGATGTTCATTGTGCTTTGATAAAACTTAGTCCTATTATTTTCATTTGTTTCAGGCGACACAACTCGATCTCCATCGCCACTTTTATGTCATTGGTGCAGGAGTGATAGAGGAAGTTCGGGTTCAACGTGATAAAGGATTTGGTTTTGTAAGATACAGCACCCATGATGAGGCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTTTGTGTGGGAGACAGATTAAGGTAACATCATTCTACCTGCAGCTTTTTCCAGTATTACACTTGTTTTGAAGTTCATGCTGTATTGGATTATGTTAGCTTCTTTATAAAATTGTAGAATGATACTTATCAAGACAATATGTAGTTGTATCTCAACTTTAGGTGTGTGTTTTAATCAATTCTATTTTATCAAAACATTTAAGCTCAATTTTCTCATGTGTATTTCCAGTGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCTGCAGCGCCATTAGGCCTTACTGCCACTGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGTAAGATGGCTGGTGTTCATGCCCTCATGCAATCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAG-AATCTTG-CTGCTCAGCAGCTCATGTATTACCAGTAATG</genome_strand>
        <mrna_strand>CTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTC...........................................................................................................................................................TGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAG......................................................................................GATGCCCAAAGTGCAATTAATGATTTGACTG...............................................................................................................................................................GGAAATGGCTTGGTAGTAGACAGATACGTTGTAACTGGGCTACAAAAGGAGCTAATTCTAATGATGAGCAAGGCTCAGAAATCAGAAGTGTCGTGGAATTAACTAATGGATCATCAG.................................................................................................................................................................AAGATGGTAAAGATCCAGCAAACAGCGATGCTCCTGAAAACAACACACAATATACAACTGTTTATGTGGGCAATCTTGCTCCCGAG.............................................................................................................................................................GCGACACAACTCGATCTCCATCGCCACTTTTATGCCATTGGTGCAGGAGTGATAGAGGAAGTTCGTGTTCAACGTGATAAAGGATTTGGTTTTGTAAGATACAGCACCCATGATGAGGCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTCTGTGTGGGAGACAGATTAAG.............................................................................................................................................................................................................TGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCCGCAGCGCCATTAGGCCTCACTGCCACCGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGCAAGATGGCTGGTGTTCATGCCCTCATGCAACCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAAGCAGGCTATATATGATGGTGGTTTCCAGAAATCTTGCCTGCTCAGCAGCTCATGTATTATCAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448684" ref_strand="+" ref_description="SGN-E448684 [cSTS-3-N4]">
      <seq>gcagctttggcaattcaaatgggaaatgcccaatcaattctgtgtgggagacagattaagtgttcttggggtaacaaaccaacaccacctggaacagcctcaaatcctcttccaccaccagccgcagcgccattaggcctcactgccaccgatcttttgacttatgaacggcagctagctatgagcaagatggctggtgttcatgccctcatgcaacctcagggtcaacatcccctgaagcaagcatcaatgggaatgagtgcttctggagcaagccaggctatatatgatggtggtttccagaatcttgctgctcagcagctcatgtattatcagtgatgtgcagaaatatgtcttgacatttcgttgcctttcttttagactagatgagtttttataaatgtctagattttcttgtattctgttttcgaaatcaaggcattggtaatgcggtactcacacgtatgaatattatgaggtgaacattttatgtctttgatttcgtaaggcgagtgtatactgtgagttttatgtgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35583" stop="36922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35883" g_stop="35942" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35943" i_stop="36147" i_length="205">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36148" g_stop="36628" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="543" r_length="483" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E448684" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35883" e_stop="35942"/>
          <exon e_start="36148" e_stop="36628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTTTGTGTGGGAGACAGATTAAGGTAACATCATTCTACCTGCAGCTTTTTCCAGTATTACACTTGTTTTGAAGTTCATGCTGTATTGGATTATGTTAGCTTCTTTATAAAATTGTAGAATGATACTTATCAAGACAATATGTAGTTGTATCTCAACTTTAGGTGTGTGTTTTAATCAATTCTATTTTATCAAAACATTTAAGCTCAATTTTCTCATGTGTATTTCCAGTGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCTGCAGCGCCATTAGGCCTTACTGCCACTGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGTAAGATGGCTGGTGTTCATGCCCTCATGCAATCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTACCAGTAATGTGCAGAAATATGGCTTGACATTTCGTTGCCTTTCGTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTCTCGAAATCAAGGC-TTGGT-ATGCGGTACTCACATGTAAGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGTGAGTGTATACTGCGAGTTTTATGTTTATTCCAA</genome_strand>
        <mrna_strand>GCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTCTGTGTGGGAGACAGATTAAG.............................................................................................................................................................................................................TGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCCGCAGCGCCATTAGGCCTCACTGCCACCGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGCAAGATGGCTGGTGTTCATGCCCTCATGCAACCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTATCAGTGATGTGCAGAAATATGTCTTGACATTTCGTTGCCTTTCTTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTTTCGAAATCAAGGCATTGGTAATGCGGTACTCACACGTATGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGCGAGTGTATACTGTGAGTTTTATGTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422603" ref_strand="+" ref_description="SGN-E422603 [STM-40-P1]">
      <seq>gcagctttggcaattcaaatgggaaatgcccaatcaattctgtgtgggagacagattaagtgttcttggggtaacaaaccaacaccacctggaacagcctcaaatcctcttccaccaccagccgcagcgccattaggcctcactgccaccgatcttttgacttatgaacggcagctagctatgagcaagatggctggtgttcatgccctcatgcaacctcagggtcaacatcccctgaagcaagcatcaatgggaatgagtgcttctggagcaagccaggctatatatgatggtggtttccagaatcttgctgctcagcagctcatgtattatcagtgatgtgcagaaatatgtcttgacatttcgttgcctttcttttagactagatgagtttttataaatgtctagattttcttgtattctgttttcgaaatcaaggcattggtaatgcggtactcacacgtatgaatattatgaggtgaacattttatgtctttgatttcgtaaggcgagtgtatactgtgagttttatgtgtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35583" stop="36922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35883" g_stop="35942" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35943" i_stop="36147" i_length="205">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36148" g_stop="36627" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="542" r_length="482" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E422603" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35883" e_stop="35942"/>
          <exon e_start="36148" e_stop="36627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTTTGTGTGGGAGACAGATTAAGGTAACATCATTCTACCTGCAGCTTTTTCCAGTATTACACTTGTTTTGAAGTTCATGCTGTATTGGATTATGTTAGCTTCTTTATAAAATTGTAGAATGATACTTATCAAGACAATATGTAGTTGTATCTCAACTTTAGGTGTGTGTTTTAATCAATTCTATTTTATCAAAACATTTAAGCTCAATTTTCTCATGTGTATTTCCAGTGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCTGCAGCGCCATTAGGCCTTACTGCCACTGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGTAAGATGGCTGGTGTTCATGCCCTCATGCAATCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTACCAGTAATGTGCAGAAATATGGCTTGACATTTCGTTGCCTTTCGTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTCTCGAAATCAAGGC-TTGGT-ATGCGGTACTCACATGTAAGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGTGAGTGTATACTGCGAGTTTTATGTTTATTCCA</genome_strand>
        <mrna_strand>GCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTCTGTGTGGGAGACAGATTAAG.............................................................................................................................................................................................................TGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCCGCAGCGCCATTAGGCCTCACTGCCACCGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGCAAGATGGCTGGTGTTCATGCCCTCATGCAACCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTATCAGTGATGTGCAGAAATATGTCTTGACATTTCGTTGCCTTTCTTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTTTCGAAATCAAGGCATTGGTAATGCGGTACTCACACGTATGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGCGAGTGTATACTGTGAGTTTTATGTGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422604" ref_strand="-" ref_description="SGN-E422604 [STM-40-P1]">
      <seq>ccaatcaattctgtgtgggagacagattaagtgttcttggggtaacaaaccaacaccacctggaacagcctcaaatcctcttccaccaccagccgcagcgccattaggcctcactgccaccgatcttttgacttatgaacggcagctagctatgagcaagatggctggtgttcatgccctcatgcaacctcagggtcaacatcccctgaagcaagcatcaatgggaatgagtgcttctggagcaagccaggctatatatgatggtggtttccagaatcttgctgctcagcagctcatgtattatcagtgatgtgcagaaatatgtcttgacatttcgttgcctttcttttagactagatgagtttttataaatgtctagattttcttgtattctgttttcgaaatcaaggcattggtaatgcggtactcacacgtatgaatattatgaggtgaacattttatgtctttgatttcgtaaggcgagtgtatactgtgagttgaaaggtaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35612" stop="36922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35912" g_stop="35942" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35943" i_stop="36147" i_length="205">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36148" g_stop="36630" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="516" r_length="485" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E422604" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422604" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35912" e_stop="35942"/>
          <exon e_start="36148" e_stop="36630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCAATTTTGTGTGGGAGACAGATTAAGGTAACATCATTCTACCTGCAGCTTTTTCCAGTATTACACTTGTTTTGAAGTTCATGCTGTATTGGATTATGTTAGCTTCTTTATAAAATTGTAGAATGATACTTATCAAGACAATATGTAGTTGTATCTCAACTTTAGGTGTGTGTTTTAATCAATTCTATTTTATCAAAACATTTAAGCTCAATTTTCTCATGTGTATTTCCAGTGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCTGCAGCGCCATTAGGCCTTACTGCCACTGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGTAAGATGGCTGGTGTTCATGCCCTCATGCAATCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTACCAGTAATGTGCAGAAATATGGCTTGACATTTCGTTGCCTTTCGTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTCTCGAAATCAAGGC-TTGGT-ATGCGGTACTCACATGTAAGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGTGAGTGTATACTGCGAGTTTTATGTTTATTCCAATG</genome_strand>
        <mrna_strand>CCAATCAATTCTGTGTGGGAGACAGATTAAG.............................................................................................................................................................................................................TGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCCGCAGCGCCATTAGGCCTCACTGCCACCGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGCAAGATGGCTGGTGTTCATGCCCTCATGCAACCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTATCAGTGATGTGCAGAAATATGTCTTGACATTTCGTTGCCTTTCTTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTTTCGAAATCAAGGCATTGGTAATGCGGTACTCACACGTATGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGCGAGTGTATACTGTGAGTTGAAAGGTAAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608090" ref_strand="+" ref_description="SGN-E608090 [24069]">
      <seq>ctgaagcaagcatcaatgggaatgagtgcttctggagcaagccaggctatatatgatggtggtttccagaatcttgctgctcagcagctcatgtattatcagtgatgtgcagaaatatgtcttgacatttcgttgcctttcttttagactagatgagtttttataaatgtctagattttcttgtattctgttttcgaaatcaaggcattggtaatgcggtactcacacgtatgaatattatgaggtgaacattttatgtctttgatttcgtaaggcgagtgtatactgtgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36022" stop="36910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36322" g_stop="36616" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E608090" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36322" e_stop="36616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTACCAGTAATGTGCAGAAATATGGCTTGACATTTCGTTGCCTTTCGTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTCTCGAAATCAAGGC-TTGGT-ATGCGGTACTCACATGTAAGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGTGAGTGTATACTGCGAGTTTTA</genome_strand>
        <mrna_strand>CTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTATCAGTGATGTGCAGAAATATGTCTTGACATTTCGTTGCCTTTCTTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTTTCGAAATCAAGGCATTGGTAATGCGGTACTCACACGTATGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGCGAGTGTATACTGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549313" ref_strand="+" ref_description="SGN-E549313 [TUS-69-E7]">
      <seq>taaaaacaagaaggtggagatactggaggcgtgaactctaatctgtatcctacggggctaaaaaatggcaggtgaaccagttgatgtgaatgaatttgaagagctagctaggcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcaaagaaaatattgaagcatttcatagaatcataatccagccaagaatacttgttgatgtgagcagaatagacatgtcaactgttatactcagtcacaagacgtcagctcctataatgattgccccaactatgatgcacaaatttgcacaccctgaaggttgtactaaatcaattactccattcatttcaatttgtttgtgtggttttgacttgacacaacatttaagaaagtaaagaagatttttgtgtcttattatcttaaactaaagatatgtagaatgtaccaaaagatgtttaaccttgtgcttttaaacatgtcacgtgcaaagatagacttaaagacttctcaaataagaaaagaggaaccgactaaaaaggaaagtaagagaaacaaattggaacggagaatatctccttggtcacttatggttaactgattctacaaacctgttatatttatgccaggagaaattgcaacagctagaggtgctgcatcgtgtaatgttatcgcggtaatattttctggaaaaaaaagacagattttatcgaattctggtgtctggatgctaaattctcttggataccgggattgtcatttacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47059" stop="45512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46760" g_stop="46705" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46704" i_stop="46605" i_length="100">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46604" g_stop="46454" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="207" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46453" i_stop="46376" i_length="78">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46375" g_stop="45810" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="779" r_length="572" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E549313" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46760" e_stop="46705"/>
          <exon e_start="46604" e_stop="46454"/>
          <exon e_start="46375" e_stop="45810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAGAAGGTGGAGATACTGGAGGCGTGAACTCTAATCTGTATCCTACGGGGTACTAATATCTATACTTCAGAACCTCAGATTCGTCCATCAAAACAAGACCAAAATTCTACTACAAGAACAATTTAACATATGAATGATCATGAGTGCAGGCTAATAAATGGCAGGTGAACCAGTTGATGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCATAGAATCATGTAAGTTTGTAATTTCTTGCTCTTGAATTGTCCATGGACAGATATCTATCACTATTAACTAATTTTCAAAAAACTCAGAATCCAGCCAACAATACTTGTTGATGTGAGCAGAATAGACATGTCAACTGTTATACTCAGTCACAAGACGTCAGCTCCTATAATGATTGCCCCAACTATGATGCACAAATTTGCACACCCTGAAGGTTGTACTAAATCAATTACTCAATTCATTTCAATTTGTTTGTCTGATTTTGACTTGACACAACATTTAAGAAGTAAAAGAAGATTTTTGTATCTTATTATCTTAAACTAAAGATATGTAGACTGTACC---A-ATG----ATCTTATGCTTTTAAACATGTCAGGTGGAAAGATAGACTTAAAGACTTCTCAAAGAAGGAAAGAGGAACCGACCAAAAAGGAAAGTAAGAGAAACAAATTGAAACGGGAAGTATCTCCTTAGTCGCTTATGGTTAACTGATTCTACAAACCTGTTATATTTATGCCAGGAGAAATTGCAACAGCTAGAGGCGCTGCATCATGTAATGTTATCGCGGTAATATTTTCTGAAAAAAAAAGAACAAATTTTATCGAATTCTAGTGTCTGGATGCTAAAATTCTCTTGGATACAGGGATTGTCATTTACGTGC</genome_strand>
        <mrna_strand>TAAAAACAAGAAGGTGGAGATACTGGAGGCGTGAACTCTAATCTGTATCCTACGGG....................................................................................................GCTAAAAAATGGCAGGTGAACCAGTTGATGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAAGAAAATATTGAAGCATTTCATAGAATCAT..............................................................................AATCCAGCCAAGAATACTTGTTGATGTGAGCAGAATAGACATGTCAACTGTTATACTCAGTCACAAGACGTCAGCTCCTATAATGATTGCCCCAACTATGATGCACAAATTTGCACACCCTGAAGGTTGTACTAAATCAATTACTCCATTCATTTCAATTTGTTTGTGTGGTTTTGACTTGACACAACATTTAAGAAAGTAAAGAAGATTTTTGTGTCTTATTATCTTAAACTAAAGATATGTAGAATGTACCAAAAGATGTTTAACCTTGTGCTTTTAAACATGTCACGTGCAAAGATAGACTTAAAGACTTCTCAAATAAGAAAAGAGGAACCGACTAAAAAGGAAAGTAAGAGAAACAAATTGGAACGGAGAATATCTCCTTGGTCACTTATGGTTAACTGATTCTACAAACCTGTTATATTTATGCCAGGAGAAATTGCAACAGCTAGAGGTGCTGCATCGTGTAATGTTATCGCGGTAATATTTTCTGGAAAAAAAAG-ACAGATTTTATCGAATTCTGGTGTCTGGATGCT-AAATTCTCTTGGATACCGGGATTGTCATTTACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546651" ref_strand="+" ref_description="SGN-E546651 [TUS-70-C1]">
      <seq>cttatattcttgcctcaaaacctccgattctgctctcaaaagaaccaaaattcagtgctttaacatataaatgcataaatggcaggtgaaccagttaacataaatgaatttgaagagctagctaagcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcagagaaaatattgaagcatttcgtagaattactatccggccaagaatactagttgatgtgagcaaaattgacatgtcaactattatactcggtcacaagacatcagctccaattatagttgccccaacttcgtcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggcgctgcagcatgtaatgttatcatgggagtggcatttacgtcaacatgcacaatggaggaggttgcttcaagctgcaaggctgttcgcttcattcagactttcgctttcaagagagagataacagcaaatatggtacagagagctgaacgcaatgggttcagggctataatcctcactgctgatactcccaggctaggtagaaaggaggcagatataaagaataagatgattgcacctcctttcaagaactttgaaggtcttatatcaactgtagctgtttctgacaaaggctcaaatgttgaagcttacgctgcagaaactcttgatccttcgttttgctggaaggatatagcatggttaaatcaattaccaagttgccaattctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46722" stop="49248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47022" g_stop="47242" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47311" g_stop="47435" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="346" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94">
            <donor d_prob="0.371" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47530" g_stop="47576" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="393" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47907" g_stop="47984" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47985" i_stop="48078" i_length="94">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48079" g_stop="48200" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="593" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48201" i_stop="48362" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.470" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48363" g_stop="48420" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="651" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48421" i_stop="48651" i_length="231">
            <donor d_prob="0.852" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48652" g_stop="48714" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="714" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48715" i_stop="48904" i_length="190">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48905" g_stop="48948" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="757" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E546651" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47022" e_stop="47242"/>
          <exon e_start="47311" e_stop="47435"/>
          <exon e_start="47530" e_stop="47576"/>
          <exon e_start="47907" e_stop="47984"/>
          <exon e_start="48079" e_stop="48200"/>
          <exon e_start="48363" e_stop="48420"/>
          <exon e_start="48652" e_stop="48714"/>
          <exon e_start="48905" e_stop="48948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCACGTAAGTTTGTAACTTCTTGCTCTTGATTAGGTAATAGAGATCACAGCACTAACCTTTTAGAAACTCAGTATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAGGTTCGGATAAATCAATTAGTAAAACCTAGTATGTTAGCTTAAGGTACCCCCACCGCGTAGTTCTTACTCCAAAAAGCTGTTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAATGGTTTTGGTTTGGTAAAAAACATACCTAAAGTATCTACTTTGAGTTCCATACTTGAACTACCATGTGTGCAAGTTTACCAACTATTTAACAAAAAACAATTCAACTATCAGGTAGGAATATGGAACATTTGATAGTTGAGGTATCTTTTGATACATAGTTGGTGATAGTTTAAGTAGGAAACTCACACACATAATAGTTCAGTTATTGAACTCAAAAAAGCAGGATACTTGTAGCTATATTTTTGACCCTTCCGTCTAATATTTTCTAAAAAAACAGATCAAGTTCGAATTCTGGTATGTGAATGCTAAATTCTCTTGGATGTAGGGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTCGTAACTTACTATCCCCAACTCTCACATCCCGGTACATATTTACTGATTTTTGTGTTCTACAAAAGATAGGTAATTTTTTTTTCTTTGAAAATAGGCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAAGTAAGTTGTATATACAATTGTTGTCATTCAAGAATCAACTCTAGCTAAAATCCTTTTCATGATTCATCTTCACTCTAATCCGGAATAGTCGGTTTCATCATTCAGTACTTGAAAAATATATATAATTTTGGTAATCTATGTTGATAAAGAGAACAAATGCAGGATGATTGCACCTCCTTTCAAGAACTTTGAAGGTCTTATATCTACTGTAGCTGTTTCTGTAAGTAAAAGCAATTATTAGACATATTGACAACTTAAGCTGAAAAGCAAAACTTGAAACTCCTCAAAGAAACTTAGTTTGCAGGACTACAATGTGTCAAATTAGCTGGTTCCTTCTACTATAAGCATTAGTTTTCTTTTTTATTTTGTTATATAACACAATTTCCATCGATATATCTACTTGAAAAATACTGTACACTAGGCTTACTAATCCACGGATAAAATTCTGCAGGACAAAGGCTCAAATGTTGAAGCTTACGCTGCAGAAACTCTTGATCCTTCGTTTTGCTGGAAGGTACAAAATTTAAAAGTTTAGCATATGTGTTCCTTAATACCACATGAAATGATCATATGATGAAATATATTCTTGGTCCTTGAATGCAAATTATATTGAGGCTGTCAACATTTGTTAAAAGTACATTACGGAAGGAGCATTTCTAGTTTCATAGTCTTCTGTAACCTCACAATCTCCAAAAACTTTGCAGGATATAGCATGGTTAAAATCAATTACCAAGTTGCCAATTCTGAT</genome_strand>
        <mrna_strand>CTTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGCTTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACATAAATGAATTTGAAGAGCTAGCTAAGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAGAGAAAATATTGAAGCATTTCGTAGAATTAC....................................................................TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGACATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG..............................................................................................GAGAAGTTGCAACAGCTAGAGGCGCTGCAGCATGTAATGTTATCATG..........................................................................................................................................................................................................................................................................................................................................GGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTC..............................................................................................GCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATCCTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAA..................................................................................................................................................................GATGATTGCACCTCCTTTCAAGAACTTTGAAGGTCTTATATCAACTGTAGCTGTTTCT.......................................................................................................................................................................................................................................GACAAAGGCTCAAATGTTGAAGCTTACGCTGCAGAAACTCTTGATCCTTCGTTTTGCTGGAAG..............................................................................................................................................................................................GATATAGCATGGTT-AAATCAATTACCAAGTTGCCAATTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546610" ref_strand="+" ref_description="SGN-E546610 [TUS-70-B1]">
      <seq>cttatattcttgcctcaaaacctccgattctgctctcaaaagaaccaaaattcagtgctttaacatataaatgcataaatggcaggtgaaccagttaacataaatgaatttgaagagctagctaagcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcagagaaaatattgaagcatttcgtagaattactatccggccaagaatactagttgatgtgagcaaaattgacatgtcaactattatactcggtcacaagacatcagctccaattatagttgccccaacttcgtcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggcgctgcagcatgtaatgttatcatgggagtggcatttacgtcaacatgcacaatggaggaggttgcttcaagctgcaaggctgttcgcttcattcagactttcgctttcaagagagagataacagcaaatatggtacagagagctgaacgcaatgggttcagggctataatcctcactgctgatactcccaggctaggtagaaaggaggcagatataaagaataagatgattgcacctcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46722" stop="48681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47022" g_stop="47242" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47311" g_stop="47435" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="346" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94">
            <donor d_prob="0.371" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47530" g_stop="47576" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="393" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47907" g_stop="47984" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47985" i_stop="48078" i_length="94">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48079" g_stop="48200" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="593" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48201" i_stop="48362" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.470" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48363" g_stop="48381" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="612" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E546610" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47022" e_stop="47242"/>
          <exon e_start="47311" e_stop="47435"/>
          <exon e_start="47530" e_stop="47576"/>
          <exon e_start="47907" e_stop="47984"/>
          <exon e_start="48079" e_stop="48200"/>
          <exon e_start="48363" e_stop="48381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCACGTAAGTTTGTAACTTCTTGCTCTTGATTAGGTAATAGAGATCACAGCACTAACCTTTTAGAAACTCAGTATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAGGTTCGGATAAATCAATTAGTAAAACCTAGTATGTTAGCTTAAGGTACCCCCACCGCGTAGTTCTTACTCCAAAAAGCTGTTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAATGGTTTTGGTTTGGTAAAAAACATACCTAAAGTATCTACTTTGAGTTCCATACTTGAACTACCATGTGTGCAAGTTTACCAACTATTTAACAAAAAACAATTCAACTATCAGGTAGGAATATGGAACATTTGATAGTTGAGGTATCTTTTGATACATAGTTGGTGATAGTTTAAGTAGGAAACTCACACACATAATAGTTCAGTTATTGAACTCAAAAAAGCAGGATACTTGTAGCTATATTTTTGACCCTTCCGTCTAATATTTTCTAAAAAAACAGATCAAGTTCGAATTCTGGTATGTGAATGCTAAATTCTCTTGGATGTAGGGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTCGTAACTTACTATCCCCAACTCTCACATCCCGGTACATATTTACTGATTTTTGTGTTCTACAAAAGATAGGTAATTTTTTTTTCTTTGAAAATAGGCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAAGTAAGTTGTATATACAATTGTTGTCATTCAAGAATCAACTCTAGCTAAAATCCTTTTCATGATTCATCTTCACTCTAATCCGGAATAGTCGGTTTCATCATTCAGTACTTGAAAAATATATATAATTTTGGTAATCTATGTTGATAAAGAGAACAAATGCAGGATGATTGCACCTCCTTTC</genome_strand>
        <mrna_strand>CTTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGCTTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACATAAATGAATTTGAAGAGCTAGCTAAGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAGAGAAAATATTGAAGCATTTCGTAGAATTAC....................................................................TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGACATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG..............................................................................................GAGAAGTTGCAACAGCTAGAGGCGCTGCAGCATGTAATGTTATCATG..........................................................................................................................................................................................................................................................................................................................................GGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTC..............................................................................................GCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATCCTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAA..................................................................................................................................................................GATGATTGCACCTCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359413" ref_strand="+" ref_description="SGN-E359413 [cLHT-31-O9]">
      <seq>ttatattcttgcctcaaaacctccgattctgctctcaaaagaaccaaaattcagtgctttaacatataaatgcataaatggcaggtgaaccagttaacataaatgaatttgaagagctagctaagcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcagagaaaatattgaagcatttcgtagaattactatccggccaagaatactagttgatgtgagcaaaattgacatgtcaactattatactcggtcacaagacatcagctccaattatagttgccccaacttcgtcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggcgctgcagcatgtaatgttatcatgggagtggcatttacgtcaacatgcacaatggaggaggttgcttcaagctgcaaggctgttcgcttcattcagactttcgctttcaagagagagataacagcaaatatggtacagagagctgaacgcaatgggttcagggctataatcctcactgctgatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46723" stop="48463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47023" g_stop="47242" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47311" g_stop="47435" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="345" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94">
            <donor d_prob="0.371" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47530" g_stop="47576" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="392" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47907" g_stop="47984" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="470" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47985" i_stop="48078" i_length="94">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48079" g_stop="48163" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="555" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E359413" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47023" e_stop="47242"/>
          <exon e_start="47311" e_stop="47435"/>
          <exon e_start="47530" e_stop="47576"/>
          <exon e_start="47907" e_stop="47984"/>
          <exon e_start="48079" e_stop="48163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCACGTAAGTTTGTAACTTCTTGCTCTTGATTAGGTAATAGAGATCACAGCACTAACCTTTTAGAAACTCAGTATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAGGTTCGGATAAATCAATTAGTAAAACCTAGTATGTTAGCTTAAGGTACCCCCACCGCGTAGTTCTTACTCCAAAAAGCTGTTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAATGGTTTTGGTTTGGTAAAAAACATACCTAAAGTATCTACTTTGAGTTCCATACTTGAACTACCATGTGTGCAAGTTTACCAACTATTTAACAAAAAACAATTCAACTATCAGGTAGGAATATGGAACATTTGATAGTTGAGGTATCTTTTGATACATAGTTGGTGATAGTTTAAGTAGGAAACTCACACACATAATAGTTCAGTTATTGAACTCAAAAAAGCAGGATACTTGTAGCTATATTTTTGACCCTTCCGTCTAATATTTTCTAAAAAAACAGATCAAGTTCGAATTCTGGTATGTGAATGCTAAATTCTCTTGGATGTAGGGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTCGTAACTTACTATCCCCAACTCTCACATCCCGGTACATATTTACTGATTTTTGTGTTCTACAAAAGATAGGTAATTTTTTTTTCTTTGAAAATAGGCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTC</genome_strand>
        <mrna_strand>TTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGCTTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACATAAATGAATTTGAAGAGCTAGCTAAGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAGAGAAAATATTGAAGCATTTCGTAGAATTAC....................................................................TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGACATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG..............................................................................................GAGAAGTTGCAACAGCTAGAGGCGCTGCAGCATGTAATGTTATCATG..........................................................................................................................................................................................................................................................................................................................................GGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTC..............................................................................................GCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATCCTCACTGCTGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359539" ref_strand="+" ref_description="SGN-E359539 [cLHT-31-P20]">
      <seq>ttatattcttgcctcaaaacctccgattctgctctcaaaagaaccaaaattcagtgctttaacatataaatgcataaatggcaggtgaaccagttaacataaatgaatttgaagagctagctaagcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcagagaaaatattgaagcatttcgtagaattactatccggccaagaatactagttgatgtgagcaaaattgacatgtcaactattatactcggtcacaagacatcagctccaattatagttgccccaacttcgtcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggcgctgcagcatgtaatgttatcatgggagtggcatttacgtcaacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46723" stop="48231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47023" g_stop="47242" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47311" g_stop="47435" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="345" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94">
            <donor d_prob="0.371" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47530" g_stop="47576" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="392" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47907" g_stop="47931" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="417" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E359539" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47023" e_stop="47242"/>
          <exon e_start="47311" e_stop="47435"/>
          <exon e_start="47530" e_stop="47576"/>
          <exon e_start="47907" e_stop="47931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCACGTAAGTTTGTAACTTCTTGCTCTTGATTAGGTAATAGAGATCACAGCACTAACCTTTTAGAAACTCAGTATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAGGTTCGGATAAATCAATTAGTAAAACCTAGTATGTTAGCTTAAGGTACCCCCACCGCGTAGTTCTTACTCCAAAAAGCTGTTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAATGGTTTTGGTTTGGTAAAAAACATACCTAAAGTATCTACTTTGAGTTCCATACTTGAACTACCATGTGTGCAAGTTTACCAACTATTTAACAAAAAACAATTCAACTATCAGGTAGGAATATGGAACATTTGATAGTTGAGGTATCTTTTGATACATAGTTGGTGATAGTTTAAGTAGGAAACTCACACACATAATAGTTCAGTTATTGAACTCAAAAAAGCAGGATACTTGTAGCTATATTTTTGACCCTTCCGTCTAATATTTTCTAAAAAAACAGATCAAGTTCGAATTCTGGTATGTGAATGCTAAATTCTCTTGGATGTAGGGAGTGGCATTTACGTCAACATGCA</genome_strand>
        <mrna_strand>TTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGCTTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACATAAATGAATTTGAAGAGCTAGCTAAGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAGAGAAAATATTGAAGCATTTCGTAGAATTAC....................................................................TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGACATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG..............................................................................................GAGAAGTTGCAACAGCTAGAGGCGCTGCAGCATGTAATGTTATCATG..........................................................................................................................................................................................................................................................................................................................................GGAGTGGCATTTACGTCAACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731175" ref_strand="+" ref_description="SGN-E731175 [LA26BE02]">
      <seq>atattcttgcctcaaaacctccgattctgctctcaaaagaaccaaaattcagtgatttaacatataaatgcataaatggcaggtgaaccagttaacgtgaatgaatttgaagagctagctaggcaagttcttccaaagatatcctatgacttcttttctggaggagctgaggaccagcacacactcaaacaaaatattgaagcatttcgtagaatcactatccggccaagaatactagttgatgtgagcaaaattgatatgtcaactattatactcggtcacaagacatcagctccaattatagttgccccaacttcgtcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggtgctgcagcatgtaatgttatcatgggagtggcatttacgtcaacatgcacaatggaggaggttgcttcaagctgcaaggctgttcgcttcattcagactttcgctttcaagagagagataacagcaaatatggtacagagagctgaacgcaatgggttcagggctataatactcactgctgatactcccaggctaggtagaaaggaggcagatataaagaataagatgattgcacctcctttcaagaactttgaaggtcttatatctactgtagctgtttctgacaaaggctcaaatgttgaagcttacgctgcagaaactcttgatccttcgttttgctggaaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46725" stop="49017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47025" g_stop="47242" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47311" g_stop="47435" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="343" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94">
            <donor d_prob="0.371" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47530" g_stop="47576" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="390" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47907" g_stop="47984" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="468" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47985" i_stop="48078" i_length="94">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48079" g_stop="48200" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="590" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48201" i_stop="48362" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.470" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48363" g_stop="48420" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="648" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48421" i_stop="48651" i_length="231">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48652" g_stop="48714" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="711" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E731175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47025" e_stop="47242"/>
          <exon e_start="47311" e_stop="47435"/>
          <exon e_start="47530" e_stop="47576"/>
          <exon e_start="47907" e_stop="47984"/>
          <exon e_start="48079" e_stop="48200"/>
          <exon e_start="48363" e_stop="48420"/>
          <exon e_start="48652" e_stop="48714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCACGTAAGTTTGTAACTTCTTGCTCTTGATTAGGTAATAGAGATCACAGCACTAACCTTTTAGAAACTCAGTATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAGGTTCGGATAAATCAATTAGTAAAACCTAGTATGTTAGCTTAAGGTACCCCCACCGCGTAGTTCTTACTCCAAAAAGCTGTTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAATGGTTTTGGTTTGGTAAAAAACATACCTAAAGTATCTACTTTGAGTTCCATACTTGAACTACCATGTGTGCAAGTTTACCAACTATTTAACAAAAAACAATTCAACTATCAGGTAGGAATATGGAACATTTGATAGTTGAGGTATCTTTTGATACATAGTTGGTGATAGTTTAAGTAGGAAACTCACACACATAATAGTTCAGTTATTGAACTCAAAAAAGCAGGATACTTGTAGCTATATTTTTGACCCTTCCGTCTAATATTTTCTAAAAAAACAGATCAAGTTCGAATTCTGGTATGTGAATGCTAAATTCTCTTGGATGTAGGGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTCGTAACTTACTATCCCCAACTCTCACATCCCGGTACATATTTACTGATTTTTGTGTTCTACAAAAGATAGGTAATTTTTTTTTCTTTGAAAATAGGCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAAGTAAGTTGTATATACAATTGTTGTCATTCAAGAATCAACTCTAGCTAAAATCCTTTTCATGATTCATCTTCACTCTAATCCGGAATAGTCGGTTTCATCATTCAGTACTTGAAAAATATATATAATTTTGGTAATCTATGTTGATAAAGAGAACAAATGCAGGATGATTGCACCTCCTTTCAAGAACTTTGAAGGTCTTATATCTACTGTAGCTGTTTCTGTAAGTAAAAGCAATTATTAGACATATTGACAACTTAAGCTGAAAAGCAAAACTTGAAACTCCTCAAAGAAACTTAGTTTGCAGGACTACAATGTGTCAAATTAGCTGGTTCCTTCTACTATAAGCATTAGTTTTCTTTTTTATTTTGTTATATAACACAATTTCCATCGATATATCTACTTGAAAAATACTGTACACTAGGCTTACTAATCCACGGATAAAATTCTGCAGGACAAAGGCTCAAATGTTGAAGCTTACGCTGCAGAAACTCTTGATCCTTCGTTTTGCTGGAAG</genome_strand>
        <mrna_strand>ATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCAC....................................................................TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG..............................................................................................GAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATG..........................................................................................................................................................................................................................................................................................................................................GGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTC..............................................................................................GCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAA..................................................................................................................................................................GATGATTGCACCTCCTTTCAAGAACTTTGAAGGTCTTATATCTACTGTAGCTGTTTCT.......................................................................................................................................................................................................................................GACAAAGGCTCAAATGTTGAAGCTTACGCTGCAGAAACTCTTGATCCTTCGTTTTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546609" ref_strand="+" ref_description="SGN-E546609 [TUS-70-B1](-)">
      <seq>actggtgaagatgcaccccaaagcaatgtaagcaggagttgcaggaataatcgtctctaaccatggagctcggcagctggattacactccagctactatttctgttcttgaagaggtggtccatgatgttcaaggtgaagttccagttcttttcgatgggggaattaggcgaggaactgacatattcaaggcgttagcactaggcgcaaaagctgttctgattggtcgaccagtcatctatggcctagctgctaagggggagaccggggttaaacaagttatagaaatgctcaagaatgaattggagcagaccatggctcttgctggctgccgcactgtggatgacattaccagaagccatgttaatacagagaccgaaaggatcgtatgtaggatgtagtttaatcctatgttcctctaaataaacggcttattagcgctaaactctataatcatgtcacgtcttgctttctaataatcctcatgtgtagtagcatttctgctcctctccaataactaaatccttgtataggattgtgataatttccttatggtaactgcagtggcctagccacatacaataaaggttcatccgttgaacacctttaaaacaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="48821" stop="50185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48962" g_stop="48974" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48975" i_stop="49117" i_length="143">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49118" g_stop="49218" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="115" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49219" i_stop="49308" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49309" g_stop="49413" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="220" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49414" i_stop="49497" i_length="84">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49498" g_stop="49892" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="616" r_length="396" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E546609" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48962" e_stop="48974"/>
          <exon e_start="49118" e_stop="49218"/>
          <exon e_start="49309" e_stop="49413"/>
          <exon e_start="49498" e_stop="49892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTGAAGATGGTAATAATTTTACCTTATGTCAACAGAAACTCTAATCAGCTCTATATGATTTGACAAATATACACTATAAACTTGATTCTGCAACTAAGTCTCACCAATTGAGCATTTCTTCCAAAGAATTTTTTTCATACAATTCTTTGCAGCA-ACCAAAGCAATTGAAGCAGGAGTTGCAGGAATAATTGTCTCTAACCATGGAGCTCGGCAGCTGGATTACACTCCAGCTACTATTTCTGCTCTTGAAGAGGTGATTTTCTTCCTTACATGTTTGATGTCCTCTTTTTAGCTAGTGTATTGGCTTCCATATATTCCTTCCTGAATGTCCAAATGGTTTCAGGTGGTCCATGCTGTTCAAGTTAAAGTTCCAGTTCTTTTCGATGGAGGAATTAGGCGAGGAACTGACATATTCAAGGCGTTAGCACTAGGCGCTAAAGCTGTTCTGGTGAACTTAATGATTTACAGAAATGTATTTAGCTTATATATGCTAAGAGTGTATTGAAATTAACTTAATGTTTAAACTCTACAGATTGGTCGACCAGTCATCTACGGCCTAGCTGCTAAGGGGGAGACCGGGGTAAAACAAGTTATAGAAATGCTCAAGAATGAATTGGAGCAGACCATGGCTCTTGCTGGCTGCCGCACTGTGGATGACATTACCAGAAGCCATGTTAATACAGAGACCGAAAGGATGGAATGTAGGATGTAGTTTAATCCTATGTTCCTCTAAATAAACGGCTTATTAGCGCTAAACTCCATAATCATGTCACGTCTTGCTTTCTAATAATCCTC-TGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</genome_strand>
        <mrna_strand>ACTGGTGAAGATG...............................................................................................................................................CACCCCAAAGCAATGTAAGCAGGAGTTGCAGGAATAATCGTCTCTAACCATGGAGCTCGGCAGCTGGATTACACTCCAGCTACTATTTCTGTTCTTGAAGAG..........................................................................................GTGGTCCATGATGTTCAAGGTGAAGTTCCAGTTCTTTTCGATGGGGGAATTAGGCGAGGAACTGACATATTCAAGGCGTTAGCACTAGGCGCAAAAGCTGTTCTG....................................................................................ATTGGTCGACCAGTCATCTATGGCCTAGCTGCTAAGGGGGAGACCGGGGTTAAACAAGTTATAGAAATGCTCAAGAATGAATTGGAGCAGACCATGGCTCTTGCTGGCTGCCGCACTGTGGATGACATTACCAGAAGCCATGTTAATACAGAGACCGAAAGGATCGTATGTAGGATGTAGTTTAATCCTATGTTCCTCTAAATAAACGGCTTATTAGCGCTAAACTCTATAATCATGTCACGTCTTGCTTTCTAATAATCCTCATGTGTAGTAGCATTTCTGCTCCTCTCCAATAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTAACTGCAGTGGCCTAGCCACATACAATAAAGGTTCATCCGTTGAACACCTTTAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218879" ref_strand="+" ref_description="SGN-E218879 [cLEL-18-G23](-)">
      <seq>ggcaccaggtcacgtcatgctttctaaataatcctctgtgtagtagcatttctgctcttctccactaactaaatccttgtataggaatgtgataatttccttatggttactgcagtggcctagccacataaaataaaggttcatccattgaacacatttcatcgaaaaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49429" stop="128423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49726" g_stop="49892" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49893" i_stop="50101" i_length="209">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50102" g_stop="50118" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="185" r_length="17" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E218879" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49726" e_stop="49892"/>
          <exon e_start="50102" e_stop="50118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCATGTCACGTCTTGCTTTCT-AATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAAGTTAATACTCTATACATAATACATAAATATCAAATTTTAGTGAAATTTATGTCTTCGTAATTAGGTACCTGCACTTTTCGGTGTGAGATACTTCATATTTTAAAATGTCAACTTTATAGATTCTGGACCAACCACTCCCTCGGGTTGACACTGAAGGAAAGTAGAACACTATACACGCAAATGCATTGAAATATATGCACCTATTTTAGATATATATAGAACTCAA</genome_strand>
        <mrna_strand>GGCACCAGGTCACGTCATGCTTTCTAAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGAATGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA.................................................................................................................................................................................................................AAAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223269" ref_strand="+" ref_description="SGN-E223269 [cLEL-14-K13](-)">
      <seq>ggcgccaggtcacgtcttgctttctaataatcctctgtgtagtagcatttctgctcttctccactaactaaatccttgtataggattgtgataatttccttatggttactgcagtggcctagccacataaaataaaggttcatccattgaacacatttcatcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49431" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49726" g_stop="49892" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="168" polyA_stop="184"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E223269" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49726" e_stop="49892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCATGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</genome_strand>
        <mrna_strand>GGCGCCAGGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223045" ref_strand="+" ref_description="SGN-E223045 [cLEL-14-K13](-)">
      <seq>ggcaccaggtcacgtcttgctttctaataatcctctgtgtagtagcatttctgctcttctccactaactaaatccttgtataggattgtgataatttccttatggttactgcagtggcctagccacataaaataaaggttcatccattgaacacatttcatcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49429" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49726" g_stop="49892" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="168" polyA_stop="184"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E223045" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49726" e_stop="49892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCATGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</genome_strand>
        <mrna_strand>GGCACCAGGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234228" ref_strand="+" ref_description="SGN-E234228 [cLEL-8-M20](-)">
      <seq>ggcaccaggtcacgtcttgctttctaataatcctctgtgtagtagcatttctgctcttctccactaactaaatccttgtataggattgtgataatttccttatggttactgcagtggcctagccacataaaataaaggttcatccattgaacacatttcatcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49429" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49726" g_stop="49892" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="168" polyA_stop="184"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E234228" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49726" e_stop="49892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCATGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</genome_strand>
        <mrna_strand>GGCACCAGGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234140" ref_strand="+" ref_description="SGN-E234140 [cLEL-8-M20](-)">
      <seq>gcaccaggtcacgtcttgctttctaataatcctctgtgtagtagcatttctgctcttctccactaactaaatccttgtataggattgtgataatttccttatggttactgcagtggcctagccacataaaataaaggttcatccattgaacacatttcatcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49429" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49727" g_stop="49892" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="167" polyA_stop="183"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E234140" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49727" e_stop="49892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</genome_strand>
        <mrna_strand>GCACCAGGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708119" ref_strand="+" ref_description="SGN-E708119 [FA34DF04]">
      <seq>ctattatcaagattattgtaatcttgaattatgctaatcatttacagtgaactataattctctagttcaatcaactacaactattagctaattaattgagcagtgaactttaactcttctctgttttctatacaacaggctaaaatggcgggtgaaccagttaatgtgtatgaatttcaagagcttgctaggaaagttcttccaaaaatgtactatgacttctttgctggaggagctgaggatgagtacacactcaaagaaaatgtcgaagcatttcatagaatcactattcagccaagaatactagttgatgtgagcagaatagacatgtcaactgtcatacttggtcacaagacatcagctccaattatacttgccccttcttctgcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggtgctgcagcatgtaatgttatcatgggactgtcatttatgtctacctgcacagtggaggaggttgcttcaagctgcaatgctgttcgcttctttcaaatatatgttttcaaaaagagagatgtaacagaatttatggtacgtcgagctgagaagaatgggttcagggcaataattctcactgctgatactccaaggcttggcagaagggaggctgatataaagaataagatgatatcatttcggctgaggaattttgaaggttttatatcaactgatgttgtttctgacaaaggctcaaatcttgcagcatatgctgaagaaactcttgatccgtcgctttgctggaaggatatcgcgtggctaaaatcaattactaagttgccaattttgattaagggtgttctcaatggtgaagatgcaatgaaagcaattgaagcaggagttgtaggaaatatcgtctctaatcatggagctcgacaactagattactctccagctactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53864" stop="50700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53564" g_stop="53426" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53425" i_stop="52921" i_length="505">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52920" g_stop="52772" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="287" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52771" i_stop="52690" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52689" g_stop="52565" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="412" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52564" i_stop="52470" i_length="95">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52469" g_stop="52423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="459" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52422" i_stop="52152" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52151" g_stop="52074" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="537" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52073" i_stop="51982" i_length="92">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51981" g_stop="51857" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="662" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51856" i_stop="51727" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51726" g_stop="51669" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="720" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51668" i_stop="51491" i_length="178">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51490" g_stop="51428" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="783" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51427" i_stop="51242" i_length="186">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51241" g_stop="51172" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="853" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="51171" i_stop="51085" i_length="87">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51084" g_stop="51000" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="938" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E708119" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53564" e_stop="53426"/>
          <exon e_start="52920" e_stop="52772"/>
          <exon e_start="52689" e_stop="52565"/>
          <exon e_start="52469" e_stop="52423"/>
          <exon e_start="52151" e_stop="52074"/>
          <exon e_start="51981" e_stop="51857"/>
          <exon e_start="51726" e_stop="51669"/>
          <exon e_start="51490" e_stop="51428"/>
          <exon e_start="51241" e_stop="51172"/>
          <exon e_start="51084" e_stop="51000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATCAAGATTATTGTAATTATTGAATTATGCTAATCATTTACAGTGAACTATAATTCTCTAGTTCAATCAACTACAACTATTAGCTAATTAATTGAGCAGTGAACTTTAACTCTTCTCTGTTTTCTATACAACAGGTATTCAATGTTTTTACTTCCAAAAATTAATTGAATTTTGATCTAAATTTGTGTTTGCTCCGTGTGTACTTGTTCAACACATAGACCGATTCAAAATTTTAAAGTTTTAAGTTAAGTTGATATATTAAAACTACTAAAGCTACTGGATTCTGCCGAATATATAACATCAACTTTAGATAGATCTGTCCCTACCTGTGGGAAATGAAAATATTTGAATTGAACATAGGAAATTTCGCCTTTACTTTTAATTAATTATATTACTAATATCTCAACATTTGCTTTTACAATTTTCGTGTTTGCTGTTTGTTGATTTTAGTTGCACGGACTCTCCAAACGTGCTTCTGACACTCAGGACAGTTTTGAAGAGTCTAAGCAACATAGCTAAATCCTATAATTGTTTGTTTAGCTGAATTGATTTTTATTCCTAACCAAACTTGAGGGATATATTGAACACAAAATTCAACTATATGAGATGAATTTAACATACGAATGCTCGTGTGTGCAGGCTAAAATGGCGGGTGAACCAGTTAATGTGTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAAATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATGTCGAAGCATTTCATAGAATCACGTAAGTTTGTAATTTCTTGCTCTTGATTAATTTTGGCAAAAAAAAATAAAATGGTAGCAATACTAACATTTCAGAAACTCAGTATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTCATACTTGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTTCTGCGCATCAATTGGCACATCCTGAAGGTTCGGATTAAATCAATTAGTAAAAACTAGTCTGTTAGCTTAAGGTACCCCCACCGCGTACTTCTTACTCTAACAAGCTATTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAAAATATCTGTTTCCAATTCTGGTGTGTGGAATGTTAAGACGATTTCTCAGATAATCATTAACTAATTGATTATTATCTCAAAACTCACTTTCTTTTTTGAAAACTGAAATCAAGAACATTGGTGATTTTCTGAGATAATACTACTAGTTGAGAAATCAACTCATGGATTATTGAAATTGTATGACTTTTTCATCTAAATAAAAGCTTACGTTGTTATTACTTAATTATAATATGTTTCAACAAAGATGTTGAGTTTTCTTGAATATAGGGACTGTCATTTATGTCTACCTGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCAAATATATGTAACTTCTATTATTCCAAACTCTGATCATTGTTATATATATATATATATAGTGTTCTGTTATCAGATAGGTAATTTATTCTTTGTCAATAGGTTTTCAAAAAGAGAGATGTAACAGAATTTATGGTACGTCGAGCTGAGAAGAATGGGTTCAGGGCAATAATTCTCACTGCTGATACTCCAAGGCTTGGCAGAAGGGAGGCTGATATAAAGAATAAGTAAGCTGTATATCTTTTATACTTAAATTCTTTACATACGAATCCGGAATAAGTTGGTTTCACTAATTTAGCTCTTAAAGAATTTCTTTTTAGTAATACTGTGTTAATCTACTAAGAGTGGGAATTGCAGGATGATATCATTTCGGCTGAGGAATTTTGAAGGTTTTATATCAACTGATGTTGTTTCTGTAAGTAAAACCATAAAAATTTCTGCTAATCATCGAAGATAAGGTTGATTTCTTAGATGCGACATTCTGAGATAATAACTATTAGTTGAGTGACCCTAACAAATCCAACTTGTGATAGATATATTAACTTGAAACTAGTGTAGACTATGCTTACTAATCCACTTACAAAACTCTGCAGGACAAAGGCTCAAATCTTGCAGCATATGCTGAAGAAACTCTTGATCCGTCGCTTTGCTGGAAGGTACAAGATTTAAAAGTTAAATGCATCCGTTCCTTATTATATGATGAAATACAATCTTTGATACACGAACTCAAATTTCTCGAGTGTAGACAGTATGTTAAAATATGTGAAATTGCTGATCTACAAATAGAGTTGAAGTCAAATATGATCATTATGTAATCCTCACACTCACTGAAAACTTTGCAGGATATCGCGTGGCTAAAATCAATTACTAAGTTGCCAATTTTGATTAAGGGTGTTCTCAATGGTGAAGATGGTACTAGTATTATCAGTGAACCTTAGCTATTTGCATATAAAACCTCAGATTTCCTACAAGTTGACTGGCATATACTTTTTTTTTCAGCAATGAAAGCAATTGAAGCAGGAGTTGTAGGAATTATCGTCTCTAATCATGGAGCTCGACAACTAGATTACTCTCCAGCTACTAT</genome_strand>
        <mrna_strand>CTATTATCAAGATTATTGTAA-TCTTGAATTATGCTAATCATTTACAGTGAACTATAATTCTCTAGTTCAATCAACTACAACTATTAGCTAATTAATTGAGCAGTGAACTTTAACTCTTCTCTGTTTTCTATACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAATGGCGGGTGAACCAGTTAATGTGTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAAATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATGTCGAAGCATTTCATAGAATCAC..................................................................................TATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTCATACTTGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTTCTGCGCATCAATTGGCACATCCTGAAG...............................................................................................GAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATG...............................................................................................................................................................................................................................................................................GGACTGTCATTTATGTCTACCTGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCAAATATAT............................................................................................GTTTTCAAAAAGAGAGATGTAACAGAATTTATGGTACGTCGAGCTGAGAAGAATGGGTTCAGGGCAATAATTCTCACTGCTGATACTCCAAGGCTTGGCAGAAGGGAGGCTGATATAAAGAATAA..................................................................................................................................GATGATATCATTTCGGCTGAGGAATTTTGAAGGTTTTATATCAACTGATGTTGTTTCT..................................................................................................................................................................................GACAAAGGCTCAAATCTTGCAGCATATGCTGAAGAAACTCTTGATCCGTCGCTTTGCTGGAAG..........................................................................................................................................................................................GATATCGCGTGGCTAAAATCAATTACTAAGTTGCCAATTTTGATTAAGGGTGTTCTCAATGGTGAAGATG.......................................................................................CAATGAAAGCAATTGAAGCAGGAGTTGTAGGAAATATCGTCTCTAATCATGGAGCTCGACAACTAGATTACTCTCCAGCTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582014" ref_strand="+" ref_description="SGN-E582014 [7647]">
      <seq>cgcgggtgaacagttaatgtgaatgaatttcaagagcttgctaggaaagttcttccaaagatgtactatgacttctttgctggaggagctgaggatgagtacacactcaaagaaaatatcgaagcatttcatagaatcactattcagccaagaatactagttgatgtgagcagaatagacatgtcaacttttatactaggtcacaagacatcagctccaattatagttgccccatctgccgcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggtgctcgcagcatgtaatgttatcatgggactgtcatttacgtctacatgcacagtggaggaggttgcttcaagctgcaatgctgttcgcttctttcacaatatatgtttaccaaaggagagatgtaaccagaatttatggtacgtcgagctgagagcaacgggttcaggggctataattctcactgctgatactccaaggcttggcagaaaggaggctgatataaagaataagatgatatcatttcgggtgaggaattttgacaggtcttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53211" stop="51385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52912" g_stop="52772" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52771" i_stop="52690" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52689" g_stop="52565" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="265" r_length="125" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52564" i_stop="52470" i_length="95">
            <donor d_prob="0.794" d_score="0.92"/>
            <acceptor a_prob="0.815" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52469" g_stop="52423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="313" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52422" i_stop="52152" i_length="271">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52151" g_stop="52074" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="392" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52073" i_stop="51982" i_length="92">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51981" g_stop="51857" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="519" r_length="127" r_score="0.904"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51856" i_stop="51727" i_length="130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51726" g_stop="51685" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="562" r_length="43" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E582014" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52912" e_stop="52772"/>
          <exon e_start="52689" e_stop="52565"/>
          <exon e_start="52469" e_stop="52423"/>
          <exon e_start="52151" e_stop="52074"/>
          <exon e_start="51981" e_stop="51857"/>
          <exon e_start="51726" e_stop="51685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGGTGAACCAGTTAATGTGTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAAATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATGTCGAAGCATTTCATAGAATCACGTAAGTTTGTAATTTCTTGCTCTTGATTAATTTTGGCAAAAAAAAATAAAATGGTAGCAATACTAACATTTCAGAAACTCAGTATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTCATACTTGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTTCTGCGCATCAATTGGCACATCCTGAAGGTTCGGATTAAATCAATTAGTAAAAACTAGTCTGTTAGCTTAAGGTACCCCCACCGCGTACTTCTTACTCTAACAAGCTATTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCT-GCAGCATGTAATGTTATCATGGTAAAATATCTGTTTCCAATTCTGGTGTGTGGAATGTTAAGACGATTTCTCAGATAATCATTAACTAATTGATTATTATCTCAAAACTCACTTTCTTTTTTGAAAACTGAAATCAAGAACATTGGTGATTTTCTGAGATAATACTACTAGTTGAGAAATCAACTCATGGATTATTGAAATTGTATGACTTTTTCATCTAAATAAAAGCTTACGTTGTTATTACTTAATTATAATATGTTTCAACAAAGATGTTGAGTTTTCTTGAATATAGGGACTGTCATTTATGTCTACCTGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCA-AATATATGTAACTTCTATTATTCCAAACTCTGATCATTGTTATATATATATATATATAGTGTTCTGTTATCAGATAGGTAATTTATTCTTTGTCAATAGGTTTTCAAAAAGAGAGATGTAA-CAGAATTTATGGTACGTCGAGCTGAGAAGAATGGGTTCA-GGGCAATAATTCTCACTGCTGATACTCCAAGGCTTGGCAGAAGGGAGGCTGATATAAAGAATAAGTAAGCTGTATATCTTTTATACTTAAATTCTTTACATACGAATCCGGAATAAGTTGGTTTCACTAATTTAGCTCTTAAAGAATTTCTTTTTAGTAATACTGTGTTAATCTACTAAGAGTGGGAATTGCAGGATGATATCATTTCGGCTGAGGAATTTTGA-AGGTTTTATATC</genome_strand>
        <mrna_strand>CGCGGGTGAA-CAGTTAATGTGAATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAGATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATATCGAAGCATTTCATAGAATCAC..................................................................................TATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTTTTATACTAGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCATCTGCCGCGCATCAATTGGCACATCCTGAAG...............................................................................................GAGAAGTTGCAACAGCTAGAGGTGCTCGCAGCATGTAATGTTATCATG...............................................................................................................................................................................................................................................................................GGACTGTCATTTACGTCTACATGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCACAATATAT............................................................................................GTTTACCAAAGGAGAGATGTAACCAGAATTTATGGTACGTCGAGCTGAGAGCAACGGGTTCAGGGGCTATAATTCTCACTGCTGATACTCCAAGGCTTGGCAGAAAGGAGGCTGATATAAAGAATAA..................................................................................................................................GATGATATCATTTCGGGTGAGGAATTTTGACAGGTCTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573545" ref_strand="+" ref_description="SGN-E573545 [32872]">
      <seq>cttgaatcatcctaatcatttacagtgaactataattctctagttcaactacagccattagctaattgaacagtgaacttcaactcttctctgttttctatacaacaggctaaaatggcgggtgaaccagttaatgtttatgaatttcaagagcttgctaggaaagttcttccaaagatgtactatgacttctttgctggaggagctgaggatgagtacacactcaaagaaaatatcgaagcatttcatagaatcactattcagccaagaatactagttgatgtgagcagaatagacatgtcaactgttatactcggtcacaagacatcagctccaattatacttgccccttctgctgcgcatcaattggcacatcctgaaggagaagttgcaacagctagaggtgctgcagcatgtaatgttatcatgggactgtcatttatgtctacatgcacagtggaggaggttgcttcaagctgcaatgctgttcgcttctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53840" stop="51781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53541" g_stop="53426" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53425" i_stop="52921" i_length="505">
            <donor d_prob="0.952" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52920" g_stop="52772" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="257" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52771" i_stop="52690" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52689" g_stop="52565" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="382" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52564" i_stop="52470" i_length="95">
            <donor d_prob="0.794" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52469" g_stop="52423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="429" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52422" i_stop="52152" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52151" g_stop="52081" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="500" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E573545" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53541" e_stop="53426"/>
          <exon e_start="52920" e_stop="52772"/>
          <exon e_start="52689" e_stop="52565"/>
          <exon e_start="52469" e_stop="52423"/>
          <exon e_start="52151" e_stop="52081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATTATGCTAATCATTTACAGTGAACTATAATTCTCTAGTTCAATCAACTACAACTATTAGCTAATTAATTGAGCAGTGAACTTTAACTCTTCTCTGTTTTCTATACAACAGGTATTCAATGTTTTTACTTCCAAAAATTAATTGAATTTTGATCTAAATTTGTGTTTGCTCCGTGTGTACTTGTTCAACACATAGACCGATTCAAAATTTTAAAGTTTTAAGTTAAGTTGATATATTAAAACTACTAAAGCTACTGGATTCTGCCGAATATATAACATCAACTTTAGATAGATCTGTCCCTACCTGTGGGAAATGAAAATATTTGAATTGAACATAGGAAATTTCGCCTTTACTTTTAATTAATTATATTACTAATATCTCAACATTTGCTTTTACAATTTTCGTGTTTGCTGTTTGTTGATTTTAGTTGCACGGACTCTCCAAACGTGCTTCTGACACTCAGGACAGTTTTGAAGAGTCTAAGCAACATAGCTAAATCCTATAATTGTTTGTTTAGCTGAATTGATTTTTATTCCTAACCAAACTTGAGGGATATATTGAACACAAAATTCAACTATATGAGATGAATTTAACATACGAATGCTCGTGTGTGCAGGCTAAAATGGCGGGTGAACCAGTTAATGTGTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAAATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATGTCGAAGCATTTCATAGAATCACGTAAGTTTGTAATTTCTTGCTCTTGATTAATTTTGGCAAAAAAAAATAAAATGGTAGCAATACTAACATTTCAGAAACTCAGTATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTCATACTTGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTTCTGCGCATCAATTGGCACATCCTGAAGGTTCGGATTAAATCAATTAGTAAAAACTAGTCTGTTAGCTTAAGGTACCCCCACCGCGTACTTCTTACTCTAACAAGCTATTGTATTTATGCCAGGAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATGGTAAAATATCTGTTTCCAATTCTGGTGTGTGGAATGTTAAGACGATTTCTCAGATAATCATTAACTAATTGATTATTATCTCAAAACTCACTTTCTTTTTTGAAAACTGAAATCAAGAACATTGGTGATTTTCTGAGATAATACTACTAGTTGAGAAATCAACTCATGGATTATTGAAATTGTATGACTTTTTCATCTAAATAAAAGCTTACGTTGTTATTACTTAATTATAATATGTTTCAACAAAGATGTTGAGTTTTCTTGAATATAGGGACTGTCATTTATGTCTACCTGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCA</genome_strand>
        <mrna_strand>CTTGAATCATCCTAATCATTTACAGTGAACTATAATTCTCTAG-T---TCAACTACAGCCATTAGC----TAATTGAACAGTGAACTTCAACTCTTCTCTGTTTTCTATACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAATGGCGGGTGAACCAGTTAATGTTTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAGATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATATCGAAGCATTTCATAGAATCAC..................................................................................TATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTTATACTCGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTGCTGCGCATCAATTGGCACATCCTGAAG...............................................................................................GAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATG...............................................................................................................................................................................................................................................................................GGACTGTCATTTATGTCTACATGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359304" ref_strand="+" ref_description="SGN-E359304 [cLHT-31-K12]">
      <seq>aatcctctctgccctgcactgaggaagttgactgtttgaaatacaacggatggtcccctgcaactttcacggcaccttcctgtaataccatcttcagtcttgatccaattccaatttctcatctgggtgctatagtttcacaaatggtggcttcatctctggcatctccactatgtacatggctcgtagcagcttgcatgtctgtatccagcgaaaaggatcaatttcggaagcctgcttctagctttcagtcttccaagttcatgggtaggagaagaaaagcgattaccaagtgcaaaagtgggagcttgatgaatggttctgtaatgaacacttcttggcatacttgttttggttttgagccctgtgaggagtattataaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctggcaaacccatggctgtggctgtgcaacctgcaatggaagccacgacaacgaagaaacctcttatgaggaacaggagagttgttgtgaccggngtcggtgtagtatcaccaaatggtcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56710" stop="58611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57010" g_stop="57536" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58311" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="626" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E359304" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57010" e_stop="57536"/>
          <exon e_start="58190" e_stop="58311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTCTGCCCTGCACTGAGGAAGTTGACTGTTTGAAATACAACTGATGGTCCCCTGCAACTTTCACGGCACCTTCCTGTAATACCATCTTCAGTCTTGATCCAATTCAGTTTATCATCCAATTTCTCATCTGGGTCACTGTTTTTATGCTATAGTTTCACAAATGGTGGCTTCTTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGAT</genome_strand>
        <mrna_strand>AATCCTCTCTGCCCTGCACTGAGGAAGTTGACTGTTTGAAATACAACGGATGGTCCCCTGCAACTTTCACGGCACCTTCCTGTAATACCATCTTCAGTCTTGAT-C----CA----AT--TCCAATTTCTCATCT-GG-----G------TGCTATAGTTTCACAAATGGTGGCTTCATCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTCGGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTGCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATACTTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAACGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGNGTCGGTGTAGTATCACCAAATGGTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740686" ref_strand="+" ref_description="SGN-E740686 [LC22BH07]">
      <seq>cttatttgactgtttgaaatacaactgatggtcccctgtaactttcacggggccttcctgtaataacatcttcagtcttgatccaattcagtttatcatccaatttctcatctgggtcactgtttttatgctatagtttcacaaatggtggcttcttctctggcatctccactatgtacatggctcgtagcagcttgcatgtctgtatccagcgaaaaggatcaattttcgaagcctgcttctagctttcagtcttccaagttcatgggtaggagaagaaaagcgattaccaagttcaaaagtgggagcttgatgaatggttctgtaatgaacacttcttggcatagttgttttggttttgagccctgtgaggagtattataaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctggcaaacccatggctgtggctgtgcaacctgcaatggaagccacgacaacgaagaaacctcttatgaggaacaggagagttgttgtgaccggggtcggtgtagtatcaccaattggtcatgatccagacatgttttatagtaatcttcttgaaggcatcagtggtataagtcagattgaggctttcgactgttctgaatttcccagtagaattgctggggaaatcaaggaattttcgactaatgggtgggttgcacccaaactttcgaaaagagcagataagttcatgctctatatgcttactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56735" stop="58914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57032" g_stop="57536" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58395" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="711" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58396" i_stop="58514" i_length="119">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58515" g_stop="58614" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="811" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E740686" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57032" e_stop="57536"/>
          <exon e_start="58190" e_stop="58395"/>
          <exon e_start="58515" e_stop="58614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGACTGTTTGAAATACAACTGATGGTCCCCTGCAACTTTCACGGCACCTTCCTGTAATACCATCTTCAGTCTTGATCCAATTCAGTTTATCATCCAATTTCTCATCTGGGTCACTGTTTTTATGCTATAGTTTCACAAATGGTGGCTTCTTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGTGTAATTTTCCATGATTGCTTTAGCACGTCAAACTGTTAATCTATCTTCTACTTTGACTAATATTTTTCACTAACCAAAGTGTCTTTCAAGATGTTTCACAATGGTCTTCCTTGCGACAGAGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTG</genome_strand>
        <mrna_strand>CTTATTTGACTGTTTGAAATACAACTGATGGTCCCCTGTAACTTTCACGGGGCCTTCCTGTAATAACATCTTCAGTCTTGATCCAATTCAGTTTATCATCCAATTTCTCATCTGGGTCACTGTTTTTATGCTATAGTTTCACAAATGGTGGCTTCTTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAGTTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAACGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGT.......................................................................................................................AGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGGTGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTCTATATGCTTACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569283" ref_strand="+" ref_description="SGN-E569283 [13699]">
      <seq>ggtcactgtttttatgctctaatttgactgttttcacaaatggtggcttcttctgtggcctctccactatgtacatggctcgtagcagcttgcatgtctgtatccagcgaaaaggatcaattttggaagcctgcttctaattttcagtcttccaagttgatgggtaggtctggtaggagaagaaaagcgattaccaagtgcaacagtgggagcttgatgaatggttctgtaatgaacagttcttggcatacctgttttggttttgagccctgtgaggagtattataaatccgagggattgtctgcttctttttcgtctttatttgccgaaaatgcgttttctgtatttggatttaagcaggtgccattgaatcgaaggcagaggagaatgagttctgctgctcattctggcaaacccgtggctgtggccatgcaacctgcaatggaagccacggcaaagaaagaaacctcttatgaggaacagaagagttgttgtgaccgggggtcggtgtagtatcaccaatcggtcatgatccagacattgtttacaataatcttcttgaaggcatcagcggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56846" stop="58656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57168" g_stop="57536" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="409" r_length="378" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58356" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="578" r_length="169" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E569283" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57168" e_stop="57536"/>
          <exon e_start="58190" e_stop="58356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAAATGGTGGCTTCTTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCAT--G--GG-----TAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATG-AAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACC-GGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATA</genome_strand>
        <mrna_strand>TTTCACAAATGGTGGCTTCTTCTGTGGCCTCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTGGAAGCCTGCTTCTAATTTTCAGTCTTCCAAGTTGATGGGTAGGTCTGGTAGGAGAAGAAAAGCGATTACCAAGTGCAACAGTGGGAGCTTGATGAATGGTTCTGTAATGAACAGTTCTTGGCATACCTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCCGAGGGATTGTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATGCGTTTTCTGTATTTGGATTTAAGCAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGTTCTGCTGCTCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCGTGGCTGTGGCCATGCAACCTGCAATGGAAGCCACGGCAAAGAAAGAAACCTCTTATGAGGAACAGAAGAGTTGTTGTGACCGGGGGTCGGTGTAGTATCACCAATCGGTCATGATCCAGACATTGTTTACAATAATCTTCTTGAAGGCATCAGCGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369809" ref_strand="+" ref_description="SGN-E369809 [TUS-25-G19]">
      <seq>ttctctggcatctccactatgtacatggctcgtagcagcttgcatgtctgtatccagcgaaaaggatcaattttcgaagcctgcttctagctttcagtcttccaagttcatgggtaggagaagaaaagcgattaccaagttcaaaagtgggagcttgatgaatggttctgtaatgaacacttcttggcataattgttttggttttgagccctgtgaggagtattataaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctggcaaacccatggctgtggctgtgcaacctgcaatggaagccacgacaatgaagaaacctcttatgaggaacaggagagttgttgtgaccggggtcggtgtagtatcaccaattggtcatgatccagacatgttttatagtaatctttcttgaaggcatcagtggtataagtcagattgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56887" stop="58672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57187" g_stop="57536" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58372" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="534" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E369809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57187" e_stop="57536"/>
          <exon e_start="58190" e_stop="58372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATC-TTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTT</genome_strand>
        <mrna_strand>TTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248828" ref_strand="+" ref_description="SGN-E248828 [cLEF-49-G1]">
      <seq>ttctctggcatctccactatgtacatggctcgtagcagcttgcatgtctgtatccagcgaaaaggatcaattttcgaagcctgcttctagctttcagtcttccaagttcatgggtaggagaagaaaagcgattaccaagttcaaaagtgggagcttgatgaatggttctgtaatgaacacttcttggcataattgttttggttttgagccctgtgaggagtattataaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctggcaaacccatggctgtggctgtgcaacctgcaatggaagccacgacaatgaagaaacctcttatgaggaacaggagagttgttgtgaccggggtcggtgtagtatcaccaattggtcatgatccagacatgttttatagtaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56887" stop="58638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57187" g_stop="57536" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58338" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="499" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E248828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57187" e_stop="57536"/>
          <exon e_start="58190" e_stop="58338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTT</genome_strand>
        <mrna_strand>TTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315455" ref_strand="+" ref_description="SGN-E315455 [cTOA-22-H11]">
      <seq>ctgtatccagcgaaaaggacaattttcgaagcctgcttctagctttcagtcttccaagttcatgggtaggagaagaaaagcgattaccaagttcaaaagtgggagcttgatgaatggttctgtaatgaacacttcttggcataattgttttggttttgagccctgtgaggagtattataaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctgacaaacccatggatgtggctgtgcaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56934" stop="58519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57234" g_stop="57536" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58219" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="332" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E315455" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57234" e_stop="57536"/>
          <exon e_start="58190" e_stop="58219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTG</genome_strand>
        <mrna_strand>CTGTATCCAGCGAAAAGGA-CAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACCCATGGATGTGGCTGTGCAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213315" ref_strand="+" ref_description="SGN-E213315 [cLEC-71-N13]">
      <seq>aaatcagacggattctctgcttctttttcgtctttatttgccgaaaatccgttttctgtatttgggtttaaacaggtgccattgaatcgaaggcagaggagaatgagctctgctgctcatcctggcaaacccatggctgtggctgtgcaacctgcaatggaagccacgacaatgaagaaacctcttatgaggaacaggagagttgttgtgaccggggtcggtgtagtatcaccaattggtcatgatccagacatgttttatagtaatcttcttgaaggcatcagtggtataagtcagattgaggctttcgactgttctgaatttcccagtagaattgctggggaaatcaaggaattttcgactaatggatgggttgcacccaaactttcgaaaagagcagataagttcatgctttatatgcttactgctggaaagaaagctttggcagatggtgggatcacagaagacttattgcaggaattagataaggctagatgtggggtccttattggctctgcccttggagggatgaaggtcttccatgatggcattgaggctttacaggtgtcgtacaagaagctgaatcctttctgtgtacctttttgcacatccaatatgggagctgccatgcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57113" stop="59571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57413" g_stop="57536" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58190" g_stop="58395" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="330" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58396" i_stop="58514" i_length="119">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58515" g_stop="58718" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="534" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58719" i_stop="59169" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59170" g_stop="59271" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="636" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E213315" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57413" e_stop="57536"/>
          <exon e_start="58190" e_stop="58395"/>
          <exon e_start="58515" e_stop="58718"/>
          <exon e_start="59170" e_stop="59271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTGGTAATTTTACTTAATCAAAACCTTATTGATATAATCTGATGAACTGTATTTGGTAGCTTATTGTCTAACGACTTTTAGATCGACTTAATCGACCCATTGGATTTTGGGTATATTCTATGTCTTTAGTATGTGACTACGGATGTGATATAGCACAACGACTGAATAATGAATTGTAATACAACTCAAAAACGTTTTCGGGTTTGGTTCTTTTTAATTCATAAGTTGTTTTATCAAATTTATATGTTTGGCTTATTTGCCCAAAGCTTTTTTTTTTTTTTAAAAAAAAAAACTCTGTGTCAATAAATGGTATGGAGGCAGTAAAATTAAACTATATTTCTTCGATTTGAATAGCTAAAGATCTGTGACTGATGCTTTAAATAACAAATATCTCAATCCTCAAAACAACTATATGAGCTTTTGCTAGTTATTTTGGGATTGATGTTTGTGTTTTGTGAGGAAAACGTGAATGAAATTCGTGCACACAGAGAGAACTACCTACTCGAACTTGTAGAGTGTTATCTTTGTTTATACATATTATTCAAGATATGTTTCATGCCTATCAAACATTTCTAGCATATGTCTTCGAAGAATGTTTAAACTGCATGACTCCAACAATGTGATGAACTGTTCATTTTGATTTGATGTACTTCTAGGCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGTGTAATTTTCCATGATTGCTTTAGCACGTCAAACTGTTAATCTATCTTCTACTTTGACTAATATTTTTCACTAACCAAAGTGTCTTTCAAGATGTTTCACAATGGTCTTCCTTGCGACAGAGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAGGTAACAAATGAACTTGCTTAAGATATATGCCTTTTTTTAAACATTTTATGACTGTGGTGTCCGGGCCAGCTTTCGTGCACCTCGACTAAATCACGGAATACCTGACACCTCCCACCACCAACAGGTGCTAGGTTATTCTGTCTACAAGGCTATGACCTATTACGACTAAATGATCATTCCGAGAGCCCTAAAAGAGAAGCTCTTGTAATTCATTGTTCCAAAGAATGCCATCTAGCATAATGATGATATAATTTTGAGAAGAGTTGTTAAACTTGTTAACTGTAAAAATCAAGCAATACTGTTACCATAAAAAGCTAAACAAGTAATGACAAATGAGGTTCCAGTTCATATTGTATTTTCATGATATCAGAGCTGCCACTTACCATTCTATGGCATATTAAATTCCTCTTTTTTCCATCTCCAAATAATTGATTGTTTTCTCTTTGATCAGGTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCA</genome_strand>
        <mrna_strand>AAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGT.......................................................................................................................AGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTTGCACATCCAATATGGGAGCTGCCATGCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205471" ref_strand="+" ref_description="SGN-E205471 [cLEC-28-I17]">
      <seq>gcaatggaagccacgacaatgaagaaacctcttatgaggaacaggagagttgttgtgaccggggtcggtgtagtatcaccaattggtcatgatccagacatgttttatagtaatcttcttgaaggcatcagtggtataagtcagattgaggctttcgactgttctgaatttcccagtagaattgctggggaaatcaaggaattttcgactaatggatgggttgcacccaaactttcgaaaagagcagataagttcatgctttatatgcttactgctggaaagaaagctttggcagatggtgggatcacagaagacttattgcaggaattagataaggctagatgtggggtccttattggctctgcccttggagggatgaaggtcttccatgatggcattgaggctttacaggtgtcgtacaagaagctgaatcctttctgtgtaccttttgcaacatccaatatgggagctgccatgcttgcaatagatttgggttggatgggtccaaactactcaatctccactgcatgtgcaacaagtaacttctgtatattgagtgcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57919" stop="59738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58219" g_stop="58395" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58396" i_stop="58514" i_length="119">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58515" g_stop="58718" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="381" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58719" i_stop="59169" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59170" g_stop="59280" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="492" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59281" i_stop="59365" i_length="85">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59366" g_stop="59438" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="565" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E205471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58219" e_stop="58395"/>
          <exon e_start="58515" e_stop="58718"/>
          <exon e_start="59170" e_stop="59280"/>
          <exon e_start="59366" e_stop="59438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGTGTAATTTTCCATGATTGCTTTAGCACGTCAAACTGTTAATCTATCTTCTACTTTGACTAATATTTTTCACTAACCAAAGTGTCTTTCAAGATGTTTCACAATGGTCTTCCTTGCGACAGAGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAGGTAACAAATGAACTTGCTTAAGATATATGCCTTTTTTTAAACATTTTATGACTGTGGTGTCCGGGCCAGCTTTCGTGCACCTCGACTAAATCACGGAATACCTGACACCTCCCACCACCAACAGGTGCTAGGTTATTCTGTCTACAAGGCTATGACCTATTACGACTAAATGATCATTCCGAGAGCCCTAAAAGAGAAGCTCTTGTAATTCATTGTTCCAAAGAATGCCATCTAGCATAATGATGATATAATTTTGAGAAGAGTTGTTAAACTTGTTAACTGTAAAAATCAAGCAATACTGTTACCATAAAAAGCTAAACAAGTAATGACAAATGAGGTTCCAGTTCATATTGTATTTTCATGATATCAGAGCTGCCACTTACCATTCTATGGCATATTAAATTCCTCTTTTTTCCATCTCCAAATAATTGATTGTTTTCTCTTTGATCAGGTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCAATAGATTTGGTAAGTTACTTATTGGATGAGATCAAAATATGATTGAAAGAACTGTTTCTCCTTATTCATTCAAAGCTGATTGAAACAACTGCAGGGTTGGATGGGTCCAAGCTACTCAATCTCCACTGCATGTGCAACAAGTAACTTCTGTATATTGAGTGCTTCAA</genome_strand>
        <mrna_strand>GCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGT.......................................................................................................................AGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCAATAGATTTG.....................................................................................GGTTGGATGGGTCCAAACTACTCAATCTCCACTGCATGTGCAACAAGTAACTTCTGTATATTGAGTGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247143" ref_strand="+" ref_description="SGN-E247143 [cLEF-46-M8]">
      <seq>ttgcacccaaactttcgaaaagagcagataagttcatgctttatatgcttactgctggaaagaaagctttggcagatggtgggatcacagaagacttattgcaggaattagataaggctagatgtggggtccttattggctctgcccttggagggatgaaggtcttccatgatggcattgaggctttacaggtgtcgtacaagaagctgaatcctttctgtgtaccttttgcaacatccaatatgggagctgccatgcttgcaatagatttgggttggatgggtccaagctactcaatctccactgcatgtgcaacaagtaacttctgtatattgagtgcttcaaatcatataattagaggtgaaacagatatgatgctttgtggggggtcagattcggcaattattcctataggcttgggaggtttcagtgcttgtggagccctgtcacagaggaatagtgatccaacaagggcttcacgtccctgggatatggaccgtgatggatttgtgattggggaaagatccggcgtcttacttttagaagaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="58258" stop="60550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58558" g_stop="58718" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58719" i_stop="59169" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59170" g_stop="59280" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="272" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59281" i_stop="59365" i_length="85">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59366" g_stop="59461" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="368" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59462" i_stop="59561" i_length="100">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59562" g_stop="59607" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="414" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59608" i_stop="59696" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59697" g_stop="59776" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="494" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59777" i_stop="60192" i_length="416">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60193" g_stop="60250" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="552" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E247143" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58558" e_stop="58718"/>
          <exon e_start="59170" e_stop="59280"/>
          <exon e_start="59366" e_stop="59461"/>
          <exon e_start="59562" e_stop="59607"/>
          <exon e_start="59697" e_stop="59776"/>
          <exon e_start="60193" e_stop="60250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAGGTAACAAATGAACTTGCTTAAGATATATGCCTTTTTTTAAACATTTTATGACTGTGGTGTCCGGGCCAGCTTTCGTGCACCTCGACTAAATCACGGAATACCTGACACCTCCCACCACCAACAGGTGCTAGGTTATTCTGTCTACAAGGCTATGACCTATTACGACTAAATGATCATTCCGAGAGCCCTAAAAGAGAAGCTCTTGTAATTCATTGTTCCAAAGAATGCCATCTAGCATAATGATGATATAATTTTGAGAAGAGTTGTTAAACTTGTTAACTGTAAAAATCAAGCAATACTGTTACCATAAAAAGCTAAACAAGTAATGACAAATGAGGTTCCAGTTCATATTGTATTTTCATGATATCAGAGCTGCCACTTACCATTCTATGGCATATTAAATTCCTCTTTTTTCCATCTCCAAATAATTGATTGTTTTCTCTTTGATCAGGTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCAATAGATTTGGTAAGTTACTTATTGGATGAGATCAAAATATGATTGAAAGAACTGTTTCTCCTTATTCATTCAAAGCTGATTGAAACAACTGCAGGGTTGGATGGGTCCAAGCTACTCAATCTCCACTGCATGTGCAACAAGTAACTTCTGTATATTGAGTGCTTCAAATCATATAATTAGAGGTGAAACAGTAAGTGGGTGAATTACTCTTACTCCATTGTTTTCGTATGTAATTTCCAGACCATGTGAAGTATAATGACACTTTGTATATCATAACATGGAAATTTCAGGATATGATGCTTTGTGGGGGGTCAGATTCGGCAATTATTCCTATAGGTTAGTTAAATATGGTAAAACTATCTGGGGAATAATTTAGTTATAATTTATTCTCAAAGTTTCCATCCTTAAATTGTGATCGGTGGCAGGCTTGGGAGGTTTCAGTGCTTGTGGAGCCCTGTCACAGAGGAATAGTGATCCAACAAGGGCTTCACGTCCCTGGGATATGGTATTGCAATCAAATTTCTCTATTTCTCTGCTGTTTCAAGTTTCAATCAACTGTTGACGAAAATTCTGCTTTTTGATGCATAAATTAGATTTCTTGATGTATTTTGAAATTATCAGCATAAGTGTCATTATGTGAACGATTAAGCATGGACTTCAGCGCTGTTTTTCTAAAAATGAGTTTCTTGAATATGTACATGTACAGTTTGTTGTGACTTCCTACACATGTAAATATTTTACTTTAAATAGGAAAAGAAAAGAGACTATCTTCGAATTGTGAGTCATGTTTGCTATTACTTTGTTATTTCCCTTTTGGAATTTCTTACTGGTTAGTAGCTTGGGAACCATTTTCTTTGTTTTGCTCTTGAAAGATCCCTGCTACTGTTTACTGAAGCTGCATTTGTTTTCTTGATGGAGCAGGACCGTGATGGATTTGTGATTGGGGAAGGATCCGGCGTCTTACTTTTAGAAGAACTTG</genome_strand>
        <mrna_strand>TTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCAATAGATTTG.....................................................................................GGTTGGATGGGTCCAAGCTACTCAATCTCCACTGCATGTGCAACAAGTAACTTCTGTATATTGAGTGCTTCAAATCATATAATTAGAGGTGAAACA....................................................................................................GATATGATGCTTTGTGGGGGGTCAGATTCGGCAATTATTCCTATAG.........................................................................................GCTTGGGAGGTTTCAGTGCTTGTGGAGCCCTGTCACAGAGGAATAGTGATCCAACAAGGGCTTCACGTCCCTGGGATATG................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTGATGGATTTGTGATTGGGGAAAGATCCGGCGTCTTACTTTTAGAAGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257394" ref_strand="-" ref_description="SGN-E257394 [cLEG-45-G8](-)">
      <seq>cttcctataggcttgggaggtttcagtgcttgtggagccctgtcacagaggaatagtgatccaacaagggcttcacgtccctgggatatggaccgtgatggatttgtgattggggaaggatccggcgtcttacttttagaagaacttgaacatgcaaagacgagaaaggctaaaatatatgctgagtttttgggtggaagcttcacttctgatgcttatcacatgatagagccacatccagaaggaagtggagttgttctctgcatagaaaaggccttggctcaatctggggtgaaacgtgaagatgtcaactatataaatgctcatgctgcatcaacgccagccggtgacctgaacgaatatcaggctattctgcattgctttgggaagaaccctgaacttaaaataaattcaacaaagtccatgactggtcatctccttggggctgctggtgctgtggaagccatcgcaacagtcaaggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggctttggangacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59395" stop="62702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59598" g_stop="59607" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59608" i_stop="59696" i_length="89">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59697" g_stop="59776" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59777" i_stop="60192" i_length="416">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60193" g_stop="60261" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="159" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60262" i_stop="60374" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60375" g_stop="60459" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="244" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60460" i_stop="60591" i_length="132">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60592" g_stop="60746" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="399" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60853" g_stop="60933" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="480" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="540" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62255" g_stop="62402" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="688" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E257394" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257394" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59598" e_stop="59607"/>
          <exon e_start="59697" e_stop="59776"/>
          <exon e_start="60193" e_stop="60261"/>
          <exon e_start="60375" e_stop="60459"/>
          <exon e_start="60592" e_stop="60746"/>
          <exon e_start="60853" e_stop="60933"/>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTATAGGTTAGTTAAATATGGTAAAACTATCTGGGGAATAATTTAGTTATAATTTATTCTCAAAGTTTCCATCCTTAAATTGTGATCGGTGGCAGGCTTGGGAGGTTTCAGTGCTTGTGGAGCCCTGTCACAGAGGAATAGTGATCCAACAAGGGCTTCACGTCCCTGGGATATGGTATTGCAATCAAATTTCTCTATTTCTCTGCTGTTTCAAGTTTCAATCAACTGTTGACGAAAATTCTGCTTTTTGATGCATAAATTAGATTTCTTGATGTATTTTGAAATTATCAGCATAAGTGTCATTATGTGAACGATTAAGCATGGACTTCAGCGCTGTTTTTCTAAAAATGAGTTTCTTGAATATGTACATGTACAGTTTGTTGTGACTTCCTACACATGTAAATATTTTACTTTAAATAGGAAAAGAAAAGAGACTATCTTCGAATTGTGAGTCATGTTTGCTATTACTTTGTTATTTCCCTTTTGGAATTTCTTACTGGTTAGTAGCTTGGGAACCATTTTCTTTGTTTTGCTCTTGAAAGATCCCTGCTACTGTTTACTGAAGCTGCATTTGTTTTCTTGATGGAGCAGGACCGTGATGGATTTGTGATTGGGGAAGGATCCGGCGTCTTACTTTTAGAAGAACTTGAACATGCAAAGGTATGCTTCCACTTAACCAATATGCATCTGATAATGTGGAGTTACTTTGATCATTCAGAAGGTTTTGTCAATTTGATTGTAGCTGTGTTGTGTTTTTTTCTGATTAACTACAGACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAGGTAATTTCATACATGGAAATTACCATCGTATTGCTGGTATTCCAGCTCAGATTTTATATCGTGTACATAGCCATTCTAAAGCATGGAAGACTTGTATTCCTACTGATTTCTTTTATATGCTTTACAAAATAGGAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAAGTAATGCTCTTGTACGCCTTTATTTTTGTTTTAGAAGATGTCCTCATATAGCTTGTTCTCAGCAACTGCTCTCTAATTCTCTTATAATGAGTTCTTTCTCATTCAGCTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAGGTAATAAAGTTTAAGATCGTTGCATACAAATACCCTATACAAGCTTAATATGGACTTTTATATTCAGAGAGGGATGAAAGGTTTAGATAGAAAATTACAAATTATGTTTTCTACAAGTAGCTGGTGCTGTGGAAGCCATTACAACAGTTAAGAGGTAATGAATATTAAGATAGTTGCATACAAATACCTTGTAAAAGCTTAAGATGAACTTTTAAACCCATAGAGGGATGAAAAGATTTACATAGAAATTTACATAAGTACCAGGTATGTTGTTTCTTTTAATAAGTGAAAGCATCAGGTATGTTTTATGATTGGAAATAAAATTTCAGAAAATATTTATGAATTACCGCAACTAGTTTAGAATCGAGGCATTGTTGTTGTATATTTATAGAGTCGTCAATACTTAGTAAAAGGACAGCTGGCTGTTGTAATGTAACTTCTTCGAATGATGGCTTGCTGCTGGTTTGCTTCATAACATCTTTATTGGGCCTTAATAGGCAACTTTTAGCTGTTGAAGTACGCATTAAGTCATTAGTAATCTATATGTTTTTGAGACAGCACAAGCTAGGTGTACAGATGGAAAGAGAACAACTAGTGTTTTTTTGTCTCGAATTTAAACCTGATATCACATGGTTCTTAACCCACTTCATTGACTGCTAGGCCACACTATGATCTTTTGTGTTTTGCCCATCAGAATAAAAACCTTCTTAGGTAAATAGATTGGTACTGGATGCCCGCAGGGGAAAAAAGCTTTTTAGATTGTCATGCCAAGTATTGAAGCAATCTGCTAGTTCGTTTTAACACGTGGAGAATGAAGTAGTTTCTACTTCTATTGACTTGTAGTTGGTTGACATAAGTTACTGTTTCTGAAGAAGTCTGTATCTGCAGTAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTT</genome_strand>
        <mrna_strand>CTTCCTATAG.........................................................................................GCTTGGGAGGTTTCAGTGCTTGTGGAGCCCTGTCACAGAGGAATAGTGATCCAACAAGGGCTTCACGTCCCTGGGATATG................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTGATGGATTTGTGATTGGGGAAGGATCCGGCGTCTTACTTTTAGAAGAACTTGAACATGCAAAG.................................................................................................................ACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAG....................................................................................................................................GAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAA..........................................................................................................CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGANGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367172" ref_strand="+" ref_description="SGN-E367172 [cLPT-5-L16]">
      <seq>ttgaacatgcaaagacgagaaaggctaaaatatatgctgagtttttgggtggaagcttcacttctgatgcttatcacatgatagaaccacatccagaaggaagtggagttgttctctgcatagaaaaggccttggctcaatctggggtgaaacgtgaagatgtcaactatataaatgctcatgctgcatcaacgccagccggtgacctgaacgaatatcaggccattctgcattgttttgggaagaaccctgaacttaaaataaattcaacaaagtccatgactggtcatctccttggggctgctggtgctgtggaagccattgcaacagtcaaggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggctttggaggacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgtttaaagaatgtaatgttgcgttgattttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60071" stop="62733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60248" g_stop="60261" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60262" i_stop="60374" i_length="113">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60375" g_stop="60459" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="99" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60460" i_stop="60591" i_length="132">
            <donor d_prob="0.805" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60592" g_stop="60746" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="254" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60933" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="335" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62255" g_stop="62433" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="574" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E367172" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60248" e_stop="60261"/>
          <exon e_start="60375" e_stop="60459"/>
          <exon e_start="60592" e_stop="60746"/>
          <exon e_start="60853" e_stop="60933"/>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACATGCAAAGGTATGCTTCCACTTAACCAATATGCATCTGATAATGTGGAGTTACTTTGATCATTCAGAAGGTTTTGTCAATTTGATTGTAGCTGTGTTGTGTTTTTTTCTGATTAACTACAGACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAGGTAATTTCATACATGGAAATTACCATCGTATTGCTGGTATTCCAGCTCAGATTTTATATCGTGTACATAGCCATTCTAAAGCATGGAAGACTTGTATTCCTACTGATTTCTTTTATATGCTTTACAAAATAGGAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAAGTAATGCTCTTGTACGCCTTTATTTTTGTTTTAGAAGATGTCCTCATATAGCTTGTTCTCAGCAACTGCTCTCTAATTCTCTTATAATGAGTTCTTTCTCATTCAGCTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAGGTAATAAAGTTTAAGATCGTTGCATACAAATACCCTATACAAGCTTAATATGGACTTTTATATTCAGAGAGGGATGAAAGGTTTAGATAGAAAATTACAAATTATGTTTTCTACAAGTAGCTGGTGCTGTGGAAGCCATTACAACAGTTAAGAGGTAATGAATATTAAGATAGTTGCATACAAATACCTTGTAAAAGCTTAAGATGAACTTTTAAACCCATAGAGGGATGAAAAGATTTACATAGAAATTTACATAAGTACCAGGTATGTTGTTTCTTTTAATAAGTGAAAGCATCAGGTATGTTTTATGATTGGAAATAAAATTTCAGAAAATATTTATGAATTACCGCAACTAGTTTAGAATCGAGGCATTGTTGTTGTATATTTATAGAGTCGTCAATACTTAGTAAAAGGACAGCTGGCTGTTGTAATGTAACTTCTTCGAATGATGGCTTGCTGCTGGTTTGCTTCATAACATCTTTATTGGGCCTTAATAGGCAACTTTTAGCTGTTGAAGTACGCATTAAGTCATTAGTAATCTATATGTTTTTGAGACAGCACAAGCTAGGTGTACAGATGGAAAGAGAACAACTAGTGTTTTTTTGTCTCGAATTTAAACCTGATATCACATGGTTCTTAACCCACTTCATTGACTGCTAGGCCACACTATGATCTTTTGTGTTTTGCCCATCAGAATAAAAACCTTCTTAGGTAAATAGATTGGTACTGGATGCCCGCAGGGGAAAAAAGCTTTTTAGATTGTCATGCCAAGTATTGAAGCAATCTGCTAGTTCGTTTTAACACGTGGAGAATGAAGTAGTTTCTACTTCTATTGACTTGTAGTTGGTTGACATAAGTTACTGTTTCTGAAGAAGTCTGTATCTGCAGTAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCA</genome_strand>
        <mrna_strand>TTGAACATGCAAAG.................................................................................................................ACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAACCACATCCAGAAG....................................................................................................................................GAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCCATTCTGCATTGTTTTGGGAAGAACCCTGAA..........................................................................................................CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATTGCAACAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGCGTTGATTTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262874" ref_strand="-" ref_description="SGN-E262874 [cLEG-59-M10]">
      <seq>ggggtgaaacgtgaagatgtcagctatataaatgctcatgctgcatcaacgccagccggtgacctgaacgaatatcaggctattctgcattgctttgggaagaaccctgaacttaaaataaattcaacaaagtccatgactggtcatctccttggggctgctggtgctgtggaagccatcgcaacagtcaaggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggctcggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggttttggaggacacaactcgtctattctatttgcgccttataagaatgtgtaattcaatccttgcacatatcatgtttaaagaatgtaatgtcgtgttgattttcatcaagttgcccttgaaagattccagcatgccatcgaaagctagaacatgaactaaacatctttactagttcatcaaaaaggaaagttggcaccggagatcacgagtgtgtgaagtcattttcctaactgtactacctttttaactactatagatattttgaaattgggttcatctttctattagttgttcttaggtatgaactgtagcagccaatacataattcatttcacatctgcttggaaatgagaaatatgtttttttctttgtgatatcctattgttgtatttgctatggctataaaaaaaaaaaaaaaaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60336" stop="63035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60636" g_stop="60746" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60853" g_stop="60933" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="192" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="252" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62255" g_stop="62735" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="733" r_length="481" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="745"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E262874" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262874" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60636" e_stop="60746"/>
          <exon e_start="60853" e_stop="60933"/>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAAGTAATGCTCTTGTACGCCTTTATTTTTGTTTTAGAAGATGTCCTCATATAGCTTGTTCTCAGCAACTGCTCTCTAATTCTCTTATAATGAGTTCTTTCTCATTCAGCTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAGGTAATAAAGTTTAAGATCGTTGCATACAAATACCCTATACAAGCTTAATATGGACTTTTATATTCAGAGAGGGATGAAAGGTTTAGATAGAAAATTACAAATTATGTTTTCTACAAGTAGCTGGTGCTGTGGAAGCCATTACAACAGTTAAGAGGTAATGAATATTAAGATAGTTGCATACAAATACCTTGTAAAAGCTTAAGATGAACTTTTAAACCCATAGAGGGATGAAAAGATTTACATAGAAATTTACATAAGTACCAGGTATGTTGTTTCTTTTAATAAGTGAAAGCATCAGGTATGTTTTATGATTGGAAATAAAATTTCAGAAAATATTTATGAATTACCGCAACTAGTTTAGAATCGAGGCATTGTTGTTGTATATTTATAGAGTCGTCAATACTTAGTAAAAGGACAGCTGGCTGTTGTAATGTAACTTCTTCGAATGATGGCTTGCTGCTGGTTTGCTTCATAACATCTTTATTGGGCCTTAATAGGCAACTTTTAGCTGTTGAAGTACGCATTAAGTCATTAGTAATCTATATGTTTTTGAGACAGCACAAGCTAGGTGTACAGATGGAAAGAGAACAACTAGTGTTTTTTTGTCTCGAATTTAAACCTGATATCACATGGTTCTTAACCCACTTCATTGACTGCTAGGCCACACTATGATCTTTTGTGTTTTGCCCATCAGAATAAAAACCTTCTTAGGTAAATAGATTGGTACTGGATGCCCGCAGGGGAAAAAAGCTTTTTAGATTGTCATGCCAAGTATTGAAGCAATCTGCTAGTTCGTTTTAACACGTGGAGAATGAAGTAGTTTCTACTTCTATTGACTTGTAGTTGGTTGACATAAGTTACTGTTTCTGAAGAAGTCTGTATCTGCAGTAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAA</genome_strand>
        <mrna_strand>GGGGTGAAACGTGAAGATGTCAGCTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAA..........................................................................................................CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTCG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGTTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTGTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTCGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCATCGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGTTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATTTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATCCTATTGTTGTATTTGCTATGGCTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322040" ref_strand="-" ref_description="SGN-E322040 [cTOB-29-P18]">
      <seq>ctgctggtgctgtggaagccatcgcaacagtcaaggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggctttggaggacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgtttaaagaatgtaatgttgtgttgattttcatcaagttgcccttgaaagattccagcatgccaacgaaagctagaacatgaactaaacatctttactagttcatcaaaaaggaaagctggcaccggagatcacgagtgtgtgaagtcattttcctaactgtactacctttttaactactatagatattttgaaattgggttcatctttctattagttgttcttaggtatgaactgtagcagccaatacataattcatctcacatctgcttggaaatgagaaatatgtttttttctttgtgatatactattgttgtatttgctatggctataaaaaagtgatgtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60753" stop="63046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60899" g_stop="60933" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="95" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62255" g_stop="62746" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="587" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E322040" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322040" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60899" e_stop="60933"/>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAGGTAATAAAGTTTAAGATCGTTGCATACAAATACCCTATACAAGCTTAATATGGACTTTTATATTCAGAGAGGGATGAAAGGTTTAGATAGAAAATTACAAATTATGTTTTCTACAAGTAGCTGGTGCTGTGGAAGCCATTACAACAGTTAAGAGGTAATGAATATTAAGATAGTTGCATACAAATACCTTGTAAAAGCTTAAGATGAACTTTTAAACCCATAGAGGGATGAAAAGATTTACATAGAAATTTACATAAGTACCAGGTATGTTGTTTCTTTTAATAAGTGAAAGCATCAGGTATGTTTTATGATTGGAAATAAAATTTCAGAAAATATTTATGAATTACCGCAACTAGTTTAGAATCGAGGCATTGTTGTTGTATATTTATAGAGTCGTCAATACTTAGTAAAAGGACAGCTGGCTGTTGTAATGTAACTTCTTCGAATGATGGCTTGCTGCTGGTTTGCTTCATAACATCTTTATTGGGCCTTAATAGGCAACTTTTAGCTGTTGAAGTACGCATTAAGTCATTAGTAATCTATATGTTTTTGAGACAGCACAAGCTAGGTGTACAGATGGAAAGAGAACAACTAGTGTTTTTTTGTCTCGAATTTAAACCTGATATCACATGGTTCTTAACCCACTTCATTGACTGCTAGGCCACACTATGATCTTTTGTGTTTTGCCCATCAGAATAAAAACCTTCTTAGGTAAATAGATTGGTACTGGATGCCCGCAGGGGAAAAAAGCTTTTTAGATTGTCATGCCAAGTATTGAAGCAATCTGCTAGTTCGTTTTAACACGTGGAGAATGAAGTAGTTTCTACTTCTATTGACTTGTAGTTGGTTGACATAAGTTACTGTTTCTGAAGAAGTCTGTATCTGCAGTAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAAGTGATGTCCAT</genome_strand>
        <mrna_strand>CTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAAGTGATGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252509" ref_strand="+" ref_description="SGN-E252509 [cLEG-20-M12]">
      <seq>ctgcaggcaaagccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggctaggatatgaatgtgctggtgggctctaagaaagagcgcttggatatcaaggttgcactctccaactcatttggctttggaggacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgtttaaagaatgtaatgttgtgttgattttcatcaagttgcccttgaaagattccagcatgccaacgaaagctagaacatgaactaaacatctttactagttcatcaaaaaggaaagctggcaccggagatcacgagtgtgtgaagtcattttcctaactgtactacctttttaactactatagatattttgaaattgggttcatctttctattagttgttcttaggtatgaactgtagcagccaatacataattcatctcacatctgcttggaaatgagaaatatgtttttttctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="61750" stop="62999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="71" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62255" g_stop="62699" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="516" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E252509" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTG</genome_strand>
        <mrna_strand>GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTAG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAAGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286290" ref_strand="-" ref_description="SGN-E286290 [cLES-11-J6]">
      <seq>tacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggctttggaggacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgtttaaagaatgtaatgttgtgttgattttcatcaagttgcccttgaaagattccagcatgccaacgaaagctagaacatgaactaaacatctttactagttcatcaaaaaggaaagctggcaccggagatcacgagtgtgtgaagtcattttcctaactgtactacctttttaactactatagatattttgaaattgggttcatctttctattagttgttcttaggtatgaactgtagcagccaatacataattcatctcacatctgcttggaaatgagaaatatgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="61756" stop="62992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62056" g_stop="62111" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62255" g_stop="62692" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="494" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E286290" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286290" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62056" e_stop="62111"/>
          <exon e_start="62255" e_stop="62692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTT</genome_strand>
        <mrna_strand>TACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257393" ref_strand="-" ref_description="SGN-E257393 [cLEG-45-G8]">
      <seq>tataagaatgtntaattcaatccttgcacatatcatgtttaaagaatgtaatgttgtgttgattttcatcaagttgcccttgaaagattccagcatgccaacgaaagctagaacatgaactaaacatctttactagttcatcaaaaaggaaagctggcaccggagatcacgagtgtgtgaagtcattttcctaactgtactacctttttaactactatagatattttgaaattgggttcatctttctattagttgttcttaggtatgaactgtagcagccaatacataattcatctcacatctgcttggaaatgagaaatatgtttttttctttgtgatatactattgttgtatttgctatggctataaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="62063" stop="63035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62363" g_stop="62735" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="385"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E257393" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257393" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62363" e_stop="62735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAA</genome_strand>
        <mrna_strand>TATAAGAATGTNTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392088" ref_strand="+" ref_description="SGN-E392088 [TUS-24-B18](-)">
      <seq>caggtcagtcaaatttccagccgtttgacatttgaatcccggatatatgctgataaagcaaaagaattaaattgtcaggctttgatttgaaaatgggctcctgttgttattgtgcttggagttgtcattttttttttttggttcagaacaaaaatttggggatgcttccatacagatgcagctcagggaggacaatactgtcaaaagttttattcatatttgtccccatcagactttgcacaacccagagaaccccctcccattacagttatccagcatgggttgtgccatatcagttttatagtgtaaaagaggaaaggaaccgggaggaattatgtcccttaaccttgggaaattacattaattttggcttttttttatatattgttttgttagtttaggttcaaaattccaacaagtagttcattttagtttcagttatgaaaataatttatttcagaatttacagcaaatataaacaatccttcagattgttatgcacgggagtttggtgctttgtttaccaattttgcaaaaagaaaaatacaaaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74833" stop="73411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74534" g_stop="74457" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74163" g_stop="73715" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="527" r_length="449" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="544"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E392088" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74534" e_stop="74457"/>
          <exon e_start="74163" e_stop="73715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTTATGCACGGGAGTTTGGTGCTTTGTTTACCAA</genome_strand>
        <mrna_strand>CAGGTCAGTCAAATTTCCAGCCGTTTGACATTTGAATCCCGGATATATGCTGATAAAGCAAAAGAATTAAATTGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTTGAAAATGGGCTCCTGTTGTTATTGTGCTTGGAGTTGTCATTTTTTTTTTTTGGTTCAGAACAAAAATTTGGGGATGCTTCCATACAGATGCAGCTCAGGGAGGACAATACTGTCAAAAGTTTTATTCATATTTGTCCCCATCAGACTTTGCACAACCCAGAGAACCCCCTCCCATTACAGTTATCCAGCATGGGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGGGAGGAATTATGTCCCTTAACCTTGGGAAATTACATTAATTTTGGCTTTTTTTTATATATTGTTTTGTTAGTTTAGGTTCAAAATTCCAACAAGTAGTTCATTTTAGTTTCAGTTATGAAAATAATTTATTTCAGAATTTACAGCAAATATAAACAATCCTTCAGATTGTTATGCACGGGAGTTTGGTGCTTTGTTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229076" ref_strand="+" ref_description="SGN-E229076 [cLEL-29-K4](-)">
      <seq>agttgtcattctctttttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgcacaacccagagaaccacctcacattacagttatccagcatgtgttgtgccatatcagttttatagtgtaaaagaggaaaggaaccgcgatgaattatgtcccttaaccttgagaaattacattaattttggctctcttttatatattgtcttgttagtttagcttcaaaactccaacaagtagctcattgtagtttcagctatgaaactaacttatttcagaatatacagcaaatataaacaatccttcagactgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74422" stop="73445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74122" g_stop="73746" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="395"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E229076" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74122" e_stop="73746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTT</genome_strand>
        <mrna_strand>AGTTGTCATTCTCTTTTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421381" ref_strand="-" ref_description="SGN-E421381 [STM-32-D20]">
      <seq>tcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaggaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactaggactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgtccaagaagttcttggcgttggtgaaaagttggaccaggtcagtcagatgtctagccgcttgacatctgaatcccggatatatgctgataaagcaaaagatttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggcttagaacaaagatttggtgatgcttccgtacagatgcagcttagtgacgacaataccgtcaaatgcttcttcctgattggcagcatcagactgcacaacccagagaaccacctcacattacagttgtccagctgttgtgccatgtcagttttatagtgtaagagaggaaaggaaccgtgatgaattatgtcccttaaccttgagaaattacattaattttggttctcctttatatattgtcttgttagtttagcttcaaaactcaaagaggtagctcattgtagtttcagctatgaaactaacgaccttcagaatatacagcaaaaaaaaaacaatccttcagactgctaaaaaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76336" stop="73445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76036" g_stop="75881" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="303" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="380" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73749" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="790" r_length="410" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E421381" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76036" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGC-AAATATAAACAATCCTTCAGACT</genome_strand>
        <mrna_strand>TCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAGGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGGACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTCCAAGAAGTTCTTGGCGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCTAGCCGCTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGATTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTTAGAACAAAGATTTGGTGATGCTTCCGTACAGATGCAGCTTAGTGACGACAATACCGTCAAATG-CTTCTTCCTGATTGGCAGCATCAGA--CTGCACAACCCAGAGAACCACCTCACATTACAGTTGTCCAGC---TGTTGTGCCATGTCAGTTTTATAGTGTAAGAGAGGAAAGGAACCGTGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGTTCTCCTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCAAAGAGGTAGCTCATTGTAGTTTCAGCTATGAAACTAACGACCTTCAGAATATACAGCAAAAAAAAAACAATCCTTCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611099" ref_strand="+" ref_description="SGN-E611099 [60846]">
      <seq>gcttggagttgtcattctcttcttctggcttagaacaaagatttggtgattcttccatacagatgcagctcagtgacgacaatactgtcgaatgcttcttcctgtttgtcaccatcagactgtgcacaacccagggaaccacctcacattacagttgtccagcatgtgttgtgacatatcagttttatagtgtaagagaggaaaggaaccgtgatgaattatgtcccttaacctcgagaaattacattaattttggttctcctttatatattgtcttgttagtttagcttcaaaactccaagaggtagctcattgtagtttcagctatgaaactaacgactttcagaatatacagaaaatataaacaatccttcagactgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74428" stop="73445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74128" g_stop="73749" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="397"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E611099" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74128" e_stop="73749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACT</genome_strand>
        <mrna_strand>GCTTGGAGTTGTCATTCTCTTCTTCTGGCTTAGAACAAAGATTTGGTGATTCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCGAATG-CTTCTTCCTGTTTGTCACCATCAGACTGTGCACAACCCAGGGAACCACCTCACATTACAGTTGTCCAGCATGTGTTGTGACATATCAGTTTTATAGTGTAAGAGAGGAAAGGAACCGTGATGAATTATGTCCCTTAACCTCGAGAAATTACATTAATTTTGGTTCTCCTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAAGAGGTAGCTCATTGTAGTTTCAGCTATGAAACTAACGACTTTCAGAATATACAGAAAATATAAACAATCCTTCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251033" ref_strand="-" ref_description="SGN-E251033 [cLEG-17-H15]">
      <seq>ccatgttcattgccctatttgttattccatttatgatcatcttaggtggttattgactagattgtcgaatgtcaattttgcagaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgcacaacccagagaaccacctcacattacagttatccagcatgtgttgtgccatatcagttttatagtgtaaaagaggaaaggaaccgcgatgaattatgtcccttaaccttgagaaattacattaattttggctctcttttatatattgtcttgttagtttagcttcaaaactccaacaagtagctcattgtagtttcagctatgaaactaacttatttcagaatatacagcaaatataaacgaaaaaataaaaaaaaaactcgatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74916" stop="73460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74616" g_stop="74457" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74163" g_stop="73761" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="563" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="580"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E251033" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74616" e_stop="74457"/>
          <exon e_start="74163" e_stop="73761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACA</genome_strand>
        <mrna_strand>CCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392089" ref_strand="+" ref_description="SGN-E392089 [TUS-24-B18]">
      <seq>gaataccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattacatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgcacaacccagagaaccacctcacattacagttatccagcatgtgttgtgccatatcagttttatagtgtaaaagaggaaaggaaccgcgatgaattatgtcccttaaccttgagaaattacattaattttggctctcttttatatattgtcttgttagtttagccttcaaaaactccaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76262" stop="73524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75962" g_stop="75881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="229" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="306" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73824" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="648" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E392089" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75962" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAG-CTTC-AAAACTCCAACAA</genome_strand>
        <mrna_strand>GAATACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTACATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCCTTCAAAAACTCCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611034" ref_strand="+" ref_description="SGN-E611034 [60780]">
      <seq>atgtgatttaccctgttgtaaaagatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgttcaagaagttcttggcgttggtgagaagttggaccaggtcagtcagatgtctagtcgcttgacatctgaatcccggatatatgctgataaagcaaaagatttaaatcgccaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggcttagaacaaagatttggtgattcttccatacagatgcagctcagtgacaaccatactgtcgaatgcttcttcttgtttgtcaccatcagactgtgcacaacccagggaaccacctcacattacagttgtccagcatgtgttgtgacatatcagttttatagtgtaagagaggaaaggaaccgtgatgaattatgtcccttaaccttgagaaattacattaattttggttctcctttatatattgtcttgttagtttagcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76099" stop="73533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75799" g_stop="75629" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="248" r_length="77" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74163" g_stop="73826" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="585" r_length="337" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E611034" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75799" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAAC</genome_strand>
        <mrna_strand>ATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTTCAAGAAGTTCTTGGCGTTGGTGAGAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCTAGTCGCTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGATTTAAATCGCCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTTAGAACAAAGATTTGGTGATTCTTCCATACAGATGCAGCTCAGTGACAACCATACTGTCGAATG-CTTCTTCTTGTTTGTCACCATCAGACTGTGCACAACCCAGGGAACCACCTCACATTACAGTTGTCCAGCATGTGTTGTGACATATCAGTTTTATAGTGTAAGAGAGGAAAGGAACCGTGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGTTCTCCTTTATATATTGTCTTGTTAGTTTAGCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228361" ref_strand="+" ref_description="SGN-E228361 [cLED-3-D11]">
      <seq>aagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgatagaccatatgcttttattaaatttgattcattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttgtaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgacaccatcagactctgcacaacccagagaaccacctcacattacaggtatccagcatgtgttgtgccatatcagatttatagtgtaaaagaggaaaggaaccgcgatgaattatgtcccttaaccttgagaaattacattaattttggctctcttttatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76261" stop="73557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75961" g_stop="75881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="228" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="305" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73857" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="612" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E228361" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75961" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATAT</genome_strand>
        <mrna_strand>AAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGATAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATTCATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTGTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGACACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGGTATCCAGCATGTGTTGTGCCATATCAGATTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615195" ref_strand="+" ref_description="SGN-E615195 [64991]">
      <seq>caagaaacttgcctttcaatacctggaggaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgttcaagaagttcttggcgttggtgagaagttggaccaggtcagtcagatgtctagtcgcttgacatctgaatcccggatatatgctgataaagcaaaagatttaaatcgccaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggcttagaacaaagatttggtgattcttccatacagatgcagctcagtgacaaccatactgtcgaatgcttcttcttgtttgtcaccatcagactgtgcacaacccagggaaccacctcacattacagttgtccagcatgtgttgtgacatatcagttttatagtgtaagagaggaaaggaaccgtgatgaattatgtcccttaaccttgagaaattacattaattttggttctcctttaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76287" stop="73558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75987" g_stop="75881" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="254" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="331" r_length="77" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73863" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="631" r_length="300" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="642"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E615195" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75987" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTT</genome_strand>
        <mrna_strand>CAAGAAACTTGCCTTTCAATACCTGGAGGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTTCAAGAAGTTCTTGGCGTTGGTGAGAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCTAGTCGCTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGATTTAAATCGCCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTTAGAACAAAGATTTGGTGATTCTTCCATACAGATGCAGCTCAGTGACAACCATACTGTCGAATG-CTTCTTCTTGTTTGTCACCATCAGACTGTGCACAACCCAGGGAACCACCTCACATTACAGTTGTCCAGCATGTGTTGTGACATATCAGTTTTATAGTGTAAGAGAGGAAAGGAACCGTGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGTTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231643" ref_strand="+" ref_description="SGN-E231643 [cLED-4-M5]">
      <seq>aagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgcacaacccagagaaccacctcacattacagttatccagcatgtgttgtgccatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76261" stop="73647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75961" g_stop="75881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="228" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="305" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73947" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="522" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E231643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75961" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCA</genome_strand>
        <mrna_strand>AAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709746" ref_strand="+" ref_description="SGN-E709746 [FA53AA06]">
      <seq>cgatactcttaacaagtttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgatgcttcaaggatgtctattgaaactgggccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatatagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78467" stop="73702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78184" g_stop="78103" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="290" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="451" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="598" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="675" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74163" g_stop="74002" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="837" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E709746" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78184" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCA</genome_strand>
        <mrna_strand>CGATACTCTTAACAAGTTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGATGCTTCAAGGATGTCTATTGAAACTGGGCCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATATAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693194" ref_strand="+" ref_description="SGN-E693194 [LH_Ea10K24]">
      <seq>tccatttattcccagctccgattcaaactcttaacaagtttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagctgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtgaaggccttattcaagaacctgtcaatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaacgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaattgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcagatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatattgtcaaatgttttattcatatttgtcaccatcagactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78501" stop="73704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78202" g_stop="78103" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="312" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="473" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="620" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="697" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74163" g_stop="74004" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="857" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E693194" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78202" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC----TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTG</genome_strand>
        <mrna_strand>TCCATTTATTCCCAGCTCCGATTCAAACTCTTAACAAGTTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCTGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTGAAGGCCTTATTCAAGAACCTGTCAATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAACGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAATTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATATTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396078" ref_strand="+" ref_description="SGN-E396078 [TUS-19-A17]">
      <seq>gaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcttcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76262" stop="73797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75962" g_stop="75881" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="229" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="306" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="74097" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="373" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E396078" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75962" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCA</genome_strand>
        <mrna_strand>GAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCTTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214777" ref_strand="+" ref_description="SGN-E214777 [cLEC-79-E12]">
      <seq>tttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77352" stop="73800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77052" g_stop="76909" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="305" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="452" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="529" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74163" g_stop="74100" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="593" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E214777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77052" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGC</genome_strand>
        <mrna_strand>TTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693224" ref_strand="+" ref_description="SGN-E693224 [LH_Ea10M06]">
      <seq>tccatttattcccagctccgattcaaactcttaacaagtttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagctgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtgaaggccttattcaagaacctgtcaatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaacgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaattgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcagatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78501" stop="73815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78202" g_stop="78103" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="312" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="473" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="620" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="697" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74163" g_stop="74115" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="746" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E693224" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78202" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC----TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCA</genome_strand>
        <mrna_strand>TCCATTTATTCCCAGCTCCGATTCAAACTCTTAACAAGTTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCTGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTGAAGGCCTTATTCAAGAACCTGTCAATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAACGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAATTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409133" ref_strand="+" ref_description="SGN-E409133 [PPI-13-O17]">
      <seq>ctttgttcccatcccatttattaccagctccgattcaagctcttaacaatttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtctgcttgcgggaaaatatggtgaagttgactttgattgctcgtgtgactgatggtcttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcaatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaggaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactaggactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgtccaagaagttcttggcgttggtgaaaagttggaccaggtcagtcagatgtctagccgcttgacatctgaatcccggatatatgctgataaagcaaaagatttaaatcgtcaggctttgattcgaaaatgggctcctggtgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78470" stop="73831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78214" g_stop="78103" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="323" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="484" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="631" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="708" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74163" g_stop="74131" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="741" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E409133" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78214" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC---TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATT</genome_strand>
        <mrna_strand>CTTTGTTCCCATCCCATTTATTACCAGCTCCGATTCAAGCTCTTAACAATTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGTGTGACTGATGGTCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCAATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAGGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGGACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTCCAAGAAGTTCTTGGCGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCTAGCCGCTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGATTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGGTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340461" ref_strand="+" ref_description="SGN-E340461 [cTOF-1-I10]">
      <seq>ttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78472" stop="73831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78172" g_stop="78103" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="278" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="439" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="586" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="663" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74163" g_stop="74131" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="696" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E340461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78172" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="74131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATT</genome_strand>
        <mrna_strand>TTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407756" ref_strand="+" ref_description="SGN-E407756 [PPI-8-M16]">
      <seq>ctttgttcccatcccatttattaccagctccgattcaagctcttaacaatttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtctgcttgcgggaaaatatggtgaagttgactttgattgctcgtgtgactgatggtcttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcaatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaggaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactaggactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagataatgactcgaaatgtccaagaagtctttggcgttggtgaaaagttggaccaggtcagtcagatgtctagccgcttgacatctgaatcccgnatatatgctgataaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78470" stop="74173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78214" g_stop="78103" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="323" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="484" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="631" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74473" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="692" r_length="61" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E407756" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78214" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC---TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAA</genome_strand>
        <mrna_strand>CTTTGTTCCCATCCCATTTATTACCAGCTCCGATTCAAGCTCTTAACAATTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGTGTGACTGATGGTCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCAATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAGGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGGACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGATAATGACTCGAAATGTCCAAGAAGTCTTTGGCGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAGATGTCTAGCCGCTTGACATCTGAATCCCGNATATATGCTGATAAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314825" ref_strand="+" ref_description="SGN-E314825 [cTOA-20-B18]">
      <seq>ccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttncagaagttctgggagttggtgaaaagttggacaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78501" stop="74173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78201" g_stop="78103" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="307" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="468" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="614" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74473" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="675" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E314825" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78201" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAA</genome_strand>
        <mrna_strand>CCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTNCAGAAGTTCTGGGAGTTGGTGAAAAGTTGGA-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314613" ref_strand="+" ref_description="SGN-E314613 [cTOA-20-D13]">
      <seq>atgcttgcgggaaaatatggcgaacttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagatggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77412" stop="74173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="76909" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="365" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="512" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74533" g_stop="74473" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="573" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E314613" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAA</genome_strand>
        <mrna_strand>ATGCTTGCGGGAAAATATGGCGAACTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGATGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211360" ref_strand="+" ref_description="SGN-E211360 [cLEC-70-P2]">
      <seq>gttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatggttcagaaagtcttggagttggtgaaaagttggacangtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78510" stop="74176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78210" g_stop="78103" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="316" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="477" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="623" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74476" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="681" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E211360" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78210" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGC</genome_strand>
        <mrna_strand>GTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGGTTCAGAAAGTCTTGGAGTTGGTGAAAAGTTGGA-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ANGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213600" ref_strand="+" ref_description="SGN-E213600 [cLEC-76-G13]">
      <seq>aaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatggntcagaagttcttggagttggtgaaaagtggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78523" stop="74183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78223" g_stop="78103" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="329" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="490" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="636" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74533" g_stop="74483" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="687" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E213600" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78223" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTG</genome_strand>
        <mrna_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGGNTCAGAAGTTCTTGGAGTTGGTGAAAAG-TGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306368" ref_strand="+" ref_description="SGN-E306368 [cLEX-13-H21]">
      <seq>cttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaacaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgttccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagatcttggagttggtgaaaagttggaccgtcgggagacaaaaacagacgagagtggatgctgtggaagattgctgagaagtaaaatggtttaaaagaccacacttcgacgtccttaaaatttgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77283" stop="74799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76983" g_stop="76909" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="236" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="383" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75628" i_stop="75198" i_length="431">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75197" g_stop="75099" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="482" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E306368" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76983" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="75197" e_stop="75099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAA</genome_strand>
        <mrna_strand>CTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAACAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTTCCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGATCTTGGAGTTGGTGAAAAGTTGGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGAGACAAAAACAGACGAGAGTGGATGCTGTGGAAGATTGCTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202636" ref_strand="+" ref_description="SGN-E202636 [cLEC-19-N8]">
      <seq>tttggcatttcaatcattaacgcatccaaagtatgtgaacttccggagtagattactgttgccgtaactacttttttttgtcatgtatgctttctgtaccaccagtaatattgctcttctgtctctatttcaccctcttgagaaagtttactccatgtatatagtattctcttaacccgtgctctcagttatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccgtaagtttctcattctaacattcctcttttgtgaacaatacctcgttcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76527" stop="75275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76227" g_stop="75881" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75575" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="550" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E202636" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76227" e_stop="75881"/>
          <exon e_start="75775" e_stop="75575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTA-ATTACTGTTGCCGTAACTAC-TTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTG</genome_strand>
        <mrna_strand>TTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAGATTACTGTTGCCGTAACTACTTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310987" ref_strand="+" ref_description="SGN-E310987 [cLEZ-17-G1]">
      <seq>agcgatcggcgactggtttccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78452" stop="75323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78152" g_stop="78103" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="258" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="419" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="566" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E310987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78152" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC</genome_strand>
        <mrna_strand>AGCGATCGGCGACTGGTTTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305864" ref_strand="+" ref_description="SGN-E305864 [cLEX-14-N16]">
      <seq>tttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77352" stop="75323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77052" g_stop="76909" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="305" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="452" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E305864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77052" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC</genome_strand>
        <mrna_strand>TTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313971" ref_strand="+" ref_description="SGN-E313971 [cTOA-19-I14]">
      <seq>ttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78509" stop="75345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78209" g_stop="78140" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78139" i_stop="77065" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77064" g_stop="76909" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="226" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="387" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75645" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="518" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E313971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78209" e_stop="78140"/>
          <exon e_start="77064" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTT</genome_strand>
        <mrna_strand>TTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211354" ref_strand="+" ref_description="SGN-E211354 [cLEC-70-N2]">
      <seq>gttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcnaataatgactcgaaatgttcaagaagttcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78510" stop="75348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78210" g_stop="78103" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="316" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="477" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75648" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="605" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E211354" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78210" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGA</genome_strand>
        <mrna_strand>GTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCNAATAATGACTCGAAATGTTCAAGAAGTTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421380" ref_strand="+" ref_description="SGN-E421380 [STM-32-D20]">
      <seq>ctttgttcccatcccatttattaccagctccgattcaagctcttaacaatttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtctgcttgcgggaaaatatggtgaagttgactttgattgctcgtgtgactgatggtcttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcaatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaggaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactangactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcagaatatgactcgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78470" stop="75365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78214" g_stop="78103" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="323" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="484" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75665" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="595" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E421380" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78214" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC---TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATG</genome_strand>
        <mrna_strand>CTTTGTTCCCATCCCATTTATTACCAGCTCCGATTCAAGCTCTTAACAATTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGTGTGACTGATGGTCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCAATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAGGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTANGACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAGAATATGACTCGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247376" ref_strand="+" ref_description="SGN-E247376 [cLEF-46-E18]">
      <seq>aaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78523" stop="75372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78223" g_stop="78103" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="329" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="490" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75672" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="594" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E247376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78223" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACT</genome_strand>
        <mrna_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248643" ref_strand="+" ref_description="SGN-E248643 [cLEF-58-O12]">
      <seq>aaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78523" stop="75372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78223" g_stop="78103" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="329" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="490" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75672" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="594" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E248643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78223" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACT</genome_strand>
        <mrna_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310862" ref_strand="+" ref_description="SGN-E310862 [cLEZ-15-J13]">
      <seq>cagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaacaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtgccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78490" stop="75379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78190" g_stop="78103" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="296" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="457" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75679" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="554" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E310862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78190" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAAT</genome_strand>
        <mrna_strand>CAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAACAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTGCCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277367" ref_strand="+" ref_description="SGN-E277367 [cLER-3-C24]">
      <seq>tatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78505" stop="75573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78205" g_stop="78103" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="311" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75881" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="472" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75775" g_stop="75765" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="483" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E277367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78205" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75881"/>
          <exon e_start="75775" e_stop="75765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATA</genome_strand>
        <mrna_strand>TATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314732" ref_strand="+" ref_description="SGN-E314732 [cTOA-20-C22]">
      <seq>ccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78501" stop="75580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78201" g_stop="78103" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="307" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75885" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="464" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E314732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78201" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAA</genome_strand>
        <mrna_strand>CCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264330" ref_strand="+" ref_description="SGN-E264330 [cLEG-70-H20]">
      <seq>aatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77255" stop="75610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76955" g_stop="76909" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76041" g_stop="75910" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="179" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E264330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76955" e_stop="76909"/>
          <exon e_start="76041" e_stop="75910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGC</genome_strand>
        <mrna_strand>AATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206216" ref_strand="+" ref_description="SGN-E206216 [cLEC-29-F21]">
      <seq>aaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78523" stop="75612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78223" g_stop="78103" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="329" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75912" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="459" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E206216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78223" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACT</genome_strand>
        <mrna_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206711" ref_strand="+" ref_description="SGN-E206711 [cLEC-31-E22]">
      <seq>aaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattgaagggcatgtttgttatctgacaatgtgtgatcgctcttatcccaagaaacttgcctttcaatacctggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78523" stop="75620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78223" g_stop="78103" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="329" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="75920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="451" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E206711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78223" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="75920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAA</genome_strand>
        <mrna_strand>AAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486931" ref_strand="+" ref_description="SGN-E486931 [cSTE-23-N23]">
      <seq>gttcccatcccatttattaccagctccgattcaagctcttaacaatttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgcaagcgtatgatcgatcgctgtctgcttgcgggaaaatatggtgaagttgactttgattgctcgtgtgactgatggtcttcctttagccgaggggctggatgatgggcgtgatgttcaaaatgcagatttctacaaacagcaggccaaggccttattcaagaacctgccaatgcgccaaaatgacgcttcaaggatgcctattgaaactggaccttacgtcttccattatatcattgaagggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78470" stop="75723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78210" g_stop="78103" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="319" r_length="208" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.067" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76041" g_stop="76023" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="338" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E486931" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78210" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
          <exon e_start="76041" e_stop="76023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAAC---TTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCAGTATCCTTATGTTCATGTTATATTTCCAACGTGACTTCACCGGTTTACTTATGGGTAAAATCCCAATAATATATTGTGTTTTGATTTTCTCTCGAAGATGAGAGAATGTGCAACTTCCTTTCTGAGCTTGACAAGTTATTTCTTCTAATAGGGTTTTGCCGGGGTGGGATGGGGGATTCATTTGAAACTTTTAATGAATATTTTGCATTTTTAGTAATCAATTTGCCCCTTCCCTAACTGTTTCAATTAACTTGTACTATTGCCCATGTTTCAATTATATCTTGGTACTGCTTATTGGGGGTATTTTAATTTGAAAACTCTATGAAGTCAATACTTGTTAGAAAAGGAAATATCCTGTTGATTGAATGCTCAGCATTCATAGTCCTTAAAACTTTCCCATTTGGTTTCAATATAACAGACAAGTTGGAGTTTTCTGTTTATTTCAGAAATGATCAGTGTTGCTGGTTTAGTGCTTTAGATGAATGAGATTCCACCTTGGTGTGTCTAAGCTGTTAAATACTCTTGATCCCTTATGCGACATACATTCTCTTGGTTTGTTTAGTATCTCCACTTGATAAGCTTTCACAACTAAAACATTGTACTTCTAGTTTTTTACTGGATTTTGAGTAGCATCGATTTCATCATTATCATGGCTGACTGAATGTGAAATATCAAGGATGATTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCAT</genome_strand>
        <mrna_strand>GTTCCCATCCCATTTATTACCAGCTCCGATTCAAGCTCTTAACAATTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGTGTGACTGATGGTCTTCCTTTAGCCGAGGGGCTGGATGATGGGCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGCCAAGGCCTTATTCAAGAACCTGCCAATGCGCCAAAATGACGCTTCAAGGATGCCTATTGAAACTGGACCTTACGTCTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCATTGAAGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243810" ref_strand="+" ref_description="SGN-E243810 [cLED-35-F14]">
      <seq>aaactcagcaaaacccctctttgttcctatcccatttattcccagctccgattcaaactcttaacttatcaaaggcggtcagcgatcggcgactggattccgagcagtcacgccagcgtatgatcgatcgctgtatgcttgcgggaaaatatggtgaagttgactttgattgctcgcgtgactgatggccttcctttagccgaggggctggatgatggtcgtgatgttcaaaatgcagatttctacaaacagcaggtcaaggccttattcaagaacctgtcgatgcgccaaaatgacgcttcaaggatgtctattgaaactggaccttacgtcttccattatatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78532" stop="76605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78232" g_stop="78103" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77116" g_stop="76909" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="338" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E243810" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78232" e_stop="78103"/>
          <exon e_start="77116" e_stop="76909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCAGCAAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCGGTAATTTTTTATCTATGCTGATAATAACTTCGTGAGCAATCTGTTTATATCATTGTGTTTGTTTGCGTGATTTTGTGTTTATTAGATTTGATTTTAGTCGTTCTTCATTGGAATTGAATGTCGTAGGTTTGAGTTGTTAGGGTTAGAGAATTATTCTGCAAATCAGTTCTGTCGATGTGCCTCTACTGCCTTAAAGTATTCAGGGATTAAACTCTTGTAAAATAACATGAATGCTCCTTGGAGATTATCTATTTTGTTTAAGGAATACGGCTTCTGTTGAATTTTTTTAAAAATGTGTATATTTTGTGGTTTCAATTTGATTGTCTTGTAAGTAAAAGAACTTTTGAATGTACCAAATTATCTGGTGATCTTGTAAGTCTTAAACATGCTACGCTGGAACCTAGAATTAAAGCGTTGCAAAAGAAAAGAAAGAAGGAAAGAGTCATTCTTTCTGGAATAAATTAAAAAGGAAAGTAATTGAGGGAGATTTTTTAAAGCAACTCGAAGCAGAAGCGGAAGGAATTTGCCTAAGTTAGCTAAGAAGAAGATAGAACTTGGGATTTTCTTCTGTGCTTCCAAATGAGCTGCAGATCAATATATATACTCTACTACCTTGCCAAAAGTGTGACTATGCAAATTTGTACATAAAAATAGTTTTACTTAAAAACGTAAGGACTAATCCGTGAAGCTTTTTAAATAATAACTAACTCCCCCTTCAGCCGCTAAGTACTCCTCTTAAAGTGTAATAAACCATCCTGACTGCACAGCGTCTACTTCATCATTTTAGAACACGTCAGCTTTATGTTTATTAGATTGAAAGCAAACAGTCGCACTGACTGGAAGTATAATGCATTAGTTGTTGTCATTTGTGGGAATGTTGTTCATATAGATGATCCTGTTAGAAGTTAGACGGCATGGACAAAGTAGAAAATATAGAAATTTGACTACAAAAAGTTGAATTCTCACCTTTTTGTGTTTCGATGTAGCTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA</genome_strand>
        <mrna_strand>AAACTCAGCAAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCCAGCGTATGATCGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606038" ref_strand="+" ref_description="SGN-E606038 [21973]">
      <seq>ttaagaaagtcaagaatgggcttctctcagggaacatccatctgatgatagcttttatgagaatgagtttttcagtgaacaagttcaagccttgcgcagttcaattccagctcctccagctaacttcaaattgcgtgaagatcaattatcagggagctcaataaaagctccaagatcattcttctccttgtcgacattcagaagcaagggaagtgactcaaagccaaagtgactatccaaagcaatagatagctctttcaaagtataaagttccactaattcttggaattgccttgattgcacacgtaacttcagactatatttcgaagcaagaggtcaaggtagatggcgctactatcatctaaatatgttgtatacttgtacttagtaatcacggggcttctgaagccttgcttgtgcttttagctgtttctagtagttgtcccagaatatatgttgtatattgtcttgagaggacaatagcggaatattaatgtgattttggtagtcatagcattctttcttatgttatttactcttgatttttttggtaaatatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93830" stop="90479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93530" g_stop="93449" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93448" i_stop="92832" i_length="617">
            <donor d_prob="0.903" d_score="0.94"/>
            <acceptor a_prob="0.584" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92831" g_stop="92748" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92747" i_stop="91163" i_length="1585">
            <donor d_prob="0.844" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91162" g_stop="90779" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="561" r_length="394" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E606038" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93530" e_stop="93449"/>
          <exon e_start="92831" e_stop="92748"/>
          <exon e_start="91162" e_stop="90779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAAAGTCAAGAATGGGTTTCTCTCA-GGATCATCAATCTGATGATAGCTTTTATGAGAATGAGTATTTCAGTGAACAAGGTGAATGATGTGTTTCACTCCCTAAACAAACTATACGTGTTTCAATATGGCTGATATTTATTGCTGCGCCCTCAAGAACAATTTTTGATATTCTACTCTGTTTCTCGAGTTTGCATTTCTTATTTTTTAAAATCTTTTTGTACATTAATATCCAGAAAACTTAACTGCTAGCATATGATAGCCGTACAGATCATAGTGCTGTTTTGTCTATCTAGGGGAGATCCAGGGAGGATAACATAATTCTTCTACATAAAAAAGAAAGAATTGGAAATGCTGTTACCTTTCCCAAAAGAAGAAGAAGAAGAAAGAATTAGAAATGTTGGGAAGCAGTGGAGACCCACAATTCTAGCTTTATATCTGTTATTGCCGGTAGTTTTGCAAATGGTCTTTGTGTAGAGAAAGAAGCATACTGAAGGAATGTAGCAATGATGTTTGAAGCTAAGTTCATACCTTAAACTTAGATAACTGGAAATGAGATTGTTTGGGAATTGTTCAGCTTGCGCTCTTGTTGTCACTTTACTTCTGATTCCATCTTGTTTTGTTTGTTGTTCTTCAGTCTTTCAACTTCAGTATAGAAGCTTTTTCTAGTCTCTAACCCAATGCTTCTCTTCTGGCAGTTCAAGCCTTGCGCAGTTCAATTCCAGCACCACCAGCTAACTTCAAATTGCGTGAGGATCAGTTATCAGGGAGCTCAATAAAAGGTGACCAGCTAGTTTAAGAAGTTAGCCTGTCCTATCTTATTGCTTATGTTTTGTGTTTTATGTTTTGTTGCATGATGCAATGTCATCATGTGAAGAAGTTATCTTGCTTGGCTGCAAGTAGAAAAATTAAAGATAAGAAAGTATAGTAAGCCTCTTGTATTGACCTATTCGCAAGTTAGCTCAATAAAATCGTAATCATAAAATGTCTTTTCTAGTTTACGCATTAGGTCACAATCACTTTCACACTGTTTACTAGTTCAATAAAAGGTTTCAATTGGTTTATCAATCTAGGTAACACAAAACATCATTAAAGTCTAAAAGATGAAACAGACAAAAAAACCGACTTAACAACACAAGAACTCCATAACCTTCTTTTTTATGTGGTCTAAAACCGCAAAAATGGACTGACTGAAGACTAACAACAATGCACTAAATAATAAAGACAGGAATACATTATCAAAAAAGAAAAAAGAAAAAAAGAAGACAAGAATAAACCATATTAAAAGACTTGATAGCTGGTAGTTTACTCCAAATACAACTCCATATTCAGGAACTCCAATTATATAATGATTATGAGTTCAAGAACTCTCCTTTCCTTATGGCTCAAGGGCAGCACCACCTTCTCTTCTTTCTTTTTTAACTTTGTCCTACTGCAACTTGATTGCCACCAACTGCTCCAACATGGGTTTATTTGACTGTATTTCTGAGGCAGGTTGCATGATCTTATACCTTAGTATTTGATCTTTTTCTTTCTCATCCAATACTTGTACTTCTTTACGAAGATCTTCAAATGCCCCAAGTACATTTGATTTGCCCACATCAACATGATCATGTTACAATTCAAGAAATTTGTCTGTTACTTTTTCTTCACTTGTGGAGGCATAGTAAGATGATTTTCCACTTGGTGAAAAAAGCATAACATCAACACCTGCTCCTGTCCGAGTTGAAAACTCATTTGCTTTCTTGAACAAACCTTTTTTCCCTTTTTAAGATAGTAAACAAGGGGTGCTTCAGACTCAATCAACTTAATTTCAATCTTTTGCCTACCCTTCCCAGTCTTCTTATCCATTGCAAAAACAAATATTTGAAGAAGAAAATAAGATGTTTTGGCTGAATAAGTCTGAGCAATTTTGAGAGGAATGCTTGTGTAATTTATAGTAGGTGTGCGTGTCTATTTTTCACGTGTATTGCCACATCTATTTAATGTTTTCATATTATGAGTCTATTTGTCACGTGTATTGTCATGTTTATTTATAGTTTTCACATTATGAGTCTATCTGCCACGTATATTGTCACATTCGATTAGTGTTTTCATATTCTGTGAATCTATTTCAAGATAAAAGATTTCTTATTTATTCCACTGTGATTGCAAAGTAATAATGTTGGATTGAACTTAAGATAAATGAAATATAAATTGTCACGTTTATTGAATGTTTTCATATTAGGAGTTATTAGTCATGTGTATTGTCATGTTTACGTAGTGTTTTCATATTATGCAAATCTAATCAGACATTATTAGGATCCAAAACAAAAGATGTCTTCAGTATGCGCTCTTGACTTTTATCTGTTCCTAATTATTTTACAGCTCCAAGATCATTCTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTG---ATCCAAAGC-ATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAGTTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAAGGAGGTCAAGGTAGATGGCGCTACTATCATCTAAAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTGTAGTAGTTGTCCCAGAATATA---TG----TTG---T-AGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTTTCTTATGTTGTTGTTTACTCTTGATTTTTTTGGTAAATATCAG</genome_strand>
        <mrna_strand>TTAAGAAAGTCAAGAATGGGCTTCTCTCAGGGAACATCCATCTGATGATAGCTTTTATGAGAATGAGTTTTTCAGTGAACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCCTTGCGCAGTTCAATTCCAGCTCCTCCAGCTAACTTCAAATTGCGTGAAGATCAATTATCAGGGAGCTCAATAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGATCATTCTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTGACTATCCAAAGCAATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAATTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAA-GAGGTCAAGGTAGATGGCGCTACTATCATCT-AAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTCTAGTAGTTGTCCCAGAATATATGTTGTATATTGTCTTGAGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTTTCTTA---TGTTATTTACTCTTGATTTTTTTGGTAAATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344995" ref_strand="+" ref_description="SGN-E344995 [cTOF-22-F1]">
      <seq>cggagtatcgataaatttccaaagagttctggttcaaagacttcagtaaagaagggtaagaatactgacttcagctctagaggtggtctgacaaagacaagggtttctgctgtatctaagattgtggacgacaatgatgagtatgatgatatggtatttgatcccgaagactccgaaggcatgggccccgatgaagaagaggaagactatgagaccatgacgggtgaaattcatgaaaactttgacaacggggaaccaagattgagccatgattcagagaagttggaaaactctggatcagagaatggtgatgttctaagatcattttctcaagtgaactctgcttcagaagctgtattgccttctatggtctctaacaaattgttatcagggagctcaataaaagctccaagatcatttttctccttgtcgacattcagaagcaagggaagtgactcaaagccaaagtgatccaaagcatagatagctctttcaaagtataaagttccactagttcttggaattgccttgattgcacacgtaacttcagactatatttcgaagcaagaggtcaaggtagatggcgctactatcatctaaaatatgttgtatacttgtacttagtaatcacggggcttctgaagccttgcttgtgcttttagctgtttgtagtagttgtcccagaatatatgttgtagaggacaatagcggaatattaatgtgattttggtagtcatagcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="94622" stop="90522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94322" g_stop="93940" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93939" i_stop="92771" i_length="1169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92770" g_stop="92748" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="406" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92747" i_stop="91163" i_length="1585">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91162" g_stop="90822" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="746" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E344995" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94322" e_stop="93940"/>
          <exon e_start="92770" e_stop="92748"/>
          <exon e_start="91162" e_stop="90822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATCGATAAATTTCCAAAGAGTTCTGGTTCAAAGACTTCAGTAAAGAAGGGTAAGAATACTGACTTCAGCTCTAGAGGTGGTCTGACAAAGACAAGGGTTTCTGCTGTATCTAAGATTGTGGACGACAATGATGAGTATGATGATATGGTATTTGATCCCGAAGACTCCGAAGGCATGGGCCCCGATGAAGAAGAGGAAGACTATGAGACCATGACGGGTGAAATTCATGAAAACTTTGACAACGGGGAACCAAGATTGAGCCATGATTCAGAGAAGTTGGAAAACTCTGGATCAGAGAATGGTGATGTTCTAAGATCATTTTCTCAAGTGAACTCTGCTTCAGAAGCTGTATTGCCTTCTATGGTCTCTAACAAATTGTTATCTGGTGGACTTGTGCAAGATTCACCCGGAGAAAGTCCCGTCTCATGGAATACACATGCTCATCACCCTTTTTCTTATCCTCATGAGATGTCTGATGTTGATGCATCCGTGGACTCTCCTGTGGGAAGTCCTGCATCCTGGAATTCACATTCTCTAAGTCAAACAGATAGTGATGCAGCTAGAATGAGGAAGAAATGGGGAATGGCTCAGAAACCTATGCTTGTGGCAAATTCTTCTCATAATCAATCACGCAAAGATATGGCCAGAGGATTTAAACGGTTTCTGAAATTTGGGAGGAAAAATCGCGGCACAGATACTTTGGTTGACTGGATTTCTGCTACCACTTCTGAAGGAGATGATGATACAGAAGATGGACGTGACCCTTCTAATCGATCTTCAGATGATTTAAGAAAGTCAAGAATGGGTTTCTCTCAGGATCATCAATCTGATGATAGCTTTTATGAGAATGAGTATTTCAGTGAACAAGGTGAATGATGTGTTTCACTCCCTAAACAAACTATACGTGTTTCAATATGGCTGATATTTATTGCTGCGCCCTCAAGAACAATTTTTGATATTCTACTCTGTTTCTCGAGTTTGCATTTCTTATTTTTTAAAATCTTTTTGTACATTAATATCCAGAAAACTTAACTGCTAGCATATGATAGCCGTACAGATCATAGTGCTGTTTTGTCTATCTAGGGGAGATCCAGGGAGGATAACATAATTCTTCTACATAAAAAAGAAAGAATTGGAAATGCTGTTACCTTTCCCAAAAGAAGAAGAAGAAGAAAGAATTAGAAATGTTGGGAAGCAGTGGAGACCCACAATTCTAGCTTTATATCTGTTATTGCCGGTAGTTTTGCAAATGGTCTTTGTGTAGAGAAAGAAGCATACTGAAGGAATGTAGCAATGATGTTTGAAGCTAAGTTCATACCTTAAACTTAGATAACTGGAAATGAGATTGTTTGGGAATTGTTCAGCTTGCGCTCTTGTTGTCACTTTACTTCTGATTCCATCTTGTTTTGTTTGTTGTTCTTCAGTCTTTCAACTTCAGTATAGAAGCTTTTTCTAGTCTCTAACCCAATGCTTCTCTTCTGGCAGTTCAAGCCTTGCGCAGTTCAATTCCAGCACCACCAGCTAACTTCAAATTGCGTGAGGATCAGTTATCAGGGAGCTCAATAAAAGGTGACCAGCTAGTTTAAGAAGTTAGCCTGTCCTATCTTATTGCTTATGTTTTGTGTTTTATGTTTTGTTGCATGATGCAATGTCATCATGTGAAGAAGTTATCTTGCTTGGCTGCAAGTAGAAAAATTAAAGATAAGAAAGTATAGTAAGCCTCTTGTATTGACCTATTCGCAAGTTAGCTCAATAAAATCGTAATCATAAAATGTCTTTTCTAGTTTACGCATTAGGTCACAATCACTTTCACACTGTTTACTAGTTCAATAAAAGGTTTCAATTGGTTTATCAATCTAGGTAACACAAAACATCATTAAAGTCTAAAAGATGAAACAGACAAAAAAACCGACTTAACAACACAAGAACTCCATAACCTTCTTTTTTATGTGGTCTAAAACCGCAAAAATGGACTGACTGAAGACTAACAACAATGCACTAAATAATAAAGACAGGAATACATTATCAAAAAAGAAAAAAGAAAAAAAGAAGACAAGAATAAACCATATTAAAAGACTTGATAGCTGGTAGTTTACTCCAAATACAACTCCATATTCAGGAACTCCAATTATATAATGATTATGAGTTCAAGAACTCTCCTTTCCTTATGGCTCAAGGGCAGCACCACCTTCTCTTCTTTCTTTTTTAACTTTGTCCTACTGCAACTTGATTGCCACCAACTGCTCCAACATGGGTTTATTTGACTGTATTTCTGAGGCAGGTTGCATGATCTTATACCTTAGTATTTGATCTTTTTCTTTCTCATCCAATACTTGTACTTCTTTACGAAGATCTTCAAATGCCCCAAGTACATTTGATTTGCCCACATCAACATGATCATGTTACAATTCAAGAAATTTGTCTGTTACTTTTTCTTCACTTGTGGAGGCATAGTAAGATGATTTTCCACTTGGTGAAAAAAGCATAACATCAACACCTGCTCCTGTCCGAGTTGAAAACTCATTTGCTTTCTTGAACAAACCTTTTTTCCCTTTTTAAGATAGTAAACAAGGGGTGCTTCAGACTCAATCAACTTAATTTCAATCTTTTGCCTACCCTTCCCAGTCTTCTTATCCATTGCAAAAACAAATATTTGAAGAAGAAAATAAGATGTTTTGGCTGAATAAGTCTGAGCAATTTTGAGAGGAATGCTTGTGTAATTTATAGTAGGTGTGCGTGTCTATTTTTCACGTGTATTGCCACATCTATTTAATGTTTTCATATTATGAGTCTATTTGTCACGTGTATTGTCATGTTTATTTATAGTTTTCACATTATGAGTCTATCTGCCACGTATATTGTCACATTCGATTAGTGTTTTCATATTCTGTGAATCTATTTCAAGATAAAAGATTTCTTATTTATTCCACTGTGATTGCAAAGTAATAATGTTGGATTGAACTTAAGATAAATGAAATATAAATTGTCACGTTTATTGAATGTTTTCATATTAGGAGTTATTAGTCATGTGTATTGTCATGTTTACGTAGTGTTTTCATATTATGCAAATCTAATCAGACATTATTAGGATCCAAAACAAAAGATGTCTTCAGTATGCGCTCTTGACTTTTATCTGTTCCTAATTATTTTACAGCTCCAAGATCATTCTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTGATCCAAAGCATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAGTTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAAGGAGGTCAAGGTAGATGGCGCTACTATCATCTAAAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTGTAGTAGTTGTCCCAGAATATATGTTGTAGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTT</genome_strand>
        <mrna_strand>CGGAGTATCGATAAATTTCCAAAGAGTTCTGGTTCAAAGACTTCAGTAAAGAAGGGTAAGAATACTGACTTCAGCTCTAGAGGTGGTCTGACAAAGACAAGGGTTTCTGCTGTATCTAAGATTGTGGACGACAATGATGAGTATGATGATATGGTATTTGATCCCGAAGACTCCGAAGGCATGGGCCCCGATGAAGAAGAGGAAGACTATGAGACCATGACGGGTGAAATTCATGAAAACTTTGACAACGGGGAACCAAGATTGAGCCATGATTCAGAGAAGTTGGAAAACTCTGGATCAGAGAATGGTGATGTTCTAAGATCATTTTCTCAAGTGAACTCTGCTTCAGAAGCTGTATTGCCTTCTATGGTCTCTAACAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAGGGAGCTCAATAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGATCATTTTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTGATCCAAAGCATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAGTTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAA-GAGGTCAAGGTAGATGGCGCTACTATCATCTAAAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTGTAGTAGTTGTCCCAGAATATATGTTGTAGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354207" ref_strand="+" ref_description="SGN-E354207 [cTOS-16-O21]">
      <seq>aaaaaagagaccaaggtttcagaaggaaatgctgaattcaagcgcattaaggcagggaggaattggagaagctagtggaaacaagaattgggggaattcagtgagggagttgacacaggcaatactaaaatttggggaagcatatgaacaaacagagaccgcgaaactgcatcaaatggtggagatggagaagcagagaatgaaatttgcgaaagatatggaattgcagagaatgcagttcttcatgaatacacaattggaaattgcacagcttaagcacaggagaagtgaaaacagcaaccatcacagcaacaaccatgccgccgccgccagcaaccataacaacaacaacaacaacagtgataacagtatttaaggtgtaataaagatccatgaggctcagtatctgacagaggtttgtatttgtaatgtgtttagttttactgctaaacttcttacttcatttgaaaaccaagtggtagaatattatatacttcattaattctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107698" stop="106590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107398" g_stop="106879" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E354207" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107398" e_stop="106879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGACCAAGGTTTCAGAAGGAAATGCTGAATTCAAGCGCATTAAGGCAGGGAGGAATTGGAGAAGCTAGTGGAAACAAGAATTGGGGGAATTCAGTGAGGGAGTTGACACAGGCAATACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCACAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAACCAAGTGGTAGAATATTATATACTTCATTAATTCTCAATTGGAAGTTTA</genome_strand>
        <mrna_strand>AAAAAAGAGACCAAGGTTTCAGAAGGAAATGCTGAATTCAAGCGCATTAAGGCAGGGAGGAATTGGAGAAGCTAGTGGAAACAAGAATTGGGGGAATTCAGTGAGGGAGTTGACACAGGCAATACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCACAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAACCAAGTGGTAGAATATTATATACTTCATTAATTCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395297" ref_strand="-" ref_description="SGN-E395297 [TUS-14-P11]">
      <seq>ctttcccctgtttcaaccggcagctttcctccaggcacatttcaaaaaaagagaccaaggtttcagaaggaaatgctgaattcaagcgccttaaggccgggaggaattggagaagctagtggaaacaagaattgggggaattcagtgagggagttgacacaggcaatactaaaatttggggaagcatatgaacaaacagagaccgcgaaactgcatcaaatggtggagatggagaagcagagaatgaaatttgcgaaagatatggaattgcagagaatgcagtttttcatgaatacccaattggaaattgcacagcttaagcccaggagaagtgaaaacagcaaccatcacagcaacaaccctgccgccgccgccagcaaccctaacaacaacaacaacaacagtgataacagtatttaaggtgtaataaagatccatgaggctcagtatttgacagaggtttgtatttgtaatgtgtttagttttactgctaaactttttacttcatttgaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107742" stop="106624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107442" g_stop="106921" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="539"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E395297" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395297" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107442" e_stop="106921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCTGCTTCAACCGACAGCTTTCCTCCAGGCACATTTCAAAAAAAGAGACCAAGGTTTCAGAAGGAAATGCTGAATTCAAGCGCATTAAGGCAGGGAGGAATTGGAGAAGCTAGTGGAAACAAGAATTGGGGGAATTCAGTGAGGGAGTTGACACAGGCAATACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCACAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAACCAAGTG</genome_strand>
        <mrna_strand>CTTTCCCCTGTTTCAACCGGCAGCTTTCCTCCAGGCACATTTCAAAAAAAGAGACCAAGGTTTCAGAAGGAAATGCTGAATTCAAGCGCCTTAAGGCCGGGAGGAATTGGAGAAGCTAGTGGAAACAAGAATTGGGGGAATTCAGTGAGGGAGTTGACACAGGCAATACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTTTTCATGAATACCCAATTGGAAATTGCACAGCTTAAGCCCAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCCTGCCGCCGCCGCCAGCAACCCTAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATTTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTTTTACTTCATTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201952" ref_strand="-" ref_description="SGN-E201952 [cLEC-7-O19]">
      <seq>tactaaaatttggggaagcatatgaacaaacagagcccgcgaaactgcatcaaatggtggagatggagaagcagagaatgaaatttgcgaaagatatggaattgcaaagaatgcagttcttcatgaatacacaattggaaattgcacagcttaagcccaggagaagtgaaaacagcaaccatctcagcaacaaccatgccgccgccgccagcaaccataacaacaacaacaacaacagtgataacagtatttaaggtgtaataaagatccatgaggctcagtatctgacagaggtttgtatttgtaatgtgtttagttttactgctaaacttcttacttcatttgaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107576" stop="106624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107276" g_stop="106921" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="373"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E201952" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201952" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107276" e_stop="106921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCACAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAACCAAGTG</genome_strand>
        <mrna_strand>TACTAAAATTTGGGGAAGCATATGAACAAACAGAGCCCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAAAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCCCAGGAGAAGTGAAAACAGCAACCATCTCAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379783" ref_strand="+" ref_description="SGN-E379783 [TUS-3-F14]">
      <seq>ttttttttttcaaatgaagtaaaaagtttagcagtaaaactaaacactttacaaatacaaacctctgtcaaatactgagcctcatggatctttattacaccttaaatactgttatcactgttgttgttgttgttgttatggttgctggcggcggcggcatggttgttgctgtgatggttgctgttttcacttctcctgtgcttaagctgtgcaatttccaattgtgtattcatgaaaaactgcattctctgcaattccatatctttcgcaaatttcattctctgcttctccatctccaccatttgatgcagtttcgcggtctctgtttgttcatatgcttccccaaattttagtattgcctgtgtcaactccctcactgaattcccccaattcttgtttccactagcttctccaattcctccctgccttaatgcgcttgaattcagcatttccttctgaaaccttggtctctttttttgaaatgtgcctggaggaaagctgtcggttgaagcaggtgaaaggtccggttcaaactccgattccgatgtgtctgaatccatgtgaggccttttccgggacggttgcttttgtttctgcagttgttgatgttgtcggagctgaggaagggacctgactcccataggaatacccataggcacatgttggttacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106624" stop="107895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106922" g_stop="107595" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E379783" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106922" e_stop="107595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGTTTTCAAATGAAGTAAGAAGTTTAGCAGTAAAACTAAACACATTACAAATACAAACCTCTGTCAGATACTGAGCCTCATGGATCTTTATTACACCTTAAATACTGTTATCACTGTTGTTGTTGTTGTTGTTATGGTTGCTGGCGGCGGCGGCATGGTTGTTGCTGTGATGGTTGCTGTTTTCACTTCTCCTGTGCTTAAGCTGTGCAATTTCCAATTGTGTATTCATGAAGAACTGCATTCTCTGCAATTCCATATCTTTCGCAAATTTCATTCTCTGCTTCTCCATCTCCACCATTTGATGCAGTTTCGCGGTCTCTGTTTGTTCATATGCTTCCCCAAATTTTAGTATTGCCTGTGTCAACTCCCTCACTGAATTCCCCCAATTCTTGTTTCCACTAGCTTCTCCAATTCCTCCCTGCCTTAATGCGCTTGAATTCAGCATTTCCTTCTGAAACCTTGGTCTCTTTTTTTGAAATGTGCCTGGAGGAAAGCTGTCGGTTGAAGCAGGTGAAAGGTCCGGTTCAGACTCCGATTCCGATGTGTCTGAATCCATGTGAGGCCTTTTCCGGGACGGTTGCTTTTGTTTCTGCAGTTGTTGATGTTGTCGGAGCTGAGGAAGGGACCTGACTCCCATAGGAATACCCATAGGCACATGTTGGTTACCTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTCAAATGAAGTAAAAAGTTTAGCAGTAAAACTAAACACTTTACAAATACAAACCTCTGTCAAATACTGAGCCTCATGGATCTTTATTACACCTTAAATACTGTTATCACTGTTGTTGTTGTTGTTGTTATGGTTGCTGGCGGCGGCGGCATGGTTGTTGCTGTGATGGTTGCTGTTTTCACTTCTCCTGTGCTTAAGCTGTGCAATTTCCAATTGTGTATTCATGAAAAACTGCATTCTCTGCAATTCCATATCTTTCGCAAATTTCATTCTCTGCTTCTCCATCTCCACCATTTGATGCAGTTTCGCGGTCTCTGTTTGTTCATATGCTTCCCCAAATTTTAGTATTGCCTGTGTCAACTCCCTCACTGAATTCCCCCAATTCTTGTTTCCACTAGCTTCTCCAATTCCTCCCTGCCTTAATGCGCTTGAATTCAGCATTTCCTTCTGAAACCTTGGTCTCTTTTTTTGAAATGTGCCTGGAGGAAAGCTGTCGGTTGAAGCAGGTGAAAGGTCCGGTTCAAACTCCGATTCCGATGTGTCTGAATCCATGTGAGGCCTTTTCCGGGACGGTTGCTTTTGTTTCTGCAGTTGTTGATGTTGTCGGAGCTGAGGAAGGGACCTGACTCCCATAGGAATACCCATAGGCACATGTTGGTTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208863" ref_strand="+" ref_description="SGN-E208863 [cLEC-51-M6]">
      <seq>ttttttttttcaaatgaagtaagaagtttagcagtaaaactaaacacattacaaatacaaacctctgtcagatactgagcctcatggatctttattacaccttaaatactgttatcactgttgttgttgttgttgttatggttgctggcggcggcggcatggttgttgctgtgatggttgctgttttcacttctcctgtgcttaagctgtgcaatttccaattgtgtattcatgaagaactgcattctctgcaattccatatctttcgcaaatttcattctctgcttctccatctccaccatttgatgcagtttcgcggtctctgtttgttcatatgcttccccaaattttagtattgcctgtgtcaactccctcactgaattcccccaattcttgtttccactagcttctccaattcctccctgccttaatgcgcttgaattcagcatttccttctgaaaccttggtctctttttttgaaatgtgcctggaggaaagctgtcggttgaagcaggtgaaaggtccggttcaaactccgattccgatgtgtctgaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="106624" stop="107779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106922" g_stop="107479" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E208863" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106922" e_stop="107479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGTTTTCAAATGAAGTAAGAAGTTTAGCAGTAAAACTAAACACATTACAAATACAAACCTCTGTCAGATACTGAGCCTCATGGATCTTTATTACACCTTAAATACTGTTATCACTGTTGTTGTTGTTGTTGTTATGGTTGCTGGCGGCGGCGGCATGGTTGTTGCTGTGATGGTTGCTGTTTTCACTTCTCCTGTGCTTAAGCTGTGCAATTTCCAATTGTGTATTCATGAAGAACTGCATTCTCTGCAATTCCATATCTTTCGCAAATTTCATTCTCTGCTTCTCCATCTCCACCATTTGATGCAGTTTCGCGGTCTCTGTTTGTTCATATGCTTCCCCAAATTTTAGTATTGCCTGTGTCAACTCCCTCACTGAATTCCCCCAATTCTTGTTTCCACTAGCTTCTCCAATTCCTCCCTGCCTTAATGCGCTTGAATTCAGCATTTCCTTCTGAAACCTTGGTCTCTTTTTTTGAAATGTGCCTGGAGGAAAGCTGTCGGTTGAAGCAGGTGAAAGGTCCGGTTCAGACTCCGATTCCGATGTGTCTGAATCC</genome_strand>
        <mrna_strand>TTTTTTTTTTCAAATGAAGTAAGAAGTTTAGCAGTAAAACTAAACACATTACAAATACAAACCTCTGTCAGATACTGAGCCTCATGGATCTTTATTACACCTTAAATACTGTTATCACTGTTGTTGTTGTTGTTGTTATGGTTGCTGGCGGCGGCGGCATGGTTGTTGCTGTGATGGTTGCTGTTTTCACTTCTCCTGTGCTTAAGCTGTGCAATTTCCAATTGTGTATTCATGAAGAACTGCATTCTCTGCAATTCCATATCTTTCGCAAATTTCATTCTCTGCTTCTCCATCTCCACCATTTGATGCAGTTTCGCGGTCTCTGTTTGTTCATATGCTTCCCCAAATTTTAGTATTGCCTGTGTCAACTCCCTCACTGAATTCCCCCAATTCTTGTTTCCACTAGCTTCTCCAATTCCTCCCTGCCTTAATGCGCTTGAATTCAGCATTTCCTTCTGAAACCTTGGTCTCTTTTTTTGAAATGTGCCTGGAGGAAAGCTGTCGGTTGAAGCAGGTGAAAGGTCCGGTTCAAACTCCGATTCCGATGTGTCTGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689147" ref_strand="+" ref_description="SGN-E689147 [t3_tus_80_F05]">
      <seq>agtccctcccctcattatataccgccggtcaaccgaaaccctaaccaaaaattccttcttcatcatcttctcactcaactctcggatcggcggcgcaccggaatcggttaaagtttatggagaacgacgaagaaactcagtccggtggttctggatctccggaatcaccacgatctaacgggaggataacggtgacggtagcatcagcgcctcctcagaacaccttgacgttggctctaccgatacagcaatcgagacctgctggagcgtctggcggcggtggaggtagtggtggtggaagggaggattgttggagtgaagaggctacggctgtactgatcgaggcttggggtgagcgttacatggaattgagtagaggtaatttgaagcagaagcactggaaagatgttgctgacattgttagcagtcgggaggattatagaaaaacgcctaaaactgatattcagtgcaaaaatcgaattgatactgtaaagaagaaatacaagctggagaaatctaagatcgctgcgggtcaaggaccaagcaagtggcctttctttgataagctcgatatgttgataggtccgacggctaagatcaatcctaccgtcgctgccggaccgtctaatttgtattcaggtaaccaacatgtgcctatgggtatttcctatgggagtcaggtcccttcctcagctccgacaacatcaacaactgcaaaaacaaaagcaaccgtcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108530" stop="107194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108230" g_stop="107494" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E689147" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108230" e_stop="107494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCCTCCCCTCATTATATACCGCCGGTCAACCGAAACCCTAACCAAAAATTCCTTCTTCATCATCTTCTCACTCAACTCTCGGATCGGCGGCGCACCGGAATCGGTTAAAGTTTATGGAGAACGACGAAGAAACTCAGTCCGGTGGTTCTGGATCTCCGGAATCACCACGATCTAACGGGAGGATAACGGTGACGGTAGCATCAGCGCCTCCTCAGAACACCTTGACGTTGGCTCTACCGATACAGCAATCGAGACCTGCTGGAGCGTCTGGCGGCGGTGGAGGTAGTGGTGGTGGAAGGGAGGATTGTTGGAGTGAAGAGGCTACGGCTGTACTGATCGAGGCTTGGGGTGAGCGTTACATGGAATTGAGTAGAGGTAATTTGAAGCAGAAGCACTGGAAAGATGTTGCTGACATTGTTAGCAGTCGGGAGGATTATAGAAAAACGCCTAAAACTGATATTCAGTGCAAAAATCGAATTGATACTGTAAAGAAGAAATACAAGCTGGAGAAATCTAAGATCGCTGCGGGTCAAGGACCAAGCAAGTGGCCTTTCTTTGATAAGCTCGATATGTTGATAGGTCCGACGGCTAAGATCAATCCTACCGTCGCTGCCGGACCGTCTAATTTGTATTCAGGTAACCAACATGTGCCTATGGGTA-TTCCTATGGGAGTCAGGTCCCTTCCTCAGCTCCGACAACATCAACAACTGCAGAAACAAAAGCAACCGTCCCGG</genome_strand>
        <mrna_strand>AGTCCCTCCCCTCATTATATACCGCCGGTCAACCGAAACCCTAACCAAAAATTCCTTCTTCATCATCTTCTCACTCAACTCTCGGATCGGCGGCGCACCGGAATCGGTTAAAGTTTATGGAGAACGACGAAGAAACTCAGTCCGGTGGTTCTGGATCTCCGGAATCACCACGATCTAACGGGAGGATAACGGTGACGGTAGCATCAGCGCCTCCTCAGAACACCTTGACGTTGGCTCTACCGATACAGCAATCGAGACCTGCTGGAGCGTCTGGCGGCGGTGGAGGTAGTGGTGGTGGAAGGGAGGATTGTTGGAGTGAAGAGGCTACGGCTGTACTGATCGAGGCTTGGGGTGAGCGTTACATGGAATTGAGTAGAGGTAATTTGAAGCAGAAGCACTGGAAAGATGTTGCTGACATTGTTAGCAGTCGGGAGGATTATAGAAAAACGCCTAAAACTGATATTCAGTGCAAAAATCGAATTGATACTGTAAAGAAGAAATACAAGCTGGAGAAATCTAAGATCGCTGCGGGTCAAGGACCAAGCAAGTGGCCTTTCTTTGATAAGCTCGATATGTTGATAGGTCCGACGGCTAAGATCAATCCTACCGTCGCTGCCGGACCGTCTAATTTGTATTCAGGTAACCAACATGTGCCTATGGGTATTTCCTATGGGAGTCAGGTCCCTTCCTCAGCTCCGACAACATCAACAACTGCAAAAACAAAAGCAACCGTCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323417" ref_strand="+" ref_description="SGN-E323417 [cTOC-7-M19]">
      <seq>tccctcccctcattatataccgccgtganaccttgccctaaccaaaaattccttcttcatcatcttctcactcaactctcggatcggcggcgcaccggaatcggttaaagtttatggagaacgacgaagaaactcagtccggtggttctggatctccggaatcaccacgatctaacgggaggataacggtgacggtagcatcagcgcctcctcagaacaccttgacgttggctctaccgatacagcaatcgagacctgctggagcgtctggcggcggtggaggtagtggtggtggaagggaagattgttggagtgaaaaggctaccgctgtactgatcgaggcttggggtgagcgttacatggaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108528" stop="107558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108228" g_stop="107858" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E323417" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108228" e_stop="107858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCCCTCATTATATACCGCCGGTCAACCGAAACCCTAACCAAAAATTCCTTCTTCATCATCTTCTCACTCAACTCTCGGATCGGCGGCGCACCGGAATCGGTTAAAGTTTATGGAGAACGACGAAGAAACTCAGTCCGGTGGTTCTGGATCTCCGGAATCACCACGATCTAACGGGAGGATAACGGTGACGGTAGCATCAGCGCCTCCTCAGAACACCTTGACGTTGGCTCTACCGATACAGCAATCGAGACCTGCTGGAGCGTCTGGCGGCGGTGGAGGTAGTGGTGGTGGAAGGGAGGATTGTTGGAGTGAAGAGGCTACGGCTGTACTGATCGAGGCTTGGGGTGAGCGTTACATGGAATTGAG</genome_strand>
        <mrna_strand>TCCCTCCCCTCATTATATACCGCC-GTGANACCTTGCCCTAACCAAAAATTCCTTCTTCATCATCTTCTCACTCAACTCTCGGATCGGCGGCGCACCGGAATCGGTTAAAGTTTATGGAGAACGACGAAGAAACTCAGTCCGGTGGTTCTGGATCTCCGGAATCACCACGATCTAACGGGAGGATAACGGTGACGGTAGCATCAGCGCCTCCTCAGAACACCTTGACGTTGGCTCTACCGATACAGCAATCGAGACCTGCTGGAGCGTCTGGCGGCGGTGGAGGTAGTGGTGGTGGAAGGGAAGATTGTTGGAGTGAAAAGGCTACCGCTGTACTGATCGAGGCTTGGGGTGAGCGTTACATGGAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746212" ref_strand="+" ref_description="SGN-E746212 [GI|47104842]">
      <seq>ggacgaccacagtcccaaaatccctaaactgaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaggatgagtcaattgcaaatgcaacagcagcaacaacaatttggtttgatgaggcagcaatcaggagggctttatggtcaaatgaattttggggttggaggtacttcgctccagcaacagcagcaacaacaattgcagcaacagcaattgcagcaacaatttcaacaacagcaacagcagcagcagcaacagaaccaacaacagcagcaaataggtggtcagatgggtagcggaaatttagctagggcagctttaatgggacagactggccatctgcccatgttatctggacaagctgctgctgcagcagcggctgttgcccagttcaatttgcaatctcaatttttgaattcgccacggcagaaggcaggtctaatgcaggggaatcaattccatacagggaattcccatggccagtccttacaggcaatgggaatgatgggatctctcaacatgagctctcagctcagggcaaacggtgccctggcatatgcacaaagggtgaatcaaggtcagctgaggcagcagcagttgtcccagcaaaatcctctcaccactactcagaaaatatcggctcagagtcttccaaggacgtcatttgctaactctcagttacctgggttgactcagaatggacaatcggcaattatgcagaataattcttcacagcagcagtggttgaagccaatgcctgcgatttctactcctaattccccttcctttcgtcttcaacagcagaggcagcaaatgcttctacagcaccaaaactcaatgggtttgaacccacagcagctatcccaaattgtacaacagcagcaacagattgggcacccccagatgcatcaacagcaacagcaacagcaacaacaacagcagctttcacatcagcagcagtcttccccaaggatggctgctccagctggccaaaaatccctgagtttaactggctcacaaccagatgccactggatccggaacaactactccaggggggagttcaagtcaggggactgaagcaagcaatcagcttcttggaaagagaaagatacaggatttgatttcacaggtggatgcgcagggaaagcttgatcccgaagttgaagatcttcttctagagattgctgatgacttcattgattcggttactacatttgcttgcaatttggcgaagcatcggaaatcttcaactttggagtccaaggatgtactgttacatctagagaaaaactggcacttgactattccaggcttttcaagtgaagagaggaaacagtatccagaaaattcatcaagtgatctccacaaaaagcgtttggatgtgatacgtaccttgatggagacctcacaaaccgaaacaagtacaaatagtagtgctaaggaaactgtcagaccagtggcgggtgactcaaatcacatgatcagacctccaagttcagacaacatggtttcacagtctaatgcttctcaaatgttgcatgagatgacaaggttttgatggtccctggagttcttggtgtatctcccgtgttacctgtacagaccttgatgatcaagaaatgggaggcataggttatataggtgtagcataatggaagtttttactagacgttggagtcatctgaaggaacattgcagaatgaaccaccatgaaggcctgtaattatgcagtttagtttacagtagctaattcagcctgtgaggatgaagttgctcaaatttgatttctccaccatacccctctggaaaacatgtttactatagtcatgtaaattacctcctgatgccaaagaatgaggtgaagttgtttgttttcccctttatcaaacaggttttatgacgttacaaatcacaaacggtttttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119323" stop="109922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119024" g_stop="118116" g_length="909"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="909" r_length="909" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118115" i_stop="117630" i_length="486">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117420" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="1119" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117419" i_stop="114963" i_length="2457">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114962" g_stop="114462" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1120" r_stop="1620" r_length="501" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114461" i_stop="113995" i_length="467">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113994" g_stop="113920" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1621" r_stop="1695" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113919" i_stop="113671" i_length="249">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113670" g_stop="113592" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1696" r_stop="1774" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113591" i_stop="112307" i_length="1285">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112306" g_stop="112242" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1775" r_stop="1839" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112241" i_stop="111740" i_length="502">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111739" g_stop="111704" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1840" r_stop="1875" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111703" i_stop="111624" i_length="80">
            <donor d_prob="0.842" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111623" g_stop="111397" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1876" r_stop="2102" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111396" i_stop="110547" i_length="850">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="110546" g_stop="110227" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="2103" r_stop="2422" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2423" polyA_stop="2435"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E746212" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2422</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119024" e_stop="118116"/>
          <exon e_start="117629" e_stop="117420"/>
          <exon e_start="114962" e_stop="114462"/>
          <exon e_start="113994" e_stop="113920"/>
          <exon e_start="113670" e_stop="113592"/>
          <exon e_start="112306" e_stop="112242"/>
          <exon e_start="111739" e_stop="111704"/>
          <exon e_start="111623" e_stop="111397"/>
          <exon e_start="110546" e_stop="110227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACCACAGTCCCAAAATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGGCTTTATGGTCAAATGAATTTTGGGGTTGGAGGTACTTCGCTCCAGCAACAGCAGCAACAACAATTGCAGCAACAGCAATTGCAGCAACAATTTCAACAACAGCAACAGCAGCAGCAGCAACAGAACCAACAACAGCAGCAAATAGGTGGTCAGATGGGTAGCGGAAATTTAGCTAGGGCAGCTTTAATGGGACAGACTGGCCATCTGCCCATGTTATCTGGACAAGCTGCTGCTGCAGCAGCGGCTGTTGCCCAGTTCAATTTGCAATCTCAATTTTTGAATTCGGTATCCTTTCAGCACTTCTATTGCACCTTACCATAGATTTATATGCATCTAAAATTATAGGAAACTTATTTGTTGTTATTGTTATTGTTATTGCTGTTGTTATTACTGCTATTATTTGTACGTATTTAAATTCCTTTTCATATTTATTTGGTATGATGACAACACAATATGGACAAACGTGGTGAAGATTCATAAAGATGCCCCAACTTGTTCGGGACTAACACGTAGTAGTAGTTATTGTATCACTTTAACAGTTATAGGATTCGTACAAATGGATTGAAAGTTTTATATTATGTTTTACCAACTCTATTCCGGGCCATTTATTGCATAACTTTGATTGACAATTTAATGTTTGAGAATTTGGCAGCGTTTTAAACACAATTAAGAACACAGCTGCTATTTGTTATTGTTATTTTTCTTGATGAGGTTAATTGTAAATTGCCGTGCTTTTAAGTGTTGCTGAAAGGAGTTTTATTCTGGTTTCAGCCACGGCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAGGTGCCAATCTTGAAACATGCTAGTGATATATGTTTCATGCTAAAAACTATCCGTCTCAGTTGTTCTGCTGATTTTTTCACATGACACCGTGGTAAAATGGAGGTGACTCTTTCAAGAAACCTGGTTGCAAGATTTCTCACATCTGAGCTCAAGCTGTATAAACCAAAAAGAGCTGTCCACATAATTTATTCTTAAAATCAATTAGGACATGAATTTGGTTGTTAGTCATAACAGCAAGCCAGAGAGAATTTTTTGTGTTCTCATTCTCATGGAAATTTCCTTTCATGTGAGAGGGTTTTTTGAGATATTTTCGTGAAAGATTTCTCTGGGTATCTTAAAACTTTTATTTTATTTGTCTAGTGAATTAAACCAACACTGAAACTAGGATATGACTGTATTTATTAAATTGATCAGCGGATACTTGGATTATGCAAACACACACATATGCATAAATGTGTAACGCCATTTCTTGGTTGGTATGCTGCAATTTCTTGGTTTATATGCTGTAATAGCTTAGTCCTGAGGTGCCAACTGTGAGCATTTAACAGTAGATCCAGTATCATTAACTCAGTTTGTCCCTTTGCGGCAGATTCATGATGGTTTTCTTTTTTCCTAGAAATATGTTACTGCTGGTAGACCTATTTATGGCATGTTTTCCCCCCTTTTTTTTCATTTTTATGAAAGAAAACGTTAGGGTTTATCGGCTCCCGACCCTTGTACGACTTACAATTTCTCAAACTTGGTTAGTGGGGCAGATGAATGGAACAATTGTTCTGATATAATTAATTTGTTTTCCTGAGAGGTTTGAACCTTTTTTTAATGTTAAAGAAAGCATGAGAATGATTGTCCATTTATAAGCTAAAATACACTAGCTTATTTATTGTTTTCCCTTCAATTCTTCTTTTCCTAACCAATTGATCTCCATGCCAAGTTAGAACTGCTGACCTAAAGTGGGAGTTTTACTATTTTAAAAAATAACAAGTTACTTCAAGTTTGACATTACGTCATGGAAGTGGTAGTCGAGGAGTAGTGAGAGATGGAGACACTTAAAGTCAAGTGGATGTTTTGGGGAGGGGAAAGAAGCTTCATGGAGTGGTACTTGCTGAATGAAAAGGATGGAAGTGTTCTAACACATCGCAATTTCATACTTACGATGAAGACGTTTGAAAACAACATTGAAATGAAGAAGTTTAAAAACAGCATTGAAAATGAACTTGAAATTGGTATGTTAGGGTGTGCTGCCGTAGAAGCAATCATTTCTTTGTCATACGTGGAATGATGTATCTCCCACTTGTAGAATTACACTGGGTATGCTTTTGTTGTTGACTGCCTAATTTGCTACTTTCTATAAAATACTTCGGAACAATTTGATGCATTTTTTTTTTGTAACTTCAAAGTCCATTCTTTTTTTAATTTTTCTTAATTAGCAACGTTTATGGTTGTACTATTCAAGTTGAACGAACTTTTCTTTCCTGTAGTAGACTTCTAACAAATGTCATTTTGTCAAATAATCCTATGATTGTAACCCTCAACTATAGTTGGATTATGTTTTGTGTAAAATCATGTTTGAGTTAGTTGCTTCAATCACTTCATTTTCTCCAGATAACAAATAAAAATATTCATCAAGGGAGAAGATTTAGCCTGTAGGATCTGAACTTTCTGGTTTTAGTTATGCTCTAAGGCGCGAAAGAGAATCTTGGTGTCTGTTTCAGCAATTAACAATTCAAGGATAAGAAAATGCAAACAATCAAATTTGGGTTTTACTTCTATACATTAATGAATTCTTTACCTTATGATTTTTTGGGCTTTTATATGTCTCTTGTTTTATTGTTGCGGTTTTGCTCCTTCACATCAATAAAATCTTTACCTTATTCAAGATTTTAAAAAATCAAACTTTGTGGAGAAGTATAAATGATTTTCTGGATAAAATGTTCTTGCCAATAGATATTTTTATTGACATTGCAGTAGGAATTCCTTTTACTCGTCTTGCTAATTTTCACACTTGATACAAAGAAACTCTCTGCATGCTTTCTGGTCGAGCTTGTCGCCATGGGCTTGCCTAGTGTGGTTTATCTCCCCTGTGTGGTTTGCGGGCTATTACACTAGAGTTCACACCTGAAGGGTTATGGCGGGTGGTTCCCTCGTCTTAAAAATTAAATGAAATATCTCCTTGTGTAGTTACAAGTTAATCGAATCAGCCAAGATGAAATCTGGTTATAAAGTGCTTCATAGTTGTGGATGTCGTCATATTGCTGTATATTTGAAACTGATGGTCATTAGAGGCTGTCATAATTTCATGATTATCTTCACTTCTTTAATTTTGCTTTCTCATTTCAGTAGATCACATGTAATTTTCTTGTGGAATTTAATGTATATAATCCAATACTCTCTTGTCTTCCTTATCACGTTGCAATACTTTGTTTTTATTGCTAACTTTGACGTCACAATTTGCTGTAGAAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTGGTTGAAGCCAATGCCTGCGATTTCTACTCCTAATTCCCCTTCCTTTCGTCTTCAACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAGAAAGATACAGGATTTGGTTTCACAGGTCTTTCCTCCGCTTCTTTTTCTTAATCTCTAAAATATCGTTATCAGTGTTGAGTACTTCAAAAAGAAAGATAGATTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAGTTATTGTCTTCTAGTGGTAGGTATCCGTGATATTAGTCGAGGTGCGCAAAATCTAGCCCGGACACCACGGTTATCCAAAAAAAAAGAAACTTCAGAATTTTCTGACAGATTATGAGTACTGATGGTGATAACATTCCTCCCAACTTCCAAAGTGAATCTTTGATTCCAATCATAACATGTAGAATTTCTCTGAAATAAATTTCCGAAGAGAATGGAACTGACTGAAATTGGAATATTTGACTGAAGAGATTGAGTCTGACTAACCTAATATTACGGTCATCACTGTAACTATTGTAAAGTTGTCCTAGGGCTGATTTTGCTCGCTGATGTTGAACAACCACTGTTGTAATGTTTCAGGTGGATGCGCAGGGAAAGCTTGATCCCGAAGTTGAAGATCTTCTTCTAGAGATTGCTGATGACTTCATTGATTCGGTTAGGCTTGAAAAAGCTTTAATCATGTTTTGTCTTTCTTTTCTGGGGGATGTTGGTTGCTGTGTTATTTTGGGGTTTGCTGTGTACATTTGACTATCGCTGCAATATAGTAGTTGATATTTTTCTGGACTAAAATTTATTAATCTGGGCACTTGTACCAGTTTGTTCTAGTTTCTTCTGAAGTTCTTTGCAGATAATTGTTCGTGAAAATGACATACATGAATATATTTACATTGATTTTCACTGTAGGTTACTACATTTGCTTGCAATTTGGCGAAGCATCGGAAATCTTCAACTTTGGAGTCCAAGGATGTACTGTTACATCTAGGTTTGTGCCTGCAATTTGCGAATAAAAGATCTGTTCTTTAGTTTGTTTCCATTATTTGAAAGAAAGCGCGCTATGATGGCTTGGGATAGTAATTACTTGAAGTAATTATATTATTAGGTATAAAGGCTGTGATTTACTGCTATGTATGTTGGTTTTAAACTTTTTAGTATGATTTCACTATTTTCTTTTTGTTGATTATATATTCTTTACAGTCTTATGCTGTCTCATTCTCAAAAAAAAAGAGTCTTATGCTGTGAGATACTCCTCATCTAGGGAAGAGACCATCCTTCCTCTAAGGAATATTTAGTTTTACAAAATTTGGACCACATTTCGACTGACATAAAATGCGCCAAAGATTGTTATGTTTGTAGACAAATAAAATTCGTTAGGCTTAAGGCTCTCCCAGTAGCTGCTGTCCTATCCGTGTTCCTTAGTTTCAGATGATACTAGGAAAGCTCATAGATCATGTTCACAAATGGAGCTATATGCTGAACTGGGTAATGGCAGTTTGGTCAGCATATTCATTTTAATACCAACATTTATCATATCATCTCCTTCATTTTCTTGCACATTCCAAGCTTTTGATCTGCTTATGGATGCATCCAAATGCTATACTTGAATTGAAATGCCACCACTTACTTATTTATAAGTTGCAAGCAAAATTTCAACGACGGAATACAGTTTTAATACAAGCTCTCTCTGTCCCTACGGGGTACATCCGATAAAATTGGAGTGATACCAAACTCTCTTATCATTGGGAGTAGTTGCAGCTTATGCTATATCCATGTAACCTTTTGAATGTGATTCCAGGAACTTAAACATCAAACTTAACCCTTATGGTAGAACAATATGACCAGCCTCTAAAAGTTGCACATTTAAGTTGTATATATAGAGAGATCAAGTACTTTTAAAATTTTCCACCCAATTCATGCTTTAACTACAACAACTTACCCAGTGTTAACTCACAAGTTGGATGCATGTGCATTTATTGTCAAGGTACTATCTCAAATATTTGTAATATGTAATGTCAATATCAGTAATTTCCAACTGCTTTGCCCAATCTCATATATTTTCTCTATCATAGAGGACTACTTTATGATGTCTTCTAATATGCTTGTGGTGGGTGCACAAGCATGTGCGTACACCCACAGACATTTAGGATATGCTGTTTACACTTTACGGTTGGTATTTAGGGAGATGTTTGTATCGTCTAAAGATGTTTTGTATCATATATTAAGAAATAAAGGAAACTGAGGTATTTTTCTAATCTTGTGATTCTCTACAGAGAAAAACTGGCACTTGACTATTCCAGGCTTTTCAAGTGAAGAGAGGAAACAGTATCCAGAAAATGTATGTAGCTCTGCCTCTTTTTCTTAGCCTTTTCGTGGGTCGTACATTCCCTTCTTGTATCTGCATTAATGTAGAATAATGACATGACATGAATTATGACTACTAAAAGAGCTTTAAGGGTGTGACCTAGTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAGGTTCAGATCCCAGCTGAGACAAAAATAAGTGGTGATTTCTCCCCATCTGTCCTAGGCCCGGTATCTGTTGTTGTTGGGAGGTGGTAGATATCCTGTGGAATTAGTGGAGGTGAGCGCAAGCAATCCTGAACACCACGGTTATTTTAAAAAAAAAAGAATTATGACTACTAAATGTAATCTGTTACAATATCTTTAACTCATCCTTGCTCATTTGTTTAGTTGCTGATTCTAGTCCACAATTGCTGGTTATCTGCTTATTCATCAATGACTAGAGTTATTTAAGTTGCGTGGAAACTCAGGCTACTTTTTGACATAATGTTTCTAAATCTGTGCAGTCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTGGTGAGTGCAATTTTATATGATAATATTACCTGTGTCGATCTTGATGGATAATTTTTGGAATCATTGTTAATTTGACGCAGATACGTACCTTGATGGAGACCTCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATGGTAAGTATTACTTCTTTTAAGATGAATTCTACTGTGATTTGCTTGTTTTCTGGAGCGCTCAGCCTTTAGTGGCACTGAATTTTCATGCCCCATCAGTATGTTTGCACTTCACAAGCGATCCTTCTCTAGACCAATATCAGTTGCACATTGGATAAATGTGTTGTATGTAGTCTGGAGTCCTAAATCATATCTTGGCTGCTGCAAAATGATAGTAATGTTATTTCTTTTTGGGTTTCATTGCAAATCAGTAGTTTAGTTCTTAGGTACATCCGATAAAAAAATGTTTTTTGTCATATGACATGGCTCTAGTGATAAATTGGTACATCTCATTTGTTGGTGTAAAAAGCAAGTTTAGTATCGTTGCATGCGTGTTAGAATCTAAACCCTGAAGCTCTACACCACTTGACTACGGAAGCCTGCTTTCTGCTTTCCTGTAAAAGTCTAGGATGCTACCTTCGATTTCTGGCATAATTCTGAACAACACATACTGCTAAAGATATGCTGTTGTACCCCCCCATGACAATTACTAGCTGGCATGTCCTTTTCTGGACAACTCAGCATCACGTGCATATAGTAAGGCTCTATCTTGAGCCAATTGAGCATGGATTGCTGGTAGAAACAATGTTTTGCTTGGGCTTTTGGAAGTAAGTTTGCCACCACAGCTATACTTTCCAATTTTAGAGGCATCAGGAAGCTGTTCTCACATTTACATTGAAACAGCAGATGGGATCTGGTCCATCTGGAGACTTACTGCATATCTATTTATCTACTATTTTACAAGTCTCACTTTGTCATGCAATTTGCTTACAATGTTTATATTTTTTTTTTTTTGATATTCTCCATTTTGCAGATCAAGAAATGGGAGGCATAGGTTATATAGGTGTAGCATAATGGAAGTTTTTACTAGACGTTGGAGTCATCTGAAGGAACATTGCAGAATGAACCACCATGAAGGCCTGTAATTATGCAGTTTAGTTTACAGTAGCTAATTCAGCCTGTGAGGATGAAGTTGCTCAAATTTGATTTCTCCACCATACCCCTCTGGAAAACATGTTTACTATAGTCATGTAAATTACCTCCTGATGCCAAAGAATGAGGTGAAGTTGTTTGTTTTCCCCTTTATCAAACAGGTTTTATGACGTTACAAATCACAAACGGTTTTTTTTTCAA</genome_strand>
        <mrna_strand>GGACGACCACAGTCCCAAAATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGGCTTTATGGTCAAATGAATTTTGGGGTTGGAGGTACTTCGCTCCAGCAACAGCAGCAACAACAATTGCAGCAACAGCAATTGCAGCAACAATTTCAACAACAGCAACAGCAGCAGCAGCAACAGAACCAACAACAGCAGCAAATAGGTGGTCAGATGGGTAGCGGAAATTTAGCTAGGGCAGCTTTAATGGGACAGACTGGCCATCTGCCCATGTTATCTGGACAAGCTGCTGCTGCAGCAGCGGCTGTTGCCCAGTTCAATTTGCAATCTCAATTTTTGAATTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTGGTTGAAGCCAATGCCTGCGATTTCTACTCCTAATTCCCCTTCCTTTCGTCTTCAACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAGAAAGATACAGGATTTGATTTCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCGCAGGGAAAGCTTGATCCCGAAGTTGAAGATCTTCTTCTAGAGATTGCTGATGACTTCATTGATTCG.........................................................................................................................................................................................................................................................GTTACTACATTTGCTTGCAATTTGGCGAAGCATCGGAAATCTTCAACTTTGGAGTCCAAGGATGTACTGTTACATCTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAACTGGCACTTGACTATTCCAGGCTTTTCAAGTGAAGAGAGGAAACAGTATCCAGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTG................................................................................ATACGTACCTTGATGGAGACCTCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAAATGGGAGGCATAGGTTATATAGGTGTAGCATAATGGAAGTTTTTACTAGACGTTGGAGTCATCTGAAGGAACATTGCAGAATGAACCACCATGAAGGCCTGTAATTATGCAGTTTAGTTTACAGTAGCTAATTCAGCCTGTGAGGATGAAGTTGCTCAAATTTGATTTCTCCACCATACCCCTCTGGAAAACATGTTTACTATAGTCATGTAAATTACCTCCTGATGCCAAAGAATGAGGTGAAGTTGTTTGTTTTCCCCTTTATCAAACAGGTTTTATGACGTTACAAATCACAAACGGTTTTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549076" ref_strand="+" ref_description="SGN-E549076 [TUS-67-B8](-)">
      <seq>tcacaaacggaaacaagtacaaatagtagtgctaaggaaactgtcagaccagtggcgggtgactcaaatcacatgatcagacctccaagttcagacaacatggtttcacagtctaatgcttctcaaatgttgcatgagatgacaaggttttgatggtccctggagttcttggtgtatctcccgtgttacctgtacagaccttgatgatcaagaaatgggaggcataggttatataggtgtagcataatggaagtttttactagacgttggagtcatctgaaggaacattgcagaatgaaccaccatgaaggcctgtaattatgcagtttagtttacagtagctaattcagcctgtgaggatgaagttgctcaaatttgatttctccaccatacccctctggaaaacatgtttactatagtcatgtaaattacctcctgatgccaaagaatgaggtgaagttgtttgttttcccctttatcaaacaggttttatgacgttacaaatcaaaaaaaaaaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111902" stop="109942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111602" g_stop="111397" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111396" i_stop="110547" i_length="850">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110546" g_stop="110242" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="511" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E549076" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111602" e_stop="111397"/>
          <exon e_start="110546" e_stop="110242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATGGTAAGTATTACTTCTTTTAAGATGAATTCTACTGTGATTTGCTTGTTTTCTGGAGCGCTCAGCCTTTAGTGGCACTGAATTTTCATGCCCCATCAGTATGTTTGCACTTCACAAGCGATCCTTCTCTAGACCAATATCAGTTGCACATTGGATAAATGTGTTGTATGTAGTCTGGAGTCCTAAATCATATCTTGGCTGCTGCAAAATGATAGTAATGTTATTTCTTTTTGGGTTTCATTGCAAATCAGTAGTTTAGTTCTTAGGTACATCCGATAAAAAAATGTTTTTTGTCATATGACATGGCTCTAGTGATAAATTGGTACATCTCATTTGTTGGTGTAAAAAGCAAGTTTAGTATCGTTGCATGCGTGTTAGAATCTAAACCCTGAAGCTCTACACCACTTGACTACGGAAGCCTGCTTTCTGCTTTCCTGTAAAAGTCTAGGATGCTACCTTCGATTTCTGGCATAATTCTGAACAACACATACTGCTAAAGATATGCTGTTGTACCCCCCCATGACAATTACTAGCTGGCATGTCCTTTTCTGGACAACTCAGCATCACGTGCATATAGTAAGGCTCTATCTTGAGCCAATTGAGCATGGATTGCTGGTAGAAACAATGTTTTGCTTGGGCTTTTGGAAGTAAGTTTGCCACCACAGCTATACTTTCCAATTTTAGAGGCATCAGGAAGCTGTTCTCACATTTACATTGAAACAGCAGATGGGATCTGGTCCATCTGGAGACTTACTGCATATCTATTTATCTACTATTTTACAAGTCTCACTTTGTCATGCAATTTGCTTACAATGTTTATATTTTTTTTTTTTTGATATTCTCCATTTTGCAGATCAAGAAATGGGAGGCATAGGTTATATAGGTGTAGCATAATGGAAGTTTTTACTAGACGTTGGAGTCATCTGAAGGAACATTGCAGAATGAACCACCATGAAGGCCTGTAATTATGCAGTTTAGTTTACAGTAGCTAATTCAGCCTGTGAGGATGAAGTTGCTCAAATTTGATTTCTCCACCATACCCCTCTGGAAAACATGTTTACTATAGTCATGTAAATTACCTCCTGATGCCAAAGAATGAGGTGAAGTTGTTTGTTTTCCCCTTTATCAAACAGGTTTTATGACGTTACAAATCACAAA</genome_strand>
        <mrna_strand>TCACAAACGGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAAATGGGAGGCATAGGTTATATAGGTGTAGCATAATGGAAGTTTTTACTAGACGTTGGAGTCATCTGAAGGAACATTGCAGAATGAACCACCATGAAGGCCTGTAATTATGCAGTTTAGTTTACAGTAGCTAATTCAGCCTGTGAGGATGAAGTTGCTCAAATTTGATTTCTCCACCATACCCCTCTGGAAAACATGTTTACTATAGTCATGTAAATTACCTCCTGATGCCAAAGAATGAGGTGAAGTTGTTTGTTTTCCCCTTTATCAAACAGGTTTTATGACGTTACAAATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582714" ref_strand="+" ref_description="SGN-E582714 [8347]">
      <seq>tgggtggaatctcaggctactttttgacataatgtttctaactctgtgcagtcatcaagtgatctccacaaaaagcgtttggatgtgatacgtaccttgatggagacctcacaaacagaaacaagtacaaatagtagtgctaaggaaaccgtcagaccaggggcgggtgaatcaaatcacatgatcagacctccaagttcagacaacatggtttcacagtctaatgcttctcaaatgttgcatgagatgacaaggttttgatggtccctggagttcttggtgtatctcccgtgttaactgtacagaccttgatggtaagtattatttcttttaagatggattctactgtgatttgcttgttttctggagaacccagcctatagtgggcctgaattttcatgccccatcactatgtttgcactttacaagcgatccttctctagaccaatatcagttgcccattggataaatgtgctgtatgtctggagttctaagtcatgtcttgggctgctgcaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112090" stop="110888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111790" g_stop="111704" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111703" i_stop="111624" i_length="80">
            <donor d_prob="0.842" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111623" g_stop="111188" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="521" r_length="434" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E582714" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111790" e_stop="111704"/>
          <exon e_start="111623" e_stop="111188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTGGAAACTCAGGCTACTTTTTGACATAATGTTTCTAAATCTGTGCAGTCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTGGTGAGTGCAATTTTATATGATAATATTACCTGTGTCGATCTTGATGGATAATTTTTGGAATCATTGTTAATTTGACGCAGATACGTACCTTGATGGAGACCTCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATGGTAAGTATTACTTCTTTTAAGATGAATTCTACTGTGATTTGCTTGTTTTCTGGAGCGCTCAGCCTTTAGTGGCACTGAATTTTCATGCCCCATCAGTATGTTTGCACTTCACAAGCGATCCTTCTCTAGACCAATATCAGTTGCACATTGGATAAATGTGTTGTATGTAGTCTGGAGTCCTAAATCATATCTT-GGCTGCTGCAAAATGA</genome_strand>
        <mrna_strand>TGGGTGGAATCTCAGGCTACTTTTTGACATAATGTTTCTAACTCTGTGCAGTCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTG................................................................................ATACGTACCTTGATGGAGACCTCACAAACAGAAACAAGTACAAATAGTAGTGCTAAGGAAACCGTCAGACCAGGGGCGGGTGAATCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTAACTGTACAGACCTTGATGGTAAGTATTATTTCTTTTAAGATGGATTCTACTGTGATTTGCTTGTTTTCTGGAGAACCCAGCCTATAGTGGGCCTGAATTTTCATGCCCCATCACTATGTTTGCACTTTACAAGCGATCCTTCTCTAGACCAATATCAGTTGCCCATTGGATAAATGTGCTGTA--T-GTCTGGAGTTCTAAGTCATGTCTTGGGCTGCTGCAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728078" ref_strand="+" ref_description="SGN-E728078 [LA16CE11]">
      <seq>gcacattgcaggtctaatgcaggggaatcaattccatacagggaattcccatggccagtccttacaggcaatgggaatgatgggatctctcaacatgagctctcagctcagggcaaacggtgccctggcatatgcacaaagggtgaatcaaggtcagctgaggcagcagcagttgtcccagcaaaatcctctcaccactactcagaaaatatcggctcagagtcttccaaggacgtcatttgctaactctcagttacctgggttgactcagaatggacaatcggcaattatgcagaataattcttcacagcagcagtggttgaagccaatgcctgcgatttctactcctaattccccttcctttcgtcttcaacagcagaggcagcaaatgcttctacagcaccaaaactcaatgggtttgaacccacagcagctatcccaaattgtacaacagcagcaacagattgggcacccccagatgcatcaacagcaacagcaacagcaacaacaacagcagctttcacatcagcagcagtcttccccaaggatggctgctccagctggccaaaaatccctgagtttaactggctcacaaccagatgccactggatccggaacaactactccaggggggagttcaagtcaggggactgaagcaagcaatcagcttcttggaaagagaaagatacaggatttggtttcacaggtggatgcgcagggaaagcttgatcccgaagttgaagatcttcttctagagattgctgatgacttcattgattcggttactacatttgcttgcaatttggcgaagcatcggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="117924" stop="113332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117624" g_stop="117420" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117419" i_stop="114963" i_length="2457">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114962" g_stop="114462" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="706" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114461" i_stop="113995" i_length="467">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113994" g_stop="113920" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="781" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113919" i_stop="113671" i_length="249">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113670" g_stop="113632" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="820" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E728078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117624" e_stop="117420"/>
          <exon e_start="114962" e_stop="114462"/>
          <exon e_start="113994" e_stop="113920"/>
          <exon e_start="113670" e_stop="113632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAGGTGCCAATCTTGAAACATGCTAGTGATATATGTTTCATGCTAAAAACTATCCGTCTCAGTTGTTCTGCTGATTTTTTCACATGACACCGTGGTAAAATGGAGGTGACTCTTTCAAGAAACCTGGTTGCAAGATTTCTCACATCTGAGCTCAAGCTGTATAAACCAAAAAGAGCTGTCCACATAATTTATTCTTAAAATCAATTAGGACATGAATTTGGTTGTTAGTCATAACAGCAAGCCAGAGAGAATTTTTTGTGTTCTCATTCTCATGGAAATTTCCTTTCATGTGAGAGGGTTTTTTGAGATATTTTCGTGAAAGATTTCTCTGGGTATCTTAAAACTTTTATTTTATTTGTCTAGTGAATTAAACCAACACTGAAACTAGGATATGACTGTATTTATTAAATTGATCAGCGGATACTTGGATTATGCAAACACACACATATGCATAAATGTGTAACGCCATTTCTTGGTTGGTATGCTGCAATTTCTTGGTTTATATGCTGTAATAGCTTAGTCCTGAGGTGCCAACTGTGAGCATTTAACAGTAGATCCAGTATCATTAACTCAGTTTGTCCCTTTGCGGCAGATTCATGATGGTTTTCTTTTTTCCTAGAAATATGTTACTGCTGGTAGACCTATTTATGGCATGTTTTCCCCCCTTTTTTTTCATTTTTATGAAAGAAAACGTTAGGGTTTATCGGCTCCCGACCCTTGTACGACTTACAATTTCTCAAACTTGGTTAGTGGGGCAGATGAATGGAACAATTGTTCTGATATAATTAATTTGTTTTCCTGAGAGGTTTGAACCTTTTTTTAATGTTAAAGAAAGCATGAGAATGATTGTCCATTTATAAGCTAAAATACACTAGCTTATTTATTGTTTTCCCTTCAATTCTTCTTTTCCTAACCAATTGATCTCCATGCCAAGTTAGAACTGCTGACCTAAAGTGGGAGTTTTACTATTTTAAAAAATAACAAGTTACTTCAAGTTTGACATTACGTCATGGAAGTGGTAGTCGAGGAGTAGTGAGAGATGGAGACACTTAAAGTCAAGTGGATGTTTTGGGGAGGGGAAAGAAGCTTCATGGAGTGGTACTTGCTGAATGAAAAGGATGGAAGTGTTCTAACACATCGCAATTTCATACTTACGATGAAGACGTTTGAAAACAACATTGAAATGAAGAAGTTTAAAAACAGCATTGAAAATGAACTTGAAATTGGTATGTTAGGGTGTGCTGCCGTAGAAGCAATCATTTCTTTGTCATACGTGGAATGATGTATCTCCCACTTGTAGAATTACACTGGGTATGCTTTTGTTGTTGACTGCCTAATTTGCTACTTTCTATAAAATACTTCGGAACAATTTGATGCATTTTTTTTTTGTAACTTCAAAGTCCATTCTTTTTTTAATTTTTCTTAATTAGCAACGTTTATGGTTGTACTATTCAAGTTGAACGAACTTTTCTTTCCTGTAGTAGACTTCTAACAAATGTCATTTTGTCAAATAATCCTATGATTGTAACCCTCAACTATAGTTGGATTATGTTTTGTGTAAAATCATGTTTGAGTTAGTTGCTTCAATCACTTCATTTTCTCCAGATAACAAATAAAAATATTCATCAAGGGAGAAGATTTAGCCTGTAGGATCTGAACTTTCTGGTTTTAGTTATGCTCTAAGGCGCGAAAGAGAATCTTGGTGTCTGTTTCAGCAATTAACAATTCAAGGATAAGAAAATGCAAACAATCAAATTTGGGTTTTACTTCTATACATTAATGAATTCTTTACCTTATGATTTTTTGGGCTTTTATATGTCTCTTGTTTTATTGTTGCGGTTTTGCTCCTTCACATCAATAAAATCTTTACCTTATTCAAGATTTTAAAAAATCAAACTTTGTGGAGAAGTATAAATGATTTTCTGGATAAAATGTTCTTGCCAATAGATATTTTTATTGACATTGCAGTAGGAATTCCTTTTACTCGTCTTGCTAATTTTCACACTTGATACAAAGAAACTCTCTGCATGCTTTCTGGTCGAGCTTGTCGCCATGGGCTTGCCTAGTGTGGTTTATCTCCCCTGTGTGGTTTGCGGGCTATTACACTAGAGTTCACACCTGAAGGGTTATGGCGGGTGGTTCCCTCGTCTTAAAAATTAAATGAAATATCTCCTTGTGTAGTTACAAGTTAATCGAATCAGCCAAGATGAAATCTGGTTATAAAGTGCTTCATAGTTGTGGATGTCGTCATATTGCTGTATATTTGAAACTGATGGTCATTAGAGGCTGTCATAATTTCATGATTATCTTCACTTCTTTAATTTTGCTTTCTCATTTCAGTAGATCACATGTAATTTTCTTGTGGAATTTAATGTATATAATCCAATACTCTCTTGTCTTCCTTATCACGTTGCAATACTTTGTTTTTATTGCTAACTTTGACGTCACAATTTGCTGTAGAAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTGGTTGAAGCCAATGCCTGCGATTTCTACTCCTAATTCCCCTTCCTTTCGTCTTCAACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAGAAAGATACAGGATTTGGTTTCACAGGTCTTTCCTCCGCTTCTTTTTCTTAATCTCTAAAATATCGTTATCAGTGTTGAGTACTTCAAAAAGAAAGATAGATTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAGTTATTGTCTTCTAGTGGTAGGTATCCGTGATATTAGTCGAGGTGCGCAAAATCTAGCCCGGACACCACGGTTATCCAAAAAAAAAGAAACTTCAGAATTTTCTGACAGATTATGAGTACTGATGGTGATAACATTCCTCCCAACTTCCAAAGTGAATCTTTGATTCCAATCATAACATGTAGAATTTCTCTGAAATAAATTTCCGAAGAGAATGGAACTGACTGAAATTGGAATATTTGACTGAAGAGATTGAGTCTGACTAACCTAATATTACGGTCATCACTGTAACTATTGTAAAGTTGTCCTAGGGCTGATTTTGCTCGCTGATGTTGAACAACCACTGTTGTAATGTTTCAGGTGGATGCGCAGGGAAAGCTTGATCCCGAAGTTGAAGATCTTCTTCTAGAGATTGCTGATGACTTCATTGATTCGGTTAGGCTTGAAAAAGCTTTAATCATGTTTTGTCTTTCTTTTCTGGGGGATGTTGGTTGCTGTGTTATTTTGGGGTTTGCTGTGTACATTTGACTATCGCTGCAATATAGTAGTTGATATTTTTCTGGACTAAAATTTATTAATCTGGGCACTTGTACCAGTTTGTTCTAGTTTCTTCTGAAGTTCTTTGCAGATAATTGTTCGTGAAAATGACATACATGAATATATTTACATTGATTTTCACTGTAGGTTACTACATTTGCTTGCAATTTGGCGAAGCATCGGAAA</genome_strand>
        <mrna_strand>GCACATTGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTGGTTGAAGCCAATGCCTGCGATTTCTACTCCTAATTCCCCTTCCTTTCGTCTTCAACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAGAAAGATACAGGATTTGGTTTCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCGCAGGGAAAGCTTGATCCCGAAGTTGAAGATCTTCTTCTAGAGATTGCTGATGACTTCATTGATTCG.........................................................................................................................................................................................................................................................GTTACTACATTTGCTTGCAATTTGGCGAAGCATCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305213" ref_strand="+" ref_description="SGN-E305213 [cLEX-15-E17]">
      <seq>aacagcagaggcagcaaatgcttctacagcaccaaaactcaatgggtttgaacccacagcagctatcccaaattgtacaacagcagcaacagattgggcacccccagatgcatcaacagcaacagcaacagcaacaacaacagcagctttcacatcagcagcagtcttccccaaggatggctgctccagctggccaaaaatccctgagtttaactggctcacaaccagatgccactggatccggaacaactactccaagggggagttcaagtcaggggactgaagcaagcaatcagcttcttggaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115096" stop="114187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114796" g_stop="114487" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E305213" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114796" e_stop="114487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAG</genome_strand>
        <mrna_strand>AACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAAGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341081" ref_strand="+" ref_description="SGN-E341081 [cTOE-22-C16]">
      <seq>ggtagcggaaatttagctagggcagctttaatgggacagactggccatctgcccatgttatctggacaagctgctgctgcagcagcggctgttgcccagttcaatttgcaatctcaatttttgaattcgccacggcagaaggcaggtctaatgcaggggaatcaattccatacagggaattcccatggccagtccttacaggcaatgggaatgatgggatctctcaacatgagctctcagctcagggcaaacggtgccctggcatatgcacaaagggtgaatcaaggtcagctgaggcagcagcagttgtcccagcaaaatcctctcaccactactcagaaaatatcggctcagagtcttccaaggacgtcatttgctaactctcagttacctgggttgactcagaatggacaatcggcaattatgcagaataattcttcacagcagcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="118544" stop="114550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118244" g_stop="118116" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118115" i_stop="117630" i_length="486">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117420" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="339" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117419" i_stop="114963" i_length="2457">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114962" g_stop="114850" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="452" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E341081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118244" e_stop="118116"/>
          <exon e_start="117629" e_stop="117420"/>
          <exon e_start="114962" e_stop="114850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCGGAAATTTAGCTAGGGCAGCTTTAATGGGACAGACTGGCCATCTGCCCATGTTATCTGGACAAGCTGCTGCTGCAGCAGCGGCTGTTGCCCAGTTCAATTTGCAATCTCAATTTTTGAATTCGGTATCCTTTCAGCACTTCTATTGCACCTTACCATAGATTTATATGCATCTAAAATTATAGGAAACTTATTTGTTGTTATTGTTATTGTTATTGCTGTTGTTATTACTGCTATTATTTGTACGTATTTAAATTCCTTTTCATATTTATTTGGTATGATGACAACACAATATGGACAAACGTGGTGAAGATTCATAAAGATGCCCCAACTTGTTCGGGACTAACACGTAGTAGTAGTTATTGTATCACTTTAACAGTTATAGGATTCGTACAAATGGATTGAAAGTTTTATATTATGTTTTACCAACTCTATTCCGGGCCATTTATTGCATAACTTTGATTGACAATTTAATGTTTGAGAATTTGGCAGCGTTTTAAACACAATTAAGAACACAGCTGCTATTTGTTATTGTTATTTTTCTTGATGAGGTTAATTGTAAATTGCCGTGCTTTTAAGTGTTGCTGAAAGGAGTTTTATTCTGGTTTCAGCCACGGCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAGGTGCCAATCTTGAAACATGCTAGTGATATATGTTTCATGCTAAAAACTATCCGTCTCAGTTGTTCTGCTGATTTTTTCACATGACACCGTGGTAAAATGGAGGTGACTCTTTCAAGAAACCTGGTTGCAAGATTTCTCACATCTGAGCTCAAGCTGTATAAACCAAAAAGAGCTGTCCACATAATTTATTCTTAAAATCAATTAGGACATGAATTTGGTTGTTAGTCATAACAGCAAGCCAGAGAGAATTTTTTGTGTTCTCATTCTCATGGAAATTTCCTTTCATGTGAGAGGGTTTTTTGAGATATTTTCGTGAAAGATTTCTCTGGGTATCTTAAAACTTTTATTTTATTTGTCTAGTGAATTAAACCAACACTGAAACTAGGATATGACTGTATTTATTAAATTGATCAGCGGATACTTGGATTATGCAAACACACACATATGCATAAATGTGTAACGCCATTTCTTGGTTGGTATGCTGCAATTTCTTGGTTTATATGCTGTAATAGCTTAGTCCTGAGGTGCCAACTGTGAGCATTTAACAGTAGATCCAGTATCATTAACTCAGTTTGTCCCTTTGCGGCAGATTCATGATGGTTTTCTTTTTTCCTAGAAATATGTTACTGCTGGTAGACCTATTTATGGCATGTTTTCCCCCCTTTTTTTTCATTTTTATGAAAGAAAACGTTAGGGTTTATCGGCTCCCGACCCTTGTACGACTTACAATTTCTCAAACTTGGTTAGTGGGGCAGATGAATGGAACAATTGTTCTGATATAATTAATTTGTTTTCCTGAGAGGTTTGAACCTTTTTTTAATGTTAAAGAAAGCATGAGAATGATTGTCCATTTATAAGCTAAAATACACTAGCTTATTTATTGTTTTCCCTTCAATTCTTCTTTTCCTAACCAATTGATCTCCATGCCAAGTTAGAACTGCTGACCTAAAGTGGGAGTTTTACTATTTTAAAAAATAACAAGTTACTTCAAGTTTGACATTACGTCATGGAAGTGGTAGTCGAGGAGTAGTGAGAGATGGAGACACTTAAAGTCAAGTGGATGTTTTGGGGAGGGGAAAGAAGCTTCATGGAGTGGTACTTGCTGAATGAAAAGGATGGAAGTGTTCTAACACATCGCAATTTCATACTTACGATGAAGACGTTTGAAAACAACATTGAAATGAAGAAGTTTAAAAACAGCATTGAAAATGAACTTGAAATTGGTATGTTAGGGTGTGCTGCCGTAGAAGCAATCATTTCTTTGTCATACGTGGAATGATGTATCTCCCACTTGTAGAATTACACTGGGTATGCTTTTGTTGTTGACTGCCTAATTTGCTACTTTCTATAAAATACTTCGGAACAATTTGATGCATTTTTTTTTTGTAACTTCAAAGTCCATTCTTTTTTTAATTTTTCTTAATTAGCAACGTTTATGGTTGTACTATTCAAGTTGAACGAACTTTTCTTTCCTGTAGTAGACTTCTAACAAATGTCATTTTGTCAAATAATCCTATGATTGTAACCCTCAACTATAGTTGGATTATGTTTTGTGTAAAATCATGTTTGAGTTAGTTGCTTCAATCACTTCATTTTCTCCAGATAACAAATAAAAATATTCATCAAGGGAGAAGATTTAGCCTGTAGGATCTGAACTTTCTGGTTTTAGTTATGCTCTAAGGCGCGAAAGAGAATCTTGGTGTCTGTTTCAGCAATTAACAATTCAAGGATAAGAAAATGCAAACAATCAAATTTGGGTTTTACTTCTATACATTAATGAATTCTTTACCTTATGATTTTTTGGGCTTTTATATGTCTCTTGTTTTATTGTTGCGGTTTTGCTCCTTCACATCAATAAAATCTTTACCTTATTCAAGATTTTAAAAAATCAAACTTTGTGGAGAAGTATAAATGATTTTCTGGATAAAATGTTCTTGCCAATAGATATTTTTATTGACATTGCAGTAGGAATTCCTTTTACTCGTCTTGCTAATTTTCACACTTGATACAAAGAAACTCTCTGCATGCTTTCTGGTCGAGCTTGTCGCCATGGGCTTGCCTAGTGTGGTTTATCTCCCCTGTGTGGTTTGCGGGCTATTACACTAGAGTTCACACCTGAAGGGTTATGGCGGGTGGTTCCCTCGTCTTAAAAATTAAATGAAATATCTCCTTGTGTAGTTACAAGTTAATCGAATCAGCCAAGATGAAATCTGGTTATAAAGTGCTTCATAGTTGTGGATGTCGTCATATTGCTGTATATTTGAAACTGATGGTCATTAGAGGCTGTCATAATTTCATGATTATCTTCACTTCTTTAATTTTGCTTTCTCATTTCAGTAGATCACATGTAATTTTCTTGTGGAATTTAATGTATATAATCCAATACTCTCTTGTCTTCCTTATCACGTTGCAATACTTTGTTTTTATTGCTAACTTTGACGTCACAATTTGCTGTAGAAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTG</genome_strand>
        <mrna_strand>GGTAGCGGAAATTTAGCTAGGGCAGCTTTAATGGGACAGACTGGCCATCTGCCCATGTTATCTGGACAAGCTGCTGCTGCAGCAGCGGCTGTTGCCCAGTTCAATTTGCAATCTCAATTTTTGAATTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446713" ref_strand="+" ref_description="SGN-E446713 [cSTA-22-N21]">
      <seq>cagttcccaaaatccccaaactgaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcatcatcacaacacaaaccgataaacaaatggctgaaattccgtcatcttcaccaaaattaactcaaccatcgaaccctataatcgatactacaaaccaagtatccgccgccggagctgcatcgtcggcgacgtcgtctaatcccggaattacgatgacttctccgtctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttaacccaatctcagcaacagcagcagcagcatcaaattcagatgcagcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcaaatgcaggtccagcagcagcagaataattcgagtaatcttaacggcagtaacagcaacttgatgtccgcctctaattttcagatgcagcaaaacttgcagagatcaccctcaatggcgagaatgagtcaattgcaaatgcaacagcagcaacaacaatttggtttgatgaggcagcaatcaggaggactttatggtcaaatgaattttggggttggaggtacttcgctccagcaacagcagcaacaacaattacaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119315" stop="118028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119015" g_stop="118328" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E446713" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.049" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119015" e_stop="118328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAG-TCCCAAAATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGGCTTTATGGTCAAATGAATTTTGGGGTTGGAGGTACTTCGCTCCAGCAACAGCAGCAACAACAATTGCAGCAAC</genome_strand>
        <mrna_strand>CAGTTCCCAAAATCCCCAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCATCA---TCACAACACAAACCGATAAACAAATGGCTGAAATTCCGTCATCTTCACCAAAATTAACTCAACCATCGAACCCTATAATCGATACTACAAACCAAGTATCCGCCGCCGGAGCTGCATCGTCGGCGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCGTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAACCCAATCTCAGCAACAGCAGCAGCAGCATCAAATTCAGATG-C-------------A-GCAGCAGCAGCAGCAACAGCAATTGACACAATCT---CAACA--A-C---AGCAGC---AAATGCAGGTCCAGCAGCAGCAGAATAATTCGAGTAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTTCAGATGCAGCAAAACTTGCAGAGATCACCCTCAAT---GGCGAGAATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGACTTTATGGTCAAATGAATTTTGGGGTTGGAGGTACTTCGCTCCAGCAACAGCAGCAACAACAATTACAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544643" ref_strand="+" ref_description="SGN-E544643 [TUS-67-B8]">
      <seq>cctaaactgaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaagatgagtcaattggcaatggcacagcagcaacaacaatttggtttgatgaggcaccaatcgggaaggctttatggtcaaatgaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119302" stop="118079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119002" g_stop="118379" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E544643" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119002" e_stop="118379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGGCTTTATGGTCAAATGAATTTTG</genome_strand>
        <mrna_strand>CCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAAGATGAGTCAATTGGCAATGGCACAGCAGCAACAACAATTTGGTTTGATGAGGCACCAATCGGGAAGGCTTTATGGTCAAATGAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330971" ref_strand="+" ref_description="SGN-E330971 [cTOD-10-P15]">
      <seq>atccctaaactgaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaggatgagtcaattgcaaatgcaacagcagcaacaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119305" stop="118129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119005" g_stop="118429" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E330971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119005" e_stop="118429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATT</genome_strand>
        <mrna_strand>ATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305953" ref_strand="+" ref_description="SGN-E305953 [cLEY-17-G2]">
      <seq>ctaaactgaaaattcaaagtttccgatgactctgttgagctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaggatgagtcaattgcaaatgcaacagcagcaacaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119301" stop="118129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119001" g_stop="118429" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E305953" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119001" e_stop="118429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATT</genome_strand>
        <mrna_strand>CTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGAGCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317183" ref_strand="+" ref_description="SGN-E317183 [cTOA-28-I7]">
      <seq>gaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119294" stop="118193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118994" g_stop="118493" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E317183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118994" e_stop="118493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGC</genome_strand>
        <mrna_strand>GAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281782" ref_strand="+" ref_description="SGN-E281782 [cLER-14-F15]">
      <seq>atccctaaactgaaaattcaaagtttccgatgactctgttgatctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaattaacaaatgggtgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctattatggataccacaaaccaagttaccgccggcggagctgcaccgtcgacgacgtcgtctaattccggaattaccatgacttcttcttcttacaacaattcaatcgcacaatcgccttcaattgaccttcctcaaataccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119305" stop="118350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119005" g_stop="118650" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SGN-E281782" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119005" e_stop="118650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATG</genome_strand>
        <mrna_strand>ATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATTAACAAATGGGTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATTATGGATACCACAAACCAAGTTACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATTCCGGAATTACCATGACTTCTTCTTCTTACAACAATTCAATCGCACAATCGCCTTCAATTGACCTTCCTCAAATACCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331706" ref_strand="+" ref_description="SGN-E331706 [cTOD-7-P11]">
      <seq>gcctctggaatttgtttatgtccttggggttttcaatatttctcctacaaataatccatcactgctccctagcttgtatgaagatctataatttatctattatcactttagatttcaccaaaaaaactgcttccgttaacgtgcctacatagcactaaacaatcttcttcgttgcctatcatccttgattgaagttaatgattctcactataaaacaatggtagtgaatatcaattatctgtttcttttatttgactttagaagttttctagcatttgttttgtattcatcagattttgaaatatttaggtatagattgtggtttatgcgggccgtctaaattgtagattcatattaccactgttgtatcaacattatttgtttgtcatatgccttgaagagtttagcttaaataagtctggaaattactcttataagcatatatgtcttaaaaataagactggattagtctagcatttgcttattatgatagaagagtttggacaatacttctacatgtataattatgactataacttatcctaatatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123532" stop="124684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123832" g_stop="124384" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E331706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123832" e_stop="124384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTGGAATTTGTTTATGTCCTTGGGGTTTTCAATATTTCTCCTACAAATAATCCATCACTGCTCCCTAGCTTGTATGAAGATCTATAATTTATCTATTATCACTTTAGATTTCACCAAAAAAACTGCTTCCGTTAACGTGCCTACATAGCACTAAACAATCTTCTTCGTTGCCTATCATCCTTGATTGAAGTTAATGATTCTCACTATAAAACAATGGTAGTGAATATCAATTATCTGTTTCTTTTATTTGACTTTAGAAGTTTTCTAGCATTTGTTTTGTATTCATCAGATTTTGAAATATTTAGGTATAGATTGTGGTTTATGCGGGCCGTCTAAATTGTAGATTCATATTACCACTGTTGTATCAACATTATTTGTTTGTCATATGCCTTGAAGAGTTTAGCTTAAATAAGTCTGGAAATTACTCTTATAAGCATATATGTCTTAAAAATAAGACTGGATTAGTCTAGCATTTGCTTATTATGATAGAAGAGTTTGGACAATACTTCTACATGTATAATTATGACTATAACTTATCCTAATATATCT</genome_strand>
        <mrna_strand>GCCTCTGGAATTTGTTTATGTCCTTGGGGTTTTCAATATTTCTCCTACAAATAATCCATCACTGCTCCCTAGCTTGTATGAAGATCTATAATTTATCTATTATCACTTTAGATTTCACCAAAAAAACTGCTTCCGTTAACGTGCCTACATAGCACTAAACAATCTTCTTCGTTGCCTATCATCCTTGATTGAAGTTAATGATTCTCACTATAAAACAATGGTAGTGAATATCAATTATCTGTTTCTTTTATTTGACTTTAGAAGTTTTCTAGCATTTGTTTTGTATTCATCAGATTTTGAAATATTTAGGTATAGATTGTGGTTTATGCGGGCCGTCTAAATTGTAGATTCATATTACCACTGTTGTATCAACATTATTTGTTTGTCATATGCCTTGAAGAGTTTAGCTTAAATAAGTCTGGAAATTACTCTTATAAGCATATATGTCTTAAAAATAAGACTGGATTAGTCTAGCATTTGCTTATTATGATAGAAGAGTTTGGACAATACTTCTACATGTATAATTATGACTATAACTTATCCTAATATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262543" ref_strand="+" ref_description="SGN-E262543 [cLEG-63-A2]">
      <seq>ggtttatgatcaatgcttatatgaaagtttggagaatggttggccccttgaatttgtttatatccatggggttttcaatatttcccctacaaattatactctataacctggatccagctctataattgacttattgcctcttttgattaactatttacgcccacagaattcctttaatgtgctatgtaagtgtacttggagttgacacttaactgtcttcattctttttcttgtgtgtaagtttaagtatatacctgttaatgttcatataaaagagtgaacatctaattactggtgtgtttggtgtcatggtaaatgtttcttttgaaataagtggggttcttatatgttttctaatggttgagtgtggtgaaagcagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124406" stop="125388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124706" g_stop="125088" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E262543" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124706" e_stop="125088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTTGGTGTCATGGTAAATGTTTCTTTGAAAATAAGTGGGGTTCTTATATGTTTTCTAATGTTTGAGTGTGGTG-AAGCAGTGTGA</genome_strand>
        <mrna_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTTGGTGTCATGGTAAATGTTTCTTTTGAAATAAGTGGGGTTCTTATATGTTTTCTAATGGTTGAGTGTGGTGAAAGCAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261312" ref_strand="+" ref_description="SGN-E261312 [cLEG-68-H10]">
      <seq>ggtttatgatcaatgcttatatgaaagtttggagaatggttggccccttgaatttgtttatatccatggggttttcaatatttcccctacaaattatactctataacctggatccagctctataattgacttattgcctcttttgattaactatttacgcccacagaattcctttaatgtgctatgtaagtgtacttggagttgacacttaactgtcttcattctttttcttgtgtgtaagtttaagtatatacctgttaatgttcatataaaagagtgaacatctaattactggtgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124406" stop="125307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124706" g_stop="125007" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E261312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124706" e_stop="125007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTT</genome_strand>
        <mrna_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258087" ref_strand="+" ref_description="SGN-E258087 [cLEG-48-K4]">
      <seq>ggtttatgatcaatgcttatatgaaagtttggagaatggttggccccttgaatttgtttatatccatggggttttcaatatttcccctacaaattatactctataacctggatccagctctataattgacttattgcctcttttgattaactatttacgcccacagaattcctttaatgtgctatgtaagtgtacttggagttgacacttaactgtcttcattctttttcttgtgtggaagtttaagtatatacctgttaatgttcatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124406" stop="125278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124706" g_stop="124978" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E258087" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124706" e_stop="124978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAA</genome_strand>
        <mrna_strand>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGGAAGTTTAAGTATATACCTGTTAATGTTCATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256759" ref_strand="+" ref_description="SGN-E256759 [cLEG-40-C11]">
      <seq>gtttatgatcaatgcttatatgaaagtttggagaatggttggccccttgaatttgtttatatccatggggttttcaatatttcccctacaaattatactctataacctggatccagctctataattgacttattgcctcttttgattaactatttacgcccacagaattcctttaatgtgctatgtaagtgtacttggagttgacacttaactgtcttcattctttttcttgtgtgtaagtttaagtatatacctgttaatgttcatataaaagagtgaacatctaattactggtgtgtttggtgtcatggtaaatgtttctttgaaaataagtggggttcttatatgttttctaatgtttgagtgtggtgaagcagtgtgaagatggtgaggggatgttggctagttccattgaattctctttttgtggtgcaaaccccatattatgtactccgttatttttgaaaaagggagggttggattagatgtgatgtgaatggtagggagtagtcgatcggtgtggaatcccaggatgatatttggtttcctactttccagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124407" stop="125565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124707" g_stop="125265" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E256759" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124707" e_stop="125265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTTGGTGTCATGGTAAATGTTTCTTTGAAAATAAGTGGGGTTCTTATATGTTTTCTAATGTTTGAGTGTGGTGAAGCAGTGTGAAGATGGTGAGGGGATGTTGGCTAGTTCCATTGAATTCTCTTTTTGTGGTGCAAACCCCATATTATGTACTCCGTTATTTTTGAAAAAGGGAGGGTTGGATTAGATGTGATGTGAATGGTAGGGAGTAGTCGATCGGTGTGGAATCCCAGGATGATATTT-GTTTCCTAC-TTCCAGTTT</genome_strand>
        <mrna_strand>GTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTTGGTGTCATGGTAAATGTTTCTTTGAAAATAAGTGGGGTTCTTATATGTTTTCTAATGTTTGAGTGTGGTGAAGCAGTGTGAAGATGGTGAGGGGATGTTGGCTAGTTCCATTGAATTCTCTTTTTGTGGTGCAAACCCCATATTATGTACTCCGTTATTTTTGAAAAAGGGAGGGTTGGATTAGATGTGATGTGAATGGTAGGGAGTAGTCGATCGGTGTGGAATCCCAGGATGATATTTGGTTTCCTACTTTCCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570045" ref_strand="+" ref_description="SGN-E570045 [14568]">
      <seq>ctcccgaatcacaaaaaaataatactgtaatatatatttcttgattcgatttttatacaatctttttttggctcttcgattcacgcatctctccctcttttttttttctttccaattggcgctgttatcaaaattttgaatttcagctgggaagaatgatgtgactgttcttgtggaattcccttatgaaattccagttacatattatgcatttgcaatggaggcaagtgaacccaaaattgaggattgtgctgttccggtaacaagcacaatcagggctttggagaaggagattgctcatcctattgtttaccagcttgtccgggttgatggcgatgggagattagtcccggcaactcaggatgaaattatggtggttgaggacttgcttgaagatgataggtgtgaatccaagcttgttccagataccagacagatttcaaaatcctgcataactgaaggataccttcttgagagaaattcatttcaagttacagaagaaaagtcaatgtgttagttgacccaagtgcccgaccttgcggacaaaatagatgctccttgaaaaagggtgggctggttcatggattggctcctctctcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126800" stop="132353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127119" g_stop="127288" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="188" r_length="161" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127289" i_stop="127611" i_length="323">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127612" g_stop="127748" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="325" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127749" i_stop="128982" i_length="1234">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128983" g_stop="128997" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="340" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128998" i_stop="130335" i_length="1338">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.746" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130336" g_stop="130495" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="500" r_length="160" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130496" i_stop="130642" i_length="147">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130643" g_stop="130704" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="568" r_length="68" r_score="0.694"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="130705" i_stop="132020" i_length="1316">
            <donor d_prob="0.998" d_score="0.60"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="132021" g_stop="132053" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="603" r_length="35" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E570045" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127119" e_stop="127288"/>
          <exon e_start="127612" e_stop="127748"/>
          <exon e_start="128983" e_stop="128997"/>
          <exon e_start="130336" e_stop="130495"/>
          <exon e_start="130643" e_stop="130704"/>
          <exon e_start="132021" e_stop="132053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATATATTTCTTGATTCGAATTTTATACAATTTTTTTTTTTGCTCTTCGATTCACGCATCTCTTTCTCTTTTTTTTTTCTTTCTTTCTTTCCAATTGGCGCTGTTATCAAAATTTTGAATTTCAGCTGGGAAGAATGATGTGACTGTTCTTGTGGAATTCCCTTATGGTGAGTTCAATTTCAATTTCAGTATTTGTTGATTCTGATTATATTTAGTTAAAAGTTTTGATTGAATCTTTTATACATTTATTAATCATTCTTCGGATATTGCTGTAATTGGGTGGATTTTTGTTCTGCATGTACCCTAGGTTTTGATTGTTAGACGCATAGTTATTGAATTCTCTCTCTCAAATTATCAAATTTATGTAAGGGCCTCCTGTAACATAGCCTCTTTAATTCCACCAGGCAAGGCTAAGGTTTGCGTACACTTTATCTTCACCGTATCACACTTTGGGTATGTTGTTGTAAATTGTCAAATTTGTGTGTTTCAGAAATTCCAGTTGCATATTATGCATTTGCAATGGAGGCAAGTGAACCCAAATTTGAGGATAGCGCTGTTCCGGTAACAAGCACAATAAGGGCTTTGGAGAAGGAGATTGCTCATCCTATTGTTTACCAGCTTGTCCGGGTATGACACATGAATACAGTAATTATTGACAAGCACCATAAGGACTTATGTTTTATTTATAGTTTGTAAGCATAATAATAGGGTGTTAATTTTTCTTGTACTTTATGGAAAGATCCGAGTTGCTAGTGATCAGCGAATGGTTGTAGAATGATTTGCTTCCTCAACATGGAACAAATGTTTTACTTACAGTTTTGAGGGAGCTTCTTTGATAATGACGTGGTCTTTTTTCTACCATCCATCTTTAGTCTCCAGTCGGCCAAGTAATGGAAGAAATTTCAGTGTTTAAAAAGATTATATGAATCGTTTGCTTCTATATTGATAAAAAAATGGAAGAATGTATGTACTAATTCTCAAAAAAAAAAAGAAAAAATGAAAGAAGGTTCAGATTTGTATTTGGGGATAGGAAAGCAGCTAAAGGTTAAATCCGCAGGCAAAGAGAGTTGAAAGAGAATTTTATTGTACTCATCAAATGGGAAAGGGTGGTGGTGGTGAGATAGTTACTTGAGAAAATTTTAGGTGATTACCTAGAGCTCCCTTGTTTTTAGATCATAAGTTCAGCGAATAGCTCTAGGTTAAGACTAATTAGAAAGAAGTATTCCTTGAGCTCACTCTATATAGTACTTCGTCCATCCCAAATTGAGTTTCTCAGTTTAACTAGGCACAAAGTTTTTACTTTTTAATTTTGTGTTCTTAAATTAAAGATGTCTCTAGTCCTTTAAGTCTCGTGGTCTTACACTTGCCATGTTGGAACTGAAAACTCACTAAATATAGAAATGATTATAGAAACAGGCACACTTTTGGGACATACCAAAAAGGAAAGGTAGACACTTAAATTGGGATGGAAGGACTAATTAACATCACCATCATCCTTTTGATTAAGGTTTCCATCCTAAATCTTGTCAGAAATAATTACAAGTTCTGGATTTTTCAGAAAGGTAGTTCTAGAAAGGTGTTTTCTTTCTACACTGCCTTCTAGTTACCTTTTGTTTTGTGGTTGACATTTCTTCTCCTCATAATTTTTTTTCCAGTTGGTCCTATTTTACAACTCTCAGTGGCTTTTATGTGTTGGGTCAATATTTGTTAGAATTCTATTAGGAGGATTATATTTTTCCTCCAACTCTCTCTAGAACTTTTTTCCCAAGTTGTAAAGGTAAATCAGACATTCTACTTGTAGCCGGAGAACCATGTTTGATGTGGTTTTAGAGAGTAATTGATGTTTATTACAATTGTGTAGGTTGATGGCGATGGAAGATTAGTCCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGCCGTTTTTGCTCACGGATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGAGATTAGTCCCAGCAACTCAAGATGAAATTATGGTAGTTGAGGACTTGCTTGAAGATGATAAGTGTGAATCCAAGCTTGTCCCAGATACCAGACAGATTTCAGAATCCTGCGTAACTGAAGGATACCCTCTTGAGAGAAATTCATTTCAAGTTACAGAAGGTTTAGAACTTGATTTTAAATAATTAACTTGTCTTCATCAAAATTTATGACTATTTATTGGGGCTAAAGGATGGTTCTTTTTGGCCTTCCCTCAATGAGTATCATTTTCTGATAAATTATAGTCTGAATATCCTGTTGTTAGTGCAGAAAAGTCAAATGTGTTGGTTGACTC-AGTGCCTGA-CTTG-GGA-AAAATAGATGCTCC-T-AATAA-GGTATGTAAGTTGCACTCTTCAGCTTTGCTTTCTACATCTCCTTGTTCTAGGGCCTTTTTCGTACTTCCTTTCTCTCATTTTTTGTATGGTGGTATTTGACTGGGTTGCACTGTGGAGTTAGAAAGGAAAGACTATATTTTGATCTTAAAAATGCTATAACATTTATCTGGTTATAGAAGTATGCCATTAAAGGTAAAATGATATGTTTAATGTAGTGTTTTGGACGTCGAAAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACGAGGCGAGGCGAACACCCTTTAATACCAAAAAATTAAAATATTTAATTGCATATGTAAATAACCAAACAATAACATATTAACAATTTTTTCAATTCAAAAAGTAAAAATAGATAGTACATACTAAAAGTCTAGAACTTGAATGAGAAAGAAAAGAACAAAAGTCAAAACAAAGGTAGAAGTGACTCAAGTCTGAAGAAAAAAAAAAGAAATATGTATTATGTTAACTTTCTCAAAAAAAGAAGAAATATGTATTGGTTAGACTTTGGAGTCACTGGAAAAGCCTGGCTATTTGCTGGAGGAGTCTAGTCAAAAATCCTAAAATTACCTTTTAACTTTTAAAACCCTAGATTGGTTGCCTTTTTTTTAAGAAAATACAAAAGGCGACACCTTTCTAGCCTTTCTCGCCCCCTGCCTCTAGCCTTTTGTCGTCATAGCGTCGCCTTTTGAAGATCGCCTCGCCACAAAGCTAAAAGGCGATGAATGGTCGCCTCGCCTTGCCTCTTGCCATTGGCTAATGTTAAACAGTTTACAAGTTTAGAATCTGACATTTGGAATAAATTGAAATGGAAAGAGTGCCATATAGAATAGAACAAAAAGATGTAGAGAGTGATTTTTTAGTATGAGATATTGTGTTAGTCTGTTAGATAAAGGAGGGTGTTTCAGTGTGCTGACTATCATATTAAAGATAGGAGGAGGGTTGCTGTGAAGGAACAATATGTTGCTACTCACCTAGGAGTGCTTTACATTGGCTGACATGAGCCTGAATTGTGTGGAATTGATTCAGAGGATTCATATTGTTGGAAATAACTAGTTTGGCTCAACTTATTTGACATGTTTACTGTGTCGACAAAAAAATTCTTCGTGGTCAACTTTAATTGTTTGATTTTGAACCATTCACAATAGTGTTTCTCTTTTGTGTGACACTAGAAAGTCAAAAGAAGTATATTATGGTTTTTGTATACTTCGTTTTGCTTCTACTAATGTTAGTAGTGACTGTATTGCGACATATTAGTCGTCTTTGACTGATTTAGACTGGAATAAACTTCCAGGT-GGCT-GTTCATGGATTGGCTCCTCTCTCAGAA</genome_strand>
        <mrna_strand>TAATATATATTTCTTGATTCGATTTTTATACAA-TCTTTTTTTGGCTCTTCGATTCACGCATCTCTCCCTCTTTTTTTTTTCTTTC---C-----AATTGGCGCTGTTATCAAAATTTTGAATTTCAGCTGGGAAGAATGATGTGACTGTTCTTGTGGAATTCCCTTATG...................................................................................................................................................................................................................................................................................................................................AAATTCCAGTTACATATTATGCATTTGCAATGGAGGCAAGTGAACCCAAAATTGAGGATTGTGCTGTTCCGGTAACAAGCACAATCAGGGCTTTGGAGAAGGAGATTGCTCATCCTATTGTTTACCAGCTTGTCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGCGATGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTAGTCCCGGCAACTCAGGATGAAATTATGGTGGTTGAGGACTTGCTTGAAGATGATAGGTGTGAATCCAAGCTTGTTCCAGATACCAGACAGATTTCAAAATCCTGCATAACTGAAGGATACCTTCTTGAGAGAAATTCATTTCAAGTTACAGAAG...................................................................................................................................................AAAAGTC-AATGTGTTAGTTGACCCAAGTGCCCGACCTTGCGGACAAAATAGATGCTCCTTGAAAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCTGGTTCATGGATTGGCTCCTCTCTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318749" ref_strand="+" ref_description="SGN-E318749 [cTOB-11-A15]">
      <seq>aaaagagctcgcaaaccaacaaaaagatatattgaagagctttcagaaatagaatctagggaaaccagtgaaaagttagcatcaccagaaaaaatccccagataccaatttgcatgtccagaaactcatataaggcccaccaaaaatgtgaggtcatatgcgagacctctggtcaccaggcaagattctctgggaggttctggggtgcaaattccatttgtttctcggattcgaaggagccgtccgcgtgagaacttcatgcctcttttgaaacttcagccgagtggtatggacatggctaccagacaagtaaggagtgcttttgacatatctgggccacaagaagatgataagagaaataatgacctgatcaagaccagctcatctactggatggactgaacagcctcgtatcgctgcttgtgaaaaggatgagcattccagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132273" stop="134060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132573" g_stop="132842" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132843" i_stop="133316" i_length="474">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133317" g_stop="133454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="408" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133652" g_stop="133760" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="517" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E318749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132573" e_stop="132842"/>
          <exon e_start="133317" e_stop="133454"/>
          <exon e_start="133652" e_stop="133760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGCTCGCAAACCAACAAAAAGATATATTGAAGAGCTTTCAGAAATAGAATCTAGGGAAACCAGTGAAAAGTTAGCATCACCAGAAAAAATCCCCAGATACCAATTTGCATGTCCAGAAACTCATATAAGGCCCACCAAAAATGTGAGGTCATATGCGAGACCTCTGGTCACCAGGCAAGATTCTCTGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTGGTAATATAAATATCTTAAATATAGACTTATAAATGCTTACATGGCTCATTCCTAGCATGTATTTGTATATTGGGACTTACAATTTATAATTGTTTCTATGAGTTTAAACCCTGCATATAGACATGATTTACTCCCTATACATGTGAATGAAACTTTTGGGCTACTTGGATTACTTGCAATTTTGCTATACTCTTCTTCCTTGCATAGATTATTTATTTTCAGTTTGAACTGCATTTGTCAGATGATTCTCTGTTTGCATTTCCAACATACTATGTGCATGTCAGTGTGTGTGTGTGTGTTTCTCAATGAATTCATTATGCCTATCTATATCAAGTTGAATCATTTATCTTTTGAATTAAATTACATGGTTTTTAGACTTTGAATTTCAGAATTATGTCATGTACTACTATGACTGATGGAAACATTATTTTTGTTTCTCTGGGTTATTGATGCACTTCAAGTTGAATATTGCAGAAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCTGTAAATACAACTTCCTTTTCTACTATTTGCCTTTGAATTCTGTGTGAGCTTGATTTTCTCAAATCATTTCTTTAGTCAAATATTGCTCCCTTTAACCAAACGAATCGTGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATG</genome_strand>
        <mrna_strand>AAAAGAGCTCGCAAACCAACAAAAAGATATATTGAAGAGCTTTCAGAAATAGAATCTAGGGAAACCAGTGAAAAGTTAGCATCACCAGAAAAAATCCCCAGATACCAATTTGCATGTCCAGAAACTCATATAAGGCCCACCAAAAATGTGAGGTCATATGCGAGACCTCTGGTCACCAGGCAAGATTCTCTGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT.....................................................................................................................................................................................................CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238862" ref_strand="+" ref_description="SGN-E238862 [cLEL-9-H8](-)">
      <seq>cagaaactcatataaggcccaccaaaaatgtgaggtcatatgcgagacctctggtcaccaggcaagattctctgggaggttctggggtgcaaattccatttgtttctcggattcgaaggagccgtccgcgtgagaacttcatgcctcttttgaaacttcagccgagtggtatggacatggctaccagacaagtaaggagtgcttttgacatatctgggccacaagaagatgataagagaaataatgacctgatcaagaccagctcatctactggatggactgaacagcctcgtatcgctgcttgtgaaaaggatgagcattccagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatgtggtgactgtacccaccccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132391" stop="134101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132691" g_stop="132842" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132843" i_stop="133316" i_length="474">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133317" g_stop="133454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="290" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133652" g_stop="133802" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="441" r_length="151" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E238862" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132691" e_stop="132842"/>
          <exon e_start="133317" e_stop="133454"/>
          <exon e_start="133652" e_stop="133802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTCATATAAGGCCCACCAAAAATGTGAGGTCATATGCGAGACCTCTGGTCACCAGGCAAGATTCTCTGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTGGTAATATAAATATCTTAAATATAGACTTATAAATGCTTACATGGCTCATTCCTAGCATGTATTTGTATATTGGGACTTACAATTTATAATTGTTTCTATGAGTTTAAACCCTGCATATAGACATGATTTACTCCCTATACATGTGAATGAAACTTTTGGGCTACTTGGATTACTTGCAATTTTGCTATACTCTTCTTCCTTGCATAGATTATTTATTTTCAGTTTGAACTGCATTTGTCAGATGATTCTCTGTTTGCATTTCCAACATACTATGTGCATGTCAGTGTGTGTGTGTGTGTTTCTCAATGAATTCATTATGCCTATCTATATCAAGTTGAATCATTTATCTTTTGAATTAAATTACATGGTTTTTAGACTTTGAATTTCAGAATTATGTCATGTACTACTATGACTGATGGAAACATTATTTTTGTTTCTCTGGGTTATTGATGCACTTCAAGTTGAATATTGCAGAAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCTGTAAATACAACTTCCTTTTCTACTATTTGCCTTTGAATTCTGTGTGAGCTTGATTTTCTCAAATCATTTCTTTAGTCAAATATTGCTCCCTTTAACCAAACGAATCGTGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAAC</genome_strand>
        <mrna_strand>CAGAAACTCATATAAGGCCCACCAAAAATGTGAGGTCATATGCGAGACCTCTGGTCACCAGGCAAGATTCTCTGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT.....................................................................................................................................................................................................CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368135" ref_strand="+" ref_description="SGN-E368135 [TUS-22-C14]">
      <seq>tgggaggttctggggtgcaaattccatttgtttctcggattcgaaggagccgtccgcgtgagaacttcatgcctcttttgaaacttcagccgagtggtatggacatggctaccagacaagtaaggagtgcttttgacatatctgggccacaagaagatgataagagaaataatgacctgatcaagaccagctcatctactggatggactgaacagcctcgtatcgctgcttgtgaaaaggatgagcattccagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatgtggtgactgtacccacccaaaaaggaggaatgaggagaaaacatcatcgaccttggactatcaatgaggttgttaagctagtggaaggtgtagccaggtatggtgctggtaaatggtctgagataaaacggcttgctttttcagcttgcccttatcgaacttcggtggacctgaaggacaagtggagaaatctgctaaaagctagttttgtgcagttgcctgcagaaaaaggggttagcattatttgaatttttattatgcatgttgtttcattgttgttgatgattttgtcaaggacttgtttcaactataagacggcttcatacatttactctgtttcagtcgaaatggtgattcaccttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132463" stop="134547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132763" g_stop="132842" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132843" i_stop="133316" i_length="474">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133317" g_stop="133454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="218" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133652" g_stop="133936" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="503" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134057" g_stop="134247" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="694" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E368135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132763" e_stop="132842"/>
          <exon e_start="133317" e_stop="133454"/>
          <exon e_start="133652" e_stop="133936"/>
          <exon e_start="134057" e_stop="134247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTGGTAATATAAATATCTTAAATATAGACTTATAAATGCTTACATGGCTCATTCCTAGCATGTATTTGTATATTGGGACTTACAATTTATAATTGTTTCTATGAGTTTAAACCCTGCATATAGACATGATTTACTCCCTATACATGTGAATGAAACTTTTGGGCTACTTGGATTACTTGCAATTTTGCTATACTCTTCTTCCTTGCATAGATTATTTATTTTCAGTTTGAACTGCATTTGTCAGATGATTCTCTGTTTGCATTTCCAACATACTATGTGCATGTCAGTGTGTGTGTGTGTGTTTCTCAATGAATTCATTATGCCTATCTATATCAAGTTGAATCATTTATCTTTTGAATTAAATTACATGGTTTTTAGACTTTGAATTTCAGAATTATGTCATGTACTACTATGACTGATGGAAACATTATTTTTGTTTCTCTGGGTTATTGATGCACTTCAAGTTGAATATTGCAGAAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCTGTAAATACAACTTCCTTTTCTACTATTTGCCTTTGAATTCTGTGTGAGCTTGATTTTCTCAAATCATTTCTTTAGTCAAATATTGCTCCCTTTAACCAAACGAATCGTGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAGGTTGGTATTGGCTTGTCTATTTAATAGAATCTAGTAATTGGAATTCATTGGGAATAAATTAGTCCGGGACTGCTTTTTGTACATGTGATGTAATGCTGCAAATTATCTATGTATTTGCAGGACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATG</genome_strand>
        <mrna_strand>TGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT.....................................................................................................................................................................................................CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAG........................................................................................................................GACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238436" ref_strand="+" ref_description="SGN-E238436 [cLED-17-F18]">
      <seq>tgggaggttctggggtgcaaattccatttgtttctcggattcgaaggagccgtccgcgtgagaacttcatgcctcttttgaaacttcagccgagtggtatggacatggctaccagacaagtaaggagtgcttttgacatatctgggccacaagaagatgataagagaaataatgacctgatcaagaccagctcatctactggatggactgaacagcctcgtatcgctgcttgtgaaaaggatgagcattccagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatgtggtgactgtacccacccaaaaaggaggaatgaggagaaaacatcatcgaccttggactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132463" stop="134122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132763" g_stop="132842" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132843" i_stop="133316" i_length="474">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133317" g_stop="133454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="218" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133652" g_stop="133822" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="389" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E238436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132763" e_stop="132842"/>
          <exon e_start="133317" e_stop="133454"/>
          <exon e_start="133652" e_stop="133822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTGGTAATATAAATATCTTAAATATAGACTTATAAATGCTTACATGGCTCATTCCTAGCATGTATTTGTATATTGGGACTTACAATTTATAATTGTTTCTATGAGTTTAAACCCTGCATATAGACATGATTTACTCCCTATACATGTGAATGAAACTTTTGGGCTACTTGGATTACTTGCAATTTTGCTATACTCTTCTTCCTTGCATAGATTATTTATTTTCAGTTTGAACTGCATTTGTCAGATGATTCTCTGTTTGCATTTCCAACATACTATGTGCATGTCAGTGTGTGTGTGTGTGTTTCTCAATGAATTCATTATGCCTATCTATATCAAGTTGAATCATTTATCTTTTGAATTAAATTACATGGTTTTTAGACTTTGAATTTCAGAATTATGTCATGTACTACTATGACTGATGGAAACATTATTTTTGTTTCTCTGGGTTATTGATGCACTTCAAGTTGAATATTGCAGAAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCTGTAAATACAACTTCCTTTTCTACTATTTGCCTTTGAATTCTGTGTGAGCTTGATTTTCTCAAATCATTTCTTTAGTCAAATATTGCTCCCTTTAACCAAACGAATCGTGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATC</genome_strand>
        <mrna_strand>TGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT.....................................................................................................................................................................................................CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368134" ref_strand="+" ref_description="SGN-E368134 [TUS-22-C14](-)">
      <seq>atcaagaccagctcatctactggatggactgaacagcctcgtatcgctgcttgtgaaaaggatgagcattccagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatgtggtgactgtacccacccaaaaaggaggaatgaggagaaaacatcatcgaccttggactatcaatgaggttgttaagctagtggaaggtgtagccaggtatggtgctggtaaatggtctgagataaaacggcttgctttttcagcttgcccttatcgaacttcggtggacctgaaggacaagtggagaaatctgctaaaagctagttttgtgcagttgcctgcagaaaaaggggttagcattatttgaatttttattatgcatgttgtttcattgttgttgatgattttgtcaaggacttgtttcaactataagacggcttcatacatttactctgtttcagtcgaaatggtgattcaccttgtatgagattataaagaaggtaaggtattctagaggacgttgatgtagttagtactcaacttatcaacaggaattagttataggaatttactctattagacggagactgcatttttaaacaactagtttttgtctcatatttaaaagttctaaagttctaattttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133116" stop="134712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133416" g_stop="133454" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133652" g_stop="133936" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="324" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134057" g_stop="134418" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="686" r_length="362" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E368134" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133416" e_stop="133454"/>
          <exon e_start="133652" e_stop="133936"/>
          <exon e_start="134057" e_stop="134418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCTGTAAATACAACTTCCTTTTCTACTATTTGCCTTTGAATTCTGTGTGAGCTTGATTTTCTCAAATCATTTCTTTAGTCAAATATTGCTCCCTTTAACCAAACGAATCGTGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAGGTTGGTATTGGCTTGTCTATTTAATAGAATCTAGTAATTGGAATTCATTGGGAATAAATTAGTCCGGGACTGCTTTTTGTACATGTGATGTAATGCTGCAAATTATCTATGTATTTGCAGGACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATGAGATTATAAAGAAGGTAAGGTATTCTAGAGGACGTTGATGTAGTTAGTACTCAACTTATCAACAGGAATTAGTTATAGGAATTTACTCTATTAGACGGAGACTGCATTTTTAAACAACTAGTTTTTGTCTCATATTTAAAAGTTCTAAAGTTCTAATTTTGTATAGGCACA</genome_strand>
        <mrna_strand>ATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT.....................................................................................................................................................................................................CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAG........................................................................................................................GACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATGAGATTATAAAGAAGGTAAGGTATTCTAGAGGACGTTGATGTAGTTAGTACTCAACTTATCAACAGGAATTAGTTATAGGAATTTACTCTATTAGACGGAGACTGCATTTTTAAACAACTAGTTTTTGTCTCATATTTAAAAGTTCTAAAGTTCTAATTTTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577733" ref_strand="-" ref_description="SGN-E577733 [LE15CE04]">
      <seq>tgctacttttttttggttggtggctctctattttcctttctccctctcaaattgatgatgatattttgtggaactccttttgtttctagcgtatcgctgcttgtgaaaaggatgagcattacagtgggatgaaaattgttgagctagagaatgatgtagaggtgaatgactgctctgaagacaattcagatgataatgtggtgactgtacccacccaaaaaggaggaatgaggagaaaacatcatcgaccttggactatcaatgaggttgttaagctagtggaaggtgtagccaggtatggtgctggtaaatggtctgagataaaacggcttgctttttcagcttgcccttatcgaacttcggtggacctgaaggacaagtggagaaatctgctaaaagctagttttgtgcagttgcctgcagaaaaagggattctgaattcccggaaacaggcttcagttccgatccctgcgccaattctctcacgtgtgagagagcttgctgatatgcaaggtcagatcccaccagttcttagtgtatgcaagtcaagtggacatagtagtagcgatagaaaagaacatgaagctaggtctggattcctgtaatttcaacttcatagaaaggtttgtttttttggaataagtccgatggtgattggcaaacagttcactaagcattatatttcatgtgctaatgctactttttgtgtactcaaccttttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133262" stop="135618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133562" g_stop="133936" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134057" g_stop="134113" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="431" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134114" i_stop="135020" i_length="907">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135021" g_stop="135311" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="721" r_length="290" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="734"/>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E577733" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133562" e_stop="133936"/>
          <exon e_start="134057" e_stop="134113"/>
          <exon e_start="135021" e_stop="135311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAGGTTGGTATTGGCTTGTCTATTTAATAGAATCTAGTAATTGGAATTCATTGGGAATAAATTAGTCCGGGACTGCTTTTTGTACATGTGATGTAATGCTGCAAATTATCTATGTATTTGCAGGACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATGAGATTATAAAGAAGGTAAGGTATTCTAGAGGACGTTGATGTAGTTAGTACTCAACTTATCAACAGGAATTAGTTATAGGAATTTACTCTATTAGACGGAGACTGCATTTTTAAACAACTAGTTTTTGTCTCATATTTAAAAGTTCTAAAGTTCTAATTTTGTATAGGCACAGAAAGAGGGGGGGGGGGGGGGAGCTGGTGGGCTTTGTTTCTGTATTTGTTTACTATCTGAAGATCTAAGTTGCATGGGCTCTTCACTTTTGGTGCCGCACCCGTGTCGAGACAACGTGGGTGTGGTTTTCGTGTTTTGGTCGACCGGTTTTGGCTACTTTGACCAAATTAGAGGGACAAATTCTGGAAAGCTTCAATGATTTCTGTAATAAAAAACTAAGGTGAAATTGAAGAAAATGGAATAACCTTATAATTGTCACTCCCTTTCCTTTTAACTACTTCCAAATTCTCATCTGCATCAATATTCTCCTAAACTTTTCCACATAATATCTCATAATTTAGGTTTAATAACTCTGCTTTTAGATATTTGAATTATTTTAAGCCAAGTCCCCGCACCCGTATCCATACATTAACCCTTATCCCCGAATCATAAATTTAGATCATAAAGGATCTGACCTCTAGATCAACACCCGTATCGGACATCTGCACCTGAGTTTGAGCAACTTAGCTGAGCCCCCCCCCCCCCCCCCCTCCTTTTTTTTTTTTGGAAACTATGGGACTGATCGTGGTATCCTTCTTAACTTCATATCTGTGATGGTGCAGATTCTGAATTCCCGGAAACAGGCTTCAGTTCCGATCCCTGCGCCAATTCTCTCACGTGTGAGAGAGCTTGCTGATATGCAAGGTCAGATCCCACCAGTTCTTAGTGTATGCAAGTCAAGTGGACATAGTAGTAGCGATAGAAGTGTACATGAAGCTAGGTCTGGATTCCTGTAATTTCAACTTCATAGAAAGGTTTGTTTTTTTGGAATAAGTCCGATGGTGATTGGCAAACAGTTCACTAAGCATTATATTTCATGTGCTAATGCTACTTTTTGTTTGATTCAACCTTTT</genome_strand>
        <mrna_strand>TGCTAC-TTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTACAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAG........................................................................................................................GACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAATTCCCGGAAACAGGCTTCAGTTCCGATCCCTGCGCCAATTCTCTCACGTGTGAGAGAGCTTGCTGATATGCAAGGTCAGATCCCACCAGTTCTTAGTGTATGCAAGTCAAGTGGACATAGTAGTAGCGATAGAAAAGAACATGAAGCTAGGTCTGGATTCCTGTAATTTCAACTTCATAGAAAGGTTTGTTTTTTTGGAATAAGTCCGATGGTGATTGGCAAACAGTTCACTAAGCATTATATTTCATGTGCTAATGCTACTTTTTGTGT-ACTCAACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577270" ref_strand="-" ref_description="SGN-E577270 [34259]">
      <seq>cttatcgaacttcggtggacctgaagggacaagtggagaaaatcctgctgaaagcctagtttttgtgcagttgcctgcagaaaaagggattctgaattcccggaaacaagcttcagttccgatccctgctgcaattctctcgcgtgtgagagagcttgctgatatgcaaggtcagatcccaccagttctcagtgcatgcaagtcaagtggacatagtagtagtgatagaagtgtacatgaacctaggtctggattcctgtaatttcaacatcataaaaaggctttgttttttttggaataagcccgatggtgattggcagacagttcactaaccatttatatttcttgtgctaatgctactttttgtgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="133611" stop="135606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133911" g_stop="133936" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134057" g_stop="134113" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="88" r_length="61" r_score="0.842"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134114" i_stop="135020" i_length="907">
            <donor d_prob="0.888" d_score="0.80"/>
            <acceptor a_prob="0.854" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135021" g_stop="135306" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="377" r_length="289" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E577270" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133911" e_stop="133936"/>
          <exon e_start="134057" e_stop="134113"/>
          <exon e_start="135021" e_stop="135306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCGAACTTCGGTGGACCTGAA-GGTTGGTATTGGCTTGTCTATTTAATAGAATCTAGTAATTGGAATTCATTGGGAATAAATTAGTCCGGGACTGCTTTTTGTACATGTGATGTAATGCTGCAAATTATCTATGTATTTGCAGGACAAGTGGAG-AAAT-CTGCTAAAAG-CTAG-TTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATGAGATTATAAAGAAGGTAAGGTATTCTAGAGGACGTTGATGTAGTTAGTACTCAACTTATCAACAGGAATTAGTTATAGGAATTTACTCTATTAGACGGAGACTGCATTTTTAAACAACTAGTTTTTGTCTCATATTTAAAAGTTCTAAAGTTCTAATTTTGTATAGGCACAGAAAGAGGGGGGGGGGGGGGGAGCTGGTGGGCTTTGTTTCTGTATTTGTTTACTATCTGAAGATCTAAGTTGCATGGGCTCTTCACTTTTGGTGCCGCACCCGTGTCGAGACAACGTGGGTGTGGTTTTCGTGTTTTGGTCGACCGGTTTTGGCTACTTTGACCAAATTAGAGGGACAAATTCTGGAAAGCTTCAATGATTTCTGTAATAAAAAACTAAGGTGAAATTGAAGAAAATGGAATAACCTTATAATTGTCACTCCCTTTCCTTTTAACTACTTCCAAATTCTCATCTGCATCAATATTCTCCTAAACTTTTCCACATAATATCTCATAATTTAGGTTTAATAACTCTGCTTTTAGATATTTGAATTATTTTAAGCCAAGTCCCCGCACCCGTATCCATACATTAACCCTTATCCCCGAATCATAAATTTAGATCATAAAGGATCTGACCTCTAGATCAACACCCGTATCGGACATCTGCACCTGAGTTTGAGCAACTTAGCTGAGCCCCCCCCCCCCCCCCCCTCCTTTTTTTTTTTTGGAAACTATGGGACTGATCGTGGTATCCTTCTTAACTTCATATCTGTGATGGTGCAGATTCTGAATTCCCGGAAACAGGCTTCAGTTCCGATCCCTGCGCCAATTCTCTCACGTGTGAGAGAGCTTGCTGATATGCAAGGTCAGATCCCACCAGTTCTTAGTGTATGCAAGTCAAGTGGACATAGTAGTAGCGATAGAAGTGTACATGAAGCTAGGTCTGGATTCCTGTAATTTCAACTTCATAGAAAGG-TTTG-TTTTTTTGGAATAAGTCCGATGGTGATTGGCAAACAGTTCACTAAGCA-TTATATTTCATGTGCTAATGCTACTTTTTGTTTGATTCAAC</genome_strand>
        <mrna_strand>CTTATCGAACTTCGGTGGACCTGAAGG........................................................................................................................GACAAGTGGAGAAAATCCTGCTGAAAGCCTAGTTTTTGTGCAGTTGCCTGCAGAAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAATTCCCGGAAACAAGCTTCAGTTCCGATCCCTGCTGCAATTCTCTCGCGTGTGAGAGAGCTTGCTGATATGCAAGGTCAGATCCCACCAGTTCTCAGTGCATGCAAGTCAAGTGGACATAGTAGTAGTGATAGAAGTGTACATGAACCTAGGTCTGGATTCCTGTAATTTCAACATCATAAAAAGGCTTTGTTTTTTTTGGAATAAGCCCGATGGTGATTGGCAGACAGTTCACTAACCATTTATATTTCTTGTGCTAATGCTACTTTTTGTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580260" ref_strand="+" ref_description="SGN-E580260 [5503]">
      <seq>gcctcttcctcgtcgggaacgggtggctcttcttctgctatcttttgcttccaactcactttatcggcggagaagcagaatccagtggcggctgccggaatctcagttgagctgcgtggttagaaataaactaaagaaccatggggattgtaagaggatcaaggaaattgaagccgagatggctcgtacccagaaaaataaagcaactgaatatcatttgggtcagctgaaggctaagatagcaaagctgaggacacaattgttagagccccccaaaggttctagtggtgctggagaaggttttgaagttacgaaatttgggcatggacgtgttgcactgataggatttccaagtgtgggaaaggtctacactcctttacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="136577" stop="139672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136876" g_stop="137001" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137002" i_stop="137841" i_length="840">
            <donor d_prob="0.884" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137842" g_stop="137926" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="209" r_length="84" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137927" i_stop="138999" i_length="1073">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139000" g_stop="139067" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="277" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139068" i_stop="139290" i_length="223">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139291" g_stop="139367" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="354" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="SGN-E580260" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136876" e_stop="137001"/>
          <exon e_start="137842" e_stop="137926"/>
          <exon e_start="139000" e_stop="139067"/>
          <exon e_start="139291" e_stop="139367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCTCCTCGTCGGCGAACGGCT-GCTCTTCTTCTGCTATCTTTTGCTTCCAACTTACTCAATCGGCGGAGAAGCAGAATCCAGTGGCCGGCCGCCGGAATCTCAATTGAGCTGCGTAGTTAGAAGTAAGAGCTGTTAAGTTCATAAAACTGCTTAGTTTATGCACAATTCCATTCCTATTGTTTTCTCTTTGTTAAATATTCTGCTAAATCACGCATTGACTTAAGCATACTGTCTCGTATTCTGAATTGAGCTTTTCTAGCTAAGTGGAATTTATTAAAAAAAAAAGGAGGTCAAATCGAATCGGTATATCCCAATGAGCCCGTAGGTTAATGTTGGTATGTTAGGTTATTTGCTAGTTGACATCTTTAATAACACTAAGATTTGAGTATGAAGAGTATTAATCACACAACTCATTTTTTGTGTAAGTATTGGTTAATTTCTGCTTTTACTTGCCTCCAATTTTTCCAATCTATATGTACTAGAGTCTAGAGTGGCCTCACAGTTTGATACTCCATTACTATCGCCTATTGTTTGATTTCTTTTATCTATTTGTATGATATGTCTATCCACTTTATGCTCACTCCTCGTTTTCGAACATTTTCTATTTAGTGGTTTCAAGTGGAAGTTAAAACATAACAAGTCCCATTTAATTCCCAACTCGTGTCCTGGATTTTTTTTTTGATCTTTTACTGCTTATAATTATAGTCCATTATAGCACAGAAAACCATTTCTCCTACTATTTTCCTCTGCATTAGTTCCATTTCTTAAATACATTATACATGTGACACGAACGACCTATGGGTCTGCCTTCCTTGTTCTGCTTGTCAGTCTTTTCACTGCAACATTTTTTTTCCTTAAAAAATTAGTTGTTCGGTTGTGTGTACTTTTCTTGAGCATCACTTTTGTCATGGGACTGTTTATTGGACTGAACTTGATCTTTTCTCTTCTATATGTTTATGCAGATAAACTAGAGAACCATGGGGATCGTAGAGAGGATCAAAGAAATTGAAGCCGAGATGGCTCGTACCCAGAAAAATAAAGCAACTGGTAACTTCCATAGTCTCATCACTAAAGCATTTATTGTACCTATAGGTTGTGTCTTATACTACTGGCTTATAATGTTGGTTTCACTTAGAGTTTAAGCTATAATTCAGACAAGAAATGCTATTATTGTTACTGAAGCCCCATTAGGCATCACCATCAATGAATCCTCATAGCCTCTCAGTCTTAGTGCACATTAATCAACATAAACACTCAGAAAGCCTACTTAGAGTCTGTTCAACATTGGTAGATTAGAACTATAGAGTTTTTAGTCCTAAAAAGGACACCATCTTCTTTAATGGGGCACCACTGGATATTCAAAATTCAGAAACGAGATTTCAAAGCTGGAATGTTGTCAAAAGAGATCACCCTTTGCCAATTAGCACAGGATTATATTTGTTTGTGACTCAACGATTTGTTACATTTTCGTCTTATGTATAGAAGAAAATAGCTTAAGCTGTATGCTTGGACAGTGTAAAGGTTTTCTTACACTAGTTAGTATTGTCATGACCTAAGTCCGTAGCACTTATTGTCTGTTATGGGCCTAGGGCGGCAGTGGCACAAATTTGTCTGTTTGGGCTACGCCACATCTAACCTCAAAAGTGTGCGTACCATGTGAACTTGATTTATGCTCAATAAAACTCTTCATTTTCCTCTCTGTGGGATTCACCCAAGGTGTAATGTGCACCTTATCTTCCAAAGCTTGCCAACCTAGAAGCGTGCCAATCCTGCTTGACCTGTCACTTGCCTCCGTCGGGGGCGTCACAAGTATATATTTAGTTATTATAGAAGGTTGTTTTCTATTTCTTGAAGGTTATAAATTGATCTCTATCAAGAAGCACCTGTCATTTCCTTCTAAGTTACATGATTGTATAAATATTTGTTTTACACCGACAATGCATATGACTTATACTCAATAAAAATTAGTTGTTACATTTCTTGGAGTTCCTTGGAGATCCATTCTTATGCTCTTAATTCCTTTGTGATTGAGGATCTTTAGTGAACTCCTCTCTGTTTGTTGAACTTTTCCCCAAATATTGTCTTCAGAAGCTTAATAATTGACTTCAATTGTCATGCAGAATATCATTTGGGTCAGCTGAAGGCTAAGATAGCAAAGCTGAGGACACAATTGTTAGAGCCCCCCAAAGTATGTCTTTTTTTGTATTTTAACTGTTAATTGGGAGGGGTCAATTTTCTGTTATCTTAGTCTCATGGAGTTCCCATGATATAATTGTGTCGTATATTACCATATCAACAATAAATAGTTGTACTCTACTAATTATTTTTTCCAGTGGCGACCACCTTTTCTCATGTTCTTGTGTTTTTCTGATAGACCAAGCAATAACTTCCTGATTACGCCTGTAAAATAGGGTTCTAGTGGTGCTGGAGAAGGTTTCGAAGTTACAAAATTTGGCCATGGACGTGTTGCACTGATAGGATTTCCAAG</genome_strand>
        <mrna_strand>GCCTCTTCCTCGTCGG-GAACGGGTGGCTCTTCTTCTGCTATCTTTTGCTTCCAACTCACTTTATCGGCGGAGAAGCAGAATCCAGTGG-CGGCTGCCGGAATCTCAGTTGAGCTGCGTGGTTAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTAAAGAACCATGGGGATTGTA-AGAGGATCAAGGAAATTGAAGCCGAGATGGCTCGTACCCAGAAAAATAAAGCAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATTTGGGTCAGCTGAAGGCTAAGATAGCAAAGCTGAGGACACAATTGTTAGAGCCCCCCAAA...............................................................................................................................................................................................................................GGTTCTAGTGGTGCTGGAGAAGGTTTTGAAGTTACGAAATTTGGGCATGGACGTGTTGCACTGATAGGATTTCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>131</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="424" PGL_stop="1930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="424" e_stop="486"/>
            <exon e_start="1112" e_stop="1248"/>
            <exon e_start="1551" e_stop="1930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.252" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="0.978"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="424" e_stop="486" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.252">
            <gDNA_intron_boundary i_start="487" i_stop="1111" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="1112" e_stop="1248" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="1249" i_stop="1550" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="1551" e_stop="1930" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="424" stop="486"/>
              <exon start="1112" stop="1248"/>
              <exon start="1551" stop="1930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1569" stop="1906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1589" stop="1915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAAGTTCACAAATGCATTGGCTGTCACTGTTGTTGTATCTGTTGGATGGATGTGCTATGAG : CTGTACTTCAAGTCCACTGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTCTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAG : ATATGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTAATGTGATCTCTCTTGCAATAATTC</gDNA_template>
            <first_frame> R  K  F  T  N  A  L  A  V  T  V  V  V  S  V  G  W  M  C  Y  E  :  L  Y  F  K  S  T  D  V  Y  N  E  R  W  R  N  A  W  I  I  P  A  F  W  Q  V  L  S  F  S  L  L  C  I  I  C  V  L  W  A  P  S  Q  N  S  M  R :   Y  A  Y  S  D  D  G  E  E  F  D  K  D  A  T  F  T  L  I  K  P  S  P  L  L  P  K  D  V  R  S  Q  P  E  V  R  P  T  L  G  N  S  E  L  S  N  G  E  V  V  E  D  K  T  E  *  S  K  T  H  N  F  F  T  V  R  *  R  K  V  P  V  R  L  S  K  L  F  L  E  S  C  Y  L  C  C  L  Y  K  K  S  T  N  V  N  Q  E  K  S  F  R  *  N  K  L  V  I  V  V  F  F  R  S  N  V  H  *  S  N  V  I  S  L  A  I  I  </first_frame>
            <second_frame>  A  S  S  Q  M  H  W  L  S  L  L  L  Y  L  L  D  G  C  A  M  S :   C  T  S  S  P  L  M  C  T  M  S  D  G  E  M  P  G  L  F  L  P  S  G  K  C  Y  L  S  L  S  F  A  S  S  A  F  F  G  H  H  L  K  T  P  *   : D  M  P  T  L  M  M  V  K  S  S  I  R  T  L  H  L  R  S  *  S  R  P  L  C  C  Q  R  M  *  E  A  N  L  K  *  G  Q  H  W  V  T  A  N  Y  L  M  V  K  L  *  K  T  R  P  S  K  A  R  H  T  T  F  L  Q  Y  V  K  E  R  Y  P  S  D  *  V  N  C  F  *  N  H  V  I  Y  V  V  C  I  K  K  V  R  M  L  I  R  R  S  L  L  G  K  T  N  L  *  L  L  F  F  L  E  V  M  F  I  N  L  M  *  S  L  L  Q  *  F </second_frame>
            <third_frame>   Q  V  H  K  C  I  G  C  H  C  C  C  I  C  W  M  D  V  L  *   : A  V  L  Q  V  H  *  C  V  Q  *  A  M  A  K  C  L  D  Y  S  C  L  L  A  S  A  I  F  L  S  P  L  H  H  L  R  S  L  G  T  I  S  K  L  H  E  :  I  C  L  L  *  *  W  *  R  V  R  *  G  R  Y  I  Y  A  H  K  A  V  P  S  A  A  K  G  C  K  K  P  T  *  S  E  A  N  I  G  *  Q  R  T  I  *  W  *  S  C  R  R  Q  D  R  V  K  Q  D  T  Q  L  F  Y  S  T  L  K  K  G  T  R  Q  T  E  *  I  V  F  R  I  M  L  S  M  L  S  V  *  K  K  Y  E  C  *  S  G  E  V  F  *  V  K  Q  T  C  N  C  C  F  F  *  K  *  C  S  L  I  *  C  D  L  S  C  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="424" stop="486"/>
                    <exon start="1112" stop="1248"/>
                    <exon start="1551" stop="1719"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFTNALAVTVVVSVGWMCYELYFKSTDVYNERWRNAWIIPAFWQVLSFSLLCIICVLWAPSQNSMRYAYSDDGEEFDKDATFTLIKPSPLLPKDVRSQPEVRPTLGNSELSNGEVVEDKTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="432" e_stop="486"/>
            <exon e_start="1112" e_stop="1248"/>
            <exon e_start="1492" e_stop="1915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.252" e_score="0.709"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.709">
            <gDNA_exon_boundary e_start="432" e_stop="486" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.252">
            <gDNA_intron_boundary i_start="487" i_stop="1111" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1112" e_stop="1248" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1249" i_stop="1491" i_length="243"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="1492" e_stop="1915" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="432" stop="486"/>
              <exon start="1112" stop="1248"/>
              <exon start="1492" stop="1906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1569" stop="1906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1589" stop="1915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAATGCATTGGCTGTCACTGTTGTTGTATCTGTTGGATGGATGTGCTATGAG : CTGTACTTCAAGTCCACTGATGTGTACAATGAGCGATGGCGAAATGCCTGGATTATTCCTGCCTTCTGGCAAGTGCTATCTTTCTCTCTCCTTTGCATCATCTGCGTTCTTTGGGCACCATCTCAAAACTCCATGAG : TCTTTTCTCAGACGCGAATCTCAACTCTCACTGGTTTATTTTAAATGCTTACATAACAGATATGCCTACTCTGATGATGGTGAAGAGTTCGATAAGGACGCTACATTTACGCTCATAAAGCCGTCCCCTCTGCTGCCAAAGGATGTAAGAAGCCAACCTGAAGTGAGGCCAACATTGGGTAACAGCGAACTATCTAATGGTGAAGTTGTAGAAGACAAGACCGAGTAAAGCAAGACACACAACTTTTTTACAGTACGTTAAAGAAAGGTACCCGTCAGACTGAGTAAATTGTTTTTAGAATCATGTTATCTATGTTGTCTGTATAAAAAAAGTACGAATGTTAATCAGGAGAAGTCTTTTAGGTAAAACAAACTTGTAATTGTTGTTTTTTTTAGAAGTAATGTTCATTAATCTAATGTGATCT</gDNA_template>
            <first_frame> H  K  C  I  G  C  H  C  C  C  I  C  W  M  D  V  L  *   : A  V  L  Q  V  H  *  C  V  Q  *  A  M  A  K  C  L  D  Y  S  C  L  L  A  S  A  I  F  L  S  P  L  H  H  L  R  S  L  G  T  I  S  K  L  H  E  :  S  F  L  R  R  E  S  Q  L  S  L  V  Y  F  K  C  L  H  N  R  Y  A  Y  S  D  D  G  E  E  F  D  K  D  A  T  F  T  L  I  K  P  S  P  L  L  P  K  D  V  R  S  Q  P  E  V  R  P  T  L  G  N  S  E  L  S  N  G  E  V  V  E  D  K  T  E  *  S  K  T  H  N  F  F  T  V  R  *  R  K  V  P  V  R  L  S  K  L  F  L  E  S  C  Y  L  C  C  L  Y  K  K  S  T  N  V  N  Q  E  K  S  F  R  *  N  K  L  V  I  V  V  F  F  R  S  N  V  H  *  S  N  V  I  </first_frame>
            <second_frame>  T  N  A  L  A  V  T  V  V  V  S  V  G  W  M  C  Y  E  :  L  Y  F  K  S  T  D  V  Y  N  E  R  W  R  N  A  W  I  I  P  A  F  W  Q  V  L  S  F  S  L  L  C  I  I  C  V  L  W  A  P  S  Q  N  S  M  S :   L  F  S  D  A  N  L  N  S  H  W  F  I  L  N  A  Y  I  T  D  M  P  T  L  M  M  V  K  S  S  I  R  T  L  H  L  R  S  *  S  R  P  L  C  C  Q  R  M  *  E  A  N  L  K  *  G  Q  H  W  V  T  A  N  Y  L  M  V  K  L  *  K  T  R  P  S  K  A  R  H  T  T  F  L  Q  Y  V  K  E  R  Y  P  S  D  *  V  N  C  F  *  N  H  V  I  Y  V  V  C  I  K  K  V  R  M  L  I  R  R  S  L  L  G  K  T  N  L  *  L  L  F  F  L  E  V  M  F  I  N  L  M  *  S </second_frame>
            <third_frame>   Q  M  H  W  L  S  L  L  L  Y  L  L  D  G  C  A  M  S :   C  T  S  S  P  L  M  C  T  M  S  D  G  E  M  P  G  L  F  L  P  S  G  K  C  Y  L  S  L  S  F  A  S  S  A  F  F  G  H  H  L  K  T  P  *   : V  F  S  Q  T  R  I  S  T  L  T  G  L  F  *  M  L  T  *  Q  I  C  L  L  *  *  W  *  R  V  R  *  G  R  Y  I  Y  A  H  K  A  V  P  S  A  A  K  G  C  K  K  P  T  *  S  E  A  N  I  G  *  Q  R  T  I  *  W  *  S  C  R  R  Q  D  R  V  K  Q  D  T  Q  L  F  Y  S  T  L  K  K  G  T  R  Q  T  E  *  I  V  F  R  I  M  L  S  M  L  S  V  *  K  K  Y  E  C  *  S  G  E  V  F  *  V  K  Q  T  C  N  C  C  F  F  *  K  *  C  S  L  I  *  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1144" stop="1248"/>
                    <exon start="1492" stop="1719"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMAKCLDYSCLLASAIFLSPLHHLRSLGTISKLHESFLRRESQLSLVYFKCLHNRYAYSDDGEEFDKDATFTLIKPSPLLPKDVRSQPEVRPTLGNSELSNGEVVEDKTE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="433" stop="486"/>
                    <exon start="1112" stop="1248"/>
                    <exon start="1492" stop="1609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNALAVTVVVSVGWMCYELYFKSTDVYNERWRNAWIIPAFWQVLSFSLLCIICVLWAPSQNSMSLFSDANLNSHWFILNAYITDMPTLMMVKSSIRTLHLRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4406" PGL_stop="3642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4406" e_stop="3642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="4406" e_stop="3642" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4406" stop="3642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4187" stop="3704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366500" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGGGTGAAGGTTTTGCATTGTTTGAGAGATGAGGGACTACATGTGAGTGGCAGTTTTTCATCGGGGGTGTCAAAGAGTGCATTGAGAGAGCGTTTCAAGACGTTCAACGCGTTGTTTGAAGAGGTGCACAGGACTCAGTCCACATGGTTGATACCAGATACACAGCTCAGGGAGGAGCTGCGCATTTCCATAGCCGAAAAGTTGATTCCTGCCTATAGATCATTTCTTGGACGATTCAGGAGCCATATAGAAAGCGGAAGGCATCCAGAAAACTATATCAAGTATACTGTGGAGGACCTAGAGAATGCTGTCTTAGATTTCTTTGAGGGGTACGCTGTGTCACAGCACCTAAGAAGAAGATCTCAGTGAAAGAATATTAGTTTCAACAGTTAGTTCTTTAGGCCATTCTTTGAATTTTTTTCATGGAGTTATTCAGGGGCTGAGGTTACGGCATTCTGGTGTTTCTCGAGTTTCTACTTCCATTTCTAGTATTCCAGGGTGATTGGCTGCTGAAAACTTCAGGAAGATCAACTGTTATCAATCAAGAAGGGTCAGTGCCTCCTGCCTCTGGATGCTCTGCCCTGTAAGCATGTTGTTGTTGTATTTCTTCCATACTTCTAGACTTCATTTCAATTTGTCCATATCTGAACTGTTGTGTTGATTACTTTCTTGAAATTTTATCATTATCATGATTTTGTTAACTTGAGTCCAGAATTTAGTTTAGCTTGGATGACTTCTACACTGCAACGATATTGTTCTTTGG</gDNA_template>
            <first_frame> P  G  *  R  F  C  I  V  *  E  M  R  D  Y  M  *  V  A  V  F  H  R  G  C  Q  R  V  H  *  E  S  V  S  R  R  S  T  R  C  L  K  R  C  T  G  L  S  P  H  G  *  Y  Q  I  H  S  S  G  R  S  C  A  F  P  *  P  K  S  *  F  L  P  I  D  H  F  L  D  D  S  G  A  I  *  K  A  E  G  I  Q  K  T  I  S  S  I  L  W  R  T  *  R  M  L  S  *  I  S  L  R  G  T  L  C  H  S  T  *  E  E  D  L  S  E  R  I  L  V  S  T  V  S  S  L  G  H  S  L  N  F  F  H  G  V  I  Q  G  L  R  L  R  H  S  G  V  S  R  V  S  T  S  I  S  S  I  P  G  *  L  A  A  E  N  F  R  K  I  N  C  Y  Q  S  R  R  V  S  A  S  C  L  W  M  L  C  P  V  S  M  L  L  L  Y  F  F  H  T  S  R  L  H  F  N  L  S  I  S  E  L  L  C  *  L  L  S  *  N  F  I  I  I  M  I  L  L  T  *  V  Q  N  L  V  *  L  G  *  L  L  H  C  N  D  I  V  L  W </first_frame>
            <second_frame>  L  G  E  G  F  A  L  F  E  R  *  G  T  T  C  E  W  Q  F  F  I  G  G  V  K  E  C  I  E  R  A  F  Q  D  V  Q  R  V  V  *  R  G  A  Q  D  S  V  H  M  V  D  T  R  Y  T  A  Q  G  G  A  A  H  F  H  S  R  K  V  D  S  C  L  *  I  I  S  W  T  I  Q  E  P  Y  R  K  R  K  A  S  R  K  L  Y  Q  V  Y  C  G  G  P  R  E  C  C  L  R  F  L  *  G  V  R  C  V  T  A  P  K  K  K  I  S  V  K  E  Y  *  F  Q  Q  L  V  L  *  A  I  L  *  I  F  F  M  E  L  F  R  G  *  G  Y  G  I  L  V  F  L  E  F  L  L  P  F  L  V  F  Q  G  D  W  L  L  K  T  S  G  R  S  T  V  I  N  Q  E  G  S  V  P  P  A  S  G  C  S  A  L  *  A  C  C  C  C  I  S  S  I  L  L  D  F  I  S  I  C  P  Y  L  N  C  C  V  D  Y  F  L  E  I  L  S  L  S  *  F  C  *  L  E  S  R  I  *  F  S  L  D  D  F  Y  T  A  T  I  L  F  F   </second_frame>
            <third_frame>   W  V  K  V  L  H  C  L  R  D  E  G  L  H  V  S  G  S  F  S  S  G  V  S  K  S  A  L  R  E  R  F  K  T  F  N  A  L  F  E  E  V  H  R  T  Q  S  T  W  L  I  P  D  T  Q  L  R  E  E  L  R  I  S  I  A  E  K  L  I  P  A  Y  R  S  F  L  G  R  F  R  S  H  I  E  S  G  R  H  P  E  N  Y  I  K  Y  T  V  E  D  L  E  N  A  V  L  D  F  F  E  G  Y  A  V  S  Q  H  L  R  R  R  S  Q  *  K  N  I  S  F  N  S  *  F  F  R  P  F  F  E  F  F  S  W  S  Y  S  G  A  E  V  T  A  F  W  C  F  S  S  F  Y  F  H  F  *  Y  S  R  V  I  G  C  *  K  L  Q  E  D  Q  L  L  S  I  K  K  G  Q  C  L  L  P  L  D  A  L  P  C  K  H  V  V  V  V  F  L  P  Y  F  *  T  S  F  Q  F  V  H  I  *  T  V  V  L  I  T  F  L  K  F  Y  H  Y  H  D  F  V  N  L  S  P  E  F  S  L  A  W  M  T  S  T  L  Q  R  Y  C  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4404" stop="4036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVKVLHCLRDEGLHVSGSFSSGVSKSALRERFKTFNALFEEVHRTQSTWLIPDTQLREELRISIAEKLIPAYRSFLGRFRSHIESGRHPENYIKYTVEDLENAVLDFFEGYAVSQHLRRRSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27485" PGL_stop="29758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27485" e_stop="27824"/>
            <exon e_start="28108" e_stop="28255"/>
            <exon e_start="28503" e_stop="28939"/>
            <exon e_start="29245" e_stop="29302"/>
            <exon e_start="29406" e_stop="29758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27485" e_stop="27824" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27825" i_stop="28107" i_length="283"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28108" e_stop="28255" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28256" i_stop="28502" i_length="247"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28503" e_stop="28939" e_length="437"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="28940" i_stop="29244" i_length="305"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29245" e_stop="29302" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29303" i_stop="29405" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="29406" e_stop="29758" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27485" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27550" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27550" stop="27795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27550" stop="27775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27551" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27571" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27589" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27747" stop="27824"/>
              <exon start="28108" stop="28255"/>
              <exon start="28503" stop="28934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28223" stop="28255"/>
              <exon start="28503" stop="28939"/>
              <exon start="29245" stop="29302"/>
              <exon start="29406" stop="29604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28528" stop="28939"/>
              <exon start="29245" stop="29302"/>
              <exon start="29406" stop="29618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28723" stop="28939"/>
              <exon start="29245" stop="29302"/>
              <exon start="29406" stop="29501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28812" stop="28939"/>
              <exon start="29245" stop="29302"/>
              <exon start="29406" stop="29758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291671" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28813" stop="28939"/>
              <exon start="29245" stop="29302"/>
              <exon start="29406" stop="29749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTCCTTTATCTACCCCATCTTATCATCTCTATTCTCTACCATAACATTCACATGTTCCTTCCACTTGCTTCCTTTTTCTTCTTCACTACTACATAACTTCTCTAGCTACCCTAAAATTGTCACAATCCTTAATTTCTGTTTCTATCAATTTTGGATTTTTTTTCTCATCGGCAGATATGTCGAATTTATGTGACGCTCGCCGGAGGAATGGAAACGGCAAGGCGCCGGAGAGATCAAGTTTCGTACAGACTTGTAACTTGTTGAGTCAGTTTATTAAAGGGAAAGCTACTATTAGAGATCTGAATCTCGGAATCGCCGGTCAGCCGGAAGCTGCAG : GGAAAACTGAAACTGCAACTATGGATTTATTAACAGTCATGGAAAAACCATCTATTGATCTAACAAAAGAAGAACACAAATCCGTAGATCTTGTTACAACAGAGTCTTCTAGAGAGAAGGAGGCCGCTGTAAATGAGCCCAGCACAAG : CAAAGAGGCACCAAAGGAGCCTAAGGCAGCCCAATTGACTATGTTCTATGATGGTAAAGTGATTGTTTTTGATGATTTCCCTGCTGACAAAGCTAGAGCAGTGATGTTATTGGCTAGTAAAGGATGTCCTCAGAGTTCATTTGGGACTTTCCAGGCTATAAACATCGACAAAATTAACACATGTTCTCCTGCCCCTGCTTCTTTGACAAGTAATAGAACTGATTCTGTTGCACCACAGCAACAACACCTCCAGATTAAGCCAGACTCTTGCTCTGCTGCACCGCAACAGCACAAGCACAATTCGCCCCCACTCCATGTTTGTAGTAGTACTAAAACTGATCAGCTTAAGCTCGGATCAGTTTCATCTGCACCCTTAGTAGAGCAGGAGCAACACAAGCAAATCCAGTCACAGGCTGCCGAAATTAGCAGCAGCTCCG : AGCTACCTATCGCAAGAAGATCTTCACTTCATAGGTTTCTCGAGAAGAGGAAAGATAG : GGCAACTGTTAGAGCTCCATACCAAGTTGTACGTAACAATCCGTTGTTACCATCTTCTTCGAATACTAATGGTGAATCATCTTCTAAGGATAGCGAAGATCAGCTCGATCTCAATTTCAAGTTATAGCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAGTAGTATTAATATATATTTAGATCAGTGATTTGAAGATTATTTTTCCAGCTCAGCTTAGCTTACAGATTATATTTCTTGTATTAGATATCGTTTATTATTACCAACTGAATATTATGACTTTTTTGGTTGTTAAAATAGAATGTGTAATTAATCTTTG</gDNA_template>
            <first_frame> *  F  P  L  S  T  P  S  Y  H  L  Y  S  L  P  *  H  S  H  V  P  S  T  C  F  L  F  L  L  H  Y  Y  I  T  S  L  A  T  L  K  L  S  Q  S  L  I  S  V  S  I  N  F  G  F  F  F  S  S  A  D  M  S  N  L  C  D  A  R  R  R  N  G  N  G  K  A  P  E  R  S  S  F  V  Q  T  C  N  L  L  S  Q  F  I  K  G  K  A  T  I  R  D  L  N  L  G  I  A  G  Q  P  E  A  A   : G  K  T  E  T  A  T  M  D  L  L  T  V  M  E  K  P  S  I  D  L  T  K  E  E  H  K  S  V  D  L  V  T  T  E  S  S  R  E  K  E  A  A  V  N  E  P  S  T  S :   K  E  A  P  K  E  P  K  A  A  Q  L  T  M  F  Y  D  G  K  V  I  V  F  D  D  F  P  A  D  K  A  R  A  V  M  L  L  A  S  K  G  C  P  Q  S  S  F  G  T  F  Q  A  I  N  I  D  K  I  N  T  C  S  P  A  P  A  S  L  T  S  N  R  T  D  S  V  A  P  Q  Q  Q  H  L  Q  I  K  P  D  S  C  S  A  A  P  Q  Q  H  K  H  N  S  P  P  L  H  V  C  S  S  T  K  T  D  Q  L  K  L  G  S  V  S  S  A  P  L  V  E  Q  E  Q  H  K  Q  I  Q  S  Q  A  A  E  I  S  S  S  S   : E  L  P  I  A  R  R  S  S  L  H  R  F  L  E  K  R  K  D  R :   A  T  V  R  A  P  Y  Q  V  V  R  N  N  P  L  L  P  S  S  S  N  T  N  G  E  S  S  S  K  D  S  E  D  Q  L  D  L  N  F  K  L  *  P  E  L  H  S  R  S  W  N  S  I  S  F  F  L  V  D  H  H  C  M  S  *  *  Y  *  Y  I  F  R  S  V  I  *  R  L  F  F  Q  L  S  L  A  Y  R  L  Y  F  L  Y  *  I  S  F  I  I  T  N  *  I  L  *  L  F  W  L  L  K  *  N  V  *  L  I  F  </first_frame>
            <second_frame>  N  F  L  Y  L  P  H  L  I  I  S  I  L  Y  H  N  I  H  M  F  L  P  L  A  S  F  F  F  F  T  T  T  *  L  L  *  L  P  *  N  C  H  N  P  *  F  L  F  L  S  I  L  D  F  F  S  H  R  Q  I  C  R  I  Y  V  T  L  A  G  G  M  E  T  A  R  R  R  R  D  Q  V  S  Y  R  L  V  T  C  *  V  S  L  L  K  G  K  L  L  L  E  I  *  I  S  E  S  P  V  S  R  K  L  Q  :  G  K  L  K  L  Q  L  W  I  Y  *  Q  S  W  K  N  H  L  L  I  *  Q  K  K  N  T  N  P  *  I  L  L  Q  Q  S  L  L  E  R  R  R  P  L  *  M  S  P  A  Q   : A  K  R  H  Q  R  S  L  R  Q  P  N  *  L  C  S  M  M  V  K  *  L  F  L  M  I  S  L  L  T  K  L  E  Q  *  C  Y  W  L  V  K  D  V  L  R  V  H  L  G  L  S  R  L  *  T  S  T  K  L  T  H  V  L  L  P  L  L  L  *  Q  V  I  E  L  I  L  L  H  H  S  N  N  T  S  R  L  S  Q  T  L  A  L  L  H  R  N  S  T  S  T  I  R  P  H  S  M  F  V  V  V  L  K  L  I  S  L  S  S  D  Q  F  H  L  H  P  *  *  S  R  S  N  T  S  K  S  S  H  R  L  P  K  L  A  A  A  P  :  S  Y  L  S  Q  E  D  L  H  F  I  G  F  S  R  R  G  K  I   : G  Q  L  L  E  L  H  T  K  L  Y  V  T  I  R  C  Y  H  L  L  R  I  L  M  V  N  H  L  L  R  I  A  K  I  S  S  I  S  I  S  S  Y  S  Q  N  S  T  L  A  V  G  I  P  *  A  F  F  W  L  T  T  T  A  *  A  S  S  I  N  I  Y  L  D  Q  *  F  E  D  Y  F  S  S  S  A  *  L  T  D  Y  I  S  C  I  R  Y  R  L  L  L  P  T  E  Y  Y  D  F  F  G  C  *  N  R  M  C  N  *  S  L </second_frame>
            <third_frame>   I  S  F  I  Y  P  I  L  S  S  L  F  S  T  I  T  F  T  C  S  F  H  L  L  P  F  S  S  S  L  L  H  N  F  S  S  Y  P  K  I  V  T  I  L  N  F  C  F  Y  Q  F  W  I  F  F  L  I  G  R  Y  V  E  F  M  *  R  S  P  E  E  W  K  R  Q  G  A  G  E  I  K  F  R  T  D  L  *  L  V  E  S  V  Y  *  R  E  S  Y  Y  *  R  S  E  S  R  N  R  R  S  A  G  S  C  R :   E  N  *  N  C  N  Y  G  F  I  N  S  H  G  K  T  I  Y  *  S  N  K  R  R  T  Q  I  R  R  S  C  Y  N  R  V  F  *  R  E  G  G  R  C  K  *  A  Q  H  K  :  Q  R  G  T  K  G  A  *  G  S  P  I  D  Y  V  L  *  W  *  S  D  C  F  *  *  F  P  C  *  Q  S  *  S  S  D  V  I  G  *  *  R  M  S  S  E  F  I  W  D  F  P  G  Y  K  H  R  Q  N  *  H  M  F  S  C  P  C  F  F  D  K  *  *  N  *  F  C  C  T  T  A  T  T  P  P  D  *  A  R  L  L  L  C  C  T  A  T  A  Q  A  Q  F  A  P  T  P  C  L  *  *  Y  *  N  *  S  A  *  A  R  I  S  F  I  C  T  L  S  R  A  G  A  T  Q  A  N  P  V  T  G  C  R  N  *  Q  Q  L  R :   A  T  Y  R  K  K  I  F  T  S  *  V  S  R  E  E  E  R  *  :  G  N  C  *  S  S  I  P  S  C  T  *  Q  S  V  V  T  I  F  F  E  Y  *  W  *  I  I  F  *  G  *  R  R  S  A  R  S  Q  F  Q  V  I  A  R  T  P  L  S  Q  L  E  F  H  K  L  F  F  G  *  P  P  L  H  E  L  V  V  L  I  Y  I  *  I  S  D  L  K  I  I  F  P  A  Q  L  S  L  Q  I  I  F  L  V  L  D  I  V  Y  Y  Y  Q  L  N  I  M  T  F  L  V  V  K  I  E  C  V  I  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27533" stop="27824"/>
                    <exon start="28108" stop="28255"/>
                    <exon start="28503" stop="28939"/>
                    <exon start="29245" stop="29302"/>
                    <exon start="29406" stop="29532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSHVPSTCFLFLLHYYITSLATLKLSQSLISVSINFGFFFSSADMSNLCDARRRNGNGKAPERSSFVQTCNLLSQFIKGKATIRDLNLGIAGQPEAAGKTETATMDLLTVMEKPSIDLTKEEHKSVDLVTTESSREKEAAVNEPSTSKEAPKEPKAAQLTMFYDGKVIVFDDFPADKARAVMLLASKGCPQSSFGTFQAINIDKINTCSPAPASLTSNRTDSVAPQQQHLQIKPDSCSAAPQQHKHNSPPLHVCSSTKTDQLKLGSVSSAPLVEQEQHKQIQSQAAEISSSSELPIARRSSLHRFLEKRKDRATVRAPYQVVRNNPLLPSSSNTNGESSSKDSEDQLDLNFKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32079" PGL_stop="36630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32079" e_stop="32311"/>
            <exon e_start="33799" e_stop="33851"/>
            <exon e_start="34048" e_stop="34150"/>
            <exon e_start="34329" e_stop="34405"/>
            <exon e_start="34483" e_stop="34544"/>
            <exon e_start="34650" e_stop="34737"/>
            <exon e_start="34893" e_stop="34968"/>
            <exon e_start="35055" e_stop="35085"/>
            <exon e_start="35245" e_stop="35361"/>
            <exon e_start="35523" e_stop="35608"/>
            <exon e_start="35766" e_stop="35942"/>
            <exon e_start="36148" e_stop="36630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.944"/>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.974"/>
          <exon-intron don_prob="0.808" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.589" acc_prob="0.929" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.968"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.919"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="0.983"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="32079" e_stop="32311" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32312" i_stop="33798" i_length="1487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33799" e_stop="33851" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="33852" i_stop="34047" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="34048" e_stop="34150" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34151" i_stop="34328" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="34329" e_stop="34405" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34406" i_stop="34482" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="34483" e_stop="34544" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.808" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34545" i_stop="34649" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="34650" e_stop="34737" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.589" acc_prob="0.929">
            <gDNA_intron_boundary i_start="34738" i_stop="34892" i_length="155"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34893" e_stop="34968" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34969" i_stop="35054" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="0.968">
            <gDNA_exon_boundary e_start="35055" e_stop="35085" e_length="31"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35086" i_stop="35244" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35245" e_stop="35361" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35362" i_stop="35522" i_length="161"/>
          </intron>
          <exon e_serial="10" e_score="0.919">
            <gDNA_exon_boundary e_start="35523" e_stop="35608" e_length="86"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35609" i_stop="35765" i_length="157"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="35766" e_stop="35942" e_length="177"/>
          </exon>
          <intron i_serial="11" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35943" i_stop="36147" i_length="205"/>
          </intron>
          <exon e_serial="12" e_score="0.952">
            <gDNA_exon_boundary e_start="36148" e_stop="36630" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32079" stop="32311"/>
              <exon start="33799" stop="33851"/>
              <exon start="34048" stop="34150"/>
              <exon start="34329" stop="34405"/>
              <exon start="34483" stop="34544"/>
              <exon start="34650" stop="34737"/>
              <exon start="34893" stop="34968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33799" stop="33851"/>
              <exon start="34048" stop="34150"/>
              <exon start="34329" stop="34405"/>
              <exon start="34483" stop="34544"/>
              <exon start="34650" stop="34737"/>
              <exon start="34893" stop="34968"/>
              <exon start="35055" stop="35085"/>
              <exon start="35245" stop="35295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34692" stop="34737"/>
              <exon start="34893" stop="34968"/>
              <exon start="35055" stop="35085"/>
              <exon start="35245" stop="35361"/>
              <exon start="35523" stop="35608"/>
              <exon start="35766" stop="35942"/>
              <exon start="36148" stop="36428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35883" stop="35942"/>
              <exon start="36148" stop="36628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35883" stop="35942"/>
              <exon start="36148" stop="36627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35912" stop="35942"/>
              <exon start="36148" stop="36630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422604" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36322" stop="36616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTTCTTTTTTTTCTTTTTTTTTTCTTCTTCTTCTCGGAGACCTTCTTCTATATCACCGCGAGGACACAGGAAATCCAATCACGCCGGTAATTATTTCTCCGATCTCGGAGTAGTAGTTGAGAAAATGCTGAATCATAGGCTAAAACAAGAACAACAACAAGCCTTGATGCAGCAAGCTCTTCTTCAACAACAGTCACTCTATCACCCTGGCCTTATAGCTGCTCCTCAG : ATACCAAGTGGAAATCTACCTCCTGGGTTTGATCCAAGTACATGCCGCAGCGT : GTATATTGGGAATATTCACCCCCAGGTGTCTGAAACTCTTCTTCATGAACTTTTTTCATGTACTGGTCTGGTTGAAGGGTGCAAACTTGTAAGGAAGGACAAG : TCATCTTATGGCTTTGTTCATTATTATGACCGTAGGTCTGCTGAACTTGCTATAGTTACTCAAAATGGAAGGCACCT : GTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCCAGTGGACAGAGGGAGGATACTTCAA : GTCACTTCAATGTATTTGTTGGTGATCTGAGCCCAGAAGTTACTGATGCCATGTTGTTTGCTTGCTTCTCTGTTTACCCTAGTTGCTC : TGATGCTAGGGTAATGTGGGATCAGCAGACTGGGCGTTCTAGGGGTTTTGGATTTGTTTCTTTCCGGAACCAACAG : GATGCCCAAAGTGCAATTAATGATTTAACTG : GGAAATGGCTTGGTAGTAGACAGATACGTTGTAACTGGGCTACAAAAGGAGCTAATTCTAATGATGAGCAAGGCTCAGAAATCAGAAGTGTCGTGGAATTAACTAATGGATCATCAG : AAGATGGTAAAGATCCAGCAAGTAGTGATGCTCCTGAAAACAACCCGCAATATACAACTGTTTATGTGGGTAATCTTGCTCCTGAG : GCGACACAACTCGATCTCCATCGCCACTTTTATGTCATTGGTGCAGGAGTGATAGAGGAAGTTCGGGTTCAACGTGATAAAGGATTTGGTTTTGTAAGATACAGCACCCATGATGAGGCAGCTTTGGCAATTCAAATGGGAAATGCCCAATCAATTTTGTGTGGGAGACAGATTAAG : TGTTCTTGGGGTAACAAACCAACACCACCTGGAACAGCCTCAAATCCTCTTCCACCACCAGCTGCAGCGCCATTAGGCCTTACTGCCACTGATCTTTTGACTTATGAACGGCAGCTAGCTATGAGTAAGATGGCTGGTGTTCATGCCCTCATGCAATCTCAGGGTCAACATCCCCTGAAGCAAGCATCAATGGGAATGAGTGCTTCTGGAGCAAGCCAGGCTATATATGATGGTGGTTTCCAGAATCTTGCTGCTCAGCAGCTCATGTATTACCAGTAATGTGCAGAAATATGGCTTGACATTTCGTTGCCTTTCGTTTAGACTAGATGAGTTTTTATAAATGTCTAGATTTTCTTGTATTCTGTTCTCGAAATCAAGGCTTGGTATGCGGTACTCACATGTAAGAATATTATGAGGTGAACATTTTATGTCTTTGATTTCGTAAGGTGAGTGTATACTGCGAGTTTTATGTTTATTCCAATG</gDNA_template>
            <first_frame> L  F  S  F  F  S  F  F  F  L  L  L  L  G  D  L  L  L  Y  H  R  E  D  T  G  N  P  I  T  P  V  I  I  S  P  I  S  E  *  *  L  R  K  C  *  I  I  G  *  N  K  N  N  N  K  P  *  C  S  K  L  F  F  N  N  S  H  S  I  T  L  A  L  *  L  L  L  R :   Y  Q  V  E  I  Y  L  L  G  L  I  Q  V  H  A  A  A   : C  I  L  G  I  F  T  P  R  C  L  K  L  F  F  M  N  F  F  H  V  L  V  W  L  K  G  A  N  L  *  G  R  T  S :   H  L  M  A  L  F  I  I  M  T  V  G  L  L  N  L  L  *  L  L  K  M  E  G  T   : C  L  G  S  L  L  K  L  T  G  H  M  P  V  D  R  G  R  I  L  Q  :  V  T  S  M  Y  L  L  V  I  *  A  Q  K  L  L  M  P  C  C  L  L  A  S  L  F  T  L  V  A   : L  M  L  G  *  C  G  I  S  R  L  G  V  L  G  V  L  D  L  F  L  S  G  T  N  R :   M  P  K  V  Q  L  M  I  *  L  :  G  N  G  L  V  V  D  R  Y  V  V  T  G  L  Q  K  E  L  I  L  M  M  S  K  A  Q  K  S  E  V  S  W  N  *  L  M  D  H  Q  :  K  M  V  K  I  Q  Q  V  V  M  L  L  K  T  T  R  N  I  Q  L  F  M  W  V  I  L  L  L  R :   R  H  N  S  I  S  I  A  T  F  M  S  L  V  Q  E  *  *  R  K  F  G  F  N  V  I  K  D  L  V  L  *  D  T  A  P  M  M  R  Q  L  W  Q  F  K  W  E  M  P  N  Q  F  C  V  G  D  R  L  S :   V  L  G  V  T  N  Q  H  H  L  E  Q  P  Q  I  L  F  H  H  Q  L  Q  R  H  *  A  L  L  P  L  I  F  *  L  M  N  G  S  *  L  *  V  R  W  L  V  F  M  P  S  C  N  L  R  V  N  I  P  *  S  K  H  Q  W  E  *  V  L  L  E  Q  A  R  L  Y  M  M  V  V  S  R  I  L  L  L  S  S  S  C  I  T  S  N  V  Q  K  Y  G  L  T  F  R  C  L  S  F  R  L  D  E  F  L  *  M  S  R  F  S  C  I  L  F  S  K  S  R  L  G  M  R  Y  S  H  V  R  I  L  *  G  E  H  F  M  S  L  I  S  *  G  E  C  I  L  R  V  L  C  L  F  Q   </first_frame>
            <second_frame>  F  F  L  F  F  L  F  F  F  F  F  F  S  E  T  F  F  Y  I  T  A  R  T  Q  E  I  Q  S  R  R  *  L  F  L  R  S  R  S  S  S  *  E  N  A  E  S  *  A  K  T  R  T  T  T  S  L  D  A  A  S  S  S  S  T  T  V  T  L  S  P  W  P  Y  S  C  S  S   : D  T  K  W  K  S  T  S  W  V  *  S  K  Y  M  P  Q  R  :  V  Y  W  E  Y  S  P  P  G  V  *  N  S  S  S  *  T  F  F  M  Y  W  S  G  *  R  V  Q  T  C  K  E  G  Q   : V  I  L  W  L  C  S  L  L  *  P  *  V  C  *  T  C  Y  S  Y  S  K  W  K  A  P  :  V  W  A  A  Y  *  S  *  L  G  I  C  Q  W  T  E  G  G  Y  F  K :   S  L  Q  C  I  C  W  *  S  E  P  R  S  Y  *  C  H  V  V  C  L  L  L  C  L  P  *  L  L  :  *  C  *  G  N  V  G  S  A  D  W  A  F  *  G  F  W  I  C  F  F  P  E  P  T   : G  C  P  K  C  N  *  *  F  N  W :   E  M  A  W  *  *  T  D  T  L  *  L  G  Y  K  R  S  *  F  *  *  *  A  R  L  R  N  Q  K  C  R  G  I  N  *  W  I  I  R :   R  W  *  R  S  S  K  *  *  C  S  *  K  Q  P  A  I  Y  N  C  L  C  G  *  S  C  S  *   : G  D  T  T  R  S  P  S  P  L  L  C  H  W  C  R  S  D  R  G  S  S  G  S  T  *  *  R  I  W  F  C  K  I  Q  H  P  *  *  G  S  F  G  N  S  N  G  K  C  P  I  N  F  V  W  E  T  D  *   : V  F  L  G  *  Q  T  N  T  T  W  N  S  L  K  S  S  S  T  T  S  C  S  A  I  R  P  Y  C  H  *  S  F  D  L  *  T  A  A  S  Y  E  *  D  G  W  C  S  C  P  H  A  I  S  G  S  T  S  P  E  A  S  I  N  G  N  E  C  F  W  S  K  P  G  Y  I  *  W  W  F  P  E  S  C  C  S  A  A  H  V  L  P  V  M  C  R  N  M  A  *  H  F  V  A  F  R  L  D  *  M  S  F  Y  K  C  L  D  F  L  V  F  C  S  R  N  Q  G  L  V  C  G  T  H  M  *  E  Y  Y  E  V  N  I  L  C  L  *  F  R  K  V  S  V  Y  C  E  F  Y  V  Y  S  N  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  S  S  S  S  R  R  P  S  S  I  S  P  R  G  H  R  K  S  N  H  A  G  N  Y  F  S  D  L  G  V  V  V  E  K  M  L  N  H  R  L  K  Q  E  Q  Q  Q  A  L  M  Q  Q  A  L  L  Q  Q  Q  S  L  Y  H  P  G  L  I  A  A  P  Q  :  I  P  S  G  N  L  P  P  G  F  D  P  S  T  C  R  S  V :   Y  I  G  N  I  H  P  Q  V  S  E  T  L  L  H  E  L  F  S  C  T  G  L  V  E  G  C  K  L  V  R  K  D  K  :  S  S  Y  G  F  V  H  Y  Y  D  R  R  S  A  E  L  A  I  V  T  Q  N  G  R  H  L :   F  G  Q  P  I  K  V  N  W  A  Y  A  S  G  Q  R  E  D  T  S   : S  H  F  N  V  F  V  G  D  L  S  P  E  V  T  D  A  M  L  F  A  C  F  S  V  Y  P  S  C  S :   D  A  R  V  M  W  D  Q  Q  T  G  R  S  R  G  F  G  F  V  S  F  R  N  Q  Q  :  D  A  Q  S  A  I  N  D  L  T   : G  K  W  L  G  S  R  Q  I  R  C  N  W  A  T  K  G  A  N  S  N  D  E  Q  G  S  E  I  R  S  V  V  E  L  T  N  G  S  S   : E  D  G  K  D  P  A  S  S  D  A  P  E  N  N  P  Q  Y  T  T  V  Y  V  G  N  L  A  P  E  :  A  T  Q  L  D  L  H  R  H  F  Y  V  I  G  A  G  V  I  E  E  V  R  V  Q  R  D  K  G  F  G  F  V  R  Y  S  T  H  D  E  A  A  L  A  I  Q  M  G  N  A  Q  S  I  L  C  G  R  Q  I  K  :  C  S  W  G  N  K  P  T  P  P  G  T  A  S  N  P  L  P  P  P  A  A  A  P  L  G  L  T  A  T  D  L  L  T  Y  E  R  Q  L  A  M  S  K  M  A  G  V  H  A  L  M  Q  S  Q  G  Q  H  P  L  K  Q  A  S  M  G  M  S  A  S  G  A  S  Q  A  I  Y  D  G  G  F  Q  N  L  A  A  Q  Q  L  M  Y  Y  Q  *  C  A  E  I  W  L  D  I  S  L  P  F  V  *  T  R  *  V  F  I  N  V  *  I  F  L  Y  S  V  L  E  I  K  A  W  Y  A  V  L  T  C  K  N  I  M  R  *  T  F  Y  V  F  D  F  V  R  *  V  Y  T  A  S  F  M  F  I  P  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32081" stop="32311"/>
                    <exon start="33799" stop="33851"/>
                    <exon start="34048" stop="34150"/>
                    <exon start="34329" stop="34405"/>
                    <exon start="34483" stop="34544"/>
                    <exon start="34650" stop="34737"/>
                    <exon start="34893" stop="34968"/>
                    <exon start="35055" stop="35085"/>
                    <exon start="35245" stop="35361"/>
                    <exon start="35523" stop="35608"/>
                    <exon start="35766" stop="35942"/>
                    <exon start="36148" stop="36426"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFSSSSRRPSSISPRGHRKSNHAGNYFSDLGVVVEKMLNHRLKQEQQQALMQQALLQQQSLYHPGLIAAPQIPSGNLPPGFDPSTCRSVYIGNIHPQVSETLLHELFSCTGLVEGCKLVRKDKSSYGFVHYYDRRSAELAIVTQNGRHLFGQPIKVNWAYASGQREDTSSHFNVFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEQGSEIRSVVELTNGSSEDGKDPASSDAPENNPQYTTVYVGNLAPEATQLDLHRHFYVIGAGVIEEVRVQRDKGFGFVRYSTHDEAALAIQMGNAQSILCGRQIKCSWGNKPTPPGTASNPLPPPAAAPLGLTATDLLTYERQLAMSKMAGVHALMQSQGQHPLKQASMGMSASGASQAIYDGGFQNLAAQQLMYYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="46760" PGL_stop="45810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46760" e_stop="46705"/>
            <exon e_start="46604" e_stop="46454"/>
            <exon e_start="46375" e_stop="45810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.817" acc_prob="0.953" e_score="0.982"/>
          <exon-intron don_prob="0.992" acc_prob="0.862" e_score="0.987"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="46760" e_stop="46705" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.817" acc_prob="0.953">
            <gDNA_intron_boundary i_start="46704" i_stop="46605" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="46604" e_stop="46454" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.862">
            <gDNA_intron_boundary i_start="46453" i_stop="46376" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.915">
            <gDNA_exon_boundary e_start="46375" e_stop="45810" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46760" stop="46705"/>
              <exon start="46604" stop="46454"/>
              <exon start="46375" stop="45810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAAGAAGGTGGAGATACTGGAGGCGTGAACTCTAATCTGTATCCTACGGG : GCTAATAAATGGCAGGTGAACCAGTTGATGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCATAGAATCAT : AATCCAGCCAACAATACTTGTTGATGTGAGCAGAATAGACATGTCAACTGTTATACTCAGTCACAAGACGTCAGCTCCTATAATGATTGCCCCAACTATGATGCACAAATTTGCACACCCTGAAGGTTGTACTAAATCAATTACTCAATTCATTTCAATTTGTTTGTCTGATTTTGACTTGACACAACATTTAAGAAGTAAAAGAAGATTTTTGTATCTTATTATCTTAAACTAAAGATATGTAGACTGTACCAATGATCTTATGCTTTTAAACATGTCAGGTGGAAAGATAGACTTAAAGACTTCTCAAAGAAGGAAAGAGGAACCGACCAAAAAGGAAAGTAAGAGAAACAAATTGAAACGGGAAGTATCTCCTTAGTCGCTTATGGTTAACTGATTCTACAAACCTGTTATATTTATGCCAGGAGAAATTGCAACAGCTAGAGGCGCTGCATCATGTAATGTTATCGCGGTAATATTTTCTGAAAAAAAAAGAACAAATTTTATCGAATTCTAGTGTCTGGATGCTAAAATTCTCTTGGATACAGGGATTGTCATTTACGTGC</gDNA_template>
            <first_frame> K  K  Q  E  G  G  D  T  G  G  V  N  S  N  L  Y  P  T  G :   L  I  N  G  R  *  T  S  *  C  E  *  I  *  R  A  S  *  A  S  S  S  K  D  I  L  *  L  L  F  W  R  S  *  G  P  A  H  T  Q  T  K  Y  *  S  I  S  *  N  H  :  N  P  A  N  N  T  C  *  C  E  Q  N  R  H  V  N  C  Y  T  Q  S  Q  D  V  S  S  Y  N  D  C  P  N  Y  D  A  Q  I  C  T  P  *  R  L  Y  *  I  N  Y  S  I  H  F  N  L  F  V  *  F  *  L  D  T  T  F  K  K  *  K  K  I  F  V  S  Y  Y  L  K  L  K  I  C  R  L  Y  Q  *  S  Y  A  F  K  H  V  R  W  K  D  R  L  K  D  F  S  K  K  E  R  G  T  D  Q  K  G  K  *  E  K  Q  I  E  T  G  S  I  S  L  V  A  Y  G  *  L  I  L  Q  T  C  Y  I  Y  A  R  R  N  C  N  S  *  R  R  C  I  M  *  C  Y  R  G  N  I  F  *  K  K  K  N  K  F  Y  R  I  L  V  S  G  C  *  N  S  L  G  Y  R  D  C  H  L  R   </first_frame>
            <second_frame>  K  N  K  K  V  E  I  L  E  A  *  T  L  I  C  I  L  R   : G  *  *  M  A  G  E  P  V  D  V  N  E  F  E  E  L  A  R  Q  V  L  P  K  I  S  Y  D  F  F  S  G  G  A  E  D  Q  H  T  L  K  Q  N  I  E  A  F  H  R  I  I :   I  Q  P  T  I  L  V  D  V  S  R  I  D  M  S  T  V  I  L  S  H  K  T  S  A  P  I  M  I  A  P  T  M  M  H  K  F  A  H  P  E  G  C  T  K  S  I  T  Q  F  I  S  I  C  L  S  D  F  D  L  T  Q  H  L  R  S  K  R  R  F  L  Y  L  I  I  L  N  *  R  Y  V  D  C  T  N  D  L  M  L  L  N  M  S  G  G  K  I  D  L  K  T  S  Q  R  R  K  E  E  P  T  K  K  E  S  K  R  N  K  L  K  R  E  V  S  P  *  S  L  M  V  N  *  F  Y  K  P  V  I  F  M  P  G  E  I  A  T  A  R  G  A  A  S  C  N  V  I  A  V  I  F  S  E  K  K  R  T  N  F  I  E  F  *  C  L  D  A  K  I  L  L  D  T  G  I  V  I  Y  V  </second_frame>
            <third_frame>   K  T  R  R  W  R  Y  W  R  R  E  L  *  S  V  S  Y  G  :  A  N  K  W  Q  V  N  Q  L  M  *  M  N  L  K  S  *  L  G  K  F  F  Q  R  Y  P  M  T  S  F  L  E  E  L  R  T  S  T  H  S  N  K  I  L  K  H  F  I  E  S   : *  S  S  Q  Q  Y  L  L  M  *  A  E  *  T  C  Q  L  L  Y  S  V  T  R  R  Q  L  L  *  *  L  P  Q  L  *  C  T  N  L  H  T  L  K  V  V  L  N  Q  L  L  N  S  F  Q  F  V  C  L  I  L  T  *  H  N  I  *  E  V  K  E  D  F  C  I  L  L  S  *  T  K  D  M  *  T  V  P  M  I  L  C  F  *  T  C  Q  V  E  R  *  T  *  R  L  L  K  E  G  K  R  N  R  P  K  R  K  V  R  E  T  N  *  N  G  K  Y  L  L  S  R  L  W  L  T  D  S  T  N  L  L  Y  L  C  Q  E  K  L  Q  Q  L  E  A  L  H  H  V  M  L  S  R  *  Y  F  L  K  K  K  E  Q  I  L  S  N  S  S  V  W  M  L  K  F  S  W  I  Q  G  L  S  F  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46596" stop="46454"/>
                    <exon start="46375" stop="46141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAGEPVDVNEFEELARQVLPKISYDFFSGGAEDQHTLKQNIEAFHRIIIQPTILVDVSRIDMSTVILSHKTSAPIMIAPTMMHKFAHPEGCTKSITQFISICLSDFDLTQHLRSKRRFLYLIILN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47022" PGL_stop="48948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47022" e_stop="47242"/>
            <exon e_start="47311" e_stop="47435"/>
            <exon e_start="47530" e_stop="47576"/>
            <exon e_start="47907" e_stop="47984"/>
            <exon e_start="48079" e_stop="48200"/>
            <exon e_start="48363" e_stop="48420"/>
            <exon e_start="48652" e_stop="48714"/>
            <exon e_start="48905" e_stop="48948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.371" acc_prob="0.424" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.470" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47022" e_stop="47242" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47243" i_stop="47310" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47311" e_stop="47435" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.371" acc_prob="0.424">
            <gDNA_intron_boundary i_start="47436" i_stop="47529" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47530" e_stop="47576" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.989">
            <gDNA_intron_boundary i_start="47577" i_stop="47906" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47907" e_stop="47984" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47985" i_stop="48078" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48079" e_stop="48200" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.470">
            <gDNA_intron_boundary i_start="48201" i_stop="48362" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48363" e_stop="48420" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.852" acc_prob="0.924">
            <gDNA_intron_boundary i_start="48421" i_stop="48651" i_length="231"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48652" e_stop="48714" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="48715" i_stop="48904" i_length="190"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="48905" e_stop="48948" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47022" stop="47242"/>
              <exon start="47311" stop="47435"/>
              <exon start="47530" stop="47576"/>
              <exon start="47907" stop="47984"/>
              <exon start="48079" stop="48200"/>
              <exon start="48363" stop="48420"/>
              <exon start="48652" stop="48714"/>
              <exon start="48905" stop="48948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47022" stop="47242"/>
              <exon start="47311" stop="47435"/>
              <exon start="47530" stop="47576"/>
              <exon start="47907" stop="47984"/>
              <exon start="48079" stop="48200"/>
              <exon start="48363" stop="48381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47023" stop="47242"/>
              <exon start="47311" stop="47435"/>
              <exon start="47530" stop="47576"/>
              <exon start="47907" stop="47984"/>
              <exon start="48079" stop="48163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47023" stop="47242"/>
              <exon start="47311" stop="47435"/>
              <exon start="47530" stop="47576"/>
              <exon start="47907" stop="47931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47025" stop="47242"/>
              <exon start="47311" stop="47435"/>
              <exon start="47530" stop="47576"/>
              <exon start="47907" stop="47984"/>
              <exon start="48079" stop="48200"/>
              <exon start="48363" stop="48420"/>
              <exon start="48652" stop="48714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATATTCTTGCCTCAAAACCTCCGATTCTGCTCTCAAAAGAACCAAAATTCAGTGATTTAACATATAAATGCATAAATGGCAGGTGAACCAGTTAACGTGAATGAATTTGAAGAGCTAGCTAGGCAAGTTCTTCCAAAGATATCCTATGACTTCTTTTCTGGAGGAGCTGAGGACCAGCACACACTCAAACAAAATATTGAAGCATTTCGTAGAATCAC : TATCCGGCCAAGAATACTAGTTGATGTGAGCAAAATTGATATGTCAACTATTATACTCGGTCACAAGACATCAGCTCCAATTATAGTTGCCCCAACTTCGTCGCATCAATTGGCACATCCTGAAG : GAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATG : GGAGTGGCATTTACGTCAACATGCACAATGGAGGAGGTTGCTTCAAGCTGCAAGGCTGTTCGCTTCATTCAGACTTTC : GCTTTCAAGAGAGAGATAACAGCAAATATGGTACAGAGAGCTGAACGCAATGGGTTCAGGGCTATAATACTCACTGCTGATACTCCCAGGCTAGGTAGAAAGGAGGCAGATATAAAGAATAA : GATGATTGCACCTCCTTTCAAGAACTTTGAAGGTCTTATATCTACTGTAGCTGTTTCT : GACAAAGGCTCAAATGTTGAAGCTTACGCTGCAGAAACTCTTGATCCTTCGTTTTGCTGGAAG : GATATAGCATGGTTAAAATCAATTACCAAGTTGCCAATTCTGAT</gDNA_template>
            <first_frame> L  I  F  L  P  Q  N  L  R  F  C  S  Q  K  N  Q  N  S  V  I  *  H  I  N  A  *  M  A  G  E  P  V  N  V  N  E  F  E  E  L  A  R  Q  V  L  P  K  I  S  Y  D  F  F  S  G  G  A  E  D  Q  H  T  L  K  Q  N  I  E  A  F  R  R  I  T :   I  R  P  R  I  L  V  D  V  S  K  I  D  M  S  T  I  I  L  G  H  K  T  S  A  P  I  I  V  A  P  T  S  S  H  Q  L  A  H  P  E   : G  E  V  A  T  A  R  G  A  A  A  C  N  V  I  M  :  G  V  A  F  T  S  T  C  T  M  E  E  V  A  S  S  C  K  A  V  R  F  I  Q  T  F  :  A  F  K  R  E  I  T  A  N  M  V  Q  R  A  E  R  N  G  F  R  A  I  I  L  T  A  D  T  P  R  L  G  R  K  E  A  D  I  K  N  K :   M  I  A  P  P  F  K  N  F  E  G  L  I  S  T  V  A  V  S  :  D  K  G  S  N  V  E  A  Y  A  A  E  T  L  D  P  S  F  C  W  K  :  D  I  A  W  L  K  S  I  T  K  L  P  I  L   </first_frame>
            <second_frame>  L  Y  S  C  L  K  T  S  D  S  A  L  K  R  T  K  I  Q  *  F  N  I  *  M  H  K  W  Q  V  N  Q  L  T  *  M  N  L  K  S  *  L  G  K  F  F  Q  R  Y  P  M  T  S  F  L  E  E  L  R  T  S  T  H  S  N  K  I  L  K  H  F  V  E  S   : L  S  G  Q  E  Y  *  L  M  *  A  K  L  I  C  Q  L  L  Y  S  V  T  R  H  Q  L  Q  L  *  L  P  Q  L  R  R  I  N  W  H  I  L  K  :  E  K  L  Q  Q  L  E  V  L  Q  H  V  M  L  S  W :   E  W  H  L  R  Q  H  A  Q  W  R  R  L  L  Q  A  A  R  L  F  A  S  F  R  L  S :   L  S  R  E  R  *  Q  Q  I  W  Y  R  E  L  N  A  M  G  S  G  L  *  Y  S  L  L  I  L  P  G  *  V  E  R  R  Q  I  *  R  I   : R  *  L  H  L  L  S  R  T  L  K  V  L  Y  L  L  *  L  F  L :   T  K  A  Q  M  L  K  L  T  L  Q  K  L  L  I  L  R  F  A  G  R :   I  *  H  G  *  N  Q  L  P  S  C  Q  F  *  </second_frame>
            <third_frame>   Y  I  L  A  S  K  P  P  I  L  L  S  K  E  P  K  F  S  D  L  T  Y  K  C  I  N  G  R  *  T  S  *  R  E  *  I  *  R  A  S  *  A  S  S  S  K  D  I  L  *  L  L  F  W  R  S  *  G  P  A  H  T  Q  T  K  Y  *  S  I  S  *  N  H  :  Y  P  A  K  N  T  S  *  C  E  Q  N  *  Y  V  N  Y  Y  T  R  S  Q  D  I  S  S  N  Y  S  C  P  N  F  V  A  S  I  G  T  S  *  R :   R  S  C  N  S  *  R  C  C  S  M  *  C  Y  H   : G  S  G  I  Y  V  N  M  H  N  G  G  G  C  F  K  L  Q  G  C  S  L  H  S  D  F   : R  F  Q  E  R  D  N  S  K  Y  G  T  E  S  *  T  Q  W  V  Q  G  Y  N  T  H  C  *  Y  S  Q  A  R  *  K  G  G  R  Y  K  E  *  :  D  D  C  T  S  F  Q  E  L  *  R  S  Y  I  Y  C  S  C  F   : *  Q  R  L  K  C  *  S  L  R  C  R  N  S  *  S  F  V  L  L  E   : G  Y  S  M  V  K  I  N  Y  Q  V  A  N  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47100" stop="47242"/>
                    <exon start="47311" stop="47435"/>
                    <exon start="47530" stop="47576"/>
                    <exon start="47907" stop="47984"/>
                    <exon start="48079" stop="48200"/>
                    <exon start="48363" stop="48420"/>
                    <exon start="48652" stop="48714"/>
                    <exon start="48905" stop="48946"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAGEPVNVNEFEELARQVLPKISYDFFSGGAEDQHTLKQNIEAFRRITIRPRILVDVSKIDMSTIILGHKTSAPIIVAPTSSHQLAHPEGEVATARGAAACNVIMGVAFTSTCTMEEVASSCKAVRFIQTFAFKREITANMVQRAERNGFRAIILTADTPRLGRKEADIKNKMIAPPFKNFEGLISTVAVSDKGSNVEAYAAETLDPSFCWKDIAWLKSITKLPIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48962" PGL_stop="50118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48962" e_stop="48974"/>
            <exon e_start="49118" e_stop="49218"/>
            <exon e_start="49309" e_stop="49413"/>
            <exon e_start="49498" e_stop="49892"/>
            <exon e_start="50102" e_stop="50118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.931"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="0.952"/>
          <exon-intron don_prob="0.582" acc_prob="0.828" e_score="0.957"/>
          <exon-only e_score="0.529"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48962" e_stop="48974" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="48975" i_stop="49117" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="49118" e_stop="49218" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49219" i_stop="49308" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="49309" e_stop="49413" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49414" i_stop="49497" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="49498" e_stop="49892" e_length="395"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.828">
            <gDNA_intron_boundary i_start="49893" i_stop="50101" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="0.529">
            <gDNA_exon_boundary e_start="50102" e_stop="50118" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48962" stop="48974"/>
              <exon start="49118" stop="49218"/>
              <exon start="49309" stop="49413"/>
              <exon start="49498" stop="49892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49726" stop="49892"/>
              <exon start="50102" stop="50118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49726" stop="49892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49726" stop="49892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49726" stop="49892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49727" stop="49892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGTGAAGATG : CAACCAAAGCAATTGAAGCAGGAGTTGCAGGAATAATTGTCTCTAACCATGGAGCTCGGCAGCTGGATTACACTCCAGCTACTATTTCTGCTCTTGAAGAG : GTGGTCCATGCTGTTCAAGTTAAAGTTCCAGTTCTTTTCGATGGAGGAATTAGGCGAGGAACTGACATATTCAAGGCGTTAGCACTAGGCGCTAAAGCTGTTCTG : ATTGGTCGACCAGTCATCTACGGCCTAGCTGCTAAGGGGGAGACCGGGGTAAAACAAGTTATAGAAATGCTCAAGAATGAATTGGAGCAGACCATGGCTCTTGCTGGCTGCCGCACTGTGGATGACATTACCAGAAGCCATGTTAATACAGAGACCGAAAGGATGGAATGTAGGATGTAGTTTAATCCTATGTTCCTCTAAATAAACGGCTTATTAGCGCTAAACTCCATAATCATGTCACGTCTTGCTTTCTAATAATCCTCTGTGTAGTAGCATTTCTGCTCTTCTCCACTAACTAAATCCTTGTATAGGATTGTGATAATTTCCTTATGGTTACTGCAGTGGCCTAGCCACATAAAATAAAGGTTCATCCATTGAACACATTTCATCGAAAA : ATATATATAGAACTCAA</gDNA_template>
            <first_frame> T  G  E  D   : A  T  K  A  I  E  A  G  V  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  T  P  A  T  I  S  A  L  E  E  :  V  V  H  A  V  Q  V  K  V  P  V  L  F  D  G  G  I  R  R  G  T  D  I  F  K  A  L  A  L  G  A  K  A  V  L  :  I  G  R  P  V  I  Y  G  L  A  A  K  G  E  T  G  V  K  Q  V  I  E  M  L  K  N  E  L  E  Q  T  M  A  L  A  G  C  R  T  V  D  D  I  T  R  S  H  V  N  T  E  T  E  R  M  E  C  R  M  *  F  N  P  M  F  L  *  I  N  G  L  L  A  L  N  S  I  I  M  S  R  L  A  F  *  *  S  S  V  *  *  H  F  C  S  S  P  L  T  K  S  L  Y  R  I  V  I  I  S  L  W  L  L  Q  W  P  S  H  I  K  *  R  F  I  H  *  T  H  F  I  E  K :   Y  I  *  N  S  </first_frame>
            <second_frame>  L  V  K  M  :  Q  P  K  Q  L  K  Q  E  L  Q  E  *  L  S  L  T  M  E  L  G  S  W  I  T  L  Q  L  L  F  L  L  L  K  R :   W  S  M  L  F  K  L  K  F  Q  F  F  S  M  E  E  L  G  E  E  L  T  Y  S  R  R  *  H  *  A  L  K  L  F  * :   L  V  D  Q  S  S  T  A  *  L  L  R  G  R  P  G  *  N  K  L  *  K  C  S  R  M  N  W  S  R  P  W  L  L  L  A  A  A  L  W  M  T  L  P  E  A  M  L  I  Q  R  P  K  G  W  N  V  G  C  S  L  I  L  C  S  S  K  *  T  A  Y  *  R  *  T  P  *  S  C  H  V  L  L  S  N  N  P  L  C  S  S  I  S  A  L  L  H  *  L  N  P  C  I  G  L  *  *  F  P  Y  G  Y  C  S  G  L  A  T  *  N  K  G  S  S  I  E  H  I  S  S  K   : N  I  Y  R  T  Q </second_frame>
            <third_frame>   W  *  R  C :   N  Q  S  N  *  S  R  S  C  R  N  N  C  L  *  P  W  S  S  A  A  G  L  H  S  S  Y  Y  F  C  S  *  R   : G  G  P  C  C  S  S  *  S  S  S  S  F  R  W  R  N  *  A  R  N  *  H  I  Q  G  V  S  T  R  R  *  S  C  S   : D  W  S  T  S  H  L  R  P  S  C  *  G  G  D  R  G  K  T  S  Y  R  N  A  Q  E  *  I  G  A  D  H  G  S  C  W  L  P  H  C  G  *  H  Y  Q  K  P  C  *  Y  R  D  R  K  D  G  M  *  D  V  V  *  S  Y  V  P  L  N  K  R  L  I  S  A  K  L  H  N  H  V  T  S  C  F  L  I  I  L  C  V  V  A  F  L  L  F  S  T  N  *  I  L  V  *  D  C  D  N  F  L  M  V  T  A  V  A  *  P  H  K  I  K  V  H  P  L  N  T  F  H  R  K  :  I  Y  I  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48962" stop="48974"/>
                    <exon start="49118" stop="49218"/>
                    <exon start="49309" stop="49413"/>
                    <exon start="49498" stop="49677"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGEDATKAIEAGVAGIIVSNHGARQLDYTPATISALEEVVHAVQVKVPVLFDGGIRRGTDIFKALALGAKAVLIGRPVIYGLAAKGETGVKQVIEMLKNELEQTMALAGCRTVDDITRSHVNTETERMECRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53564" PGL_stop="51000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53564" e_stop="53426"/>
            <exon e_start="52920" e_stop="52772"/>
            <exon e_start="52689" e_stop="52565"/>
            <exon e_start="52469" e_stop="52423"/>
            <exon e_start="52151" e_stop="52074"/>
            <exon e_start="51981" e_stop="51857"/>
            <exon e_start="51726" e_stop="51669"/>
            <exon e_start="51490" e_stop="51428"/>
            <exon e_start="51241" e_stop="51172"/>
            <exon e_start="51084" e_stop="51000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.794" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="53564" e_stop="53426" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53425" i_stop="52921" i_length="505"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52920" e_stop="52772" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52771" i_stop="52690" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52689" e_stop="52565" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.794" acc_prob="0.815">
            <gDNA_intron_boundary i_start="52564" i_stop="52470" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52469" e_stop="52423" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="52422" i_stop="52152" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52151" e_stop="52074" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52073" i_stop="51982" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51981" e_stop="51857" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.890">
            <gDNA_intron_boundary i_start="51856" i_stop="51727" i_length="130"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51726" e_stop="51669" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.858" acc_prob="0.990">
            <gDNA_intron_boundary i_start="51668" i_stop="51491" i_length="178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51490" e_stop="51428" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.925">
            <gDNA_intron_boundary i_start="51427" i_stop="51242" i_length="186"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51241" e_stop="51172" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.813" acc_prob="0.989">
            <gDNA_intron_boundary i_start="51171" i_stop="51085" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="51084" e_stop="51000" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53564" stop="53426"/>
              <exon start="52920" stop="52772"/>
              <exon start="52689" stop="52565"/>
              <exon start="52469" stop="52423"/>
              <exon start="52151" stop="52074"/>
              <exon start="51981" stop="51857"/>
              <exon start="51726" stop="51669"/>
              <exon start="51490" stop="51428"/>
              <exon start="51241" stop="51172"/>
              <exon start="51084" stop="51000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53541" stop="53426"/>
              <exon start="52920" stop="52772"/>
              <exon start="52689" stop="52565"/>
              <exon start="52469" stop="52423"/>
              <exon start="52151" stop="52081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52912" stop="52772"/>
              <exon start="52689" stop="52565"/>
              <exon start="52469" stop="52423"/>
              <exon start="52151" stop="52074"/>
              <exon start="51981" stop="51857"/>
              <exon start="51726" stop="51685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTATCAAGATTATTGTAATTATTGAATTATGCTAATCATTTACAGTGAACTATAATTCTCTAGTTCAATCAACTACAACTATTAGCTAATTAATTGAGCAGTGAACTTTAACTCTTCTCTGTTTTCTATACAACAG : GCTAAAATGGCGGGTGAACCAGTTAATGTGTATGAATTTCAAGAGCTTGCTAGGAAAGTTCTTCCAAAAATGTACTATGACTTCTTTGCTGGAGGAGCTGAGGATGAGTACACACTCAAAGAAAATGTCGAAGCATTTCATAGAATCAC : TATTCAGCCAAGAATACTAGTTGATGTGAGCAGAATAGACATGTCAACTGTCATACTTGGTCACAAGACATCAGCTCCAATTATACTTGCCCCTTCTTCTGCGCATCAATTGGCACATCCTGAAG : GAGAAGTTGCAACAGCTAGAGGTGCTGCAGCATGTAATGTTATCATG : GGACTGTCATTTATGTCTACCTGCACAGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGCTTCTTTCAAATATAT : GTTTTCAAAAAGAGAGATGTAACAGAATTTATGGTACGTCGAGCTGAGAAGAATGGGTTCAGGGCAATAATTCTCACTGCTGATACTCCAAGGCTTGGCAGAAGGGAGGCTGATATAAAGAATAA : GATGATATCATTTCGGCTGAGGAATTTTGAAGGTTTTATATCAACTGATGTTGTTTCT : GACAAAGGCTCAAATCTTGCAGCATATGCTGAAGAAACTCTTGATCCGTCGCTTTGCTGGAAG : GATATCGCGTGGCTAAAATCAATTACTAAGTTGCCAATTTTGATTAAGGGTGTTCTCAATGGTGAAGATG : CAATGAAAGCAATTGAAGCAGGAGTTGTAGGAATTATCGTCTCTAATCATGGAGCTCGACAACTAGATTACTCTCCAGCTACTAT</gDNA_template>
            <first_frame> L  L  S  R  L  L  *  L  L  N  Y  A  N  H  L  Q  *  T  I  I  L  *  F  N  Q  L  Q  L  L  A  N  *  L  S  S  E  L  *  L  F  S  V  F  Y  T  T   : G  *  N  G  G  *  T  S  *  C  V  *  I  S  R  A  C  *  E  S  S  S  K  N  V  L  *  L  L  C  W  R  S  *  G  *  V  H  T  Q  R  K  C  R  S  I  S  *  N  H  :  Y  S  A  K  N  T  S  *  C  E  Q  N  R  H  V  N  C  H  T  W  S  Q  D  I  S  S  N  Y  T  C  P  F  F  C  A  S  I  G  T  S  *  R :   R  S  C  N  S  *  R  C  C  S  M  *  C  Y  H   : G  T  V  I  Y  V  Y  L  H  S  G  G  G  C  F  K  L  Q  C  C  S  L  L  S  N  I   : C  F  Q  K  E  R  C  N  R  I  Y  G  T  S  S  *  E  E  W  V  Q  G  N  N  S  H  C  *  Y  S  K  A  W  Q  K  G  G  *  Y  K  E  *  :  D  D  I  I  S  A  E  E  F  *  R  F  Y  I  N  *  C  C  F   : *  Q  R  L  K  S  C  S  I  C  *  R  N  S  *  S  V  A  L  L  E   : G  Y  R  V  A  K  I  N  Y  *  V  A  N  F  D  *  G  C  S  Q  W  *  R  C :   N  E  S  N  *  S  R  S  C  R  N  Y  R  L  *  S  W  S  S  T  T  R  L  L  S  S  Y  Y </first_frame>
            <second_frame>  Y  Y  Q  D  Y  C  N  Y  *  I  M  L  I  I  Y  S  E  L  *  F  S  S  S  I  N  Y  N  Y  *  L  I  N  *  A  V  N  F  N  S  S  L  F  S  I  Q  Q  :  A  K  M  A  G  E  P  V  N  V  Y  E  F  Q  E  L  A  R  K  V  L  P  K  M  Y  Y  D  F  F  A  G  G  A  E  D  E  Y  T  L  K  E  N  V  E  A  F  H  R  I  T :   I  Q  P  R  I  L  V  D  V  S  R  I  D  M  S  T  V  I  L  G  H  K  T  S  A  P  I  I  L  A  P  S  S  A  H  Q  L  A  H  P  E   : G  E  V  A  T  A  R  G  A  A  A  C  N  V  I  M  :  G  L  S  F  M  S  T  C  T  V  E  E  V  A  S  S  C  N  A  V  R  F  F  Q  I  Y  :  V  F  K  K  R  D  V  T  E  F  M  V  R  R  A  E  K  N  G  F  R  A  I  I  L  T  A  D  T  P  R  L  G  R  R  E  A  D  I  K  N  K :   M  I  S  F  R  L  R  N  F  E  G  F  I  S  T  D  V  V  S  :  D  K  G  S  N  L  A  A  Y  A  E  E  T  L  D  P  S  L  C  W  K  :  D  I  A  W  L  K  S  I  T  K  L  P  I  L  I  K  G  V  L  N  G  E  D   : A  M  K  A  I  E  A  G  V  V  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  S  P  A  T   </second_frame>
            <third_frame>   T  I  K  I  I  V  I  I  E  L  C  *  S  F  T  V  N  Y  N  S  L  V  Q  S  T  T  T  I  S  *  L  I  E  Q  *  T  L  T  L  L  C  F  L  Y  N  R :   L  K  W  R  V  N  Q  L  M  C  M  N  F  K  S  L  L  G  K  F  F  Q  K  C  T  M  T  S  L  L  E  E  L  R  M  S  T  H  S  K  K  M  S  K  H  F  I  E  S   : L  F  S  Q  E  Y  *  L  M  *  A  E  *  T  C  Q  L  S  Y  L  V  T  R  H  Q  L  Q  L  Y  L  P  L  L  L  R  I  N  W  H  I  L  K  :  E  K  L  Q  Q  L  E  V  L  Q  H  V  M  L  S  W :   D  C  H  L  C  L  P  A  Q  W  R  R  L  L  Q  A  A  M  L  F  A  S  F  K  Y  M :   F  S  K  R  E  M  *  Q  N  L  W  Y  V  E  L  R  R  M  G  S  G  Q  *  F  S  L  L  I  L  Q  G  L  A  E  G  R  L  I  *  R  I   : R  *  Y  H  F  G  *  G  I  L  K  V  L  Y  Q  L  M  L  F  L :   T  K  A  Q  I  L  Q  H  M  L  K  K  L  L  I  R  R  F  A  G  R :   I  S  R  G  *  N  Q  L  L  S  C  Q  F  *  L  R  V  F  S  M  V  K  M  :  Q  *  K  Q  L  K  Q  E  L  *  E  L  S  S  L  I  M  E  L  D  N  *  I  T  L  Q  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53464" stop="53426"/>
                    <exon start="52920" stop="52772"/>
                    <exon start="52689" stop="52565"/>
                    <exon start="52469" stop="52423"/>
                    <exon start="52151" stop="52074"/>
                    <exon start="51981" stop="51857"/>
                    <exon start="51726" stop="51669"/>
                    <exon start="51490" stop="51428"/>
                    <exon start="51241" stop="51172"/>
                    <exon start="51084" stop="51002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVNFNSSLFSIQQAKMAGEPVNVYEFQELARKVLPKMYYDFFAGGAEDEYTLKENVEAFHRITIQPRILVDVSRIDMSTVILGHKTSAPIILAPSSAHQLAHPEGEVATARGAAACNVIMGLSFMSTCTVEEVASSCNAVRFFQIYVFKKRDVTEFMVRRAEKNGFRAIILTADTPRLGRREADIKNKMISFRLRNFEGFISTDVVSDKGSNLAAYAEETLDPSLCWKDIAWLKSITKLPILIKGVLNGEDAMKAIEAGVVGIIVSNHGARQLDYSPAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57010" PGL_stop="62746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57010" e_stop="57536"/>
            <exon e_start="58190" e_stop="58395"/>
            <exon e_start="58515" e_stop="58718"/>
            <exon e_start="59170" e_stop="59280"/>
            <exon e_start="59366" e_stop="59461"/>
            <exon e_start="59562" e_stop="59607"/>
            <exon e_start="59697" e_stop="59776"/>
            <exon e_start="60193" e_stop="60261"/>
            <exon e_start="60375" e_stop="60459"/>
            <exon e_start="60592" e_stop="60746"/>
            <exon e_start="60853" e_stop="60933"/>
            <exon e_start="62052" e_stop="62111"/>
            <exon e_start="62255" e_stop="62746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.982"/>
          <exon-intron don_prob="0.875" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.409" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="57010" e_stop="57536" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="57537" i_stop="58189" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58190" e_stop="58395" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.875" acc_prob="0.731">
            <gDNA_intron_boundary i_start="58396" i_stop="58514" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58515" e_stop="58718" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58719" i_stop="59169" i_length="451"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59170" e_stop="59280" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.820">
            <gDNA_intron_boundary i_start="59281" i_stop="59365" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59366" e_stop="59461" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.409" acc_prob="0.971">
            <gDNA_intron_boundary i_start="59462" i_stop="59561" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59562" e_stop="59607" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59608" i_stop="59696" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59697" e_stop="59776" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.842">
            <gDNA_intron_boundary i_start="59777" i_stop="60192" i_length="416"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60193" e_stop="60261" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60262" i_stop="60374" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60375" e_stop="60459" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.805" acc_prob="0.914">
            <gDNA_intron_boundary i_start="60460" i_stop="60591" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="60592" e_stop="60746" e_length="155"/>
          </exon>
          <intron i_serial="10" don_prob="0.803" acc_prob="0.892">
            <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60933" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62052" e_stop="62111" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62255" e_stop="62746" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57010" stop="57536"/>
              <exon start="58190" stop="58311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57032" stop="57536"/>
              <exon start="58190" stop="58395"/>
              <exon start="58515" stop="58614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57168" stop="57536"/>
              <exon start="58190" stop="58356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57187" stop="57536"/>
              <exon start="58190" stop="58372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57187" stop="57536"/>
              <exon start="58190" stop="58338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57234" stop="57536"/>
              <exon start="58190" stop="58219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57413" stop="57536"/>
              <exon start="58190" stop="58395"/>
              <exon start="58515" stop="58718"/>
              <exon start="59170" stop="59271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58219" stop="58395"/>
              <exon start="58515" stop="58718"/>
              <exon start="59170" stop="59280"/>
              <exon start="59366" stop="59438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58558" stop="58718"/>
              <exon start="59170" stop="59280"/>
              <exon start="59366" stop="59461"/>
              <exon start="59562" stop="59607"/>
              <exon start="59697" stop="59776"/>
              <exon start="60193" stop="60250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59598" stop="59607"/>
              <exon start="59697" stop="59776"/>
              <exon start="60193" stop="60261"/>
              <exon start="60375" stop="60459"/>
              <exon start="60592" stop="60746"/>
              <exon start="60853" stop="60933"/>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60248" stop="60261"/>
              <exon start="60375" stop="60459"/>
              <exon start="60592" stop="60746"/>
              <exon start="60853" stop="60933"/>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60636" stop="60746"/>
              <exon start="60853" stop="60933"/>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262874" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60899" stop="60933"/>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322040" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62056" stop="62111"/>
              <exon start="62255" stop="62692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62363" stop="62735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257393" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTCTCTGCCCTGCACTGAGGAAGTTGACTGTTTGAAATACAACTGATGGTCCCCTGCAACTTTCACGGCACCTTCCTGTAATACCATCTTCAGTCTTGATCCAATTCAGTTTATCATCCAATTTCTCATCTGGGTCACTGTTTTTATGCTATAGTTTCACAAATGGTGGCTTCTTCTCTGGCATCTCCACTATGTACATGGCTCGTAGCAGCTTGCATGTCTGTATCCAGCGAAAAGGATCAATTTTCGAAGCCTGCTTCTAGCTTTCAGTCTTCCAAGTTCATGGGTAGGAGAAGAAAAGCGATTACCAAGTTCAAAAGTGGGAGCTTGATGAATGGTTCTGTAATGAACACTTCTTGGCATAATTGTTTTGGTTTTGAGCCCTGTGAGGAGTATTATAAATCAGACGGATTCTCTGCTTCTTTTTCGTCTTTATTTGCCGAAAATCCGTTTTCTGTATTTGGGTTTAAACAGGTGCCATTGAATCGAAGGCAGAGGAGAATGAGCTCTGCTGCTCATCCTG : GCAAACCCATGGCTGTGGCTGTGCAACCTGCAATGGAAGCCACGACAATGAAGAAACCTCTTATGAGGAACAGGAGAGTTGTTGTGACCGGGGTCGGTGTAGTATCACCAATTGGTCATGATCCAGACATGTTTTATAGTAATCTTCTTGAAGGCATCAGTGGTATAAGTCAGATTGAGGCTTTCGACTGTTCTGAATTTCCCAGT : AGAATTGCTGGGGAAATCAAGGAATTTTCGACTAATGGATGGGTTGCACCCAAACTTTCGAAAAGAGCAGATAAGTTCATGCTTTATATGCTTACTGCTGGAAAGAAAGCTTTGGCAGATGGTGGGATCACAGAAGACTTATTGCAGGAATTAGATAAGGCTAGATGTGGGGTCCTTATTGGCTCTGCCCTTGGAGGGATGAAG : GTCTTCCATGATGGCATTGAGGCTTTACAGGTGTCGTACAAGAAGCTGAATCCTTTCTGTGTACCTTTTGCAACATCCAATATGGGAGCTGCCATGCTTGCAATAGATTTG : GGTTGGATGGGTCCAAGCTACTCAATCTCCACTGCATGTGCAACAAGTAACTTCTGTATATTGAGTGCTTCAAATCATATAATTAGAGGTGAAACA : GATATGATGCTTTGTGGGGGGTCAGATTCGGCAATTATTCCTATAG : GCTTGGGAGGTTTCAGTGCTTGTGGAGCCCTGTCACAGAGGAATAGTGATCCAACAAGGGCTTCACGTCCCTGGGATATG : GACCGTGATGGATTTGTGATTGGGGAAGGATCCGGCGTCTTACTTTTAGAAGAACTTGAACATGCAAAG : ACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAG : GAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAA : CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAG : GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG : GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCAAGTTGCCCTTGAAAGATTCCAGCATGCCAACGAAAGCTAGAACATGAACTAAACATCTTTACTAGTTCATCAAAAAGGAAAGCTGGCACCGGAGATCACGAGTGTGTGAAGTCATTTTCCTAACTGTACTACCTTTTTAACTACTATAGATATTTTGAAATTGGGTTCATCTTTCTATTAGTTGTTCTTAGGTATGAACTGTAGCAGCCAATACATAATTCATCTCACATCTGCTTGGAAATGAGAAATATGTTTTTTTCTTTGTGATATACTATTGTTGTATTTGCTATGGCTATAAAAAAGTGATGTCCAT</gDNA_template>
            <first_frame> N  P  L  C  P  A  L  R  K  L  T  V  *  N  T  T  D  G  P  L  Q  L  S  R  H  L  P  V  I  P  S  S  V  L  I  Q  F  S  L  S  S  N  F  S  S  G  S  L  F  L  C  Y  S  F  T  N  G  G  F  F  S  G  I  S  T  M  Y  M  A  R  S  S  L  H  V  C  I  Q  R  K  G  S  I  F  E  A  C  F  *  L  S  V  F  Q  V  H  G  *  E  K  K  S  D  Y  Q  V  Q  K  W  E  L  D  E  W  F  C  N  E  H  F  L  A  *  L  F  W  F  *  A  L  *  G  V  L  *  I  R  R  I  L  C  F  F  F  V  F  I  C  R  K  S  V  F  C  I  W  V  *  T  G  A  I  E  S  K  A  E  E  N  E  L  C  C  S  S  W :   Q  T  H  G  C  G  C  A  T  C  N  G  S  H  D  N  E  E  T  S  Y  E  E  Q  E  S  C  C  D  R  G  R  C  S  I  T  N  W  S  *  S  R  H  V  L  *  *  S  S  *  R  H  Q  W  Y  K  S  D  *  G  F  R  L  F  *  I  S  Q   : *  N  C  W  G  N  Q  G  I  F  D  *  W  M  G  C  T  Q  T  F  E  K  S  R  *  V  H  A  L  Y  A  Y  C  W  K  E  S  F  G  R  W  W  D  H  R  R  L  I  A  G  I  R  *  G  *  M  W  G  P  Y  W  L  C  P  W  R  D  E   : G  L  P  *  W  H  *  G  F  T  G  V  V  Q  E  A  E  S  F  L  C  T  F  C  N  I  Q  Y  G  S  C  H  A  C  N  R  F   : G  L  D  G  S  K  L  L  N  L  H  C  M  C  N  K  *  L  L  Y  I  E  C  F  K  S  Y  N  *  R  *  N   : R  Y  D  A  L  W  G  V  R  F  G  N  Y  S  Y  R :   L  G  R  F  Q  C  L  W  S  P  V  T  E  E  *  *  S  N  K  G  F  T  S  L  G  Y   : G  P  *  W  I  C  D  W  G  R  I  R  R  L  T  F  R  R  T  *  T  C  K   : D  E  K  G  *  N  I  C  *  V  F  G  W  K  L  H  F  *  C  L  S  H  D  R  A  T  S  R  R :   K  W  S  C  S  L  H  R  K  G  L  G  S  I  W  G  E  T  *  R  C  Q  L  Y  K  C  S  C  C  I  N  A  S  R  *  P  E  R  I  S  G  Y  S  A  L  L  W  E  E  P  *   : T  *  N  K  F  N  K  V  H  D  W  S  S  P  W  G  C  W  C  C  G  S  H  R  N  S  Q   : G  H  T  Y  R  M  D  P  S  K  H  Q  S  *  E  P  *  Q  W  L   : G  Y  E  C  A  G  G  L  *  E  G  A  L  G  Y  Q  G  C  T  L  Q  L  I  W  L  W  R  T  Q  L  V  Y  S  I  C  A  L  *  E  C  L  I  Q  S  L  H  I  S  C  L  K  N  V  M  L  C  *  F  S  S  S  C  P  *  K  I  P  A  C  Q  R  K  L  E  H  E  L  N  I  F  T  S  S  S  K  R  K  A  G  T  G  D  H  E  C  V  K  S  F  S  *  L  Y  Y  L  F  N  Y  Y  R  Y  F  E  I  G  F  I  F  L  L  V  V  L  R  Y  E  L  *  Q  P  I  H  N  S  S  H  I  C  L  E  M  R  N  M  F  F  S  L  *  Y  T  I  V  V  F  A  M  A  I  K  K  *  C  P  </first_frame>
            <second_frame>  I  L  S  A  L  H  *  G  S  *  L  F  E  I  Q  L  M  V  P  C  N  F  H  G  T  F  L  *  Y  H  L  Q  S  *  S  N  S  V  Y  H  P  I  S  H  L  G  H  C  F  Y  A  I  V  S  Q  M  V  A  S  S  L  A  S  P  L  C  T  W  L  V  A  A  C  M  S  V  S  S  E  K  D  Q  F  S  K  P  A  S  S  F  Q  S  S  K  F  M  G  R  R  R  K  A  I  T  K  F  K  S  G  S  L  M  N  G  S  V  M  N  T  S  W  H  N  C  F  G  F  E  P  C  E  E  Y  Y  K  S  D  G  F  S  A  S  F  S  S  L  F  A  E  N  P  F  S  V  F  G  F  K  Q  V  P  L  N  R  R  Q  R  R  M  S  S  A  A  H  P   : G  K  P  M  A  V  A  V  Q  P  A  M  E  A  T  T  M  K  K  P  L  M  R  N  R  R  V  V  V  T  G  V  G  V  V  S  P  I  G  H  D  P  D  M  F  Y  S  N  L  L  E  G  I  S  G  I  S  Q  I  E  A  F  D  C  S  E  F  P  S  :  R  I  A  G  E  I  K  E  F  S  T  N  G  W  V  A  P  K  L  S  K  R  A  D  K  F  M  L  Y  M  L  T  A  G  K  K  A  L  A  D  G  G  I  T  E  D  L  L  Q  E  L  D  K  A  R  C  G  V  L  I  G  S  A  L  G  G  M  K  :  V  F  H  D  G  I  E  A  L  Q  V  S  Y  K  K  L  N  P  F  C  V  P  F  A  T  S  N  M  G  A  A  M  L  A  I  D  L  :  G  W  M  G  P  S  Y  S  I  S  T  A  C  A  T  S  N  F  C  I  L  S  A  S  N  H  I  I  R  G  E  T  :  D  M  M  L  C  G  G  S  D  S  A  I  I  P  I   : G  L  G  G  F  S  A  C  G  A  L  S  Q  R  N  S  D  P  T  R  A  S  R  P  W  D  M  :  D  R  D  G  F  V  I  G  E  G  S  G  V  L  L  L  E  E  L  E  H  A  K  :  T  R  K  A  K  I  Y  A  E  F  L  G  G  S  F  T  S  D  A  Y  H  M  I  E  P  H  P  E   : G  S  G  V  V  L  C  I  E  K  A  L  A  Q  S  G  V  K  R  E  D  V  N  Y  I  N  A  H  A  A  S  T  P  A  G  D  L  N  E  Y  Q  A  I  L  H  C  F  G  K  N  P  E  :  L  K  I  N  S  T  K  S  M  T  G  H  L  L  G  A  A  G  A  V  E  A  I  A  T  V  K  :  A  I  H  T  G  W  I  H  P  N  I  N  L  E  N  P  D  N  G  L  :  D  M  N  V  L  V  G  S  K  K  E  R  L  D  I  K  V  A  L  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  N  V  *  F  N  P  C  T  Y  H  V  *  R  M  *  C  C  V  D  F  H  Q  V  A  L  E  R  F  Q  H  A  N  E  S  *  N  M  N  *  T  S  L  L  V  H  Q  K  G  K  L  A  P  E  I  T  S  V  *  S  H  F  P  N  C  T  T  F  L  T  T  I  D  I  L  K  L  G  S  S  F  Y  *  L  F  L  G  M  N  C  S  S  Q  Y  I  I  H  L  T  S  A  W  K  *  E  I  C  F  F  L  C  D  I  L  L  L  Y  L  L  W  L  *  K  S  D  V  H </second_frame>
            <third_frame>   S  S  L  P  C  T  E  E  V  D  C  L  K  Y  N  *  W  S  P  A  T  F  T  A  P  S  C  N  T  I  F  S  L  D  P  I  Q  F  I  I  Q  F  L  I  W  V  T  V  F  M  L  *  F  H  K  W  W  L  L  L  W  H  L  H  Y  V  H  G  S  *  Q  L  A  C  L  Y  P  A  K  R  I  N  F  R  S  L  L  L  A  F  S  L  P  S  S  W  V  G  E  E  K  R  L  P  S  S  K  V  G  A  *  *  M  V  L  *  *  T  L  L  G  I  I  V  L  V  L  S  P  V  R  S  I  I  N  Q  T  D  S  L  L  L  F  R  L  Y  L  P  K  I  R  F  L  Y  L  G  L  N  R  C  H  *  I  E  G  R  G  E  *  A  L  L  L  I  L  :  A  N  P  W  L  W  L  C  N  L  Q  W  K  P  R  Q  *  R  N  L  L  *  G  T  G  E  L  L  *  P  G  S  V  *  Y  H  Q  L  V  M  I  Q  T  C  F  I  V  I  F  L  K  A  S  V  V  *  V  R  L  R  L  S  T  V  L  N  F  P  V :   E  L  L  G  K  S  R  N  F  R  L  M  D  G  L  H  P  N  F  R  K  E  Q  I  S  S  C  F  I  C  L  L  L  E  R  K  L  W  Q  M  V  G  S  Q  K  T  Y  C  R  N  *  I  R  L  D  V  G  S  L  L  A  L  P  L  E  G  *  R :   S  S  M  M  A  L  R  L  Y  R  C  R  T  R  S  *  I  L  S  V  Y  L  L  Q  H  P  I  W  E  L  P  C  L  Q  *  I  W :   V  G  W  V  Q  A  T  Q  S  P  L  H  V  Q  Q  V  T  S  V  Y  *  V  L  Q  I  I  *  L  E  V  K  Q :   I  *  C  F  V  G  G  Q  I  R  Q  L  F  L  *  :  A  W  E  V  S  V  L  V  E  P  C  H  R  G  I  V  I  Q  Q  G  L  H  V  P  G  I  W :   T  V  M  D  L  *  L  G  K  D  P  A  S  Y  F  *  K  N  L  N  M  Q  R :   R  E  R  L  K  Y  M  L  S  F  W  V  E  A  S  L  L  M  L  I  T  *  *  S  H  I  Q  K  :  E  V  E  L  F  S  A  *  K  R  P  W  L  N  L  G  *  N  V  K  M  S  T  I  *  M  L  M  L  H  Q  R  Q  P  V  T  *  T  N  I  R  L  F  C  I  A  L  G  R  T  L  N :   L  K  *  I  Q  Q  S  P  *  L  V  I  S  L  G  L  L  V  L  W  K  P  S  Q  Q  S  R :   P  Y  I  Q  D  G  S  I  Q  T  S  I  L  R  T  L  T  M  A  W :   I  *  M  C  W  W  A  L  R  R  S  A  W  I  S  R  L  H  S  P  T  H  L  A  L  E  D  T  T  R  L  F  Y  L  R  L  I  R  M  S  N  S  I  L  A  H  I  M  F  K  E  C  N  V  V  L  I  F  I  K  L  P  L  K  D  S  S  M  P  T  K  A  R  T  *  T  K  H  L  Y  *  F  I  K  K  E  S  W  H  R  R  S  R  V  C  E  V  I  F  L  T  V  L  P  F  *  L  L  *  I  F  *  N  W  V  H  L  S  I  S  C  S  *  V  *  T  V  A  A  N  T  *  F  I  S  H  L  L  G  N  E  K  Y  V  F  F  F  V  I  Y  Y  C  C  I  C  Y  G  Y  K  K  V  M  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57113" stop="57536"/>
                    <exon start="58190" stop="58395"/>
                    <exon start="58515" stop="58718"/>
                    <exon start="59170" stop="59280"/>
                    <exon start="59366" stop="59461"/>
                    <exon start="59562" stop="59607"/>
                    <exon start="59697" stop="59776"/>
                    <exon start="60193" stop="60261"/>
                    <exon start="60375" stop="60459"/>
                    <exon start="60592" stop="60746"/>
                    <exon start="60853" stop="60933"/>
                    <exon start="62052" stop="62111"/>
                    <exon start="62255" stop="62377"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1737</number_coding_nucleotides>
                  <number_encoded_amino_acids>579</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSVYHPISHLGHCFYAIVSQMVASSLASPLCTWLVAACMSVSSEKDQFSKPASSFQSSKFMGRRRKAITKFKSGSLMNGSVMNTSWHNCFGFEPCEEYYKSDGFSASFSSLFAENPFSVFGFKQVPLNRRQRRMSSAAHPGKPMAVAVQPAMEATTMKKPLMRNRRVVVTGVGVVSPIGHDPDMFYSNLLEGISGISQIEAFDCSEFPSRIAGEIKEFSTNGWVAPKLSKRADKFMLYMLTAGKKALADGGITEDLLQELDKARCGVLIGSALGGMKVFHDGIEALQVSYKKLNPFCVPFATSNMGAAMLAIDLGWMGPSYSISTACATSNFCILSASNHIIRGETDMMLCGGSDSAIIPIGLGGFSACGALSQRNSDPTRASRPWDMDRDGFVIGEGSGVLLLEELEHAKTRKAKIYAEFLGGSFTSDAYHMIEPHPEGSGVVLCIEKALAQSGVKREDVNYINAHAASTPAGDLNEYQAILHCFGKNPELKINSTKSMTGHLLGAAGAVEAIATVKAIHTGWIHPNINLENPDNGLDMNVLVGSKKERLDIKVALSNSFGFGGHNSSILFAPYKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78232" PGL_stop="73715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78232" e_stop="78103"/>
            <exon e_start="77116" e_stop="76909"/>
            <exon e_start="76041" e_stop="75881"/>
            <exon e_start="75775" e_stop="75629"/>
            <exon e_start="74533" e_stop="74457"/>
            <exon e_start="74163" e_stop="73746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.067" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78232" e_stop="78103" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77116" e_stop="76909" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.067">
            <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76041" e_stop="75881" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75775" e_stop="75629" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74533" e_stop="74457" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="0.916">
            <gDNA_exon_boundary e_start="74163" e_stop="73746" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78232" stop="78103"/>
              <exon start="77116" stop="76909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78214" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78214" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78214" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="76023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78205" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78202" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78202" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78201" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78201" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78190" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78184" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78172" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78152" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77052" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77052" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76955" stop="76909"/>
              <exon start="76041" stop="75910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76036" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75962" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75962" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75961" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75961" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74128" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74122" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCAGCAAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG : CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA : TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG : ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC : AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG : GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTT</gDNA_template>
            <first_frame> K  L  S  K  T  P  L  C  S  Y  P  I  Y  S  Q  L  R  F  K  L  L  T  Y  Q  R  R  S  A  I  G  D  W  I  P  S  S  H  A  S  V  *  S  I   : A  V  C  L  R  E  N  M  V  K  L  T  L  I  A  R  V  T  D  G  L  P  L  A  E  G  L  D  D  G  R  D  V  Q  N  A  D  F  Y  K  Q  Q  V  K  A  L  F  K  N  L  S  M  R  Q  N  D  A  S  R  M  S  I  E  T  G  P  Y  V  F  H :   Y  I  I  E  G  H  V  C  Y  L  T  M  C  D  R  S  Y  P  K  K  L  A  F  Q  Y  L  E  D  L  K  N  E  F  E  R  A  N  G  S  Q  I  E  T  A  A  R  P  Y  A  F  I  K  F   : D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D   : Q  V  S  Q  M  S  S  R  L  T  S  E  S  R  I  Y  A  D  K  A  K  D  L  N  R  Q  :  A  L  I  R  K  W  A  P  V  A  I  V  L  G  V  V  I  L  F  F  W  L  R  T  K  I  W  *  C  F  H  T  D  A  A  Q  *  R  Q  Y  C  Q  M  F  Y  S  Y  L  S  P  S  D  S  A  Q  P  R  E  P  P  H  I  T  V  I  Q  H  V  L  C  H  I  S  F  I  V  *  K  R  K  G  T  A  M  N  Y  V  P  *  P  *  E  I  T  L  I  L  A  L  F  Y  I  L  S  C  *  F  S  F  K  T  P  T  S  S  S  L  *  F  Q  L  *  N  *  L  I  S  E  Y  T  A  N  I  N  N  P  S  D  C  </first_frame>
            <second_frame>  N  S  A  K  P  L  F  V  P  I  P  F  I  P  S  S  D  S  N  S  *  L  I  K  G  G  Q  R  S  A  T  G  F  R  A  V  T  Q  A  Y  D  R  S  :  L  Y  A  C  G  K  I  W  *  S  *  L  *  L  L  A  *  L  M  A  F  L  *  P  R  G  W  M  M  V  V  M  F  K  M  Q  I  S  T  N  S  R  S  R  P  Y  S  R  T  C  R  C  A  K  M  T  L  Q  G  C  L  L  K  L  D  L  T  S  S   : I  I  S  L  K  G  M  F  V  I  *  Q  C  V  I  A  L  I  P  R  N  L  P  F  N  T  W  K  T  L  R  M  S  L  S  A  P  M  G  V  K  L  K  L  L  L  D  H  M  L  L  L  N  L  :  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  :  R  S  V  K  C  P  A  V  *  H  L  N  P  G  Y  M  L  I  K  Q  K  T  *  I  V  R :   L  *  F  E  N  G  L  L  L  L  L  C  L  E  L  S  F  S  S  S  G  S  E  Q  R  S  G  D  A  S  I  Q  M  Q  L  S  D  D  N  T  V  K  C  F  I  H  I  C  H  H  Q  T  L  H  N  P  E  N  H  L  T  L  Q  L  S  S  M  C  C  A  I  S  V  L  *  C  K  R  G  K  E  P  R  *  I  M  S  L  N  L  E  K  L  H  *  F  W  L  S  F  I  Y  C  L  V  S  L  A  S  K  L  Q  Q  V  A  H  C  S  F  S  Y  E  T  N  L  F  Q  N  I  Q  Q  I  *  T  I  L  Q  T  V </second_frame>
            <third_frame>   T  Q  Q  N  P  S  L  F  L  S  H  L  F  P  A  P  I  Q  T  L  N  L  S  K  A  V  S  D  R  R  L  D  S  E  Q  S  R  K  R  M  I  D  R :   C  M  L  A  G  K  Y  G  E  V  D  F  D  C  S  R  D  *  W  P  S  F  S  R  G  A  G  *  W  S  *  C  S  K  C  R  F  L  Q  T  A  G  Q  G  L  I  Q  E  P  V  D  A  P  K  *  R  F  K  D  V  Y  *  N  W  T  L  R  L  P  :  L  Y  H  *  R  A  C  L  L  S  D  N  V  *  S  L  L  S  Q  E  T  C  L  S  I  P  G  R  P  *  E  *  V  *  A  R  Q  W  E  S  N  *  N  C  C  *  T  I  C  F  Y  *  I  * :   Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P :   G  Q  S  N  V  Q  P  F  D  I  *  I  P  D  I  C  *  *  S  K  R  L  K  S  S   : G  F  D  S  K  M  G  S  C  C  Y  C  A  W  S  C  H  S  L  L  L  A  Q  N  K  D  L  V  M  L  P  Y  R  C  S  S  V  T  T  I  L  S  N  V  L  F  I  F  V  T  I  R  L  C  T  T  Q  R  T  T  S  H  Y  S  Y  P  A  C  V  V  P  Y  Q  F  Y  S  V  K  E  E  R  N  R  D  E  L  C  P  L  T  L  R  N  Y  I  N  F  G  S  L  L  Y  I  V  L  L  V  *  L  Q  N  S  N  K  *  L  I  V  V  S  A  M  K  L  T  Y  F  R  I  Y  S  K  Y  K  Q  S  F  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78109" stop="78103"/>
                    <exon start="77116" stop="76909"/>
                    <exon start="76041" stop="75881"/>
                    <exon start="75775" stop="75629"/>
                    <exon start="74533" stop="74457"/>
                    <exon start="74163" stop="74080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAVCLRENMVKLTLIARVTDGLPLAEGLDDGRDVQNADFYKQQVKALFKNLSMRQNDASRMSIETGPYVFHYIIEGHVCYLTMCDRSYPKKLAFQYLEDLKNEFERANGSQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVILFFWLRTKIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78232" e_stop="78103"/>
            <exon e_start="77116" e_stop="76909"/>
            <exon e_start="76041" e_stop="75881"/>
            <exon e_start="75775" e_stop="75629"/>
            <exon e_start="75197" e_stop="75099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.067" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78232" e_stop="78103" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="78102" i_stop="77117" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77116" e_stop="76909" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.067">
            <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76041" e_stop="75881" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75775" e_stop="75629" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75628" i_stop="75198" i_length="431"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="75197" e_stop="75099" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78232" stop="78103"/>
              <exon start="77116" stop="76909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78223" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78214" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78210" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="76023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78205" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78201" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78190" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78152" stop="78103"/>
              <exon start="77116" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77052" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76983" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="75197" stop="75099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76955" stop="76909"/>
              <exon start="76041" stop="75910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCAGCAAAACCCCTCTTTGTTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGACTGGATTCCGAGCAGTCACGCAAGCGTATGATCGATCG : CTGTATGCTTGCGGGAAAATATGGTGAAGTTGACTTTGATTGCTCGCGTGACTGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA : TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG : ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC : GTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAA</gDNA_template>
            <first_frame> K  L  S  K  T  P  L  C  S  Y  P  I  Y  S  Q  L  R  F  K  L  L  T  Y  Q  R  R  S  A  I  G  D  W  I  P  S  S  H  A  S  V  *  S  I   : A  V  C  L  R  E  N  M  V  K  L  T  L  I  A  R  V  T  D  G  L  P  L  A  E  G  L  D  D  G  R  D  V  Q  N  A  D  F  Y  K  Q  Q  V  K  A  L  F  K  N  L  S  M  R  Q  N  D  A  S  R  M  S  I  E  T  G  P  Y  V  F  H :   Y  I  I  E  G  H  V  C  Y  L  T  M  C  D  R  S  Y  P  K  K  L  A  F  Q  Y  L  E  D  L  K  N  E  F  E  R  A  N  G  S  Q  I  E  T  A  A  R  P  Y  A  F  I  K  F   : D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D   : R  R  E  T  K  T  E  E  S  G  C  C  G  R  L  L  R  S  K  M  V  *  K  T  T  L  R  R  P  *  N  L  I  </first_frame>
            <second_frame>  N  S  A  K  P  L  F  V  P  I  P  F  I  P  S  S  D  S  N  S  *  L  I  K  G  G  Q  R  S  A  T  G  F  R  A  V  T  Q  A  Y  D  R  S  :  L  Y  A  C  G  K  I  W  *  S  *  L  *  L  L  A  *  L  M  A  F  L  *  P  R  G  W  M  M  V  V  M  F  K  M  Q  I  S  T  N  S  R  S  R  P  Y  S  R  T  C  R  C  A  K  M  T  L  Q  G  C  L  L  K  L  D  L  T  S  S   : I  I  S  L  K  G  M  F  V  I  *  Q  C  V  I  A  L  I  P  R  N  L  P  F  N  T  W  K  T  L  R  M  S  L  S  A  P  M  G  V  K  L  K  L  L  L  D  H  M  L  L  L  N  L  :  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  :  V  G  R  Q  K  Q  R  R  V  D  A  V  E  D  C  *  E  V  K  W  F  K  R  P  H  F  D  V  L  K  I  *  * </second_frame>
            <third_frame>   T  Q  Q  N  P  S  L  F  L  S  H  L  F  P  A  P  I  Q  T  L  N  L  S  K  A  V  S  D  R  R  L  D  S  E  Q  S  R  K  R  M  I  D  R :   C  M  L  A  G  K  Y  G  E  V  D  F  D  C  S  R  D  *  W  P  S  F  S  R  G  A  G  *  W  S  *  C  S  K  C  R  F  L  Q  T  A  G  Q  G  L  I  Q  E  P  V  D  A  P  K  *  R  F  K  D  V  Y  *  N  W  T  L  R  L  P  :  L  Y  H  *  R  A  C  L  L  S  D  N  V  *  S  L  L  S  Q  E  T  C  L  S  I  P  G  R  P  *  E  *  V  *  A  R  Q  W  E  S  N  *  N  C  C  *  T  I  C  F  Y  *  I  * :   Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P :   S  G  D  K  N  R  G  E  W  M  L  W  K  I  V  E  K  *  N  G  L  K  D  H  T  S  T  S  L  K  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78109" stop="78103"/>
                    <exon start="77116" stop="76909"/>
                    <exon start="76041" stop="75881"/>
                    <exon start="75775" stop="75629"/>
                    <exon start="75197" stop="75133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAVCLRENMVKLTLIARVTDGLPLAEGLDDGRDVQNADFYKQQVKALFKNLSMRQNDASRMSIETGPYVFHYIIEGHVCYLTMCDRSYPKKLAFQYLEDLKNEFERANGSQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDRRETKTEESGCCGRLLRSKMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78209" e_stop="78140"/>
            <exon e_start="77064" e_stop="76909"/>
            <exon e_start="76041" e_stop="75881"/>
            <exon e_start="75775" e_stop="75629"/>
            <exon e_start="74533" e_stop="74457"/>
            <exon e_start="74163" e_stop="73746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.067" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78209" e_stop="78140" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78139" i_stop="77065" i_length="1075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77064" e_stop="76909" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.067">
            <gDNA_intron_boundary i_start="76908" i_stop="76042" i_length="867"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76041" e_stop="75881" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75775" e_stop="75629" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74533" e_stop="74457" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="0.916">
            <gDNA_exon_boundary e_start="74163" e_stop="73746" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78209" stop="78140"/>
              <exon start="77064" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77052" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77052" stop="76909"/>
              <exon start="76041" stop="75881"/>
              <exon start="75775" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76955" stop="76909"/>
              <exon start="76041" stop="75910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76036" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75962" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75962" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="74097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75961" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75961" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74128" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74122" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTATCCCATTTATTCCCAGCTCCGATTCAAACTCTTAACTTATCAAAGGCGGTCAGCGATCGGCGAC : TGATGGCCTTCCTTTAGCCGAGGGGCTGGATGATGGTCGTGATGTTCAAAATGCAGATTTCTACAAACAGCAGGTCAAGGCCTTATTCAAGAACCTGTCGATGCGCCAAAATGACGCTTCAAGGATGTCTATTGAAACTGGACCTTACGTCTTCCA : TTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG : ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC : AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG : GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTT</gDNA_template>
            <first_frame> F  L  S  H  L  F  P  A  P  I  Q  T  L  N  L  S  K  A  V  S  D  R  R   : L  M  A  F  L  *  P  R  G  W  M  M  V  V  M  F  K  M  Q  I  S  T  N  S  R  S  R  P  Y  S  R  T  C  R  C  A  K  M  T  L  Q  G  C  L  L  K  L  D  L  T  S  S   : I  I  S  L  K  G  M  F  V  I  *  Q  C  V  I  A  L  I  P  R  N  L  P  F  N  T  W  K  T  L  R  M  S  L  S  A  P  M  G  V  K  L  K  L  L  L  D  H  M  L  L  L  N  L  :  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  :  R  S  V  K  C  P  A  V  *  H  L  N  P  G  Y  M  L  I  K  Q  K  T  *  I  V  R :   L  *  F  E  N  G  L  L  L  L  L  C  L  E  L  S  F  S  S  S  G  S  E  Q  R  S  G  D  A  S  I  Q  M  Q  L  S  D  D  N  T  V  K  C  F  I  H  I  C  H  H  Q  T  L  H  N  P  E  N  H  L  T  L  Q  L  S  S  M  C  C  A  I  S  V  L  *  C  K  R  G  K  E  P  R  *  I  M  S  L  N  L  E  K  L  H  *  F  W  L  S  F  I  Y  C  L  V  S  L  A  S  K  L  Q  Q  V  A  H  C  S  F  S  Y  E  T  N  L  F  Q  N  I  Q  Q  I  *  T  I  L  Q  T  V </first_frame>
            <second_frame>  S  Y  P  I  Y  S  Q  L  R  F  K  L  L  T  Y  Q  R  R  S  A  I  G  D  :  *  W  P  S  F  S  R  G  A  G  *  W  S  *  C  S  K  C  R  F  L  Q  T  A  G  Q  G  L  I  Q  E  P  V  D  A  P  K  *  R  F  K  D  V  Y  *  N  W  T  L  R  L  P  :  L  Y  H  *  R  A  C  L  L  S  D  N  V  *  S  L  L  S  Q  E  T  C  L  S  I  P  G  R  P  *  E  *  V  *  A  R  Q  W  E  S  N  *  N  C  C  *  T  I  C  F  Y  *  I  * :   Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P :   G  Q  S  N  V  Q  P  F  D  I  *  I  P  D  I  C  *  *  S  K  R  L  K  S  S   : G  F  D  S  K  M  G  S  C  C  Y  C  A  W  S  C  H  S  L  L  L  A  Q  N  K  D  L  V  M  L  P  Y  R  C  S  S  V  T  T  I  L  S  N  V  L  F  I  F  V  T  I  R  L  C  T  T  Q  R  T  T  S  H  Y  S  Y  P  A  C  V  V  P  Y  Q  F  Y  S  V  K  E  E  R  N  R  D  E  L  C  P  L  T  L  R  N  Y  I  N  F  G  S  L  L  Y  I  V  L  L  V  *  L  Q  N  S  N  K  *  L  I  V  V  S  A  M  K  L  T  Y  F  R  I  Y  S  K  Y  K  Q  S  F  R  L   </second_frame>
            <third_frame>   P  I  P  F  I  P  S  S  D  S  N  S  *  L  I  K  G  G  Q  R  S  A  T :   D  G  L  P  L  A  E  G  L  D  D  G  R  D  V  Q  N  A  D  F  Y  K  Q  Q  V  K  A  L  F  K  N  L  S  M  R  Q  N  D  A  S  R  M  S  I  E  T  G  P  Y  V  F  H :   Y  I  I  E  G  H  V  C  Y  L  T  M  C  D  R  S  Y  P  K  K  L  A  F  Q  Y  L  E  D  L  K  N  E  F  E  R  A  N  G  S  Q  I  E  T  A  A  R  P  Y  A  F  I  K  F   : D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D   : Q  V  S  Q  M  S  S  R  L  T  S  E  S  R  I  Y  A  D  K  A  K  D  L  N  R  Q  :  A  L  I  R  K  W  A  P  V  A  I  V  L  G  V  V  I  L  F  F  W  L  R  T  K  I  W  *  C  F  H  T  D  A  A  Q  *  R  Q  Y  C  Q  M  F  Y  S  Y  L  S  P  S  D  S  A  Q  P  R  E  P  P  H  I  T  V  I  Q  H  V  L  C  H  I  S  F  I  V  *  K  R  K  G  T  A  M  N  Y  V  P  *  P  *  E  I  T  L  I  L  A  L  F  Y  I  L  S  C  *  F  S  F  K  T  P  T  S  S  S  L  *  F  Q  L  *  N  *  L  I  S  E  Y  T  A  N  I  N  N  P  S  D  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78168" stop="78140"/>
                    <exon start="77064" stop="76909"/>
                    <exon start="76041" stop="75881"/>
                    <exon start="75775" stop="75629"/>
                    <exon start="74533" stop="74457"/>
                    <exon start="74163" stop="74080"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKGGQRSATDGLPLAEGLDDGRDVQNADFYKQQVKALFKNLSMRQNDASRMSIETGPYVFHYIIEGHVCYLTMCDRSYPKKLAFQYLEDLKNEFERANGSQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVILFFWLRTKIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74616" e_stop="74457"/>
            <exon e_start="74163" e_stop="73715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74616" e_stop="74457" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="74163" e_stop="73715" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74616" stop="74457"/>
              <exon start="74163" stop="73761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74534" stop="74457"/>
              <exon start="74163" stop="73715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74128" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74122" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG : GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTTATGCACGGGAGTTTGGTGCTTTGTTTACCAA</gDNA_template>
            <first_frame> P  C  S  L  P  Y  L  L  F  H  L  *  S  S  *  V  V  I  D  *  I  V  E  C  Q  F  C  R  G  Q  S  N  V  Q  P  F  D  I  *  I  P  D  I  C  *  *  S  K  R  L  K  S  S   : G  F  D  S  K  M  G  S  C  C  Y  C  A  W  S  C  H  S  L  L  L  A  Q  N  K  D  L  V  M  L  P  Y  R  C  S  S  V  T  T  I  L  S  N  V  L  F  I  F  V  T  I  R  L  C  T  T  Q  R  T  T  S  H  Y  S  Y  P  A  C  V  V  P  Y  Q  F  Y  S  V  K  E  E  R  N  R  D  E  L  C  P  L  T  L  R  N  Y  I  N  F  G  S  L  L  Y  I  V  L  L  V  *  L  Q  N  S  N  K  *  L  I  V  V  S  A  M  K  L  T  Y  F  R  I  Y  S  K  Y  K  Q  S  F  R  L  L  C  T  G  V  W  C  F  V  Y  Q </first_frame>
            <second_frame>  H  V  H  C  P  I  C  Y  S  I  Y  D  H  L  R  W  L  L  T  R  L  S  N  V  N  F  A  E  V  S  Q  M  S  S  R  L  T  S  E  S  R  I  Y  A  D  K  A  K  D  L  N  R  Q  :  A  L  I  R  K  W  A  P  V  A  I  V  L  G  V  V  I  L  F  F  W  L  R  T  K  I  W  *  C  F  H  T  D  A  A  Q  *  R  Q  Y  C  Q  M  F  Y  S  Y  L  S  P  S  D  S  A  Q  P  R  E  P  P  H  I  T  V  I  Q  H  V  L  C  H  I  S  F  I  V  *  K  R  K  G  T  A  M  N  Y  V  P  *  P  *  E  I  T  L  I  L  A  L  F  Y  I  L  S  C  *  F  S  F  K  T  P  T  S  S  S  L  *  F  Q  L  *  N  *  L  I  S  E  Y  T  A  N  I  N  N  P  S  D  C  Y  A  R  E  F  G  A  L  F  T   </second_frame>
            <third_frame>   M  F  I  A  L  F  V  I  P  F  M  I  I  L  G  G  Y  *  L  D  C  R  M  S  I  L  Q  R  S  V  K  C  P  A  V  *  H  L  N  P  G  Y  M  L  I  K  Q  K  T  *  I  V  R :   L  *  F  E  N  G  L  L  L  L  L  C  L  E  L  S  F  S  S  S  G  S  E  Q  R  S  G  D  A  S  I  Q  M  Q  L  S  D  D  N  T  V  K  C  F  I  H  I  C  H  H  Q  T  L  H  N  P  E  N  H  L  T  L  Q  L  S  S  M  C  C  A  I  S  V  L  *  C  K  R  G  K  E  P  R  *  I  M  S  L  N  L  E  K  L  H  *  F  W  L  S  F  I  Y  C  L  V  S  L  A  S  K  L  Q  Q  V  A  H  C  S  F  S  Y  E  T  N  L  F  Q  N  I  Q  Q  I  *  T  I  L  Q  T  V  M  H  G  S  L  V  L  C  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74478" stop="74457"/>
                    <exon start="74163" stop="73841"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKRLKSSGFDSKMGSCCYCAWSCHSLLLAQNKDLVMLPYRCSSVTTILSNVLFIFVTIRLCTTQRTTSHYSYPACVVPYQFYSVKEERNRDELCPLTLRNYINFGSLLYIVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="75799" e_stop="75629"/>
            <exon e_start="74533" e_stop="74457"/>
            <exon e_start="74163" e_stop="73746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="0.982"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.922"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="75799" e_stop="75629" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="74533" e_stop="74457" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="74163" e_stop="73746" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75799" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74128" stop="73749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74122" stop="73746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC : AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG : GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAAAGAGGAAAGGAACCGCGATGAATTATGTCCCTTAACCTTGAGAAATTACATTAATTTTGGCTCTCTTTTATATATTGTCTTGTTAGTTTAGCTTCAAAACTCCAACAAGTAGCTCATTGTAGTTTCAGCTATGAAACTAACTTATTTCAGAATATACAGCAAATATAAACAATCCTTCAGACTGTT</gDNA_template>
            <first_frame> M  *  F  T  L  L  *  K  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  :  R  S  V  K  C  P  A  V  *  H  L  N  P  G  Y  M  L  I  K  Q  K  T  *  I  V  R :   L  *  F  E  N  G  L  L  L  L  L  C  L  E  L  S  F  S  S  S  G  S  E  Q  R  S  G  D  A  S  I  Q  M  Q  L  S  D  D  N  T  V  K  C  F  I  H  I  C  H  H  Q  T  L  H  N  P  E  N  H  L  T  L  Q  L  S  S  M  C  C  A  I  S  V  L  *  C  K  R  G  K  E  P  R  *  I  M  S  L  N  L  E  K  L  H  *  F  W  L  S  F  I  Y  C  L  V  S  L  A  S  K  L  Q  Q  V  A  H  C  S  F  S  Y  E  T  N  L  F  Q  N  I  Q  Q  I  *  T  I  L  Q  T  V </first_frame>
            <second_frame>  C  D  L  P  C  C  K  R  Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P :   G  Q  S  N  V  Q  P  F  D  I  *  I  P  D  I  C  *  *  S  K  R  L  K  S  S   : G  F  D  S  K  M  G  S  C  C  Y  C  A  W  S  C  H  S  L  L  L  A  Q  N  K  D  L  V  M  L  P  Y  R  C  S  S  V  T  T  I  L  S  N  V  L  F  I  F  V  T  I  R  L  C  T  T  Q  R  T  T  S  H  Y  S  Y  P  A  C  V  V  P  Y  Q  F  Y  S  V  K  E  E  R  N  R  D  E  L  C  P  L  T  L  R  N  Y  I  N  F  G  S  L  L  Y  I  V  L  L  V  *  L  Q  N  S  N  K  *  L  I  V  V  S  A  M  K  L  T  Y  F  R  I  Y  S  K  Y  K  Q  S  F  R  L   </second_frame>
            <third_frame>   V  I  Y  P  V  V  K  D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D   : Q  V  S  Q  M  S  S  R  L  T  S  E  S  R  I  Y  A  D  K  A  K  D  L  N  R  Q  :  A  L  I  R  K  W  A  P  V  A  I  V  L  G  V  V  I  L  F  F  W  L  R  T  K  I  W  *  C  F  H  T  D  A  A  Q  *  R  Q  Y  C  Q  M  F  Y  S  Y  L  S  P  S  D  S  A  Q  P  R  E  P  P  H  I  T  V  I  Q  H  V  L  C  H  I  S  F  I  V  *  K  R  K  G  T  A  M  N  Y  V  P  *  P  *  E  I  T  L  I  L  A  L  F  Y  I  L  S  C  *  F  S  F  K  T  P  T  S  S  S  L  *  F  Q  L  *  N  *  L  I  S  E  Y  T  A  N  I  N  N  P  S  D  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74478" stop="74457"/>
                    <exon start="74163" stop="73841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKRLKSSGFDSKMGSCCYCAWSCHSLLLAQNKDLVMLPYRCSSVTTILSNVLFIFVTIRLCTTQRTTSHYSYPACVVPYQFYSVKEERNRDELCPLTLRNYINFGSLLYIVLLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75797" stop="75629"/>
                    <exon start="74533" stop="74457"/>
                    <exon start="74163" stop="74080"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIYPVVKDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVILFFWLRTKIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="76227" e_stop="75881"/>
            <exon e_start="75775" e_stop="75575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.972" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="76227" e_stop="75881" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75775" e_stop="75575" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76227" stop="75881"/>
              <exon start="75775" stop="75575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGCATTTCAATCATTAACGCATCCAAAGTATGTGAACTTCCGGAGTAATTACTGTTGCCGTAACTACTTTTTTTGTCATGTATGCTTTCTGTACCACCAGTAATATTGCTCTTCTGTCTCTATTTCACCCTCTTGAGAAAGTTTACTCCATGTATATAGTATTCTCTTAACCCGTGCTCTCAGTTATATCATTGAAGGGCATGTTTGTTATCTGACAATGTGTGATCGCTCTTATCCCAAGAAACTTGCCTTTCAATACCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG : ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTG</gDNA_template>
            <first_frame> F  G  I  S  I  I  N  A  S  K  V  C  E  L  P  E  *  L  L  L  P  *  L  L  F  L  S  C  M  L  S  V  P  P  V  I  L  L  F  C  L  Y  F  T  L  L  R  K  F  T  P  C  I  *  Y  S  L  N  P  C  S  Q  L  Y  H  *  R  A  C  L  L  S  D  N  V  *  S  L  L  S  Q  E  T  C  L  S  I  P  G  R  P  *  E  *  V  *  A  R  Q  W  E  S  N  *  N  C  C  *  T  I  C  F  Y  *  I  * :   Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P  *  V  S  H  S  N  I  P  L  L  *  T  I  P  R  S  F   </first_frame>
            <second_frame>  L  A  F  Q  S  L  T  H  P  K  Y  V  N  F  R  S  N  Y  C  C  R  N  Y  F  F  C  H  V  C  F  L  Y  H  Q  *  Y  C  S  S  V  S  I  S  P  S  *  E  S  L  L  H  V  Y  S  I  L  L  T  R  A  L  S  Y  I  I  E  G  H  V  C  Y  L  T  M  C  D  R  S  Y  P  K  K  L  A  F  Q  Y  L  E  D  L  K  N  E  F  E  R  A  N  G  S  Q  I  E  T  A  A  R  P  Y  A  F  I  K  F   : D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D  R  K  F  L  I  L  T  F  L  F  C  E  Q  Y  L  V  H  S  </second_frame>
            <third_frame>   W  H  F  N  H  *  R  I  Q  S  M  *  T  S  G  V  I  T  V  A  V  T  T  F  F  V  M  Y  A  F  C  T  T  S  N  I  A  L  L  S  L  F  H  P  L  E  K  V  Y  S  M  Y  I  V  F  S  *  P  V  L  S  V  I  S  L  K  G  M  F  V  I  *  Q  C  V  I  A  L  I  P  R  N  L  P  F  N  T  W  K  T  L  R  M  S  L  S  A  P  M  G  V  K  L  K  L  L  L  D  H  M  L  L  L  N  L  :  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  V  S  F  S  F  *  H  S  S  F  V  N  N  T  S  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76088" stop="75881"/>
                    <exon start="75775" stop="75576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLLHVYSILLTRALSYIIEGHVCYLTMCDRSYPKKLAFQYLEDLKNEFERANGSQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDRKFLILTFLFCEQYLVHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="94322" PGL_stop="90779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94322" e_stop="93940"/>
            <exon e_start="92770" e_stop="92748"/>
            <exon e_start="91162" e_stop="90822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94322" e_stop="93940" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93939" i_stop="92771" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92770" e_stop="92748" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.844" acc_prob="0.990">
            <gDNA_intron_boundary i_start="92747" i_stop="91163" i_length="1585"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="91162" e_stop="90822" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94322" stop="93940"/>
              <exon start="92770" stop="92748"/>
              <exon start="91162" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGTATCGATAAATTTCCAAAGAGTTCTGGTTCAAAGACTTCAGTAAAGAAGGGTAAGAATACTGACTTCAGCTCTAGAGGTGGTCTGACAAAGACAAGGGTTTCTGCTGTATCTAAGATTGTGGACGACAATGATGAGTATGATGATATGGTATTTGATCCCGAAGACTCCGAAGGCATGGGCCCCGATGAAGAAGAGGAAGACTATGAGACCATGACGGGTGAAATTCATGAAAACTTTGACAACGGGGAACCAAGATTGAGCCATGATTCAGAGAAGTTGGAAAACTCTGGATCAGAGAATGGTGATGTTCTAAGATCATTTTCTCAAGTGAACTCTGCTTCAGAAGCTGTATTGCCTTCTATGGTCTCTAACAAATT : GTTATCAGGGAGCTCAATAAAAG : CTCCAAGATCATTCTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTGATCCAAAGCATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAGTTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAAGGAGGTCAAGGTAGATGGCGCTACTATCATCTAAAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTGTAGTAGTTGTCCCAGAATATATGTTGTAGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTT</gDNA_template>
            <first_frame> R  S  I  D  K  F  P  K  S  S  G  S  K  T  S  V  K  K  G  K  N  T  D  F  S  S  R  G  G  L  T  K  T  R  V  S  A  V  S  K  I  V  D  D  N  D  E  Y  D  D  M  V  F  D  P  E  D  S  E  G  M  G  P  D  E  E  E  E  D  Y  E  T  M  T  G  E  I  H  E  N  F  D  N  G  E  P  R  L  S  H  D  S  E  K  L  E  N  S  G  S  E  N  G  D  V  L  R  S  F  S  Q  V  N  S  A  S  E  A  V  L  P  S  M  V  S  N  K  L :   L  S  G  S  S  I  K   : A  P  R  S  F  F  S  L  S  T  F  R  S  K  G  S  D  S  K  P  K  *  S  K  A  *  I  A  L  S  K  Y  K  V  P  L  V  L  G  I  A  L  I  A  H  V  T  S  D  Y  I  S  K  Q  G  G  Q  G  R  W  R  Y  Y  H  L  K  Y  V  V  Y  L  Y  L  V  I  T  G  L  L  K  P  C  L  C  F  *  L  F  V  V  V  V  P  E  Y  M  L  *  R  T  I  A  E  Y  *  C  D  F  G  S  H  S  I  L </first_frame>
            <second_frame>  G  V  S  I  N  F  Q  R  V  L  V  Q  R  L  Q  *  R  R  V  R  I  L  T  S  A  L  E  V  V  *  Q  R  Q  G  F  L  L  Y  L  R  L  W  T  T  M  M  S  M  M  I  W  Y  L  I  P  K  T  P  K  A  W  A  P  M  K  K  R  K  T  M  R  P  *  R  V  K  F  M  K  T  L  T  T  G  N  Q  D  *  A  M  I  Q  R  S  W  K  T  L  D  Q  R  M  V  M  F  *  D  H  F  L  K  *  T  L  L  Q  K  L  Y  C  L  L  W  S  L  T  N   : C  Y  Q  G  A  Q  *  K  :  L  Q  D  H  S  S  P  C  R  H  S  E  A  R  E  V  T  Q  S  Q  S  D  P  K  H  R  *  L  F  Q  S  I  K  F  H  *  F  L  E  L  P  *  L  H  T  *  L  Q  T  I  F  R  S  K  E  V  K  V  D  G  A  T  I  I  *  N  M  L  Y  T  C  T  *  *  S  R  G  F  *  S  L  A  C  A  F  S  C  L  *  *  L  S  Q  N  I  C  C  R  G  Q  *  R  N  I  N  V  I  L  V  V  I  A  F   </second_frame>
            <third_frame>   E  Y  R  *  I  S  K  E  F  W  F  K  D  F  S  K  E  G  *  E  Y  *  L  Q  L  *  R  W  S  D  K  D  K  G  F  C  C  I  *  D  C  G  R  Q  *  *  V  *  *  Y  G  I  *  S  R  R  L  R  R  H  G  P  R  *  R  R  G  R  L  *  D  H  D  G  *  N  S  *  K  L  *  Q  R  G  T  K  I  E  P  *  F  R  E  V  G  K  L  W  I  R  E  W  *  C  S  K  I  I  F  S  S  E  L  C  F  R  S  C  I  A  F  Y  G  L  *  Q  I  :  V  I  R  E  L  N  K  S :   S  K  I  I  L  L  L  V  D  I  Q  K  Q  G  K  *  L  K  A  K  V  I  Q  S  I  D  S  S  F  K  V  *  S  S  T  S  S  W  N  C  L  D  C  T  R  N  F  R  L  Y  F  E  A  R  R  S  R  *  M  A  L  L  S  S  K  I  C  C  I  L  V  L  S  N  H  G  A  S  E  A  L  L  V  L  L  A  V  C  S  S  C  P  R  I  Y  V  V  E  D  N  S  G  I  L  M  *  F  W  *  S  *  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94322" stop="93940"/>
                    <exon start="92770" stop="92748"/>
                    <exon start="91162" stop="91098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSIDKFPKSSGSKTSVKKGKNTDFSSRGGLTKTRVSAVSKIVDDNDEYDDMVFDPEDSEGMGPDEEEEDYETMTGEIHENFDNGEPRLSHDSEKLENSGSENGDVLRSFSQVNSASEAVLPSMVSNKLLSGSSIKAPRSFFSLSTFRSKGSDSKPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93530" e_stop="93449"/>
            <exon e_start="92831" e_stop="92748"/>
            <exon e_start="91162" e_stop="90779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.903" acc_prob="0.584" e_score="0.927"/>
          <exon-intron don_prob="0.844" acc_prob="0.990" e_score="0.952"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="93530" e_stop="93449" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.903" acc_prob="0.584">
            <gDNA_intron_boundary i_start="93448" i_stop="92832" i_length="617"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="92831" e_stop="92748" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.844" acc_prob="0.990">
            <gDNA_intron_boundary i_start="92747" i_stop="91163" i_length="1585"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="91162" e_stop="90779" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93530" stop="93449"/>
              <exon start="92831" stop="92748"/>
              <exon start="91162" stop="90779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGAAAGTCAAGAATGGGTTTCTCTCAGGATCATCAATCTGATGATAGCTTTTATGAGAATGAGTATTTCAGTGAACAAG : TTCAAGCCTTGCGCAGTTCAATTCCAGCACCACCAGCTAACTTCAAATTGCGTGAGGATCAGTTATCAGGGAGCTCAATAAAAG : CTCCAAGATCATTCTTCTCCTTGTCGACATTCAGAAGCAAGGGAAGTGACTCAAAGCCAAAGTGATCCAAAGCATAGATAGCTCTTTCAAAGTATAAAGTTCCACTAGTTCTTGGAATTGCCTTGATTGCACACGTAACTTCAGACTATATTTCGAAGCAAGGAGGTCAAGGTAGATGGCGCTACTATCATCTAAAATATGTTGTATACTTGTACTTAGTAATCACGGGGCTTCTGAAGCCTTGCTTGTGCTTTTAGCTGTTTGTAGTAGTTGTCCCAGAATATATGTTGTAGAGGACAATAGCGGAATATTAATGTGATTTTGGTAGTCATAGCATTCTTTCTTATGTTGTTGTTTACTCTTGATTTTTTTGGTAAATATCAG</gDNA_template>
            <first_frame> L  R  K  S  R  M  G  F  S  Q  D  H  Q  S  D  D  S  F  Y  E  N  E  Y  F  S  E  Q   : V  Q  A  L  R  S  S  I  P  A  P  P  A  N  F  K  L  R  E  D  Q  L  S  G  S  S  I  K   : A  P  R  S  F  F  S  L  S  T  F  R  S  K  G  S  D  S  K  P  K  *  S  K  A  *  I  A  L  S  K  Y  K  V  P  L  V  L  G  I  A  L  I  A  H  V  T  S  D  Y  I  S  K  Q  G  G  Q  G  R  W  R  Y  Y  H  L  K  Y  V  V  Y  L  Y  L  V  I  T  G  L  L  K  P  C  L  C  F  *  L  F  V  V  V  V  P  E  Y  M  L  *  R  T  I  A  E  Y  *  C  D  F  G  S  H  S  I  L  S  Y  V  V  V  Y  S  *  F  F  W  *  I  S  </first_frame>
            <second_frame>  *  E  S  Q  E  W  V  S  L  R  I  I  N  L  M  I  A  F  M  R  M  S  I  S  V  N  K  :  F  K  P  C  A  V  Q  F  Q  H  H  Q  L  T  S  N  C  V  R  I  S  Y  Q  G  A  Q  *  K  :  L  Q  D  H  S  S  P  C  R  H  S  E  A  R  E  V  T  Q  S  Q  S  D  P  K  H  R  *  L  F  Q  S  I  K  F  H  *  F  L  E  L  P  *  L  H  T  *  L  Q  T  I  F  R  S  K  E  V  K  V  D  G  A  T  I  I  *  N  M  L  Y  T  C  T  *  *  S  R  G  F  *  S  L  A  C  A  F  S  C  L  *  *  L  S  Q  N  I  C  C  R  G  Q  *  R  N  I  N  V  I  L  V  V  I  A  F  F  L  M  L  L  F  T  L  D  F  F  G  K  Y  Q </second_frame>
            <third_frame>   K  K  V  K  N  G  F  L  S  G  S  S  I  *  *  *  L  L  *  E  *  V  F  Q  *  T  S :   S  S  L  A  Q  F  N  S  S  T  T  S  *  L  Q  I  A  *  G  S  V  I  R  E  L  N  K  S :   S  K  I  I  L  L  L  V  D  I  Q  K  Q  G  K  *  L  K  A  K  V  I  Q  S  I  D  S  S  F  K  V  *  S  S  T  S  S  W  N  C  L  D  C  T  R  N  F  R  L  Y  F  E  A  R  R  S  R  *  M  A  L  L  S  S  K  I  C  C  I  L  V  L  S  N  H  G  A  S  E  A  L  L  V  L  L  A  V  C  S  S  C  P  R  I  Y  V  V  E  D  N  S  G  I  L  M  *  F  W  *  S  *  H  S  F  L  C  C  C  L  L  L  I  F  L  V  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93530" stop="93449"/>
                    <exon start="92831" stop="92748"/>
                    <exon start="91162" stop="91098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRKSRMGFSQDHQSDDSFYENEYFSEQVQALRSSIPAPPANFKLREDQLSGSSIKAPRSFFSLSTFRSKGSDSKPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="107442" PGL_stop="106879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107442" e_stop="106879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="107442" e_stop="106879" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107442" stop="106921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107398" stop="106879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107276" stop="106921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201952" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCACCTGCTTCAACCGACAGCTTTCCTCCAGGCACATTTCAAAAAAAGAGACCAAGGTTTCAGAAGGAAATGCTGAATTCAAGCGCATTAAGGCAGGGAGGAATTGGAGAAGCTAGTGGAAACAAGAATTGGGGGAATTCAGTGAGGGAGTTGACACAGGCAATACTAAAATTTGGGGAAGCATATGAACAAACAGAGACCGCGAAACTGCATCAAATGGTGGAGATGGAGAAGCAGAGAATGAAATTTGCGAAAGATATGGAATTGCAGAGAATGCAGTTCTTCATGAATACACAATTGGAAATTGCACAGCTTAAGCACAGGAGAAGTGAAAACAGCAACCATCACAGCAACAACCATGCCGCCGCCGCCAGCAACCATAACAACAACAACAACAACAGTGATAACAGTATTTAAGGTGTAATAAAGATCCATGAGGCTCAGTATCTGACAGAGGTTTGTATTTGTAATGTGTTTAGTTTTACTGCTAAACTTCTTACTTCATTTGAAAACCAAGTGGTAGAATATTATATACTTCATTAATTCTCAATTGGAAGTTTA</gDNA_template>
            <first_frame> L  S  P  A  S  T  D  S  F  P  P  G  T  F  Q  K  K  R  P  R  F  Q  K  E  M  L  N  S  S  A  L  R  Q  G  G  I  G  E  A  S  G  N  K  N  W  G  N  S  V  R  E  L  T  Q  A  I  L  K  F  G  E  A  Y  E  Q  T  E  T  A  K  L  H  Q  M  V  E  M  E  K  Q  R  M  K  F  A  K  D  M  E  L  Q  R  M  Q  F  F  M  N  T  Q  L  E  I  A  Q  L  K  H  R  R  S  E  N  S  N  H  H  S  N  N  H  A  A  A  A  S  N  H  N  N  N  N  N  N  S  D  N  S  I  *  G  V  I  K  I  H  E  A  Q  Y  L  T  E  V  C  I  C  N  V  F  S  F  T  A  K  L  L  T  S  F  E  N  Q  V  V  E  Y  Y  I  L  H  *  F  S  I  G  S  L </first_frame>
            <second_frame>  F  H  L  L  Q  P  T  A  F  L  Q  A  H  F  K  K  R  D  Q  G  F  R  R  K  C  *  I  Q  A  H  *  G  R  E  E  L  E  K  L  V  E  T  R  I  G  G  I  Q  *  G  S  *  H  R  Q  Y  *  N  L  G  K  H  M  N  K  Q  R  P  R  N  C  I  K  W  W  R  W  R  S  R  E  *  N  L  R  K  I  W  N  C  R  E  C  S  S  S  *  I  H  N  W  K  L  H  S  L  S  T  G  E  V  K  T  A  T  I  T  A  T  T  M  P  P  P  P  A  T  I  T  T  T  T  T  T  V  I  T  V  F  K  V  *  *  R  S  M  R  L  S  I  *  Q  R  F  V  F  V  M  C  L  V  L  L  L  N  F  L  L  H  L  K  T  K  W  *  N  I  I  Y  F  I  N  S  Q  L  E  V   </second_frame>
            <third_frame>   F  T  C  F  N  R  Q  L  S  S  R  H  I  S  K  K  E  T  K  V  S  E  G  N  A  E  F  K  R  I  K  A  G  R  N  W  R  S  *  W  K  Q  E  L  G  E  F  S  E  G  V  D  T  G  N  T  K  I  W  G  S  I  *  T  N  R  D  R  E  T  A  S  N  G  G  D  G  E  A  E  N  E  I  C  E  R  Y  G  I  A  E  N  A  V  L  H  E  Y  T  I  G  N  C  T  A  *  A  Q  E  K  *  K  Q  Q  P  S  Q  Q  Q  P  C  R  R  R  Q  Q  P  *  Q  Q  Q  Q  Q  Q  *  *  Q  Y  L  R  C  N  K  D  P  *  G  S  V  S  D  R  G  L  Y  L  *  C  V  *  F  Y  C  *  T  S  Y  F  I  *  K  P  S  G  R  I  L  Y  T  S  L  I  L  N  W  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107442" stop="107023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPASTDSFPPGTFQKKRPRFQKEMLNSSALRQGGIGEASGNKNWGNSVRELTQAILKFGEAYEQTETAKLHQMVEMEKQRMKFAKDMELQRMQFFMNTQLEIAQLKHRRSENSNHHSNNHAAAASNHNNNNNNSDNSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="106922" PGL_stop="107595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106922" e_stop="107595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="106922" e_stop="107595" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106922" stop="107595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106922" stop="107479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGGTTTTCAAATGAAGTAAGAAGTTTAGCAGTAAAACTAAACACATTACAAATACAAACCTCTGTCAGATACTGAGCCTCATGGATCTTTATTACACCTTAAATACTGTTATCACTGTTGTTGTTGTTGTTGTTATGGTTGCTGGCGGCGGCGGCATGGTTGTTGCTGTGATGGTTGCTGTTTTCACTTCTCCTGTGCTTAAGCTGTGCAATTTCCAATTGTGTATTCATGAAGAACTGCATTCTCTGCAATTCCATATCTTTCGCAAATTTCATTCTCTGCTTCTCCATCTCCACCATTTGATGCAGTTTCGCGGTCTCTGTTTGTTCATATGCTTCCCCAAATTTTAGTATTGCCTGTGTCAACTCCCTCACTGAATTCCCCCAATTCTTGTTTCCACTAGCTTCTCCAATTCCTCCCTGCCTTAATGCGCTTGAATTCAGCATTTCCTTCTGAAACCTTGGTCTCTTTTTTTGAAATGTGCCTGGAGGAAAGCTGTCGGTTGAAGCAGGTGAAAGGTCCGGTTCAGACTCCGATTCCGATGTGTCTGAATCCATGTGAGGCCTTTTCCGGGACGGTTGCTTTTGTTTCTGCAGTTGTTGATGTTGTCGGAGCTGAGGAAGGGACCTGACTCCCATAGGAATACCCATAGGCACATGTTGGTTACCTGA</gDNA_template>
            <first_frame> T  W  F  S  N  E  V  R  S  L  A  V  K  L  N  T  L  Q  I  Q  T  S  V  R  Y  *  A  S  W  I  F  I  T  P  *  I  L  L  S  L  L  L  L  L  L  L  W  L  L  A  A  A  A  W  L  L  L  *  W  L  L  F  S  L  L  L  C  L  S  C  A  I  S  N  C  V  F  M  K  N  C  I  L  C  N  S  I  S  F  A  N  F  I  L  C  F  S  I  S  T  I  *  C  S  F  A  V  S  V  C  S  Y  A  S  P  N  F  S  I  A  C  V  N  S  L  T  E  F  P  Q  F  L  F  P  L  A  S  P  I  P  P  C  L  N  A  L  E  F  S  I  S  F  *  N  L  G  L  F  F  *  N  V  P  G  G  K  L  S  V  E  A  G  E  R  S  G  S  D  S  D  S  D  V  S  E  S  M  *  G  L  F  R  D  G  C  F  C  F  C  S  C  *  C  C  R  S  *  G  R  D  L  T  P  I  G  I  P  I  G  T  C  W  L  P   </first_frame>
            <second_frame>  L  G  F  Q  M  K  *  E  V  *  Q  *  N  *  T  H  Y  K  Y  K  P  L  S  D  T  E  P  H  G  S  L  L  H  L  K  Y  C  Y  H  C  C  C  C  C  C  Y  G  C  W  R  R  R  H  G  C  C  C  D  G  C  C  F  H  F  S  C  A  *  A  V  Q  F  P  I  V  Y  S  *  R  T  A  F  S  A  I  P  Y  L  S  Q  I  S  F  S  A  S  P  S  P  P  F  D  A  V  S  R  S  L  F  V  H  M  L  P  Q  I  L  V  L  P  V  S  T  P  S  L  N  S  P  N  S  C  F  H  *  L  L  Q  F  L  P  A  L  M  R  L  N  S  A  F  P  S  E  T  L  V  S  F  F  E  M  C  L  E  E  S  C  R  L  K  Q  V  K  G  P  V  Q  T  P  I  P  M  C  L  N  P  C  E  A  F  S  G  T  V  A  F  V  S  A  V  V  D  V  V  G  A  E  E  G  T  *  L  P  *  E  Y  P  *  A  H  V  G  Y  L  </second_frame>
            <third_frame>   L  V  F  K  *  S  K  K  F  S  S  K  T  K  H  I  T  N  T  N  L  C  Q  I  L  S  L  M  D  L  Y  Y  T  L  N  T  V  I  T  V  V  V  V  V  V  M  V  A  G  G  G  G  M  V  V  A  V  M  V  A  V  F  T  S  P  V  L  K  L  C  N  F  Q  L  C  I  H  E  E  L  H  S  L  Q  F  H  I  F  R  K  F  H  S  L  L  L  H  L  H  H  L  M  Q  F  R  G  L  C  L  F  I  C  F  P  K  F  *  Y  C  L  C  Q  L  P  H  *  I  P  P  I  L  V  S  T  S  F  S  N  S  S  L  P  *  C  A  *  I  Q  H  F  L  L  K  P  W  S  L  F  L  K  C  A  W  R  K  A  V  G  *  S  R  *  K  V  R  F  R  L  R  F  R  C  V  *  I  H  V  R  P  F  P  G  R  L  L  L  F  L  Q  L  L  M  L  S  E  L  R  K  G  P  D  S  H  R  N  T  H  R  H  M  L  V  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106939" stop="107274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKFSSKTKHITNTNLCQILSLMDLYYTLNTVITVVVVVVMVAGGGGMVVAVMVAVFTSPVLKLCNFQLCIHEELHSLQFHIFRKFHSLLLHLHHLMQFRGLCLFICFPKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107328" stop="107555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQFLPALMRLNSAFPSETLVSFFEMCLEESCRLKQVKGPVQTPIPMCLNPCEAFSGTVAFVSAVVDVVGAEEGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="108230" PGL_stop="107494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108230" e_stop="107494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="108230" e_stop="107494" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108230" stop="107494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108228" stop="107858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCCCTCCCCTCATTATATACCGCCGGTCAACCGAAACCCTAACCAAAAATTCCTTCTTCATCATCTTCTCACTCAACTCTCGGATCGGCGGCGCACCGGAATCGGTTAAAGTTTATGGAGAACGACGAAGAAACTCAGTCCGGTGGTTCTGGATCTCCGGAATCACCACGATCTAACGGGAGGATAACGGTGACGGTAGCATCAGCGCCTCCTCAGAACACCTTGACGTTGGCTCTACCGATACAGCAATCGAGACCTGCTGGAGCGTCTGGCGGCGGTGGAGGTAGTGGTGGTGGAAGGGAGGATTGTTGGAGTGAAGAGGCTACGGCTGTACTGATCGAGGCTTGGGGTGAGCGTTACATGGAATTGAGTAGAGGTAATTTGAAGCAGAAGCACTGGAAAGATGTTGCTGACATTGTTAGCAGTCGGGAGGATTATAGAAAAACGCCTAAAACTGATATTCAGTGCAAAAATCGAATTGATACTGTAAAGAAGAAATACAAGCTGGAGAAATCTAAGATCGCTGCGGGTCAAGGACCAAGCAAGTGGCCTTTCTTTGATAAGCTCGATATGTTGATAGGTCCGACGGCTAAGATCAATCCTACCGTCGCTGCCGGACCGTCTAATTTGTATTCAGGTAACCAACATGTGCCTATGGGTATTCCTATGGGAGTCAGGTCCCTTCCTCAGCTCCGACAACATCAACAACTGCAGAAACAAAAGCAACCGTCCCGG</gDNA_template>
            <first_frame> S  P  S  P  H  Y  I  P  P  V  N  R  N  P  N  Q  K  F  L  L  H  H  L  L  T  Q  L  S  D  R  R  R  T  G  I  G  *  S  L  W  R  T  T  K  K  L  S  P  V  V  L  D  L  R  N  H  H  D  L  T  G  G  *  R  *  R  *  H  Q  R  L  L  R  T  P  *  R  W  L  Y  R  Y  S  N  R  D  L  L  E  R  L  A  A  V  E  V  V  V  V  E  G  R  I  V  G  V  K  R  L  R  L  Y  *  S  R  L  G  V  S  V  T  W  N  *  V  E  V  I  *  S  R  S  T  G  K  M  L  L  T  L  L  A  V  G  R  I  I  E  K  R  L  K  L  I  F  S  A  K  I  E  L  I  L  *  R  R  N  T  S  W  R  N  L  R  S  L  R  V  K  D  Q  A  S  G  L  S  L  I  S  S  I  C  *  *  V  R  R  L  R  S  I  L  P  S  L  P  D  R  L  I  C  I  Q  V  T  N  M  C  L  W  V  F  L  W  E  S  G  P  F  L  S  S  D  N  I  N  N  C  R  N  K  S  N  R  P   </first_frame>
            <second_frame>  V  P  P  L  I  I  Y  R  R  S  T  E  T  L  T  K  N  S  F  F  I  I  F  S  L  N  S  R  I  G  G  A  P  E  S  V  K  V  Y  G  E  R  R  R  N  S  V  R  W  F  W  I  S  G  I  T  T  I  *  R  E  D  N  G  D  G  S  I  S  A  S  S  E  H  L  D  V  G  S  T  D  T  A  I  E  T  C  W  S  V  W  R  R  W  R  *  W  W  W  K  G  G  L  L  E  *  R  G  Y  G  C  T  D  R  G  L  G  *  A  L  H  G  I  E  *  R  *  F  E  A  E  A  L  E  R  C  C  *  H  C  *  Q  S  G  G  L  *  K  N  A  *  N  *  Y  S  V  Q  K  S  N  *  Y  C  K  E  E  I  Q  A  G  E  I  *  D  R  C  G  S  R  T  K  Q  V  A  F  L  *  *  A  R  Y  V  D  R  S  D  G  *  D  Q  S  Y  R  R  C  R  T  V  *  F  V  F  R  *  P  T  C  A  Y  G  Y  S  Y  G  S  Q  V  P  S  S  A  P  T  T  S  T  T  A  E  T  K  A  T  V  P  </second_frame>
            <third_frame>   S  L  P  S  L  Y  T  A  G  Q  P  K  P  *  P  K  I  P  S  S  S  S  S  H  S  T  L  G  S  A  A  H  R  N  R  L  K  F  M  E  N  D  E  E  T  Q  S  G  G  S  G  S  P  E  S  P  R  S  N  G  R  I  T  V  T  V  A  S  A  P  P  Q  N  T  L  T  L  A  L  P  I  Q  Q  S  R  P  A  G  A  S  G  G  G  G  G  S  G  G  G  R  E  D  C  W  S  E  E  A  T  A  V  L  I  E  A  W  G  E  R  Y  M  E  L  S  R  G  N  L  K  Q  K  H  W  K  D  V  A  D  I  V  S  S  R  E  D  Y  R  K  T  P  K  T  D  I  Q  C  K  N  R  I  D  T  V  K  K  K  Y  K  L  E  K  S  K  I  A  A  G  Q  G  P  S  K  W  P  F  F  D  K  L  D  M  L  I  G  P  T  A  K  I  N  P  T  V  A  A  G  P  S  N  L  Y  S  G  N  Q  H  V  P  M  G  I  P  M  G  V  R  S  L  P  Q  L  R  Q  H  Q  Q  L  Q  K  Q  K  Q  P  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108186" stop="107494"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIPSSSSSHSTLGSAAHRNRLKFMENDEETQSGGSGSPESPRSNGRITVTVASAPPQNTLTLALPIQQSRPAGASGGGGGSGGGREDCWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVSSREDYRKTPKTDIQCKNRIDTVKKKYKLEKSKIAAGQGPSKWPFFDKLDMLIGPTAKINPTVAAGPSNLYSGNQHVPMGIPMGVRSLPQLRQHQQLQKQKQPSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="119024" PGL_stop="110227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119024" e_stop="118116"/>
            <exon e_start="117629" e_stop="117420"/>
            <exon e_start="114962" e_stop="114462"/>
            <exon e_start="113994" e_stop="113920"/>
            <exon e_start="113670" e_stop="113592"/>
            <exon e_start="112306" e_stop="112242"/>
            <exon e_start="111739" e_stop="111704"/>
            <exon e_start="111623" e_stop="111397"/>
            <exon e_start="110546" e_stop="110227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.883" e_score="0.999"/>
          <exon-intron don_prob="0.987" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="119024" e_stop="118116" e_length="909"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.883">
            <gDNA_intron_boundary i_start="118115" i_stop="117630" i_length="486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117629" e_stop="117420" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.901">
            <gDNA_intron_boundary i_start="117419" i_stop="114963" i_length="2457"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114962" e_stop="114462" e_length="501"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114461" i_stop="113995" i_length="467"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113994" e_stop="113920" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.975">
            <gDNA_intron_boundary i_start="113919" i_stop="113671" i_length="249"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113670" e_stop="113592" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.905" acc_prob="0.943">
            <gDNA_intron_boundary i_start="113591" i_stop="112307" i_length="1285"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112306" e_stop="112242" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.775" acc_prob="0.926">
            <gDNA_intron_boundary i_start="112241" i_stop="111740" i_length="502"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111739" e_stop="111704" e_length="36"/>
          </exon>
          <intron i_serial="7" don_prob="0.842" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111703" i_stop="111624" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111623" e_stop="111397" e_length="227"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111396" i_stop="110547" i_length="850"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="110546" e_stop="110227" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119024" stop="118116"/>
              <exon start="117629" stop="117420"/>
              <exon start="114962" stop="114462"/>
              <exon start="113994" stop="113920"/>
              <exon start="113670" stop="113592"/>
              <exon start="112306" stop="112242"/>
              <exon start="111739" stop="111704"/>
              <exon start="111623" stop="111397"/>
              <exon start="110546" stop="110227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119015" stop="118328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119005" stop="118429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119005" stop="118650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119002" stop="118379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119001" stop="118429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118994" stop="118493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118244" stop="118116"/>
              <exon start="117629" stop="117420"/>
              <exon start="114962" stop="114850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117624" stop="117420"/>
              <exon start="114962" stop="114462"/>
              <exon start="113994" stop="113920"/>
              <exon start="113670" stop="113632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114796" stop="114487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111602" stop="111397"/>
              <exon start="110546" stop="110242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGACGACCACAGTCCCAAAATCCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATGAGGCAGCAATCAGGAGGGCTTTATGGTCAAATGAATTTTGGGGTTGGAGGTACTTCGCTCCAGCAACAGCAGCAACAACAATTGCAGCAACAGCAATTGCAGCAACAATTTCAACAACAGCAACAGCAGCAGCAGCAACAGAACCAACAACAGCAGCAAATAGGTGGTCAGATGGGTAGCGGAAATTTAGCTAGGGCAGCTTTAATGGGACAGACTGGCCATCTGCCCATGTTATCTGGACAAGCTGCTGCTGCAGCAGCGGCTGTTGCCCAGTTCAATTTGCAATCTCAATTTTTGAATTCG : CCACGGCAGAAGGCAGGTCTAATGCAGGGGAATCAATTCCATACAGGGAATTCCCATGGCCAGTCCTTACAGGCAATGGGAATGATGGGATCTCTCAACATGAGCTCTCAGCTCAGGGCAAACGGTGCCCTGGCATATGCACAAAGGGTGAATCAAGGTCAGCTGAGGCAGCAGCAGTTGTCCCAGCAAAATCCTCTCACCACTACTCAG : AAAATATCGGCTCAGAGTCTTCCAAGGACGTCATTTGCTAACTCTCAGTTACCTGGGTTGACTCAGAATGGACAATCGGCAATTATGCAGAATAATTCTTCACAGCAGCAGTGGTTGAAGCCAATGCCTGCGATTTCTACTCCTAATTCCCCTTCCTTTCGTCTTCAACAGCAGAGGCAGCAAATGCTTCTACAGCACCAAAACTCAATGGGTTTGAACCCACAGCAGCTATCCCAAATTGTACAACAGCAGCAACAGATTGGGCACCCCCAGATGCATCAACAGCAACAGCAACAGCAACAACAACAGCAGCTTTCACATCAGCAGCAGTCTTCCCCAAGGATGGCTGCTCCAGCTGGCCAAAAATCCCTGAGTTTAACTGGCTCACAACCAGATGCCACTGGATCCGGAACAACTACTCCAGGGGGGAGTTCAAGTCAGGGGACTGAAGCAAGCAATCAGCTTCTTGGAAAGAGAAAGATACAGGATTTGGTTTCACAG : GTGGATGCGCAGGGAAAGCTTGATCCCGAAGTTGAAGATCTTCTTCTAGAGATTGCTGATGACTTCATTGATTCG : GTTACTACATTTGCTTGCAATTTGGCGAAGCATCGGAAATCTTCAACTTTGGAGTCCAAGGATGTACTGTTACATCTAG : AGAAAAACTGGCACTTGACTATTCCAGGCTTTTCAAGTGAAGAGAGGAAACAGTATCCAGAAAAT : TCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTG : ATACGTACCTTGATGGAGACCTCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATG : ATCAAGAAATGGGAGGCATAGGTTATATAGGTGTAGCATAATGGAAGTTTTTACTAGACGTTGGAGTCATCTGAAGGAACATTGCAGAATGAACCACCATGAAGGCCTGTAATTATGCAGTTTAGTTTACAGTAGCTAATTCAGCCTGTGAGGATGAAGTTGCTCAAATTTGATTTCTCCACCATACCCCTCTGGAAAACATGTTTACTATAGTCATGTAAATTACCTCCTGATGCCAAAGAATGAGGTGAAGTTGTTTGTTTTCCCCTTTATCAAACAGGTTTTATGACGTTACAAATCACAAACGGTTTTTTTTTCAA</gDNA_template>
            <first_frame> R  R  P  Q  S  Q  N  P  *  T  E  N  S  K  F  P  M  T  L  L  I  *  I  P  F  S  R  R  I  I  F  I  V  T  T  R  T  N  K  Q  M  A  E  I  P  S  S  S  P  K  L  T  Q  P  S  N  P  I  M  D  T  T  N  Q  V  T  A  G  G  A  A  P  S  T  T  S  S  N  P  G  I  T  M  T  S  P  S  N  N  N  S  I  A  Q  S  P  S  I  D  L  P  Q  I  P  L  A  Q  S  Q  Q  Q  Q  H  Q  H  Q  I  Q  M  P  Q  P  Q  Q  M  Q  Q  Q  Q  Q  Q  Q  L  T  Q  S  Q  Q  Q  Q  Q  Q  Q  Q  Q  M  Q  L  Q  Q  Q  Q  S  N  S  S  N  L  N  G  S  N  S  N  L  M  S  A  S  N  F  Q  M  Q  Q  N  L  Q  R  S  P  S  M  A  A  R  M  S  Q  L  Q  M  Q  Q  Q  Q  Q  Q  F  G  L  M  R  Q  Q  S  G  G  L  Y  G  Q  M  N  F  G  V  G  G  T  S  L  Q  Q  Q  Q  Q  Q  Q  L  Q  Q  Q  Q  L  Q  Q  Q  F  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  N  Q  Q  Q  Q  Q  I  G  G  Q  M  G  S  G  N  L  A  R  A  A  L  M  G  Q  T  G  H  L  P  M  L  S  G  Q  A  A  A  A  A  A  A  V  A  Q  F  N  L  Q  S  Q  F  L  N  S  :  P  R  Q  K  A  G  L  M  Q  G  N  Q  F  H  T  G  N  S  H  G  Q  S  L  Q  A  M  G  M  M  G  S  L  N  M  S  S  Q  L  R  A  N  G  A  L  A  Y  A  Q  R  V  N  Q  G  Q  L  R  Q  Q  Q  L  S  Q  Q  N  P  L  T  T  T  Q  :  K  I  S  A  Q  S  L  P  R  T  S  F  A  N  S  Q  L  P  G  L  T  Q  N  G  Q  S  A  I  M  Q  N  N  S  S  Q  Q  Q  W  L  K  P  M  P  A  I  S  T  P  N  S  P  S  F  R  L  Q  Q  Q  R  Q  Q  M  L  L  Q  H  Q  N  S  M  G  L  N  P  Q  Q  L  S  Q  I  V  Q  Q  Q  Q  Q  I  G  H  P  Q  M  H  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  L  S  H  Q  Q  Q  S  S  P  R  M  A  A  P  A  G  Q  K  S  L  S  L  T  G  S  Q  P  D  A  T  G  S  G  T  T  T  P  G  G  S  S  S  Q  G  T  E  A  S  N  Q  L  L  G  K  R  K  I  Q  D  L  V  S  Q  :  V  D  A  Q  G  K  L  D  P  E  V  E  D  L  L  L  E  I  A  D  D  F  I  D  S  :  V  T  T  F  A  C  N  L  A  K  H  R  K  S  S  T  L  E  S  K  D  V  L  L  H  L   : E  K  N  W  H  L  T  I  P  G  F  S  S  E  E  R  K  Q  Y  P  E  N  :  S  S  S  D  L  H  K  K  R  L  D  V  :  I  R  T  L  M  E  T  S  Q  T  E  T  S  T  N  S  S  A  K  E  T  V  R  P  V  A  G  D  S  N  H  M  I  R  P  P  S  S  D  N  M  V  S  Q  S  N  A  S  Q  M  L  H  E  M  T  R  F  *  W  S  L  E  F  L  V  Y  L  P  C  Y  L  Y  R  P  *  * :   S  R  N  G  R  H  R  L  Y  R  C  S  I  M  E  V  F  T  R  R  W  S  H  L  K  E  H  C  R  M  N  H  H  E  G  L  *  L  C  S  L  V  Y  S  S  *  F  S  L  *  G  *  S  C  S  N  L  I  S  P  P  Y  P  S  G  K  H  V  Y  Y  S  H  V  N  Y  L  L  M  P  K  N  E  V  K  L  F  V  F  P  F  I  K  Q  V  L  *  R  Y  K  S  Q  T  V  F  F  S  </first_frame>
            <second_frame>  D  D  H  S  P  K  I  P  K  L  K  I  Q  S  F  R  *  L  C  *  S  E  F  R  S  V  D  E  S  S  S  S  S  Q  H  E  P  I  N  K  W  L  K  F  R  R  L  P  Q  N  *  L  N  H  R  T  L  *  W  I  P  Q  T  K  *  P  P  A  E  L  H  R  R  R  R  R  L  I  P  E  L  R  *  L  L  L  L  T  T  I  Q  S  H  N  R  L  Q  L  T  S  L  K  S  R  *  P  N  L  S  N  S  S  I  S  I  K  F  R  C  R  N  L  N  K  C  S  S  S  S  N  S  N  *  H  N  L  N  N  S  S  S  S  S  S  K  C  S  S  S  S  N  R  V  I  R  A  I  L  T  A  V  T  A  T  *  C  P  P  L  I  S  R  C  S  K  T  C  R  D  R  P  Q  W  R  R  G  *  V  N  C  K  C  N  S  S  N  N  N  L  V  *  *  G  S  N  Q  E  G  F  M  V  K  *  I  L  G  L  E  V  L  R  S  S  N  S  S  N  N  N  C  S  N  S  N  C  S  N  N  F  N  N  S  N  S  S  S  S  N  R  T  N  N  S  S  K  *  V  V  R  W  V  A  E  I  *  L  G  Q  L  *  W  D  R  L  A  I  C  P  C  Y  L  D  K  L  L  L  Q  Q  R  L  L  P  S  S  I  C  N  L  N  F  *  I  R :   H  G  R  R  Q  V  *  C  R  G  I  N  S  I  Q  G  I  P  M  A  S  P  Y  R  Q  W  E  *  W  D  L  S  T  *  A  L  S  S  G  Q  T  V  P  W  H  M  H  K  G  *  I  K  V  S  *  G  S  S  S  C  P  S  K  I  L  S  P  L  L  R :   K  Y  R  L  R  V  F  Q  G  R  H  L  L  T  L  S  Y  L  G  *  L  R  M  D  N  R  Q  L  C  R  I  I  L  H  S  S  S  G  *  S  Q  C  L  R  F  L  L  L  I  P  L  P  F  V  F  N  S  R  G  S  K  C  F  Y  S  T  K  T  Q  W  V  *  T  H  S  S  Y  P  K  L  Y  N  S  S  N  R  L  G  T  P  R  C  I  N  S  N  S  N  S  N  N  N  S  S  F  H  I  S  S  S  L  P  Q  G  W  L  L  Q  L  A  K  N  P  *  V  *  L  A  H  N  Q  M  P  L  D  P  E  Q  L  L  Q  G  G  V  Q  V  R  G  L  K  Q  A  I  S  F  L  E  R  E  R  Y  R  I  W  F  H  R :   W  M  R  R  E  S  L  I  P  K  L  K  I  F  F  *  R  L  L  M  T  S  L  I  R :   L  L  H  L  L  A  I  W  R  S  I  G  N  L  Q  L  W  S  P  R  M  Y  C  Y  I  *  :  R  K  T  G  T  *  L  F  Q  A  F  Q  V  K  R  G  N  S  I  Q  K  I :   H  Q  V  I  S  T  K  S  V  W  M  * :   Y  V  P  *  W  R  P  H  K  P  K  Q  V  Q  I  V  V  L  R  K  L  S  D  Q  W  R  V  T  Q  I  T  *  S  D  L  Q  V  Q  T  T  W  F  H  S  L  M  L  L  K  C  C  M  R  *  Q  G  F  D  G  P  W  S  S  W  C  I  S  R  V  T  C  T  D  L  D   : D  Q  E  M  G  G  I  G  Y  I  G  V  A  *  W  K  F  L  L  D  V  G  V  I  *  R  N  I  A  E  *  T  T  M  K  A  C  N  Y  A  V  *  F  T  V  A  N  S  A  C  E  D  E  V  A  Q  I  *  F  L  H  H  T  P  L  E  N  M  F  T  I  V  M  *  I  T  S  *  C  Q  R  M  R  *  S  C  L  F  S  P  L  S  N  R  F  Y  D  V  T  N  H  K  R  F  F  F  Q </second_frame>
            <third_frame>   T  T  T  V  P  K  S  L  N  *  K  F  K  V  S  D  D  S  V  D  L  N  S  V  Q  S  T  N  H  L  H  R  H  N  T  N  Q  *  T  N  G  *  N  S  V  V  F  P  K  I  N  S  T  I  E  P  Y  N  G  Y  H  K  P  S  N  R  R  R  S  C  T  V  D  D  V  V  *  S  R  N  Y  D  D  F  S  F  *  Q  Q  F  N  R  T  I  A  F  N  *  P  P  S  N  P  V  S  P  I  S  A  T  A  A  S  A  S  N  S  D  A  A  T  S  T  N  A  A  A  A  A  T  A  I  D  T  I  S  T  T  A  A  A  A  A  A  N  A  A  P  A  A  T  E  *  F  E  Q  S  *  R  Q  *  Q  Q  L  D  V  R  L  *  F  P  D  A  A  K  L  A  E  I  A  L  N  G  G  E  D  E  S  I  A  N  A  T  A  A  T  T  I  W  F  D  E  A  A  I  R  R  A  L  W  S  N  E  F  W  G  W  R  Y  F  A  P  A  T  A  A  T  T  I  A  A  T  A  I  A  A  T  I  S  T  T  A  T  A  A  A  A  T  E  P  T  T  A  A  N  R  W  S  D  G  *  R  K  F  S  *  G  S  F  N  G  T  D  W  P  S  A  H  V  I  W  T  S  C  C  C  S  S  G  C  C  P  V  Q  F  A  I  S  I  F  E  F   : A  T  A  E  G  R  S  N  A  G  E  S  I  P  Y  R  E  F  P  W  P  V  L  T  G  N  G  N  D  G  I  S  Q  H  E  L  S  A  Q  G  K  R  C  P  G  I  C  T  K  G  E  S  R  S  A  E  A  A  A  V  V  P  A  K  S  S  H  H  Y  S   : E  N  I  G  S  E  S  S  K  D  V  I  C  *  L  S  V  T  W  V  D  S  E  W  T  I  G  N  Y  A  E  *  F  F  T  A  A  V  V  E  A  N  A  C  D  F  Y  S  *  F  P  F  L  S  S  S  T  A  E  A  A  N  A  S  T  A  P  K  L  N  G  F  E  P  T  A  A  I  P  N  C  T  T  A  A  T  D  W  A  P  P  D  A  S  T  A  T  A  T  A  T  T  T  A  A  F  T  S  A  A  V  F  P  K  D  G  C  S  S  W  P  K  I  P  E  F  N  W  L  T  T  R  C  H  W  I  R  N  N  Y  S  R  G  E  F  K  S  G  D  *  S  K  Q  S  A  S  W  K  E  K  D  T  G  F  G  F  T   : G  G  C  A  G  K  A  *  S  R  S  *  R  S  S  S  R  D  C  *  *  L  H  *  F   : G  Y  Y  I  C  L  Q  F  G  E  A  S  E  I  F  N  F  G  V  Q  G  C  T  V  T  S  R :   E  K  L  A  L  D  Y  S  R  L  F  K  *  R  E  E  T  V  S  R  K   : F  I  K  *  S  P  Q  K  A  F  G  C   : D  T  Y  L  D  G  D  L  T  N  R  N  K  Y  K  *  *  C  *  G  N  C  Q  T  S  G  G  *  L  K  S  H  D  Q  T  S  K  F  R  Q  H  G  F  T  V  *  C  F  S  N  V  A  *  D  D  K  V  L  M  V  P  G  V  L  G  V  S  P  V  L  P  V  Q  T  L  M  :  I  K  K  W  E  A  *  V  I  *  V  *  H  N  G  S  F  Y  *  T  L  E  S  S  E  G  T  L  Q  N  E  P  P  *  R  P  V  I  M  Q  F  S  L  Q  *  L  I  Q  P  V  R  M  K  L  L  K  F  D  F  S  T  I  P  L  W  K  T  C  L  L  *  S  C  K  L  P  P  D  A  K  E  *  G  E  V  V  C  F  P  L  Y  Q  T  G  F  M  T  L  Q  I  T  N  G  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118958" stop="118116"/>
                    <exon start="117629" stop="117420"/>
                    <exon start="114962" stop="114462"/>
                    <exon start="113994" stop="113920"/>
                    <exon start="113670" stop="113592"/>
                    <exon start="112306" stop="112242"/>
                    <exon start="111739" stop="111704"/>
                    <exon start="111623" stop="111450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1980</number_coding_nucleotides>
                  <number_encoded_amino_acids>660</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPFSRRIIFIVTTRTNKQMAEIPSSSPKLTQPSNPIMDTTNQVTAGGAAPSTTSSNPGITMTSPSNNNSIAQSPSIDLPQIPLAQSQQQQHQHQIQMPQPQQMQQQQQQQLTQSQQQQQQQQQMQLQQQQSNSSNLNGSNSNLMSASNFQMQQNLQRSPSMAARMSQLQMQQQQQQFGLMRQQSGGLYGQMNFGVGGTSLQQQQQQQLQQQQLQQQFQQQQQQQQQQNQQQQQIGGQMGSGNLARAALMGQTGHLPMLSGQAAAAAAAVAQFNLQSQFLNSPRQKAGLMQGNQFHTGNSHGQSLQAMGMMGSLNMSSQLRANGALAYAQRVNQGQLRQQQLSQQNPLTTTQKISAQSLPRTSFANSQLPGLTQNGQSAIMQNNSSQQQWLKPMPAISTPNSPSFRLQQQRQQMLLQHQNSMGLNPQQLSQIVQQQQQIGHPQMHQQQQQQQQQQQLSHQQQSSPRMAAPAGQKSLSLTGSQPDATGSGTTTPGGSSSQGTEASNQLLGKRKIQDLVSQVDAQGKLDPEVEDLLLEIADDFIDSVTTFACNLAKHRKSSTLESKDVLLHLEKNWHLTIPGFSSEERKQYPENSSSDLHKKRLDVIRTLMETSQTETSTNSSAKETVRPVAGDSNHMIRPPSSDNMVSQSNASQMLHEMTRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111790" e_stop="111704"/>
            <exon e_start="111623" e_stop="111188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.842" acc_prob="0.986" e_score="0.966"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="111790" e_stop="111704" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.842" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111703" i_stop="111624" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="111623" e_stop="111188" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111790" stop="111704"/>
              <exon start="111623" stop="111188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCGTGGAAACTCAGGCTACTTTTTGACATAATGTTTCTAAATCTGTGCAGTCATCAAGTGATCTCCACAAAAAGCGTTTGGATGTG : ATACGTACCTTGATGGAGACCTCACAAACCGAAACAAGTACAAATAGTAGTGCTAAGGAAACTGTCAGACCAGTGGCGGGTGACTCAAATCACATGATCAGACCTCCAAGTTCAGACAACATGGTTTCACAGTCTAATGCTTCTCAAATGTTGCATGAGATGACAAGGTTTTGATGGTCCCTGGAGTTCTTGGTGTATCTCCCGTGTTACCTGTACAGACCTTGATGGTAAGTATTACTTCTTTTAAGATGAATTCTACTGTGATTTGCTTGTTTTCTGGAGCGCTCAGCCTTTAGTGGCACTGAATTTTCATGCCCCATCAGTATGTTTGCACTTCACAAGCGATCCTTCTCTAGACCAATATCAGTTGCACATTGGATAAATGTGTTGTATGTAGTCTGGAGTCCTAAATCATATCTTGGCTGCTGCAAAATGA</gDNA_template>
            <first_frame> C  V  E  T  Q  A  T  F  *  H  N  V  S  K  S  V  Q  S  S  S  D  L  H  K  K  R  L  D  V  :  I  R  T  L  M  E  T  S  Q  T  E  T  S  T  N  S  S  A  K  E  T  V  R  P  V  A  G  D  S  N  H  M  I  R  P  P  S  S  D  N  M  V  S  Q  S  N  A  S  Q  M  L  H  E  M  T  R  F  *  W  S  L  E  F  L  V  Y  L  P  C  Y  L  Y  R  P  *  W  *  V  L  L  L  L  R  *  I  L  L  *  F  A  C  F  L  E  R  S  A  F  S  G  T  E  F  S  C  P  I  S  M  F  A  L  H  K  R  S  F  S  R  P  I  S  V  A  H  W  I  N  V  L  Y  V  V  W  S  P  K  S  Y  L  G  C  C  K  M  </first_frame>
            <second_frame>  A  W  K  L  R  L  L  F  D  I  M  F  L  N  L  C  S  H  Q  V  I  S  T  K  S  V  W  M  * :   Y  V  P  *  W  R  P  H  K  P  K  Q  V  Q  I  V  V  L  R  K  L  S  D  Q  W  R  V  T  Q  I  T  *  S  D  L  Q  V  Q  T  T  W  F  H  S  L  M  L  L  K  C  C  M  R  *  Q  G  F  D  G  P  W  S  S  W  C  I  S  R  V  T  C  T  D  L  D  G  K  Y  Y  F  F  *  D  E  F  Y  C  D  L  L  V  F  W  S  A  Q  P  L  V  A  L  N  F  H  A  P  S  V  C  L  H  F  T  S  D  P  S  L  D  Q  Y  Q  L  H  I  G  *  M  C  C  M  *  S  G  V  L  N  H  I  L  A  A  A  K  * </second_frame>
            <third_frame>   R  G  N  S  G  Y  F  L  T  *  C  F  *  I  C  A  V  I  K  *  S  P  Q  K  A  F  G  C   : D  T  Y  L  D  G  D  L  T  N  R  N  K  Y  K  *  *  C  *  G  N  C  Q  T  S  G  G  *  L  K  S  H  D  Q  T  S  K  F  R  Q  H  G  F  T  V  *  C  F  S  N  V  A  *  D  D  K  V  L  M  V  P  G  V  L  G  V  S  P  V  L  P  V  Q  T  L  M  V  S  I  T  S  F  K  M  N  S  T  V  I  C  L  F  S  G  A  L  S  L  *  W  H  *  I  F  M  P  H  Q  Y  V  C  T  S  Q  A  I  L  L  *  T  N  I  S  C  T  L  D  K  C  V  V  C  S  L  E  S  *  I  I  S  W  L  L  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111763" stop="111704"/>
                    <exon start="111623" stop="111450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNVSKSVQSSSDLHKKRLDVIRTLMETSQTETSTNSSAKETVRPVAGDSNHMIRPPSSDNMVSQSNASQMLHEMTRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="123832" PGL_stop="124384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123832" e_stop="124384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123832" e_stop="124384" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123832" stop="124384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTCTGGAATTTGTTTATGTCCTTGGGGTTTTCAATATTTCTCCTACAAATAATCCATCACTGCTCCCTAGCTTGTATGAAGATCTATAATTTATCTATTATCACTTTAGATTTCACCAAAAAAACTGCTTCCGTTAACGTGCCTACATAGCACTAAACAATCTTCTTCGTTGCCTATCATCCTTGATTGAAGTTAATGATTCTCACTATAAAACAATGGTAGTGAATATCAATTATCTGTTTCTTTTATTTGACTTTAGAAGTTTTCTAGCATTTGTTTTGTATTCATCAGATTTTGAAATATTTAGGTATAGATTGTGGTTTATGCGGGCCGTCTAAATTGTAGATTCATATTACCACTGTTGTATCAACATTATTTGTTTGTCATATGCCTTGAAGAGTTTAGCTTAAATAAGTCTGGAAATTACTCTTATAAGCATATATGTCTTAAAAATAAGACTGGATTAGTCTAGCATTTGCTTATTATGATAGAAGAGTTTGGACAATACTTCTACATGTATAATTATGACTATAACTTATCCTAATATATCT</gDNA_template>
            <first_frame> A  S  G  I  C  L  C  P  W  G  F  Q  Y  F  S  Y  K  *  S  I  T  A  P  *  L  V  *  R  S  I  I  Y  L  L  S  L  *  I  S  P  K  K  L  L  P  L  T  C  L  H  S  T  K  Q  S  S  S  L  P  I  I  L  D  *  S  *  *  F  S  L  *  N  N  G  S  E  Y  Q  L  S  V  S  F  I  *  L  *  K  F  S  S  I  C  F  V  F  I  R  F  *  N  I  *  V  *  I  V  V  Y  A  G  R  L  N  C  R  F  I  L  P  L  L  Y  Q  H  Y  L  F  V  I  C  L  E  E  F  S  L  N  K  S  G  N  Y  S  Y  K  H  I  C  L  K  N  K  T  G  L  V  *  H  L  L  I  M  I  E  E  F  G  Q  Y  F  Y  M  Y  N  Y  D  Y  N  L  S  *  Y  I  </first_frame>
            <second_frame>  P  L  E  F  V  Y  V  L  G  V  F  N  I  S  P  T  N  N  P  S  L  L  P  S  L  Y  E  D  L  *  F  I  Y  Y  H  F  R  F  H  Q  K  N  C  F  R  *  R  A  Y  I  A  L  N  N  L  L  R  C  L  S  S  L  I  E  V  N  D  S  H  Y  K  T  M  V  V  N  I  N  Y  L  F  L  L  F  D  F  R  S  F  L  A  F  V  L  Y  S  S  D  F  E  I  F  R  Y  R  L  W  F  M  R  A  V  *  I  V  D  S  Y  Y  H  C  C  I  N  I  I  C  L  S  Y  A  L  K  S  L  A  *  I  S  L  E  I  T  L  I  S  I  Y  V  L  K  I  R  L  D  *  S  S  I  C  L  L  *  *  K  S  L  D  N  T  S  T  C  I  I  M  T  I  T  Y  P  N  I  S </second_frame>
            <third_frame>   L  W  N  L  F  M  S  L  G  F  S  I  F  L  L  Q  I  I  H  H  C  S  L  A  C  M  K  I  Y  N  L  S  I  I  T  L  D  F  T  K  K  T  A  S  V  N  V  P  T  *  H  *  T  I  F  F  V  A  Y  H  P  *  L  K  L  M  I  L  T  I  K  Q  W  *  *  I  S  I  I  C  F  F  Y  L  T  L  E  V  F  *  H  L  F  C  I  H  Q  I  L  K  Y  L  G  I  D  C  G  L  C  G  P  S  K  L  *  I  H  I  T  T  V  V  S  T  L  F  V  C  H  M  P  *  R  V  *  L  K  *  V  W  K  L  L  L  *  A  Y  M  S  *  K  *  D  W  I  S  L  A  F  A  Y  Y  D  R  R  V  W  T  I  L  L  H  V  *  L  *  L  *  L  I  L  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123971" stop="124171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAYIALNNLLRCLSSLIEVNDSHYKTMVVNINYLFLLFDFRSFLAFVLYSSDFEIFRYRLWFMRAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="124706" PGL_stop="125265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124706" e_stop="125265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="124706" e_stop="125265" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124706" stop="125088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124706" stop="125007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124706" stop="124978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124707" stop="125265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTATGATCAATGCTTATATGAAAGTTTGGAGAATGGTTGGCCCCTTGAATTTGTTTATATCCATGGGGTTTTCAATATTTCCCCTACAAATTATACTCTATAACCTGGATCCAGCTCTATAATTGACTTATTGCCTCTTTTGATTAACTATTTACGCCCACAGAATTCCTTTAATGTGCTATGTAAGTGTACTTGGAGTTGACACTTAACTGTCTTCATTCTTTTTCTTGTGTGTAAGTTTAAGTATATACCTGTTAATGTTCATATAAAAGAGTGAACATCTAATTACTGGTGTGTTTGGTGTCATGGTAAATGTTTCTTTGAAAATAAGTGGGGTTCTTATATGTTTTCTAATGTTTGAGTGTGGTGAAGCAGTGTGAAGATGGTGAGGGGATGTTGGCTAGTTCCATTGAATTCTCTTTTTGTGGTGCAAACCCCATATTATGTACTCCGTTATTTTTGAAAAAGGGAGGGTTGGATTAGATGTGATGTGAATGGTAGGGAGTAGTCGATCGGTGTGGAATCCCAGGATGATATTTGTTTCCTACTTCCAGTTT</gDNA_template>
            <first_frame> G  L  *  S  M  L  I  *  K  F  G  E  W  L  A  P  *  I  C  L  Y  P  W  G  F  Q  Y  F  P  Y  K  L  Y  S  I  T  W  I  Q  L  Y  N  *  L  I  A  S  F  D  *  L  F  T  P  T  E  F  L  *  C  A  M  *  V  Y  L  E  L  T  L  N  C  L  H  S  F  S  C  V  *  V  *  V  Y  T  C  *  C  S  Y  K  R  V  N  I  *  L  L  V  C  L  V  S  W  *  M  F  L  *  K  *  V  G  F  L  Y  V  F  *  C  L  S  V  V  K  Q  C  E  D  G  E  G  M  L  A  S  S  I  E  F  S  F  C  G  A  N  P  I  L  C  T  P  L  F  L  K  K  G  G  L  D  *  M  *  C  E  W  *  G  V  V  D  R  C  G  I  P  G  *  Y  L  F  P  T  S  S   </first_frame>
            <second_frame>  V  Y  D  Q  C  L  Y  E  S  L  E  N  G  W  P  L  E  F  V  Y  I  H  G  V  F  N  I  S  P  T  N  Y  T  L  *  P  G  S  S  S  I  I  D  L  L  P  L  L  I  N  Y  L  R  P  Q  N  S  F  N  V  L  C  K  C  T  W  S  *  H  L  T  V  F  I  L  F  L  V  C  K  F  K  Y  I  P  V  N  V  H  I  K  E  *  T  S  N  Y  W  C  V  W  C  H  G  K  C  F  F  E  N  K  W  G  S  Y  M  F  S  N  V  *  V  W  *  S  S  V  K  M  V  R  G  C  W  L  V  P  L  N  S  L  F  V  V  Q  T  P  Y  Y  V  L  R  Y  F  *  K  R  E  G  W  I  R  C  D  V  N  G  R  E  *  S  I  G  V  E  S  Q  D  D  I  C  F  L  L  P  V  </second_frame>
            <third_frame>   F  M  I  N  A  Y  M  K  V  W  R  M  V  G  P  L  N  L  F  I  S  M  G  F  S  I  F  P  L  Q  I  I  L  Y  N  L  D  P  A  L  *  L  T  Y  C  L  F  *  L  T  I  Y  A  H  R  I  P  L  M  C  Y  V  S  V  L  G  V  D  T  *  L  S  S  F  F  F  L  C  V  S  L  S  I  Y  L  L  M  F  I  *  K  S  E  H  L  I  T  G  V  F  G  V  M  V  N  V  S  L  K  I  S  G  V  L  I  C  F  L  M  F  E  C  G  E  A  V  *  R  W  *  G  D  V  G  *  F  H  *  I  L  F  L  W  C  K  P  H  I  M  Y  S  V  I  F  E  K  G  R  V  G  L  D  V  M  *  M  V  G  S  S  R  S  V  W  N  P  R  M  I  F  V  S  Y  F  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0159C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="127119" PGL_stop="132053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127119" e_stop="127288"/>
            <exon e_start="127612" e_stop="127748"/>
            <exon e_start="128983" e_stop="128997"/>
            <exon e_start="130336" e_stop="130495"/>
            <exon e_start="130643" e_stop="130704"/>
            <exon e_start="132021" e_stop="132053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.918"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.746" e_score="0.933"/>
          <exon-intron don_prob="0.984" acc_prob="0.990" e_score="0.950"/>
          <exon-intron don_prob="0.998" acc_prob="0.958" e_score="0.694"/>
          <exon-only e_score="0.879"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="127119" e_stop="127288" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127289" i_stop="127611" i_length="323"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="127612" e_stop="127748" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127749" i_stop="128982" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="128983" e_stop="128997" e_length="15"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.746">
            <gDNA_intron_boundary i_start="128998" i_stop="130335" i_length="1338"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="130336" e_stop="130495" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.990">
            <gDNA_intron_boundary i_start="130496" i_stop="130642" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.694">
            <gDNA_exon_boundary e_start="130643" e_stop="130704" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.958">
            <gDNA_intron_boundary i_start="130705" i_stop="132020" i_length="1316"/>
          </intron>
          <exon e_serial="6" e_score="0.879">
            <gDNA_exon_boundary e_start="132021" e_stop="132053" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127119" stop="127288"/>
              <exon start="127612" stop="127748"/>
              <exon start="128983" stop="128997"/>
              <exon start="130336" stop="130495"/>
              <exon start="130643" stop="130704"/>
              <exon start="132021" stop="132053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATATATTTCTTGATTCGAATTTTATACAATTTTTTTTTTTGCTCTTCGATTCACGCATCTCTTTCTCTTTTTTTTTTCTTTCTTTCTTTCCAATTGGCGCTGTTATCAAAATTTTGAATTTCAGCTGGGAAGAATGATGTGACTGTTCTTGTGGAATTCCCTTATG : AAATTCCAGTTGCATATTATGCATTTGCAATGGAGGCAAGTGAACCCAAATTTGAGGATAGCGCTGTTCCGGTAACAAGCACAATAAGGGCTTTGGAGAAGGAGATTGCTCATCCTATTGTTTACCAGCTTGTCCGG : GTTGATGGCGATGGA : AGATTAGTCCCAGCAACTCAAGATGAAATTATGGTAGTTGAGGACTTGCTTGAAGATGATAAGTGTGAATCCAAGCTTGTCCCAGATACCAGACAGATTTCAGAATCCTGCGTAACTGAAGGATACCCTCTTGAGAGAAATTCATTTCAAGTTACAGAAG : AAAAGTCAAATGTGTTGGTTGACTCAGTGCCTGACTTGGGAAAAATAGATGCTCCTAATAAG : GTGGCTGTTCATGGATTGGCTCCTCTCTCAGAA</gDNA_template>
            <first_frame> *  Y  I  F  L  D  S  N  F  I  Q  F  F  F  L  L  F  D  S  R  I  S  F  S  F  F  F  L  S  F  F  P  I  G  A  V  I  K  I  L  N  F  S  W  E  E  *  C  D  C  S  C  G  I  P  L  * :   N  S  S  C  I  L  C  I  C  N  G  G  K  *  T  Q  I  *  G  *  R  C  S  G  N  K  H  N  K  G  F  G  E  G  D  C  S  S  Y  C  L  P  A  C  P   : G  *  W  R  W   : K  I  S  P  S  N  S  R  *  N  Y  G  S  *  G  L  A  *  R  *  *  V  *  I  Q  A  C  P  R  Y  Q  T  D  F  R  I  L  R  N  *  R  I  P  S  *  E  K  F  I  S  S  Y  R  R :   K  V  K  C  V  G  *  L  S  A  *  L  G  K  N  R  C  S  *  *   : G  G  C  S  W  I  G  S  S  L  R  </first_frame>
            <second_frame>  N  I  Y  F  L  I  R  I  L  Y  N  F  F  F  C  S  S  I  H  A  S  L  S  L  F  F  F  F  L  S  F  Q  L  A  L  L  S  K  F  *  I  S  A  G  K  N  D  V  T  V  L  V  E  F  P  Y   : E  I  P  V  A  Y  Y  A  F  A  M  E  A  S  E  P  K  F  E  D  S  A  V  P  V  T  S  T  I  R  A  L  E  K  E  I  A  H  P  I  V  Y  Q  L  V  R  :  V  D  G  D  G  :  R  L  V  P  A  T  Q  D  E  I  M  V  V  E  D  L  L  E  D  D  K  C  E  S  K  L  V  P  D  T  R  Q  I  S  E  S  C  V  T  E  G  Y  P  L  E  R  N  S  F  Q  V  T  E   : E  K  S  N  V  L  V  D  S  V  P  D  L  G  K  I  D  A  P  N  K  :  V  A  V  H  G  L  A  P  L  S  E </second_frame>
            <third_frame>   I  Y  I  S  *  F  E  F  Y  T  I  F  F  F  A  L  R  F  T  H  L  F  L  F  F  F  S  F  F  L  S  N  W  R  C  Y  Q  N  F  E  F  Q  L  G  R  M  M  *  L  F  L  W  N  S  L  M  :  K  F  Q  L  H  I  M  H  L  Q  W  R  Q  V  N  P  N  L  R  I  A  L  F  R  *  Q  A  Q  *  G  L  W  R  R  R  L  L  I  L  L  F  T  S  L  S  G :   L  M  A  M  E :   D  *  S  Q  Q  L  K  M  K  L  W  *  L  R  T  C  L  K  M  I  S  V  N  P  S  L  S  Q  I  P  D  R  F  Q  N  P  A  *  L  K  D  T  L  L  R  E  I  H  F  K  L  Q  K  :  K  S  Q  M  C  W  L  T  Q  C  L  T  W  E  K  *  M  L  L  I  R :   W  L  F  M  D  W  L  L  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127240" stop="127288"/>
                    <exon start="127612" stop="127748"/>
                    <exon start="128983" stop="128997"/>
                    <exon start="130336" stop="130495"/>
                    <exon start="130643" stop="130704"/>
                    <exon start="132021" stop="132053"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISAGKNDVTVLVEFPYEIPVAYYAFAMEASEPKFEDSAVPVTSTIRALEKEIAHPIVYQLVRVDGDGRLVPATQDEIMVVEDLLEDDKCESKLVPDTRQISESCVTEGYPLERNSFQVTEEKSNVLVDSVPDLGKIDAPNKVAVHGLAPLSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="132573" PGL_stop="135311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132573" e_stop="132842"/>
            <exon e_start="133317" e_stop="133454"/>
            <exon e_start="133652" e_stop="133936"/>
            <exon e_start="134057" e_stop="134418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132573" e_stop="132842" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="132843" i_stop="133316" i_length="474"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133317" e_stop="133454" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="133455" i_stop="133651" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133652" e_stop="133936" e_length="285"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.999">
            <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="134057" e_stop="134418" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132573" stop="132842"/>
              <exon start="133317" stop="133454"/>
              <exon start="133652" stop="133760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132691" stop="132842"/>
              <exon start="133317" stop="133454"/>
              <exon start="133652" stop="133802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132763" stop="132842"/>
              <exon start="133317" stop="133454"/>
              <exon start="133652" stop="133936"/>
              <exon start="134057" stop="134247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132763" stop="132842"/>
              <exon start="133317" stop="133454"/>
              <exon start="133652" stop="133822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133416" stop="133454"/>
              <exon start="133652" stop="133936"/>
              <exon start="134057" stop="134418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAGCTCGCAAACCAACAAAAAGATATATTGAAGAGCTTTCAGAAATAGAATCTAGGGAAACCAGTGAAAAGTTAGCATCACCAGAAAAAATCCCCAGATACCAATTTGCATGTCCAGAAACTCATATAAGGCCCACCAAAAATGTGAGGTCATATGCGAGACCTCTGGTCACCAGGCAAGATTCTCTGGGAGGTTCTGGGGTGCAAATTCCATTTGTTTCTCGGATTCGAAGGAGCCGTCCGCGTGAGAACTTCATGCCTCTTTTG : AAACTTCAGCCGAGTGGTATGGACATGGCTACCAGACAAGTAAGGAGTGCTTTTGACATATCTGGGCCACAAGAAGATGATAAGAGAAATAATGACCTGATCAAGACCAGCTCATCTACTGGATGGACTGAACAGCCT : CGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAG : GACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGGGTTAGCATTATTTGAATTTTTATTATGCATGTTGTTTCATTGTTGTTGATGATTTTGTCAAGGACTTGTTTCAACTATAAGACGGCTTCATACATTTACTCTGTTTCAGTCGAAATGGTGATTCACCTTGTATGAGATTATAAAGAAGGTAAGGTATTCTAGAGGACGTTGATGTAGTTAGTACTCAACTTATCAACAGGAATTAGTTATAGGAATTTACTCTATTAGACGGAGACTGCATTTTTAAACAACTAGTTTTTGTCTCATATTTAAAAGTTCTAAAGTTCTAATTTTGTATAGGCACA</gDNA_template>
            <first_frame> K  R  A  R  K  P  T  K  R  Y  I  E  E  L  S  E  I  E  S  R  E  T  S  E  K  L  A  S  P  E  K  I  P  R  Y  Q  F  A  C  P  E  T  H  I  R  P  T  K  N  V  R  S  Y  A  R  P  L  V  T  R  Q  D  S  L  G  G  S  G  V  Q  I  P  F  V  S  R  I  R  R  S  R  P  R  E  N  F  M  P  L  L  :  K  L  Q  P  S  G  M  D  M  A  T  R  Q  V  R  S  A  F  D  I  S  G  P  Q  E  D  D  K  R  N  N  D  L  I  K  T  S  S  S  T  G  W  T  E  Q  P  :  R  I  A  A  C  E  K  D  E  H  S  S  G  M  K  I  V  E  L  E  N  D  V  E  V  N  D  C  S  E  D  N  S  D  D  N  V  V  T  V  P  T  Q  K  G  G  M  R  R  K  H  H  R  P  W  T  I  N  E  V  V  K  L  V  E  G  V  A  R  Y  G  A  G  K  W  S  E  I  K  R  L  A  F  S  A  C  P  Y  R  T  S  V  D  L  K  :  D  K  W  R  N  L  L  K  A  S  F  V  Q  L  P  A  E  K  G  V  S  I  I  *  I  F  I  M  H  V  V  S  L  L  L  M  I  L  S  R  T  C  F  N  Y  K  T  A  S  Y  I  Y  S  V  S  V  E  M  V  I  H  L  V  *  D  Y  K  E  G  K  V  F  *  R  T  L  M  *  L  V  L  N  L  S  T  G  I  S  Y  R  N  L  L  Y  *  T  E  T  A  F  L  N  N  *  F  L  S  H  I  *  K  F  *  S  S  N  F  V  *  A   </first_frame>
            <second_frame>  K  E  L  A  N  Q  Q  K  D  I  L  K  S  F  Q  K  *  N  L  G  K  P  V  K  S  *  H  H  Q  K  K  S  P  D  T  N  L  H  V  Q  K  L  I  *  G  P  P  K  M  *  G  H  M  R  D  L  W  S  P  G  K  I  L  W  E  V  L  G  C  K  F  H  L  F  L  G  F  E  G  A  V  R  V  R  T  S  C  L  F  * :   N  F  S  R  V  V  W  T  W  L  P  D  K  *  G  V  L  L  T  Y  L  G  H  K  K  M  I  R  E  I  M  T  *  S  R  P  A  H  L  L  D  G  L  N  S  L :   V  S  L  L  V  K  R  M  S  I  P  V  G  *  K  L  L  S  *  R  M  M  *  R  *  M  T  A  L  K  T  I  Q  M  I  M  W  *  L  Y  P  P  K  K  E  E  *  G  E  N  I  I  D  L  G  L  S  M  R  L  L  S  *  W  K  V  *  P  G  M  V  L  V  N  G  L  R  *  N  G  L  L  F  Q  L  A  L  I  E  L  R  W  T  *  R :   T  S  G  E  I  C  *  K  L  V  L  C  S  C  L  Q  K  K  G  L  A  L  F  E  F  L  L  C  M  L  F  H  C  C  *  *  F  C  Q  G  L  V  S  T  I  R  R  L  H  T  F  T  L  F  Q  S  K  W  *  F  T  L  Y  E  I  I  K  K  V  R  Y  S  R  G  R  *  C  S  *  Y  S  T  Y  Q  Q  E  L  V  I  G  I  Y  S  I  R  R  R  L  H  F  *  T  T  S  F  C  L  I  F  K  S  S  K  V  L  I  L  Y  R  H  </second_frame>
            <third_frame>   K  S  S  Q  T  N  K  K  I  Y  *  R  A  F  R  N  R  I  *  G  N  Q  *  K  V  S  I  T  R  K  N  P  Q  I  P  I  C  M  S  R  N  S  Y  K  A  H  Q  K  C  E  V  I  C  E  T  S  G  H  Q  A  R  F  S  G  R  F  W  G  A  N  S  I  C  F  S  D  S  K  E  P  S  A  *  E  L  H  A  S  F   : E  T  S  A  E  W  Y  G  H  G  Y  Q  T  S  K  E  C  F  *  H  I  W  A  T  R  R  *  *  E  K  *  *  P  D  Q  D  Q  L  I  Y  W  M  D  *  T  A   : S  Y  R  C  L  *  K  G  *  A  F  Q  W  D  E  N  C  *  A  R  E  *  C  R  G  E  *  L  L  *  R  Q  F  R  *  *  C  G  D  C  T  H  P  K  R  R  N  E  E  K  T  S  S  T  L  D  Y  Q  *  G  C  *  A  S  G  R  C  S  Q  V  W  C  W  *  M  V  *  D  K  T  A  C  F  F  S  L  P  L  S  N  F  G  G  P  E   : G  Q  V  E  K  S  A  K  S  *  F  C  A  V  A  C  R  K  R  G  *  H  Y  L  N  F  Y  Y  A  C  C  F  I  V  V  D  D  F  V  K  D  L  F  Q  L  *  D  G  F  I  H  L  L  C  F  S  R  N  G  D  S  P  C  M  R  L  *  R  R  *  G  I  L  E  D  V  D  V  V  S  T  Q  L  I  N  R  N  *  L  *  E  F  T  L  L  D  G  D  C  I  F  K  Q  L  V  F  V  S  Y  L  K  V  L  K  F  *  F  C  I  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132573" stop="132842"/>
                    <exon start="133317" stop="133454"/>
                    <exon start="133652" stop="133936"/>
                    <exon start="134057" stop="134128"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRARKPTKRYIEELSEIESRETSEKLASPEKIPRYQFACPETHIRPTKNVRSYARPLVTRQDSLGGSGVQIPFVSRIRRSRPRENFMPLLKLQPSGMDMATRQVRSAFDISGPQEDDKRNNDLIKTSSSTGWTEQPRIAACEKDEHSSGMKIVELENDVEVNDCSEDNSDDNVVTVPTQKGGMRRKHHRPWTINEVVKLVEGVARYGAGKWSEIKRLAFSACPYRTSVDLKDKWRNLLKASFVQLPAEKGVSII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133562" e_stop="133936"/>
            <exon e_start="134057" e_stop="134113"/>
            <exon e_start="135021" e_stop="135311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.888" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="133562" e_stop="133936" e_length="375"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.999">
            <gDNA_intron_boundary i_start="133937" i_stop="134056" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134057" e_stop="134113" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.854">
            <gDNA_intron_boundary i_start="134114" i_stop="135020" i_length="907"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="135021" e_stop="135311" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133562" stop="133936"/>
              <exon start="134057" stop="134113"/>
              <exon start="135021" stop="135311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133911" stop="133936"/>
              <exon start="134057" stop="134113"/>
              <exon start="135021" stop="135306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577270" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTACTTTTTTTTTGGTTGGTGGCTCTCTATTTTCCTTTCTCCCTCTCAAATTGATGATGATATTTTGTGGAACTCCTTTTGTTTCTAGCGTATCGCTGCTTGTGAAAAGGATGAGCATTCCAGTGGGATGAAAATTGTTGAGCTAGAGAATGATGTAGAGGTGAATGACTGCTCTGAAGACAATTCAGATGATAATGTGGTGACTGTACCCACCCAAAAAGGAGGAATGAGGAGAAAACATCATCGACCTTGGACTATCAATGAGGTTGTTAAGCTAGTGGAAGGTGTAGCCAGGTATGGTGCTGGTAAATGGTCTGAGATAAAACGGCTTGCTTTTTCAGCTTGCCCTTATCGAACTTCGGTGGACCTGAAG : GACAAGTGGAGAAATCTGCTAAAAGCTAGTTTTGTGCAGTTGCCTGCAGAAAAAGGG : ATTCTGAATTCCCGGAAACAGGCTTCAGTTCCGATCCCTGCGCCAATTCTCTCACGTGTGAGAGAGCTTGCTGATATGCAAGGTCAGATCCCACCAGTTCTTAGTGTATGCAAGTCAAGTGGACATAGTAGTAGCGATAGAAGTGTACATGAAGCTAGGTCTGGATTCCTGTAATTTCAACTTCATAGAAAGGTTTGTTTTTTTGGAATAAGTCCGATGGTGATTGGCAAACAGTTCACTAAGCATTATATTTCATGTGCTAATGCTACTTTTTGTTTGATTCAACCTTTT</gDNA_template>
            <first_frame> C  Y  F  F  F  G  W  W  L  S  I  F  L  S  P  S  Q  I  D  D  D  I  L  W  N  S  F  C  F  *  R  I  A  A  C  E  K  D  E  H  S  S  G  M  K  I  V  E  L  E  N  D  V  E  V  N  D  C  S  E  D  N  S  D  D  N  V  V  T  V  P  T  Q  K  G  G  M  R  R  K  H  H  R  P  W  T  I  N  E  V  V  K  L  V  E  G  V  A  R  Y  G  A  G  K  W  S  E  I  K  R  L  A  F  S  A  C  P  Y  R  T  S  V  D  L  K  :  D  K  W  R  N  L  L  K  A  S  F  V  Q  L  P  A  E  K  G  :  I  L  N  S  R  K  Q  A  S  V  P  I  P  A  P  I  L  S  R  V  R  E  L  A  D  M  Q  G  Q  I  P  P  V  L  S  V  C  K  S  S  G  H  S  S  S  D  R  S  V  H  E  A  R  S  G  F  L  *  F  Q  L  H  R  K  V  C  F  F  G  I  S  P  M  V  I  G  K  Q  F  T  K  H  Y  I  S  C  A  N  A  T  F  C  L  I  Q  P  F </first_frame>
            <second_frame>  A  T  F  F  L  V  G  G  S  L  F  S  F  L  P  L  K  L  M  M  I  F  C  G  T  P  F  V  S  S  V  S  L  L  V  K  R  M  S  I  P  V  G  *  K  L  L  S  *  R  M  M  *  R  *  M  T  A  L  K  T  I  Q  M  I  M  W  *  L  Y  P  P  K  K  E  E  *  G  E  N  I  I  D  L  G  L  S  M  R  L  L  S  *  W  K  V  *  P  G  M  V  L  V  N  G  L  R  *  N  G  L  L  F  Q  L  A  L  I  E  L  R  W  T  *  R :   T  S  G  E  I  C  *  K  L  V  L  C  S  C  L  Q  K  K  G :   F  *  I  P  G  N  R  L  Q  F  R  S  L  R  Q  F  S  H  V  *  E  S  L  L  I  C  K  V  R  S  H  Q  F  L  V  Y  A  S  Q  V  D  I  V  V  A  I  E  V  Y  M  K  L  G  L  D  S  C  N  F  N  F  I  E  R  F  V  F  L  E  *  V  R  W  *  L  A  N  S  S  L  S  I  I  F  H  V  L  M  L  L  F  V  *  F  N  L   </second_frame>
            <third_frame>   L  L  F  F  W  L  V  A  L  Y  F  P  F  S  L  S  N  *  *  *  Y  F  V  E  L  L  L  F  L  A  Y  R  C  L  *  K  G  *  A  F  Q  W  D  E  N  C  *  A  R  E  *  C  R  G  E  *  L  L  *  R  Q  F  R  *  *  C  G  D  C  T  H  P  K  R  R  N  E  E  K  T  S  S  T  L  D  Y  Q  *  G  C  *  A  S  G  R  C  S  Q  V  W  C  W  *  M  V  *  D  K  T  A  C  F  F  S  L  P  L  S  N  F  G  G  P  E   : G  Q  V  E  K  S  A  K  S  *  F  C  A  V  A  C  R  K  R   : D  S  E  F  P  E  T  G  F  S  S  D  P  C  A  N  S  L  T  C  E  R  A  C  *  Y  A  R  S  D  P  T  S  S  *  C  M  Q  V  K  W  T  *  *  *  R  *  K  C  T  *  S  *  V  W  I  P  V  I  S  T  S  *  K  G  L  F  F  W  N  K  S  D  G  D  W  Q  T  V  H  *  A  L  Y  F  M  C  *  C  Y  F  L  F  D  S  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133652" stop="133936"/>
                    <exon start="134057" stop="134113"/>
                    <exon start="135021" stop="135194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIAACEKDEHSSGMKIVELENDVEVNDCSEDNSDDNVVTVPTQKGGMRRKHHRPWTINEVVKLVEGVARYGAGKWSEIKRLAFSACPYRTSVDLKDKWRNLLKASFVQLPAEKGILNSRKQASVPIPAPILSRVRELADMQGQIPPVLSVCKSSGHSSSDRSVHEARSGFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="136876" PGL_stop="139367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136876" e_stop="137001"/>
            <exon e_start="137842" e_stop="137926"/>
            <exon e_start="139000" e_stop="139067"/>
            <exon e_start="139291" e_stop="139367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.999" e_score="0.897"/>
          <exon-intron don_prob="0.863" acc_prob="0.995" e_score="0.953"/>
          <exon-intron don_prob="0.983" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="136876" e_stop="137001" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137002" i_stop="137841" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="137842" e_stop="137926" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.995">
            <gDNA_intron_boundary i_start="137927" i_stop="138999" i_length="1073"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="139000" e_stop="139067" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.978">
            <gDNA_intron_boundary i_start="139068" i_stop="139290" i_length="223"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="139291" e_stop="139367" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136876" stop="137001"/>
              <exon start="137842" stop="137926"/>
              <exon start="139000" stop="139067"/>
              <exon start="139291" stop="139367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCCTCCTCGTCGGCGAACGGCTGCTCTTCTTCTGCTATCTTTTGCTTCCAACTTACTCAATCGGCGGAGAAGCAGAATCCAGTGGCCGGCCGCCGGAATCTCAATTGAGCTGCGTAGTTAGAA : ATAAACTAGAGAACCATGGGGATCGTAGAGAGGATCAAAGAAATTGAAGCCGAGATGGCTCGTACCCAGAAAAATAAAGCAACTG : AATATCATTTGGGTCAGCTGAAGGCTAAGATAGCAAAGCTGAGGACACAATTGTTAGAGCCCCCCAAA : GGTTCTAGTGGTGCTGGAGAAGGTTTCGAAGTTACAAAATTTGGCCATGGACGTGTTGCACTGATAGGATTTCCAAG</gDNA_template>
            <first_frame> P  S  S  S  S  A  N  G  C  S  S  S  A  I  F  C  F  Q  L  T  Q  S  A  E  K  Q  N  P  V  A  G  R  R  N  L  N  *  A  A  *  L  E  :  I  N  *  R  T  M  G  I  V  E  R  I  K  E  I  E  A  E  M  A  R  T  Q  K  N  K  A  T   : E  Y  H  L  G  Q  L  K  A  K  I  A  K  L  R  T  Q  L  L  E  P  P  K  :  G  S  S  G  A  G  E  G  F  E  V  T  K  F  G  H  G  R  V  A  L  I  G  F  P   </first_frame>
            <second_frame>  P  P  P  R  R  R  T  A  A  L  L  L  L  S  F  A  S  N  L  L  N  R  R  R  S  R  I  Q  W  P  A  A  G  I  S  I  E  L  R  S  *  K :   *  T  R  E  P  W  G  S  *  R  G  S  K  K  L  K  P  R  W  L  V  P  R  K  I  K  Q  L  :  N  I  I  W  V  S  *  R  L  R  *  Q  S  *  G  H  N  C  *  S  P  P  K :   V  L  V  V  L  E  K  V  S  K  L  Q  N  L  A  M  D  V  L  H  *  *  D  F  Q  </second_frame>
            <third_frame>   L  L  L  V  G  E  R  L  L  F  F  C  Y  L  L  L  P  T  Y  S  I  G  G  E  A  E  S  S  G  R  P  P  E  S  Q  L  S  C  V  V  R   : N  K  L  E  N  H  G  D  R  R  E  D  Q  R  N  *  S  R  D  G  S  Y  P  E  K  *  S  N  * :   I  S  F  G  S  A  E  G  *  D  S  K  A  E  D  T  I  V  R  A  P  Q   : R  F  *  W  C  W  R  R  F  R  S  Y  K  I  W  P  W  T  C  C  T  D  R  I  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137851" stop="137926"/>
                    <exon start="139000" stop="139067"/>
                    <exon start="139291" stop="139365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMGIVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 253 chains have been computed
$ 
$ memory statistics:
$ 434120 bytes spliced alignments in total
$ 131 spliced alignments have been stored
$ 3313 bytes was the average size of a spliced alignment
$ 32600 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 295 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:19:55
-->
