<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:20:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1442" ref_strand="+" ref_description="T1442">
      <seq>ttgaacatgcaaagacgagaaaggctaaaatatatgctgagtttttgggtggaagcttcacttctgatgcttatcacatgatagaaccacatccagaaggaagtggagttgttctctgcatagaaaaggccttggctcaatctggggtgaaacgtgaagatgtcaactatataaatgctcatgctgcatcaacgccagccggtgacctgaacgaatatcaggccattctgcattgttttgggaagaaccctgaacttaaaataaattcaacaaagtccatgactggtcatctccttggggctgctggtgctgtggaagccattgcaacagtcaaggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggatatgaatgtgctggtgggctctaagaaggagcgcttggatatcaaggttgcactctccaactcatttggctttggaggacacaactcgtctattctatttgcgccttataagaatgtctaattcaatccttgcacatatcatgtttaaagaatgtaatgttgcgttgattttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60071" stop="62733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60248" g_stop="60261" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60262" i_stop="60374" i_length="113">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60375" g_stop="60459" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="99" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60460" i_stop="60591" i_length="132">
            <donor d_prob="0.805" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60592" g_stop="60746" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="254" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60853" g_stop="60933" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="335" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62052" g_stop="62111" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62255" g_stop="62433" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="574" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="T1442" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="T1442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60248" e_stop="60261"/>
          <exon e_start="60375" e_stop="60459"/>
          <exon e_start="60592" e_stop="60746"/>
          <exon e_start="60853" e_stop="60933"/>
          <exon e_start="62052" e_stop="62111"/>
          <exon e_start="62255" e_stop="62433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACATGCAAAGGTATGCTTCCACTTAACCAATATGCATCTGATAATGTGGAGTTACTTTGATCATTCAGAAGGTTTTGTCAATTTGATTGTAGCTGTGTTGTGTTTTTTTCTGATTAACTACAGACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAGGTAATTTCATACATGGAAATTACCATCGTATTGCTGGTATTCCAGCTCAGATTTTATATCGTGTACATAGCCATTCTAAAGCATGGAAGACTTGTATTCCTACTGATTTCTTTTATATGCTTTACAAAATAGGAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAAGTAATGCTCTTGTACGCCTTTATTTTTGTTTTAGAAGATGTCCTCATATAGCTTGTTCTCAGCAACTGCTCTCTAATTCTCTTATAATGAGTTCTTTCTCATTCAGCTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAGGTAATAAAGTTTAAGATCGTTGCATACAAATACCCTATACAAGCTTAATATGGACTTTTATATTCAGAGAGGGATGAAAGGTTTAGATAGAAAATTACAAATTATGTTTTCTACAAGTAGCTGGTGCTGTGGAAGCCATTACAACAGTTAAGAGGTAATGAATATTAAGATAGTTGCATACAAATACCTTGTAAAAGCTTAAGATGAACTTTTAAACCCATAGAGGGATGAAAAGATTTACATAGAAATTTACATAAGTACCAGGTATGTTGTTTCTTTTAATAAGTGAAAGCATCAGGTATGTTTTATGATTGGAAATAAAATTTCAGAAAATATTTATGAATTACCGCAACTAGTTTAGAATCGAGGCATTGTTGTTGTATATTTATAGAGTCGTCAATACTTAGTAAAAGGACAGCTGGCTGTTGTAATGTAACTTCTTCGAATGATGGCTTGCTGCTGGTTTGCTTCATAACATCTTTATTGGGCCTTAATAGGCAACTTTTAGCTGTTGAAGTACGCATTAAGTCATTAGTAATCTATATGTTTTTGAGACAGCACAAGCTAGGTGTACAGATGGAAAGAGAACAACTAGTGTTTTTTTGTCTCGAATTTAAACCTGATATCACATGGTTCTTAACCCACTTCATTGACTGCTAGGCCACACTATGATCTTTTGTGTTTTGCCCATCAGAATAAAAACCTTCTTAGGTAAATAGATTGGTACTGGATGCCCGCAGGGGAAAAAAGCTTTTTAGATTGTCATGCCAAGTATTGAAGCAATCTGCTAGTTCGTTTTAACACGTGGAGAATGAAGTAGTTTCTACTTCTATTGACTTGTAGTTGGTTGACATAAGTTACTGTTTCTGAAGAAGTCTGTATCTGCAGTAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCA</genome_strand>
        <mrna_strand>TTGAACATGCAAAG.................................................................................................................ACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAACCACATCCAGAAG....................................................................................................................................GAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCCATTCTGCATTGTTTTGGGAAGAACCCTGAA..........................................................................................................CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATTGCAACAGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG...............................................................................................................................................GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGCGTTGATTTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG549-F" ref_strand="+" ref_description="TG549-F">
      <seq>taattgtgtcttgaaatgtacttttagttgaggtaatatagcattcatttccaatggagagaagctggaacacaatcgctttctactagtctatttgtgcttagagtaattacaactatctcagaccaaaaaaataaaaattaaaaattacaactatctctgcaccctagctttcagtttttatatgaaagtttgctaatacttgtttatttggaattttatatatataggccatacatacaggatggatccatccaaacatcaatcttgagaaccctgacaatggcttggtatgtatctggttaattaatgccctcagctttttgaacaagcttgcactccctatctaatattgatgcgattaagaagccattgcatcttaatcagctttaattagttaactatgttctaatgttgctaaacatgatattaggatatgaatgtgctggtgggctctaagaaggagcgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="+" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="61522" stop="62594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61822" g_stop="62294" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="+" ref_id="TG549-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="+"/>
        <rDNA rDNA_id="TG549-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61822" e_stop="62294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGG</genome_strand>
        <mrna_strand>TAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG549-R" ref_strand="+" ref_description="TG549-R">
      <seq>tcaggagaagacttttctccattactatgcacttttggcgcagcggttatgcatgatcaacaaagttcaccagaagaattttgagaaattattcatgcaacaatactcgatgatccaccaacttgaaactaataaactgcgtaatgtggcaaagttttttgctcaattactaggcactgatgcactgccttggcatgttttggcttatttaagattgacagaagaggatactacatcttcttctcgtatattcatcaaaattttattccaggagttgtcagggcaccttggcatccataagctgaatgagcgtcttagtgacccctctatgcaagagtcgtttgagtcgatatttccaaaggataatcctaaaaatgtgaggtttgctatcaactttttcacatccattggtctaggtgggataactgaaaatctgcgagactatctgaagaacatgccaaggctcatcttgcagcaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63896" stop="62816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63596" g_stop="63116" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="TG549-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="TG549-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63596" e_stop="63116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAGAAGACTTTTCTCCATTACTATGCACTTTTGGCGCAGCGGTTATGCATGATCAACAAAGTTCACCAGAAGAATTTTGAGAAATTATTCATGCAACAATACTCGATGATCCACCAACTTGAAACTAATAAACTGCGTAATGTGGCAAAGTTTTTTGCTCAATTACTAGGCACTGATGCACTGCCTTGGCATGTTTTGGCTTATTTAAGATTGACAGAAGAGGATACTACATCTTCTTCTCGTATATTCATCAAAATTTTATTCCAGGAGTTGTCAGGGCACCTTGGCATCCATAAGCTGAATGAGCGTCTTAGTGACCCCTCTATGCAAGAGTCGTTTGAGTCGATATTTCCAAAGGATAATCCTAAAAATGTGAGGTTTGCTATCAACTTTTTCACATCCATTGGTCTAGGTGGGATAACTGAAAATCTGCGAGACTATCTGAAGAACATGCCAAGGCTCATCTTGCAGCAAGAG</genome_strand>
        <mrna_strand>TCAGGAGAAGACTTTTCTCCATTACTATGCACTTTTGGCGCAGCGGTTATGCATGATCAACAAAGTTCACCAGAAGAATTTTGAGAAATTATTCATGCAACAATACTCGATGATCCACCAACTTGAAACTAATAAACTGCGTAATGTGGCAAAGTTTTTTGCTCAATTACTAGGCACTGATGCACTGCCTTGGCATGTTTTGGCTTATTTAAGATTGACAGAAGAGGATACTACATCTTCTTCTCGTATATTCATCAAAATTTTATTCCAGGAGTTGTCAGGGCACCTTGGCATCCATAAGCTGAATGAGCGTCTTAGTGACCCCTCTATGCAAGAGTCGTTTGAGTCGATATTTCCAAAGGATAATCCTAAAAATGTGAGGTTTGCTATCAACTTTTTCACATCCATTGGTCTAGGTGGGATAACTGAAAATCTGCGAGACTATCTGAAGAACATGCCAAGGCTCATCTTGCAGCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0162" ref_strand="+" ref_description="T0162">
      <seq>cagggaagaccttaagaatgagtttgagcgcgccaatgggagtcaaattgaaactgctgctagaccatatgcttttattaaatttgatacattcatacagaagacgaagaaactgtaccaggatactagaactcaacgcaacatttctaagttgaatgatgagctttacgaagttcatcaaataatgactcgaaatgttcaagaagttcttggagttggtgaaaagttggaccaggtcagtcaaatgtccagccgtttgacatctgaatcccggatatatgctgataaagcaaaagacttaaatcgtcaggctttgattcgaaaatgggctcctgttgctattgtgcttggagttgtcattctcttcttctggctcagaacaaagatctggtgatgcttccatacagatgcagctcagtgacgacaatactgtcaaatgttttattcatatttgtcaccatcagactctgcacaacccagagaaccacctcacattacagttatccagcatgtgttgtgccatatcagttttatagtgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76263" stop="73632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75966" g_stop="75881" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75775" g_stop="75629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="233" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74533" g_stop="74457" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="310" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74163" g_stop="73932" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="542" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="T0162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="T0162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75966" e_stop="75881"/>
          <exon e_start="75775" e_stop="75629"/>
          <exon e_start="74533" e_stop="74457"/>
          <exon e_start="74163" e_stop="73932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTGGTAATCTATTGGAGTATTTTCTTTTATGTTCTTTGCTGTCCAATTATATTTTGGTGAAACTGATATTTTGATGCTTGCAATATGTGATTTACCCTGTTGTAAAAGATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACCGTAAGTTTCTCATTCTAACATTCCTCTTTTGTGAACAATACCTCGTTCATTCTGGATTTCTTTGATTTGATTATCTCGAAAGATATTGTGCTAATGTGCTATTAACTTAACTTTTCAGTTTATTATATCGGCAATGTCAACTAATTGATATTAAAATTGAGCTTGTGGTATTACAGTTACATTAGTTCTGAACTTCTGGTGTTTATAAGGATCTTTCTAGTTTGGTTAGAGACTTGTATGTCCATGTACGGCAAGTGTGAGATTTGGACAATCTATGGTAAGGTTTTCTTTACTTTCCCATAGCAGCCTCGCTAAATTTTAAATTATGGTTGTCTCCAAGAGTTTCCTATCAGAACTTCAGGTGTCCATTGGTAGTGTATCACAAGTCTAAATGTCTGTAATTTTCAAGTTTATATGTCTTGATGTAGTAGGTCGGGAGACAAAAACAGAGGAGAGTGGATGCTGTGGAAGATTGTTGAGAAGTAAAATGGTTTAAAAGACCACACTTCGACGTCCTTAAAATTTGATAATGTAATATAACACGGTTAAGTGTTTATTCCTTTATGTCTCATTAACTCCCAGAATGATTTCTTCTATCAGAAACTTCCAAGGTATAATTGTGTAGGCTGCATCTTATATGCTAATATTGAAGGCAGAAAATAACATTTTTGGGTTTATTATTAAGGTAATTTAAATGGAGTATTGTGGTTGTGAACTTGTGAGATGAGATTTTTATTTGGAATCATTAAAGTCCATGTTAAAAGATAGTGGGTTCTCTATATTGTTGAGAAAAAATTATGATTCTCTTGGTATAAAAGTAGTGGACACCAAATCCATCTCTATGCAAATAACATTGGGAGTTGTGTCAGTTCCGACAATATTTGCCACTTCCTAAATCCAAAAGGCACATGACATTAGTCAGCTGTAGGATTTGCAGCTTTGACATTGATTGGACACTCTTATGATGATGTATAATTTTTATATAGTTGGTTCGCTCCTATTTTCACCCTTCCCATGTTCATTGCCCTATTTGTTATTCCATTTATGATCATCTTAGGTGGTTATTGACTAGATTGTCGAATGTCAATTTTGCAGAGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAGGTTAGTTTCATTGACTTCACAAGATGATTCACCTCATAATTTTGTTTGGAAGTTGTACAGTTTAAATTAATAGTAATACTAAAGCTGTACAAGAAACTGAAGGAACATACTCAGTGTGATTTCTTTTAGTTCTGCTAAAATGCAGCCATCATGTTGGTACCTTATTAGGCTCCGACACAAGCAAAGACAAGCAGCTTATGTTACTGATGGTTTTGTCTCATTTGTTTTATCTTTAAGCATGTGATCTGGATATTTGATATTGCTTTAATTACTGATTCATTACTTGACTTTAGGCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAA</genome_strand>
        <mrna_strand>CAGGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG.........................................................................................................ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG.....................................................................................................................................................................................................................................................................................................GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR11" ref_strand="+" ref_description="SSR11">
      <seq>gcctaaactgaaaattcaaagtttccgatgactctgttgagctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaggatgagtcaattgcaaatgcaacagcagcaacaacaatttggtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119302" stop="118119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119003" g_stop="118419" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SSR11" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SSR11" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119003" e_stop="118419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATG</genome_strand>
        <mrna_strand>GCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGAGCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR604" ref_strand="+" ref_description="SSR604">
      <seq>gcctaaactgaaaattcaaagtttccgatgactctgttgagctgaattccgttcagtcgacgaatcatcttcatcgtcacaacacgaaccaataaacaaatggctgaaattccgtcgtcttccccaaaattaactcaaccatcgaaccctataatggataccacaaaccaagtaaccgccggcggagctgcaccgtcgacgacgtcgtctaatcccggaattacgatgacttctccttctaacaacaattcaatcgcacaatcgccttcaattgacctccctcaaatcccgttagcccaatctcagcaacagcagcatcagcatcaaattcagatgccgcaacctcaacaaatgcagcagcagcagcaacagcaattgacacaatctcaacaacagcagcagcagcagcagcaaatgcagctccagcagcaacagagtaattcgagcaatcttaacggcagtaacagcaacttgatgtccgcctctaatttccagatgcagcaaaacttgcagagatcgccctcaatggcggcgaggatgagtcaattgcaaatgcaacagcagcaacaacaatttggtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0159C06-i7iyl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C03HBa0159C06.1" temp_strand="-" temp_description="C03HBa0159C06.1  AC238455.1 htgs_phase:2 submitted_to_sgn_as:gi|260064223|gb|AC238455.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0159c06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119302" stop="118119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119003" g_stop="118419" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0159C06.1" gen_strand="-" ref_id="SSR604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0159C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SSR604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119003" e_stop="118419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATG</genome_strand>
        <mrna_strand>GCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGAGCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="60248" PGL_stop="62433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60248" e_stop="60261"/>
            <exon e_start="60375" e_stop="60459"/>
            <exon e_start="60592" e_stop="60746"/>
            <exon e_start="60853" e_stop="60933"/>
            <exon e_start="62052" e_stop="62111"/>
            <exon e_start="62255" e_stop="62433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.914" e_score="0.988"/>
          <exon-intron don_prob="0.803" acc_prob="0.892" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60248" e_stop="60261" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60262" i_stop="60374" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="60375" e_stop="60459" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.805" acc_prob="0.914">
            <gDNA_intron_boundary i_start="60460" i_stop="60591" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="60592" e_stop="60746" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.892">
            <gDNA_intron_boundary i_start="60747" i_stop="60852" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="60853" e_stop="60933" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60934" i_stop="62051" i_length="1118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62052" e_stop="62111" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62112" i_stop="62254" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="62255" e_stop="62433" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60248" stop="60261"/>
              <exon start="60375" stop="60459"/>
              <exon start="60592" stop="60746"/>
              <exon start="60853" stop="60933"/>
              <exon start="62052" stop="62111"/>
              <exon start="62255" stop="62433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACATGCAAAG : ACGAGAAAGGCTAAAATATATGCTGAGTTTTTGGGTGGAAGCTTCACTTCTGATGCTTATCACATGATAGAGCCACATCCAGAAG : GAAGTGGAGTTGTTCTCTGCATAGAAAAGGCCTTGGCTCAATCTGGGGTGAAACGTGAAGATGTCAACTATATAAATGCTCATGCTGCATCAACGCCAGCCGGTGACCTGAACGAATATCAGGCTATTCTGCATTGCTTTGGGAAGAACCCTGAA : CTTAAAATAAATTCAACAAAGTCCATGACTGGTCATCTCCTTGGGGCTGCTGGTGCTGTGGAAGCCATCGCAACAGTCAAG : GCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTG : GATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGGATATCAAGGTTGCACTCTCCAACTCATTTGGCTTTGGAGGACACAACTCGTCTATTCTATTTGCGCCTTATAAGAATGTCTAATTCAATCCTTGCACATATCATGTTTAAAGAATGTAATGTTGTGTTGATTTTCATCA</gDNA_template>
            <first_frame> L  N  M  Q  R :   R  E  R  L  K  Y  M  L  S  F  W  V  E  A  S  L  L  M  L  I  T  *  *  S  H  I  Q  K  :  E  V  E  L  F  S  A  *  K  R  P  W  L  N  L  G  *  N  V  K  M  S  T  I  *  M  L  M  L  H  Q  R  Q  P  V  T  *  T  N  I  R  L  F  C  I  A  L  G  R  T  L  N :   L  K  *  I  Q  Q  S  P  *  L  V  I  S  L  G  L  L  V  L  W  K  P  S  Q  Q  S  R :   P  Y  I  Q  D  G  S  I  Q  T  S  I  L  R  T  L  T  M  A  W :   I  *  M  C  W  W  A  L  R  R  S  A  W  I  S  R  L  H  S  P  T  H  L  A  L  E  D  T  T  R  L  F  Y  L  R  L  I  R  M  S  N  S  I  L  A  H  I  M  F  K  E  C  N  V  V  L  I  F  I  </first_frame>
            <second_frame>  *  T  C  K   : D  E  K  G  *  N  I  C  *  V  F  G  W  K  L  H  F  *  C  L  S  H  D  R  A  T  S  R  R :   K  W  S  C  S  L  H  R  K  G  L  G  S  I  W  G  E  T  *  R  C  Q  L  Y  K  C  S  C  C  I  N  A  S  R  *  P  E  R  I  S  G  Y  S  A  L  L  W  E  E  P  *   : T  *  N  K  F  N  K  V  H  D  W  S  S  P  W  G  C  W  C  C  G  S  H  R  N  S  Q   : G  H  T  Y  R  M  D  P  S  K  H  Q  S  *  E  P  *  Q  W  L   : G  Y  E  C  A  G  G  L  *  E  G  A  L  G  Y  Q  G  C  T  L  Q  L  I  W  L  W  R  T  Q  L  V  Y  S  I  C  A  L  *  E  C  L  I  Q  S  L  H  I  S  C  L  K  N  V  M  L  C  *  F  S  S </second_frame>
            <third_frame>   E  H  A  K  :  T  R  K  A  K  I  Y  A  E  F  L  G  G  S  F  T  S  D  A  Y  H  M  I  E  P  H  P  E   : G  S  G  V  V  L  C  I  E  K  A  L  A  Q  S  G  V  K  R  E  D  V  N  Y  I  N  A  H  A  A  S  T  P  A  G  D  L  N  E  Y  Q  A  I  L  H  C  F  G  K  N  P  E  :  L  K  I  N  S  T  K  S  M  T  G  H  L  L  G  A  A  G  A  V  E  A  I  A  T  V  K  :  A  I  H  T  G  W  I  H  P  N  I  N  L  E  N  P  D  N  G  L  :  D  M  N  V  L  V  G  S  K  K  E  R  L  D  I  K  V  A  L  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  N  V  *  F  N  P  C  T  Y  H  V  *  R  M  *  C  C  V  D  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60250" stop="60261"/>
                    <exon start="60375" stop="60459"/>
                    <exon start="60592" stop="60746"/>
                    <exon start="60853" stop="60933"/>
                    <exon start="62052" stop="62111"/>
                    <exon start="62255" stop="62377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHAKTRKAKIYAEFLGGSFTSDAYHMIEPHPEGSGVVLCIEKALAQSGVKREDVNYINAHAASTPAGDLNEYQAILHCFGKNPELKINSTKSMTGHLLGAAGAVEAIATVKAIHTGWIHPNINLENPDNGLDMNVLVGSKKERLDIKVALSNSFGFGGHNSSILFAPYKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61822" e_stop="62294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61822" e_stop="62294" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61822" stop="62294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG549-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGTGGGCTCTAAGAAGGAGCGCTTGG</gDNA_template>
            <first_frame> *  L  C  L  E  M  Y  F  *  L  R  *  Y  S  I  H  F  Q  W  R  E  A  G  T  Q  S  L  S  T  S  L  F  V  L  R  V  I  T  T  I  S  D  Q  K  N  K  N  *  K  L  Q  L  S  L  H  P  S  F  Q  F  L  Y  E  S  L  L  I  L  V  Y  L  E  F  Y  I  Y  R  P  Y  I  Q  D  G  S  I  Q  T  S  I  L  R  T  L  T  M  A  W  Y  V  S  G  *  L  M  P  S  A  F  *  T  S  L  H  S  L  S  N  I  D  A  I  K  K  P  L  H  L  N  Q  L  *  L  V  N  Y  V  L  M  L  L  N  M  I  L  G  Y  E  C  A  G  G  L  *  E  G  A  L   </first_frame>
            <second_frame>  N  C  V  L  K  C  T  F  S  *  G  N  I  A  F  I  S  N  G  E  K  L  E  H  N  R  F  L  L  V  Y  L  C  L  E  *  L  Q  L  S  Q  T  K  K  I  K  I  K  N  Y  N  Y  L  C  T  L  A  F  S  F  Y  M  K  V  C  *  Y  L  F  I  W  N  F  I  Y  I  G  H  T  Y  R  M  D  P  S  K  H  Q  S  *  E  P  *  Q  W  L  G  M  Y  L  V  N  *  C  P  Q  L  F  E  Q  A  C  T  P  Y  L  I  L  M  R  L  R  S  H  C  I  L  I  S  F  N  *  L  T  M  F  *  C  C  *  T  *  Y  *  D  M  N  V  L  V  G  S  K  K  E  R  L  </second_frame>
            <third_frame>   I  V  S  *  N  V  L  L  V  E  V  I  *  H  S  F  P  M  E  R  S  W  N  T  I  A  F  Y  *  S  I  C  A  *  S  N  Y  N  Y  L  R  P  K  K  *  K  L  K  I  T  T  I  S  A  P  *  L  S  V  F  I  *  K  F  A  N  T  C  L  F  G  I  L  Y  I  *  A  I  H  T  G  W  I  H  P  N  I  N  L  E  N  P  D  N  G  L  V  C  I  W  L  I  N  A  L  S  F  L  N  K  L  A  L  P  I  *  Y  *  C  D  *  E  A  I  A  S  *  S  A  L  I  S  *  L  C  S  N  V  A  K  H  D  I  R  I  *  M  C  W  W  A  L  R  R  S  A  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0159C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="63596" PGL_stop="63116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63596" e_stop="63116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63596" e_stop="63116" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63596" stop="63116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG549-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGAGAAGACTTTTCTCCATTACTATGCACTTTTGGCGCAGCGGTTATGCATGATCAACAAAGTTCACCAGAAGAATTTTGAGAAATTATTCATGCAACAATACTCGATGATCCACCAACTTGAAACTAATAAACTGCGTAATGTGGCAAAGTTTTTTGCTCAATTACTAGGCACTGATGCACTGCCTTGGCATGTTTTGGCTTATTTAAGATTGACAGAAGAGGATACTACATCTTCTTCTCGTATATTCATCAAAATTTTATTCCAGGAGTTGTCAGGGCACCTTGGCATCCATAAGCTGAATGAGCGTCTTAGTGACCCCTCTATGCAAGAGTCGTTTGAGTCGATATTTCCAAAGGATAATCCTAAAAATGTGAGGTTTGCTATCAACTTTTTCACATCCATTGGTCTAGGTGGGATAACTGAAAATCTGCGAGACTATCTGAAGAACATGCCAAGGCTCATCTTGCAGCAAGAG</gDNA_template>
            <first_frame> S  G  E  D  F  S  P  L  L  C  T  F  G  A  A  V  M  H  D  Q  Q  S  S  P  E  E  F  *  E  I  I  H  A  T  I  L  D  D  P  P  T  *  N  *  *  T  A  *  C  G  K  V  F  C  S  I  T  R  H  *  C  T  A  L  A  C  F  G  L  F  K  I  D  R  R  G  Y  Y  I  F  F  S  Y  I  H  Q  N  F  I  P  G  V  V  R  A  P  W  H  P  *  A  E  *  A  S  *  *  P  L  Y  A  R  V  V  *  V  D  I  S  K  G  *  S  *  K  C  E  V  C  Y  Q  L  F  H  I  H  W  S  R  W  D  N  *  K  S  A  R  L  S  E  E  H  A  K  A  H  L  A  A  R  </first_frame>
            <second_frame>  Q  E  K  T  F  L  H  Y  Y  A  L  L  A  Q  R  L  C  M  I  N  K  V  H  Q  K  N  F  E  K  L  F  M  Q  Q  Y  S  M  I  H  Q  L  E  T  N  K  L  R  N  V  A  K  F  F  A  Q  L  L  G  T  D  A  L  P  W  H  V  L  A  Y  L  R  L  T  E  E  D  T  T  S  S  S  R  I  F  I  K  I  L  F  Q  E  L  S  G  H  L  G  I  H  K  L  N  E  R  L  S  D  P  S  M  Q  E  S  F  E  S  I  F  P  K  D  N  P  K  N  V  R  F  A  I  N  F  F  T  S  I  G  L  G  G  I  T  E  N  L  R  D  Y  L  K  N  M  P  R  L  I  L  Q  Q  E </second_frame>
            <third_frame>   R  R  R  L  F  S  I  T  M  H  F  W  R  S  G  Y  A  *  S  T  K  F  T  R  R  I  L  R  N  Y  S  C  N  N  T  R  *  S  T  N  L  K  L  I  N  C  V  M  W  Q  S  F  L  L  N  Y  *  A  L  M  H  C  L  G  M  F  W  L  I  *  D  *  Q  K  R  I  L  H  L  L  L  V  Y  S  S  K  F  Y  S  R  S  C  Q  G  T  L  A  S  I  S  *  M  S  V  L  V  T  P  L  C  K  S  R  L  S  R  Y  F  Q  R  I  I  L  K  M  *  G  L  L  S  T  F  S  H  P  L  V  *  V  G  *  L  K  I  C  E  T  I  *  R  T  C  Q  G  S  S  C  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63595" stop="63116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEKTFLHYYALLAQRLCMINKVHQKNFEKLFMQQYSMIHQLETNKLRNVAKFFAQLLGTDALPWHVLAYLRLTEEDTTSSSRIFIKILFQELSGHLGIHKLNERLSDPSMQESFESIFPKDNPKNVRFAINFFTSIGLGGITENLRDYLKNMPRLILQQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="75966" PGL_stop="73932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75966" e_stop="75881"/>
            <exon e_start="75775" e_stop="75629"/>
            <exon e_start="74533" e_stop="74457"/>
            <exon e_start="74163" e_stop="73932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.972" e_score="0.977"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="75966" e_stop="75881" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75880" i_stop="75776" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75775" e_stop="75629" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="75628" i_stop="74534" i_length="1095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74533" e_stop="74457" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74456" i_stop="74164" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74163" e_stop="73932" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75966" stop="75881"/>
              <exon start="75775" stop="75629"/>
              <exon start="74533" stop="74457"/>
              <exon start="74163" stop="73932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGGAAGACCTTAAGAATGAGTTTGAGCGCGCCAATGGGAGTCAAATTGAAACTGCTGCTAGACCATATGCTTTTATTAAATTTG : ATACATTCATACAGAAGACGAAGAAACTGTACCAGGATACTAGAACTCAACGCAACATTTCTAAGTTGAATGATGAGCTTTACGAAGTTCATCAAATAATGACTCGAAATGTTCAAGAAGTTCTTGGAGTTGGTGAAAAGTTGGACC : AGGTCAGTCAAATGTCCAGCCGTTTGACATCTGAATCCCGGATATATGCTGATAAAGCAAAAGACTTAAATCGTCAG : GCTTTGATTCGAAAATGGGCTCCTGTTGCTATTGTGCTTGGAGTTGTCATTCTCTTCTTCTGGCTCAGAACAAAGATCTGGTGATGCTTCCATACAGATGCAGCTCAGTGACGACAATACTGTCAAATGTTTTATTCATATTTGTCACCATCAGACTCTGCACAACCCAGAGAACCACCTCACATTACAGTTATCCAGCATGTGTTGTGCCATATCAGTTTTATAGTGTAAA</gDNA_template>
            <first_frame> P  G  R  P  *  E  *  V  *  A  R  Q  W  E  S  N  *  N  C  C  *  T  I  C  F  Y  *  I  * :   Y  I  H  T  E  D  E  E  T  V  P  G  Y  *  N  S  T  Q  H  F  *  V  E  *  *  A  L  R  S  S  S  N  N  D  S  K  C  S  R  S  S  W  S  W  *  K  V  G  P :   G  Q  S  N  V  Q  P  F  D  I  *  I  P  D  I  C  *  *  S  K  R  L  K  S  S   : G  F  D  S  K  M  G  S  C  C  Y  C  A  W  S  C  H  S  L  L  L  A  Q  N  K  D  L  V  M  L  P  Y  R  C  S  S  V  T  T  I  L  S  N  V  L  F  I  F  V  T  I  R  L  C  T  T  Q  R  T  T  S  H  Y  S  Y  P  A  C  V  V  P  Y  Q  F  Y  S  V   </first_frame>
            <second_frame>  L  E  D  L  K  N  E  F  E  R  A  N  G  S  Q  I  E  T  A  A  R  P  Y  A  F  I  K  F   : D  T  F  I  Q  K  T  K  K  L  Y  Q  D  T  R  T  Q  R  N  I  S  K  L  N  D  E  L  Y  E  V  H  Q  I  M  T  R  N  V  Q  E  V  L  G  V  G  E  K  L  D   : Q  V  S  Q  M  S  S  R  L  T  S  E  S  R  I  Y  A  D  K  A  K  D  L  N  R  Q  :  A  L  I  R  K  W  A  P  V  A  I  V  L  G  V  V  I  L  F  F  W  L  R  T  K  I  W  *  C  F  H  T  D  A  A  Q  *  R  Q  Y  C  Q  M  F  Y  S  Y  L  S  P  S  D  S  A  Q  P  R  E  P  P  H  I  T  V  I  Q  H  V  L  C  H  I  S  F  I  V  *  </second_frame>
            <third_frame>   W  K  T  L  R  M  S  L  S  A  P  M  G  V  K  L  K  L  L  L  D  H  M  L  L  L  N  L  :  I  H  S  Y  R  R  R  R  N  C  T  R  I  L  E  L  N  A  T  F  L  S  *  M  M  S  F  T  K  F  I  K  *  *  L  E  M  F  K  K  F  L  E  L  V  K  S  W  T  :  R  S  V  K  C  P  A  V  *  H  L  N  P  G  Y  M  L  I  K  Q  K  T  *  I  V  R :   L  *  F  E  N  G  L  L  L  L  L  C  L  E  L  S  F  S  S  S  G  S  E  Q  R  S  G  D  A  S  I  Q  M  Q  L  S  D  D  N  T  V  K  C  F  I  H  I  C  H  H  Q  T  L  H  N  P  E  N  H  L  T  L  Q  L  S  S  M  C  C  A  I  S  V  L  *  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75965" stop="75881"/>
                    <exon start="75775" stop="75629"/>
                    <exon start="74533" stop="74457"/>
                    <exon start="74163" stop="74080"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEDLKNEFERANGSQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVILFFWLRTKIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="119003" PGL_stop="118419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119003" e_stop="118419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="119003" e_stop="118419" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119003" stop="118419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR11" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119003" stop="118419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR604" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTAAACTGAAAATTCAAAGTTTCCGATGACTCTGTTGATCTGAATTCCGTTCAGTCGACGAATCATCTTCATCGTCACAACACGAACCAATAAACAAATGGCTGAAATTCCGTCGTCTTCCCCAAAATTAACTCAACCATCGAACCCTATAATGGATACCACAAACCAAGTAACCGCCGGCGGAGCTGCACCGTCGACGACGTCGTCTAATCCCGGAATTACGATGACTTCTCCTTCTAACAACAATTCAATCGCACAATCGCCTTCAATTGACCTCCCTCAAATCCCGTTAGCCCAATCTCAGCAACAGCAGCATCAGCATCAAATTCAGATGCCGCAACCTCAACAAATGCAGCAGCAGCAGCAACAGCAATTGACACAATCTCAACAACAGCAGCAGCAGCAGCAGCAAATGCAGCTCCAGCAGCAACAGAGTAATTCGAGCAATCTTAACGGCAGTAACAGCAACTTGATGTCCGCCTCTAATTTCCAGATGCAGCAAAACTTGCAGAGATCGCCCTCAATGGCGGCGAGGATGAGTCAATTGCAAATGCAACAGCAGCAACAACAATTTGGTTTGATG</gDNA_template>
            <first_frame> P  *  T  E  N  S  K  F  P  M  T  L  L  I  *  I  P  F  S  R  R  I  I  F  I  V  T  T  R  T  N  K  Q  M  A  E  I  P  S  S  S  P  K  L  T  Q  P  S  N  P  I  M  D  T  T  N  Q  V  T  A  G  G  A  A  P  S  T  T  S  S  N  P  G  I  T  M  T  S  P  S  N  N  N  S  I  A  Q  S  P  S  I  D  L  P  Q  I  P  L  A  Q  S  Q  Q  Q  Q  H  Q  H  Q  I  Q  M  P  Q  P  Q  Q  M  Q  Q  Q  Q  Q  Q  Q  L  T  Q  S  Q  Q  Q  Q  Q  Q  Q  Q  Q  M  Q  L  Q  Q  Q  Q  S  N  S  S  N  L  N  G  S  N  S  N  L  M  S  A  S  N  F  Q  M  Q  Q  N  L  Q  R  S  P  S  M  A  A  R  M  S  Q  L  Q  M  Q  Q  Q  Q  Q  Q  F  G  L  M </first_frame>
            <second_frame>  P  K  L  K  I  Q  S  F  R  *  L  C  *  S  E  F  R  S  V  D  E  S  S  S  S  S  Q  H  E  P  I  N  K  W  L  K  F  R  R  L  P  Q  N  *  L  N  H  R  T  L  *  W  I  P  Q  T  K  *  P  P  A  E  L  H  R  R  R  R  R  L  I  P  E  L  R  *  L  L  L  L  T  T  I  Q  S  H  N  R  L  Q  L  T  S  L  K  S  R  *  P  N  L  S  N  S  S  I  S  I  K  F  R  C  R  N  L  N  K  C  S  S  S  S  N  S  N  *  H  N  L  N  N  S  S  S  S  S  S  K  C  S  S  S  S  N  R  V  I  R  A  I  L  T  A  V  T  A  T  *  C  P  P  L  I  S  R  C  S  K  T  C  R  D  R  P  Q  W  R  R  G  *  V  N  C  K  C  N  S  S  N  N  N  L  V  *   </second_frame>
            <third_frame>   L  N  *  K  F  K  V  S  D  D  S  V  D  L  N  S  V  Q  S  T  N  H  L  H  R  H  N  T  N  Q  *  T  N  G  *  N  S  V  V  F  P  K  I  N  S  T  I  E  P  Y  N  G  Y  H  K  P  S  N  R  R  R  S  C  T  V  D  D  V  V  *  S  R  N  Y  D  D  F  S  F  *  Q  Q  F  N  R  T  I  A  F  N  *  P  P  S  N  P  V  S  P  I  S  A  T  A  A  S  A  S  N  S  D  A  A  T  S  T  N  A  A  A  A  A  T  A  I  D  T  I  S  T  T  A  A  A  A  A  A  N  A  A  P  A  A  T  E  *  F  E  Q  S  *  R  Q  *  Q  Q  L  D  V  R  L  *  F  P  D  A  A  K  L  A  E  I  A  L  N  G  G  E  D  E  S  I  A  N  A  T  A  A  T  T  I  W  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0159C06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118958" stop="118419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPFSRRIIFIVTTRTNKQMAEIPSSSPKLTQPSNPIMDTTNQVTAGGAAPSTTSSNPGITMTSPSNNNSIAQSPSIDLPQIPLAQSQQQQHQHQIQMPQPQQMQQQQQQQLTQSQQQQQQQQQMQLQQQQSNSSNLNGSNSNLMSASNFQMQQNLQRSPSMAARMSQLQMQQQQQQFGLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 12464 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2077 bytes was the average size of a spliced alignment
$ 9400 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2350 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:20:40
-->
