<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:50:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568524" ref_strand="+" ref_description="SGN-U568524 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157356531|emb|CAO62718.1| (e_value=4e-90) unnamed; (*ATH) AT3G15820.1 (e_value=8e-90) | Symbol: None | phosphatidic acid phosphatase-related / PAP2-related, contains Pfam profile PF01569: PAP2 superfamily | chr3:5351078-5353735 FORWARD | Aliases: MSJ11.22; ">
      <seq>atgtttttctccgtttccggcgacaatgaacggagacacatttcatagtcggaatagttcttcctctactctcagcaaaaggaataccactgaaaggaaagttgacgttacagaaatgaagaagaaatcggcatcggcaacgggaacggaggttggtggttatggatggtggttaggtaatgcgtatttcatgaagtggaggatggaggatgtattcggtgtagtgaagtaccatccaataccgtgtatcttcgctgcttcactgttgtttttcatgggagtggaatatacgcttcatatgattccagcttctgctccgcctttcgatctcggatttattgttacagttcctcttaatcgattgcttgctgctaaacccgctctcaacactctctttgctggcctaaacacggtgtttgtggcgatgcaaacggcgtacattttggggacttttctaattgaaggacggcctcgagcgacaatatcggcgctgtttatgttcacattcagagggattctcgggtatgctacacaattgccgttgccggaggatttcttggggtcaggggtggatttcccagtagggaatgtgtcgtttttcttgttttattcagggcatgttgcggcctcggtgattgcttcgctggatatgaaacgtatgcagagatgggaaatggctagagtatttgacgcattgaatgtattgcaagttgtgaggttactaagcactaggggccattacactattgatttggctgttggtattggcgctggcattttgtttgattctatggcaggaaactatgtggagactaggacaaaactatctgccactaatggtattggtgtggaatactctcctaagcatgaaaacggagtgaaataccaaagtgtatcttcagattaaaatgtatccactcaaatgtgtgatggtggattttaggtcgaaatgtaaagataagtttgggttggtccaattgtagggtctttatcttagtgcacttctgttccaatttaggtactttgtaaactgcaactgcagcttcccactcaccccaccaaactcaccatgcttttaattttaatgtaagcagctttctttagatcccttttttatcattctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10756" stop="7566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10456" g_stop="10045" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139">
            <donor d_prob="0.107" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9905" g_stop="9768" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="550" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8443" g_stop="7866" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="1127" r_length="577" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U568524" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1128</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10456" e_stop="10045"/>
          <exon e_start="9905" e_stop="9768"/>
          <exon e_start="8443" e_stop="7866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTTCTCCGTTTCCGGCGACAATGAACGGAGACACATTTCATAGTCGGAATAGTTCTTCCTCTACTCTCAGCAAAAGGAATACCACTGAAAGGAAAGTTGACGTTACAGAAATGAAGAAGAAATCGGCATCGGCAACGGGAACGGAGGTTGGTGGTTATGGATGGTGGTTAGGTAATGCGTATTTCATGAAGTGGAGGATGGAGGATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACGGTACGCTACGCTACTACGCACATCACCAAATCGGTGCATGTCGGTGTTCCCGATCTAGTTATGAACTGGATCTGCAGTTTTTATCGATAAATTTTAGCATTAATCAAATATTTTTTTTCACGATTTGAGTTTAATTTAGGTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAGGTATTTTACTTTCCCTTTTTTCTATTAATAATCCATCCTGTATACAAGCTCTTTCTTTACAGCTAGATGCCTTTTGCTTTTAAAACTTCTAAAAGAAAGTTATTGAATACCAAATTCATATAATACATGAATATATCCTTTTTAACTTAGTCTTATTTTATATTATGTTATTTAATTTTATTTTTTTTTATAAAATTAAATAAATATACACAAATTCTACTTGTCACAAATTTTCATATTGGACATTTGTATTTATTTGTTTTATTTTACACAAATTTAAATATAAATGTGTTATTTCCGCTTTATTCGCGTAGATCACAAGCTAACCATTCATTTGACTTAAATACTTGTATGGATGGGACTATCTTAAACTTTTGTGTAGCCTCGTGCTCATAGAAGGCTCCCCGTCATTTTACTTGGTACGTATTAACTTACATGAGAAATATTTACAAATAAGCTTTGAAAATTTAATTTAATCTGAGTAGTATTGGAAGAAAAATGAGTAATTAATTTGCTAAATGGACAAGTAAAATCGGCCTTTCAATCAATATTCTATATAATATAACAGAAATGTTAAAGTTGAATAAATGCTGTTTAATACTATAATTTTTTTTTCCATCAAGTCATAGTGGGGGCTGGGGGGCATATTTTAGCATAAATAGCTGTCTAACAAATAGCTTGGACTTGTCCCAGCTAACTAATTTAATGCGATAAATGTTATAATACTGCTTGTATGAATTTTTAACCAAACTAAGCCATTATATAAAACAATTTATCAAAATAATATATTTTTCTAAAATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATGTACGTTTTACTGTAAGTAACGTTTTACTCCTAAAACATTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTATGAGTAATGTTTTAGGAGTAAAATGTTACTGTGAGTAACGTATATCAATCTGACGCTATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACAGTGGAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTCAAAACCTCCTGCTTGTATTACATAAGCACCACCCACATTTGAAACTGACTAGTGACTAGTGTAGAGTGTCATTCTCTACCATTAAACCTCCATGTTCTGAATTATTTGAATGTATGATTCAATTTAATGGTATCAATACAAAATGTCGAAAAATGCAGTGATATATCGCTTTCTGAATTGTAGGATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAATGTAAGCAGCTTTCTTTAGATCCCTTTTTTATTCATTCTCCTA</genome_strand>
        <mrna_strand>ATGTTTTTCTCCGTTTCCGGCGACAATGAACGGAGACACATTTCATAGTCGGAATAGTTCTTCCTCTACTCTCAGCAAAAGGAATACCACTGAAAGGAAAGTTGACGTTACAGAAATGAAGAAGAAATCGGCATCGGCAACGGGAACGGAGGTTGGTGGTTATGGATGGTGGTTAGGTAATGCGTATTTCATGAAGTGGAGGATGGAGGATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACG...........................................................................................................................................GTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAATGTAAGCAGCTTTCTTTAGATCCCTTTTTTA-TCATTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587211" ref_strand="-" ref_description="SGN-U587211 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356531|emb|CAO62718.1| (e_value=1e-51) unnamed; (*ATH) AT3G15820.1 (e_value=2e-52) | Symbol: None | phosphatidic acid phosphatase-related / PAP2-related, contains Pfam profile PF01569: PAP2 superfamily | chr3:5351078-5353735 FORWARD | Aliases: MSJ11.22; ">
      <seq>ttnnattntcccgcnacccatggcgncccgcnggaatttagattagcgtggttcncggccggaggtacnttcatatgattccagtttntgctnccccctttnnatctcgganttaattgttncagttcctcttaatcgatngctgctnctaaacccnctctcaacactntctttgntggcctaaaccacggtgttngtgggcgatgcaaaacggcgtncattttgggggacttttctaatngaaggacggcctcgancgacaatatcggcgctgtttatgttcacatncagagggattctcgggtatgctacacaattgccgttgccggaggatttcttggggtcaggggtggatttcccagtagggaatgtgtcgtttttcttgttttattcagggcatgttgcggcctcggtgattgcttcgctggatatgaaacgtatgcagagatgggaaatggctagagtatttgacgcattgaatgtattgcaagttgtgaggttactaagcactaggggccattacactattgatttggctgttggtattggcgctggcattttgtttgattctatggcaggaaactatgtggagactaggacaaaactatctgccactaatggtattggtgtggaatactctcctaagcatgaaaacggagtgaaataccaaagtgtatcttcagattaaaatgtatccactcaaatgtgtgatggtggattttaggtcgaaatgtaaagataagtttgggttggtccaattgtagggtctttatcttagtgcacttctgttccaatttaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10463" stop="7675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10165" g_stop="10045" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="190" r_length="123" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139">
            <donor d_prob="0.107" d_score="0.86"/>
            <acceptor a_prob="0.955" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9905" g_stop="9768" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="331" r_length="141" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8443" g_stop="7974" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="801" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U587211" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10165" e_stop="10045"/>
          <exon e_start="9905" e_stop="9768"/>
          <exon e_start="8443" e_stop="7974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCATATGATTCCAGCTTCTGCT-CCGCCTTTCGATCTCGGATTT-ATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAA-CACGGTACGCTACGCTACTACGCACATCACCAAATCGGTGCATGTCGGTGTTCCCGATCTAGTTATGAACTGGATCTGCAGTTTTTATCGATAAATTTTAGCATTAATCAAATATTTTTTTTCACGATTTGAGTTTAATTTAGGTGTTTGT-GGCGATGC-AAACGGCGTACATTTT-GGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAGGTATTTTACTTTCCCTTTTTTCTATTAATAATCCATCCTGTATACAAGCTCTTTCTTTACAGCTAGATGCCTTTTGCTTTTAAAACTTCTAAAAGAAAGTTATTGAATACCAAATTCATATAATACATGAATATATCCTTTTTAACTTAGTCTTATTTTATATTATGTTATTTAATTTTATTTTTTTTTATAAAATTAAATAAATATACACAAATTCTACTTGTCACAAATTTTCATATTGGACATTTGTATTTATTTGTTTTATTTTACACAAATTTAAATATAAATGTGTTATTTCCGCTTTATTCGCGTAGATCACAAGCTAACCATTCATTTGACTTAAATACTTGTATGGATGGGACTATCTTAAACTTTTGTGTAGCCTCGTGCTCATAGAAGGCTCCCCGTCATTTTACTTGGTACGTATTAACTTACATGAGAAATATTTACAAATAAGCTTTGAAAATTTAATTTAATCTGAGTAGTATTGGAAGAAAAATGAGTAATTAATTTGCTAAATGGACAAGTAAAATCGGCCTTTCAATCAATATTCTATATAATATAACAGAAATGTTAAAGTTGAATAAATGCTGTTTAATACTATAATTTTTTTTTCCATCAAGTCATAGTGGGGGCTGGGGGGCATATTTTAGCATAAATAGCTGTCTAACAAATAGCTTGGACTTGTCCCAGCTAACTAATTTAATGCGATAAATGTTATAATACTGCTTGTATGAATTTTTAACCAAACTAAGCCATTATATAAAACAATTTATCAAAATAATATATTTTTCTAAAATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATGTACGTTTTACTGTAAGTAACGTTTTACTCCTAAAACATTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTATGAGTAATGTTTTAGGAGTAAAATGTTACTGTGAGTAACGTATATCAATCTGACGCTATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACAGTGGAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTCAAAACCTCCTGCTTGTATTACATAAGCACCACCCACATTTGAAACTGACTAGTGACTAGTGTAGAGTGTCATTCTCTACCATTAAACCTCCATGTTCTGAATTATTTGAATGTATGATTCAATTTAATGGTATCAATACAAAATGTCGAAAAATGCAGTGATATATCGCTTTCTGAATTGTAGGATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGT</genome_strand>
        <mrna_strand>CNTTCATATGATTCCAGTTTNTGCTNCCCCCTTTNNATCTCGGANTTAATTGTTNCAGTTCCTCTTAATCGATNGC-TGCTNCTAAACCCNCTCTCAACACTNTCTTTGNTGGCCTAAACCACG...........................................................................................................................................GTGTTNGTGGGCGATGCAAAACGGCGTNCATTTTGGGGGACTTTTCTAATNGAAGGACGGCCTCGANCGACAATATCGGCGCTGTTTATGTTCACATNCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574388" ref_strand="+" ref_description="SGN-U574388 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157356529|emb|CAO62716.1| (e_value=2e-145) unnamed; (*ATH) AT3G15880.1 (e_value=5e-138)  Symbol: None | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g15750.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g80490.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At... ; ">
      <seq>ggcaattctggctttggcatacaatgccgtacacaaactctggaagtggcaacggaacgagaggaacgtgacaggaaaggcatctactgctgtcccccctcaattatggcaaccttccagtggaattctgatgacaaatgatataagcgacacaaaccctgaagaagctgttccatgctttgcactttccaagaatgactcttatgttatgtccgcatctggtggaaaaatttctttgtttaacatgatgacttttaagaccatgacaactttcatgccccctccacctgcagcaacttttcttgcttttcatccacaggataataacattattgctatcggaatggaggactcttctatacaaatatataatgttcgcgttgatgaggtgaaaagcaaactcaaaggtcatcagaagagagtaactggcttggctttctctagcgttttgaatgttctggtatcatctggtgctgatgctcagctatgtgtttggagcatggatggatgggagaagaaagccagcaagtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaaggaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttgagaaattttgcctgttttaagttgtttctgtccaagcactaaactatggcagtgtaattatcgaaagctcaagcaagccagttgattttactctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16046" stop="12579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15747" g_stop="15669" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15537" g_stop="15358" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="259" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15254" g_stop="15126" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="388" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15024" g_stop="14929" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="484" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14149" g_stop="13961" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="673" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13694" g_stop="13534" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="834" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13402" g_stop="12879" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="1358" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U574388" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15747" e_stop="15669"/>
          <exon e_start="15537" e_stop="15358"/>
          <exon e_start="15254" e_stop="15126"/>
          <exon e_start="15024" e_stop="14929"/>
          <exon e_start="14149" e_stop="13961"/>
          <exon e_start="13694" e_stop="13534"/>
          <exon e_start="13402" e_stop="12879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAGGTACTGGGACTTTTTGTTTTGAGTTTTTTTCTCTTCCCAAAAATTCCGCAGTGAATTATCTTTCTTTTTCCCCTATAACCTTGATCTTTAATGTTTCTTTTCTGATAACCTGTTCCGATTTATCTCTCCAGGCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAGGTATTTATAACTCAAATGTGTATGGCTTAGTTCGATAGCTTGTGTATCAGTGTGATTGGTCGGTTTTAATCTGAGGCTTAACATACACTTAAATGCCTTGCAGACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAGGTCCTGAAATAAATTATGATTATATGTTAAGATTAGGATATCATAATTGATATATGATCTGTGCATAACATAATGATTTAGTTACTTTTTCAAATCTACAGGTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</genome_strand>
        <mrna_strand>GGCAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG...................................................................................................................................GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG.......................................................................................................ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG.....................................................................................................GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG...................................................................................................................................CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595702" ref_strand="+" ref_description="SGN-U595702 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147794674|emb|CAN64663.1| (e_value=8e-37) hypothetical; (*ATH) AT3G15880.1 (e_value=7e-35)  Symbol: None | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g15750.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g80490.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At... ; ">
      <seq>cgcttgtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaaggtatgcatctttgtattctaatttttttccaaaggtatgaatcatatcagggacaataggggactaaaactaggtgtagtttcatattctctcatgtctgtctcctagttgcctgacaatgtacttgacagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaagaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14409" stop="12676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14110" g_stop="13961" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="12976" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="868" r_length="718" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U595702" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14110" e_stop="13961"/>
          <exon e_start="13694" e_stop="12976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTG</genome_strand>
        <mrna_strand>CGCTTGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAA-GAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595701" ref_strand="+" ref_description="SGN-U595701 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356529|emb|CAO62716.1| (e_value=3e-41) unnamed; (*ATH) AT1G15750.2 (e_value=2e-42) | Symbol: None | WD-40 repeat family protein, contains 10 WD-40 repeats (PF00400) (1 weak) | chr1:5414360-5420859 REVERSE | Aliases: None; ">
      <seq>gctggagaaatccaaaatttggaactcgactgaaattagtgaacctgctcacgttcgctcctcgaggcttccagataatcaactgtccgggaggatcattagattaatgtgcacaaattcgggaggtgcaattctggctttggcatacaatgccgcacacacactctggaagcggctacggaacgagaggaacgtgtctggtaaggcatgtcctgctgtcccccctcaattatggcaaccttccaacggaattctgatgacaaatgatataagctacacacaccctgattaagctggttcatgctttgcactttccaagaatgactcttatgttatgtccgcatctggtggaataacttctttgtttaacatgatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16671" stop="15063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16371" g_stop="16278" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16277" i_stop="15780" i_length="498">
            <donor d_prob="0.718" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15779" g_stop="15669" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="205" r_length="111" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131">
            <donor d_prob="0.422" d_score="0.86"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15537" g_stop="15363" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="380" r_length="175" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U595701" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16371" e_stop="16278"/>
          <exon e_start="15779" e_stop="15669"/>
          <exon e_start="15537" e_stop="15363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGAAATCCAAAATTTGGAAATTGACTGAAATTAGTGAACCTGCTCAAGTTCGTTCCTCGAGGCTTCCAGATAATCAACTGTCCGTGAGGGTAAGGATGTGGTACCTATCTGGTAATATCTTCTGCTTGGGGGCCAAGGTGTCTATGAGTTCCCTATTAGCTAGCTGTTCCAGAACAAGTTTTGTCAAGTGCATTCATTAGCTAATTGTTCTAGAACAAGTTTTGTTAAATCTATTCATTCAAGTTTTTGTCTGGTTTGTTCATTTACAGGGAAGGAAAAGATAGGTAATTCATTGTGGTTTTTAAAATTAGGAGTTTATGTTTCAGATATCTTATGTACCTATCTGTTACTTATCTGTTTAATTTCTTCTGCTTGGGGACCAAGGTGTCTAGGAGTTCTCCATTAGCTAGTTGTTCCAGAATAAGTTTTGTCAAGTCTATCCATTTAAGTTTGTCTTGGTTTGTTCATTTACCGTAAGGAAAAGATAGGTAATTCATTGTGGTTTTTGAAATTAGGAGTTTATGTATCAGATATCTTATGTAACTTGAGTTATTGTTGATCAATTCTTTATATTTTGCTATATTCAGATCATTAGATTAATGTACACAAATTCGGGAGGTGCAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAGGTACTGGGACTTTTTGTTTTGAGTTTTTTTCTCTTCCCAAAAATTCCGCAGTGAATTATCTTTCTTTTTCCCCTATAACCTTGATCTTTAATGTTTCTTTTCTGATAACCTGTTCCGATTTATCTCTCCAGGCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTT</genome_strand>
        <mrna_strand>GCTGGAGAAATCCAAAATTTGGAACTCGACTGAAATTAGTGAACCTGCTCACGTTCGCTCCTCGAGGCTTCCAGATAATCAACTGTCCGGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTAGATTAATGTGCACAAATTCGGGAGGTGCAATTCTGGCTTTGGCATACAATGCCGCACACACACTCTGGAAGCGGCTACGGAACGAGAGGAACGTGTCTGGTAAG...................................................................................................................................GCATGTCCTGCTGTCCCCCCTCAATTATGGCAACCTTCCAACGGAATTCTGATGACAAATGATATAAGCTACACACACCCTGATTAAGCTGGTTCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAATAACTTCTTTGTTTAACATGATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580074" ref_strand="+" ref_description="SGN-U580074 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157342991|emb|CAO65703.1| (e_value=0) unnamed; (*ATH) AT3G15880.1 (e_value=0)  Symbol: None | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g15750.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At1g80490.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At... ; ">
      <seq>aagagaaagagagaaagcagaggggaaggaaaaagacggaggcccaccgcaaaagcccaaaaggacctcaccttcttcatcgtcttcgttgtttatgttcatctcgatcggttgtgaaaaccctaaattaaggtcggcgattgtaggattgtggtggatctgttttgatcagtcaacgtgatgacttctttaagcagagagctggtgtttttgatactccagttcttagatgaagagaagttcaaggaaactgtgcacaagttggagaaggagtcgggtttcttcttcaacatgaggtattttgaggattcggttactaatggagagtgggatgaggtggagaagtatttatctgggtttactaaggtagatgataatcggtactcaatgaaaatattttttgagatccgaaaacagaagtatctggaagcacttgataggcatgatcaggctaaggctgtggagattctagtgaaagatctgaaagtgttttccacatttaatgaagagttgttcaaggagataacgctcctcttgacattgcagaattttagggagaatgaacagctttcaaagtatggagataccaagtctgctagggcgataatgcttgttgagttaaaaaaattgatcgaggccaatcctcttttccgcgagaagcttcagtttcctagcttaaagaactcaaggctgcggacattgataaaccagagtttaaattggcagcatcagctatgcaagaacccaaagcccaatcctgatataaaaacactctttgttgaccatgcttgtgggcaaccaaatggtgctcgggctccttcgccagttgctaatccaataattggttctatgcctaaagtaggtggttttccacctataggcgcccatggaccattccagccagcacaagcacctattgcttcgcttggaggatggatgaccaatcctccctctatgccacaccaagctatttcaggaggaccaataggcttaagccctcctactaatgctgcatccatgctaaagcatcctaggactcctcctgctagcaatgctgcgttggactaccaaacagccgattcagagcatgtactgaagaggccaagaccctttgggatgtcagaggaggtcaataatctccccgtcaacattttccccgtcacatatcctggacagagccatgctcatagcttgcattcttctgatgacttgcccaagactgttgtggtgaacttgaatcaagggtctgctgttaagagcatggatttccatcctgtgcaacaaactcttcttcttgttggaacaaacattggtgacattgctatatgggagattggtggcagggaaaggcttgcatttaaaaattttaaagtttgggagataggtaactgttcaatgactttgcaggcttctttagcgaatgaatacactgcaacagttaaccgtgtgatgtggagtcctgatgggaaccttcttggtgttgcatattctaagcacatagttcatctatactcataccatgggtggtgatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23125" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22825" g_stop="22722" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22721" i_stop="22610" i_length="112">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22609" g_stop="22454" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="260" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22453" i_stop="22353" i_length="101">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22352" g_stop="22173" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="440" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22172" i_stop="22046" i_length="127">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22045" g_stop="21932" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="554" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21931" i_stop="20712" i_length="1220">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20711" g_stop="20553" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="713" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20552" i_stop="20432" i_length="121">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20431" g_stop="20254" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="891" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20253" i_stop="20127" i_length="127">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20126" g_stop="20006" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="1012" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20005" i_stop="19853" i_length="153">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19852" g_stop="19737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1013" r_stop="1128" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19736" i_stop="19494" i_length="243">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19493" g_stop="19325" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1297" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19324" i_stop="19225" i_length="100">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="19224" g_stop="19115" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1298" r_stop="1407" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="19114" i_stop="19028" i_length="87">
            <donor d_prob="0.474" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="19027" g_stop="18958" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1408" r_stop="1477" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="18957" i_stop="18486" i_length="472">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="18485" g_stop="18427" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1478" r_stop="1537" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U580074" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1536</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22825" e_stop="22722"/>
          <exon e_start="22609" e_stop="22454"/>
          <exon e_start="22352" e_stop="22173"/>
          <exon e_start="22045" e_stop="21932"/>
          <exon e_start="20711" e_stop="20553"/>
          <exon e_start="20431" e_stop="20254"/>
          <exon e_start="20126" e_stop="20006"/>
          <exon e_start="19852" e_stop="19737"/>
          <exon e_start="19493" e_stop="19325"/>
          <exon e_start="19224" e_stop="19115"/>
          <exon e_start="19027" e_stop="18958"/>
          <exon e_start="18485" e_stop="18427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGAGAGAAAGCAGAGGGGAAGGAAAAAGACGGAGGCCCACCGCAAAAGCCCAAAAGGACCTCACCTTCTTCATCGTCTTCGTTGTTTATGTTCATCTGTAAGTTTCCGATCTCCAGGTTTTTATTGTTGAATTTTCAGGTATAATTTTGATGTTTCTGTTGCTTTGATTGTTTAATTTCAGTGCATGTTTTTTTTTTTTTGATTTGAAGCGATCGGTTGTGAAAACCCTAAATTAAGGTCGGCGATTGTAGGATTGTGGTGGATCTGTTTTGATCAGTCAACGTGATGACTTCTTTAAGCAGAGAGCTGGTGTTTTTGATACTCCAGTTCTTAGATGAAGAGAAGTTCAAGGAAACTGTGCACAAGTAAAGGCTTTTTTTTTTTTAAAAAAAATGATTTTTGTATTCGTGATTTTATTGTTTTTTGTTTGATGTTTCTTTTTTTTTTTGTTTAATCGATGATGAAGGTTGGAGAAGGAGTCGGGTTTCTTCTTCAACATGAGGTATTTTGAGGATTCGGTTACTAATGGAGAGTGGGATGAGGTGGAGAAGTATTTATCTGGGTTTACTAAGGTAGATGATAATCGGTACTCAATGAAAATATTTTTTGAGATCCGAAAACAGAAGTATCTGGAAGCACTTGATAGGTACTACAAGCAGTTTCATTTCCGTGCTTCTTTTTGATTATTTTGGGACCTCATTTGCCATTTTGGTTTTTAGCCGTTTAGGTTGGTTTGATTTGGGTGATTTTATGTACTTCCTTTTTTGTTGCAGGCATGATCAGGCTAAGGCTGTGGAGATTCTAGTGAAAGATCTGAAAGTGTTTTCCACATTTAATGAAGAGTTGTTCAAGGAGATAACGCTCCTCTTGACATTGCAGAATTTTAGGTATAGAATTTGTATGTTGGTTAATTTAGAGGGTAGTTGTTGTTACATTGAATATGCTAGCATTCATGATTTTGTGTATTTTTTTCTTTGGTTGAAAAATTTAGTAGTATTTGAGAAAAATTGTGTCTTTAGCACGAATGCAGAGCTGCAGTTTGCCAGGTAGTCTGCTTTTGTGTAGGCAAGCAAGTTTCGTTGTTAAGTGGACATTCTCTGCACATCAGTAGTTTTTCACTTGCGGCAAAAAACTCTCAGAAGTTGATACCCTATATGAATGCGGATCTATAAGTCTATATGTCATCACCTGAATCTTAGGATTCTAGATATGCAAAAGATTGCAAGTATTGCTTTTCAAGATTTGCTATAAATGTATAGTACTACATAGATAAGTCTTATTCAATAATTAGTGAAGTTGTTGAACTAAGACTAGTATAACTACATTCTCCTTGAATACCTACTAAGATATCTCATACATTAGCAAAATATTATGTGATATTTATAGTCTCACATGTTTACCCTAAAATGGAAACCAAAAGGCCAACAAACCTATGGTTCTTGGTCTTTATCGTAGTCAAAGCATCCAAGATATGTTGACCAAGTCCAATGTTTTATCCCATACCCACACCAACATCATGTTGGATCGACATGGTGCTGCAAGGGAATTTGAAGGATCCGTGCAACATAAATTTAGAAGATCTGGCTATCATTTCCTTTATTTGGTCCCTCTTTTATTTGCGTTAAAGCCAAAGGGTTTTCCCTTTGCTTAATTGAATCTGAAAAGAGACTATTCATCAACTACTCACAAGGATTACACAAGGAGTTCATTTCTTGTTTTGCACGGGAGGTCTAATTTCGCCTACGTCCGACTTGAGATGAAATGTTGCTAGGTTTATTTCTATTAAGTGATTTTTCGCTTGGATGGATAGTCAAAATTACTTTGTTACTTGTGATATATATGCTGGCGTTCTTCGGAGCTTGCACTTTTGCTCGACAAAGTTGCATAAGGCAAAACATGATGCCTAATTAGGAAGAGAAAATATTCCTTCTTTCTCTTATTTGTAAGATTACCATATTAATATTCTAGTATCTCTCTGCCTTTAGTTTGTTTACTGCGGTGCAGGAAGTCTTTTGTTGGTGAGCAGTTGGTTTGTTCTTTTTCATTCCAGTCTATCTTGTTCATTTCATAAAAAAAAAAATTTATGGTGGAAAATATGTAATGCTAGGGAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAGGTGACCAAGGAACAGCTTTATTAATATTCTTATGTTTTTTTTCTTCAGGCTGAGTTTAAATCTTTTTTCTGTTTACACCATTGTATGTTCATTATTATTATTCCATTCTATTATCTCGCAGTTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGAGTATGTGTTCCTTGAAACAACTACCTCCTTTCTTAGTTTCTCCCTTTCTAAAAAGTAAATGTAAGCTCGCTGAGTATATTATTTGAATTTGTTGTTCAAATTACTCTTGTTTTTTTTGTCTGAAAAGCCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTGGTAATTTTGTTTTTCCTACTAATGAATGTCATTTGACTGTTACCTTTTACTATTTCTGTATCATTGTTAACATCTGATTTCATGTTCTTTAATTCCCCTGTTCTTCCCTCTGGCTAATTTTTTTGGCTTCTTTCATGTGTTGCTATACGATAGCATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAGGTACATAATATGCCATTTACACTCTTCTCTCTCTGGTTTTGTTTTATGTGAGTTTGTGGGAGTGGGTTAGTTTAGGAGTTCTGGACTCTTGATTGTTGAGGTACTTTTGTTGGGGTTAAGGAAATTATCAATACTTGCTAGTCTTTAGGTTTCCTTTTTATGTCATCTTAGCTTAAAATGTCGAACTGTGCTTTATCAAGGGATATCCAGTCTTCACCTCTTGATCTAATTGGACTTCTGCAGGTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTGGTCAGCTTTCGGTGTTGCTTAATTATTCAGATATATACAGCTTTTCACTCTAAGCGTGTGATGTTATCTTTCTGAAGATTGTGCTCGTCTACCTTTTCAGTTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAGGTCAGTGCGTCTCTAATAGAGTATTTAACCTTTTATGGGCTTTCTTCCAGTTTTGATAGATATTAATTTCCTCTTTCTTACTTATAGGCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTGGTATGTAGTAATCATCCCTTCTTGTAATGTGAAGTGAGGATTTTCCTGGGATTGAAGCATTTTGACAAGGGTGCTGCTATGGAGAAAGTACTTGTCGTCTTAGATTTTTGATGGATTGAGCTCATTTTTAAATATTAAGAATTCTCTACTATTTCATTTGATTTTCAGATGCTAAGAGGAAATTGTAGATGATTGAATTTTGTTAGCTCTAAGTGTGATTGCTTCTTTTCTTGTCAAACCACTAGTTGTTTCTTTATCCCGGTTCAAATCAGTTTATTGGGTGGGTGTTGTTGGTTTTCTTTGTACACTATACCTCTAGTGAGAAGTATTGATTTCCACTGCATTAGATTTTGTGATAGTGGATTAAGCACTATTTTTTCTTTTATTATGTGATAAAATAAATGAAATTTATGAGGTCAGTGGTTTCTGTCATTCAATCATGCTATTTTCTTGATTATCTACGTTGATGCAGGTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCAT-GGTGGTGATGATTTG</genome_strand>
        <mrna_strand>AAGAGAAAGAGAGAAAGCAGAGGGGAAGGAAAAAGACGGAGGCCCACCGCAAAAGCCCAAAAGGACCTCACCTTCTTCATCGTCTTCGTTGTTTATGTTCATCT................................................................................................................CGATCGGTTGTGAAAACCCTAAATTAAGGTCGGCGATTGTAGGATTGTGGTGGATCTGTTTTGATCAGTCAACGTGATGACTTCTTTAAGCAGAGAGCTGGTGTTTTTGATACTCCAGTTCTTAGATGAAGAGAAGTTCAAGGAAACTGTGCACAA.....................................................................................................GTTGGAGAAGGAGTCGGGTTTCTTCTTCAACATGAGGTATTTTGAGGATTCGGTTACTAATGGAGAGTGGGATGAGGTGGAGAAGTATTTATCTGGGTTTACTAAGGTAGATGATAATCGGTACTCAATGAAAATATTTTTTGAGATCCGAAAACAGAAGTATCTGGAAGCACTTGATAG...............................................................................................................................GCATGATCAGGCTAAGGCTGTGGAGATTCTAGTGAAAGATCTGAAAGTGTTTTCCACATTTAATGAAGAGTTGTTCAAGGAGATAACGCTCCTCTTGACATTGCAGAATTTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAG.........................................................................................................................TTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGA...............................................................................................................................CCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTG.........................................................................................................................................................CATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAG...................................................................................................................................................................................................................................................GTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTG....................................................................................................TTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAG.......................................................................................GCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCATGGGTGGTGATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565344" ref_strand="+" ref_description="SGN-U565344 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147833902|emb|CAN66493.1| (e_value=7e-158) hypothetical; (*ATH) AT1G52540.1 (e_value=3e-125) | Symbol: None | protein kinase, putative, contains protein kinase domain, Pfam:PF00069 | chr1:19573727-19575873 REVERSE | Aliases: F6D8.24, F6D8_24; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=7e-72) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; ">
      <seq>tgcacgacagtcgcccattcttccttctcccccccactcccccaccccccaaaccactttcggtttcaactgaaagcagaattcgatagagttggattgactaaaagcatccccatttggaatccactgttttctctctctctctctctctgtagcttttttgcaatctttgattcgaaggaagtttctttgctgtaacggaaatgggggagctttattctttttgagcagagaaaaacagtcagataaagtgattgctgagtggagtttacggctttttcttcttttctgctatggggttctgaaagattgattcttgatcgacttatttgatatactcttctgttaagaaagagaaagttgagttttttgctgtttcaatattcaaaattcaaaagctatggacttttcgtctatattttgctgtgtcaagggttcagatcgaaaggggcaagcgaagaagcagccaacatggagggttttttctctgaaggagttgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcggttactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagcaagcaacgtgctgctcgattctgatttccaagcccaagttgctgattttggatttgcaaagttcatcccagatggtgcaacacatgtaaccactagagtaaaaggcactctaggctatcttgcaccagaatatgcaatgttagggaaggcatcggagagctgtgatgtttacagctttggtattcttttgctagagcttgctagtggcaagaaaccaattgagaaggtcaatctaactgtgaaacgcacaatcactgattgggcactaccacttgtgtgtgaagggaagttgagtgaacttgcagacccaaggttgagtgggaactacgtggaggaagaattcaaaagagtggttcttgttgctctcgtttgtgctcaaaatcgacctgagaagagaccaacaatgcttgacgttatcgagctactgaaaggagaagcaaaagagaaattcacagctttggaaaatgatgatatgttcaagattcctccagtagtggatgatgatgttttgtcaggaacagaaggcaatgcagactctactgcttcagaggaaaaagaaccaaaaccagaaattgaaaaggtagaggtacaagcttaagagaatgtgggtaattgattgtggcttgttcatattgaatttgtgtaggacttaatgtattttttggagaagaaatactgataatcattacttggaacaacaggtactttttttttttttttttttgaattggaagtatcatttcattgggttgtgcaggaatggatgttattctcgtctttcgtgtgattttctcgtgtaatatgttgaacacaagaaatgaaaactggttatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34605" stop="29225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34305" g_stop="33862" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33596" g_stop="33449" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="592" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="855" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30410" g_stop="29525" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="1744" r_length="889" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U565344" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1741</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34305" e_stop="33862"/>
          <exon e_start="33596" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="29525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACGACAGTCGCCCATTCTTCCTTCTCCCCCCCACTCCCCCACCCCCCAAACCACTTTCGGTTTCAACTGAAAGCAGAATTCGATAGAGTTGGATTGACTAAAAGCATCCCCATTTGGAATCCACTGTTTTCTCTCTCTCTCTCTCTCTGTAGCTTTTTTGCAATCTTTGATTCGAAGGAAGTTTCTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCGGTATGTGTGTGCTAATTTGTTCAAAGCTATTACCTTTAATTACTCTTCTTGTAAATTTCACCTGGTTTTGTTTCTAATTAAGGTTTGAGTTTAGCTATTTGTACATGTTTTTTTACTAGAGTATTCTGATTAGACACTGTTGCATTTGAATAATTTCGTGCTGTGAAGACTTCTAATTGTGTTAATTTGGGGAATGCTGATAAACAAAGTGCAGGAACCTATTTTCCCCCTTTTTTGAATTGATTTTCGATTTGAAATGATACAGAAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTAC---TTTTCTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGTTTATATGCTG</genome_strand>
        <mrna_strand>TGCACGACAGTCGCCCATTCTTCCTTCTCCCCCCCACTCCCCCACCCCCCAAACCACTTTCGGTTTCAACTGAAAGCAGAATTCGATAGAGTTGGATTGACTAAAAGCATCCCCATTTGGAATCCACTGTTTTCTCTCTCTCTCTCTCTCTGTAGCTTTTTTGCAATCTTTGATTCGAAGGAAGTTTCTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCG.........................................................................................................................................................................................................................................................................AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACAATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTACTTTTTTTTTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGGTTATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586056" ref_strand="+" ref_description="SGN-U586056 Tomato 200607#2 [54 ESTs aligned] (*GB) gi|157343002|emb|CAO65714.1| (e_value=1e-74) unnamed; (*ATH) AT5G32440.1 (e_value=1e-66) | Symbol: None | expressed protein | chr5:12094126-12095787 FORWARD | Aliases: F18O9.50, F18O9_50; ">
      <seq>gcttagacaaacattagttgcggcaacatgacggtgtacttccataatctccaccatgaattcccggaaggacgtaacactctcccctttaagcgcgtgttcggggacgctccttctcatctccactatataaaaagaggaacctaacccaccaaggcaaaaattgagtgcacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataattttgctttctgcttctcagtttgttctacaatttttttgctgtgatgaatgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40299" stop="44493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40599" g_stop="41077" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="600" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="821" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="995" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43768" g_stop="44193" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1421" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U586056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40599" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGA</genome_strand>
        <mrna_strand>GCTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587380" ref_strand="+" ref_description="SGN-U587380 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttttttcattttctttcttgtttttagttatcttttttaaattcacagttttgatgttttccttgtataacaatatctgatatatatatatatatatatatatatatatgtttatctttttatgatgtactgtttaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40496" stop="41637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40795" g_stop="41336" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U587380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40795" e_stop="41336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</genome_strand>
        <mrna_strand>GAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587379" ref_strand="+" ref_description="SGN-U587379 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT5G32440.1 (e_value=3e-12) | Symbol: None | expressed protein | chr5:12094126-12095787 FORWARD | Aliases: F18O9.50, F18O9_50; ">
      <seq>caatcgccgacaccgcattaacgttgccgcctgtttccaaaaagattcggtgcttttcctctacttttcccggtcgggtcccgaccaggttgatcgaacaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40643" stop="41580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40943" g_stop="41077" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41280" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="199" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U587379" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40943" e_stop="41077"/>
          <exon e_start="41216" e_stop="41280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGA</genome_strand>
        <mrna_strand>CAATCGCCGACACCG-CATTAACGTTGCCGCCTGTTTCCAAAAAGATTCGGTGCTTTTCCTCTACTTTTCCCGGTCGGGTCCCGACCAGGTTGATCGAACAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579212" ref_strand="+" ref_description="SGN-U579212 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157356514|emb|CAO62701.1| (e_value=9e-156) unnamed; (*ATH) AT1G80030.1 (e_value=5e-157)  Symbol: None | DNAJ heat shock protein, putative, similar to SP:Q05646 Chaperone protein dnaJ {Erysipelothrix rhusiopathiae}; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats) | ch... ; (*SWP) sp|Q8DKR7|DNAJ_SYNEL (e_value=1e-89) Chaperone protein dnaJ OS=Synechococcus elongatus GN=dnaJ; ">
      <seq>cttcttcttctttcttgtgaaaaaaaagaagcaagcaagcatcaaaacgcgggacagttaaccagtcttctgtagtccaatgaactcgacggcaatggccagcacagcatctctatctctccgtccttcttctctcatctccgaccgttcccattctccctgtcttcctccttcctcctcctctagtttcttctccggtgggacccgcttgtgggcccatacgaagtttatatccatttccttttcttcatctcagaagattccgggacgacgttttgggagattggtggttgctgctgctgccgattattactctacacttggggtcccaaaatctgctaacagtaaagacatcaaggctgcttatcgaaggttagctcgacagtatcaccctgatgtcaacaaggaacctaatgcaccagaaaagtttaaggagattaaagatgcttatgagatactatcagatgacaaaaaaagagcactatatgatcaatatggtgaagccggggtgaaaagttctgtaggggcccaagccggtgcttacacgacaaatccttttgatctatttgagacattctttggaccttctatgggtggttttggaatggatggagctggatttggaacgcgtcgccgcagtactgttaccaagggtgaagatctacgttacgacatgacattagaattttcagcggctatctttggagctgaaaaagatttcgagctttcacatcttgaaacttgtgaggtctgtgtgggaactggggcaaaggtaggctccaaaatgaggatatgttcaacttgtggtggccgaggtcaagttatgaggaccgaacaaacaccgtttggcatgttttctcaggtttctgtctgcccaaactgtggtggggatggtgaaatgatctctgaatattgtcgtaaatgctcaggcgaggggcggatacgagtgaagaaagatataaaagtcaagataccccctggagttaacaagggaagtatcctcagagttgctggtgagggtgatgcaggtcctaggggtgccccaccgggagatctttatgtctatcttgacattgaagagatacctgagatccaaagagatggcataaatctgatttcaacagtttcagtcggttatctagatgctatacttggggctgttgttaaggttaaaacagtggatggtttgactgatctccagattcctccaggcactcaacctggggatgtgcttgtcttggcaaggaaaggagcaccaaagctaaataagccatcaatacgcggtgatcacttgttcacgattaaagttagcataccaaaacgcatcagtgtgatggagcgtgaattgcttgaagaacttgcttctcttactaagggatcaagcactcgtacaaaaactcgcccggcggttcagcaaacggcaaaagttactgaaactccagtaggttcagattcaagtgcagcaaaaactgatgagtcatcatcagaagatcgagacgatccattgaagaagttagcaaattttgctgggtctgtcgtaaatggtgcactgaaatggttaagagacaacctgtagtacttggtgctgggatactgcctcagcaatcttcttttatacgacaatggcattgaattttatgtgcttcaaaacagccattattgcatcttgcggcctttcatttcttagaataactttttggtgattctgcctgtaaaattgaatccagccaccttattcttttaggaaacctaatccttcgcctttgtaaattctgacaaatatattctccacctcaaagaagttggtgagatggattctaacagctatttttgtataagaaattttgtatgtcagcaagcatttaacagaaacccagaaatatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44339" stop="55838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44639" g_stop="45023" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45024" i_stop="45573" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45574" g_stop="45642" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="454" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45643" i_stop="46020" i_length="378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46021" g_stop="46113" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="547" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47274" g_stop="47392" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="666" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47393" i_stop="48152" i_length="760">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48153" g_stop="48348" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="862" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48349" i_stop="49809" i_length="1461">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49810" g_stop="49985" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="1038" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51437" g_stop="51566" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1168" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52155" g_stop="52315" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1329" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53447" g_stop="53538" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1421" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53539" i_stop="54700" i_length="1162">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54701" g_stop="54809" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1422" r_stop="1530" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="54810" i_stop="55182" i_length="373">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="55183" g_stop="55538" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1531" r_stop="1886" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U579212" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44639" e_stop="45023"/>
          <exon e_start="45574" e_stop="45642"/>
          <exon e_start="46021" e_stop="46113"/>
          <exon e_start="47274" e_stop="47392"/>
          <exon e_start="48153" e_stop="48348"/>
          <exon e_start="49810" e_stop="49985"/>
          <exon e_start="51437" e_stop="51566"/>
          <exon e_start="52155" e_stop="52315"/>
          <exon e_start="53447" e_stop="53538"/>
          <exon e_start="54701" e_stop="54809"/>
          <exon e_start="55183" e_stop="55538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAGGTACTGCAATCCTTTCTTTCTTATTCTTAATTCTAACTATTATTCACTGTCATTGTGAGAATCAATTTTTAAGAAAACAACCAAATGATGCTCCTTCGGAATTTTTGAGAAAACGGTTACACAAAATGATGATTTTCAAAATTGTGACTTAGGTTGGTCGTGCATTTGAGCTCCAAGAAAGTAATCTTGTGGCTGACCAGTGCATTTTCCTTTGGGATAACAGCACAAGTTGCTAATTATTAGTTTCCGTTCCTATTTCAATTATTTTATGCTACTGTTTGATCTCTTTATTTGTATGGTTGAGCTGCCTCTATTCCGGAAGCTGATGCGTTATGAATCATTGGTCTGCATGTGTTATCTTTTTCTTTGTGTTGTTGATTGTTTACTTTCTGTGCGTGTCCATATGATACATACTCTAGTAGGATAATGTTACCACTACATGCTAGACTTTCACCCAGTTCTTTGGGCCTTTACAATTAAGATAGTTCCACAGCAACACATTATTCTATTCTCCATTAATCCGTTTCTGACTTTTGATATTGTTTTATAGTATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAGGTAAATATGAAAATTTACTATTTTTAACATCTGAACCCTGGTAGTTTTCTTATTTCCTTCTGAAACTATTGACCTTTAGATATATGTGGCATTGCCATCTTTATGTCCCCTCCCCTCCCCTTTACGTGATGGAATTACTGTTTATCCACTTATTCAATCCGTTTCTTCATTCCTCTACCTTGGAAACTGCATTGGTTGTCTGTCTACTAAATCCAAAGTGTTCCATTTTCTCGTATATTTTGAAAGTTGTGTGCTTTTTAACTAAGGTAGACCTTAGAAATTCCTACTTTCAAACTTTGGAATCTTGGTGTTAGTATGTTTACATATTTCTCTTTTGTTTTTAACTCTTTGAATCAACTCTGAAGTTTCACTTTCCAGATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACGGTATGCCATAAATTCTTATTTTTTTTGTTTTCAGCGTGATATTATTGCTGTCATTCCAAAAGGGTAATCTTAATTTCCTTTAGTCCTTCCAAAATTAACATCCACTTTATTTAAAAGAGAAGTTTTAAGTCATGTTATAGAACACACATTGTATGCCCAACTTTTACTCTTCTTATGCAACTTCTATTATATTTGTCGATAACTTTTATGGCCCAGCATGTTATCCATACACAACTCATTTTCAACTTTTTTCTTAGTTCCCCTGCCAATTCCAAGTAGGACGATGAAATTGTGACTTGGAAGTACTATCATGGCTTATCAAAGAAAAGATACATATCATGATAAAATTTTCTCACGTAGTTACTTGGCTCCCTCTGATGTGAAGTCCTTATGTTGCTTTTGCTCATATCGTTTGTTTAATTCATGTTTTTCTCTAATTGGTGACTTTTAGGTGTGCCATCTATTTTAGATTACATACTCAATATAGTTCAGTTATGTTCTTGTACTATAGTTTACATACATAATATCTGCAAGTTTTTGGGAGTTCTAGGTTTCCAGTATTTGTCCCTCCAACCACTATAAGTGCTAATTCTTTTGCCTTCTATTGTTCCCATCCCCACTTGAAGAGGAATTGACAAGGTTCATAGAATTCTTTGTGGTCATTCAATTGTAAATGGGAAAAGAGTTCTTTTCACTTATGTTGAATGACACACCAGGGGTAATATCAGTTACTTTGCCATACCTCCTGGCTCATCCCACCACTTAAAAAGGAGTTAAATATTAGTTCAAGTAAGATTATGGATGAAAAGAATAGAATACTTCATGCCTATGTAGGTAAATGTATATCAATTTGCATATAGAATGCCAAATGAAAGAGTTGATGCACAACTTTGGTTTCTGTTTACATGCTGTCGTTTTGCATGCTAGCCAAAAAATTGGGTTTTGTTTGATGTAGGACTGAGAGTTGAGTCTAAGTAAATGTGTCAATGTGTGAAGGTTGCGTTCCTAGATGCTATTCTTCTAATTATTCACTTCCCAAAAAGGGTAAAATGAGTAGGTCGTAGAAGAAAGTGGGAAGTTACATAATAAGTGCATGGTCATATGGAAATTATCTTTAACCCTAGTCTGTTTCTCTTTCTTTTTGGTGAATTTTACTGCAGACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACGGTAAGTCAGTAGCTGATTGGAATGATTTGACACTAACCATCTTTATTAGAATTCACGTGTGTACTTATAACAAAAAGGATTTTGTCATAAGTATACTTCGTTAACCATGAGAAGAAGCAGTTTCTGATAACTAATATGCAACATAGTATGACAGGTAAACTTAGGAGGAATATAGCCTCTAGTCGATTTTATAGCAGTGGTGAAGCATATAGTTCCCTTAGAATGATAATTTGTAGAATAAAGTAGACCTTCTCGAAATCATGGTCACAATTATTGCTAACCAAGAGGGGAAAGTTCATTCGGACAACTTTATAGGCTAACATAGTATGATTTGACATTTGGTAAAACATAAGAACCAACAAGTCCTAACACCATTCCAAAGTAGTGCTGGAGTCTTCATTAGGAATCAGTTACCAGTTTCATTTATATTCATGTTATCTGTACTTATAACCTGAAGAAAAAACTGAGTATGATATTCAGCATACTTTTGTGCTTGAAATGGTCTTTGCATGAATTACAATTTACAGGTATGCTTTTCTTTAACATATCAATCCTCTGACAGAAAGAACTATGCTAAGTTCAAACTGGACGGGCTAATTGTGTATACTTGCACCAGTGAAGCATAAAATTTATCCTAGGAACAATGCATACTTTAGAAGCATAAAAATAGAAATAGATAGACACTGTTTCATAAACACTAAGAGTTTGCAGATAAAATGATATGATGTCAAGCCTAATTTTGCACTTCAATGGCTTTCAGTTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAGGTAATAGCGTATAAATCTATTTCTTTGGTGGTCGAGATAATTTAGATTGCATTTGTATATCAATTTGTTCAGATTTTATTCATTTGGTATTACAGTATGAGTCTATTTTCAGGACTCCTGAGTCATTTTTGAGAAAATCAATCTGTTTGCTATTGCATGTACAGAGGATCAGCTGCTAATTAGGGGTATCAGTTTTAATTAATGGAAGTATAACCTTCCTCAACCTGTCTAGTTGGGTTGCAATAAACTCATTGATAGGTCAATTTTGGGCTTAATTTAAATTAAATGTTGTCTAGTTCGTATTCATCCACTTACTTTCTCTACCAAGATAAGAAAATGATGTTTTAACTTCATTTGGTAACTAAACAAATTGTAAAACATACACACAAATAACAGATGAAACGTAATTCTGAATTAACCAGGTGGGGCCATGGCTATAAATGTTTCGGCTCAAATTAACCTACTCTTCATGACACAAGTAAACTCTGGGTGGTTTAGCATGGTCCATATATACTCAATCTATTTTAACCCACGGCTCAAATTTGGCCCAACTTGCCAATTTGACACTCCTACTACTAACCATGTAATTTTTGGAACACTGGGTTTTGCCTGAACACCATCTCCCTGATATTGCGTAGAAATAATTGCGAGGCAGTCCATACATGCTATAGAAGATCAGGTGGTTACTGGGTAGTGTTTAAAGCTCTCTATTTAAGGGATAGCTACATCTTCGATAAGGCTCAGAAAGTTCTTGGAAAGAATTTCAATGAAAAGATGATTCAATGAGGTTTGAACAGTTTGATCTAATAAAGTCTTTCCTACTCCTGTGGAACAATTAGGTAGGTAACACGAAGCGCTTCCGAACTGATGGTGCCGAAATTGTGCTTGAAATAAATACGCCGTACTTAACAATAGAAATAATTGTGGCTGAAATGAACTAAAATTCTTTAGCTTGCTTTGAACAGAGCATCTAGGATGTGGTAAAAGTTTCCATTATTGAAGAAATCAAGGGTAAGGATTAATTTGCATTTTTAGTTGATTGGAAAAGTAAATAGTCAAATATAATCTAAAACCATGTAGTAAAGTGATATGCATGACATGGCATGACTACTACAGACAAAAGAGCATAAGTCAGTCTTCCCTTGCACAAAGATGTCTTAATGGTTGAAGAATCTGTAGTCAAAATGTTTTCTATTTGAGAAGGTAACATGTATGTACATTAAAAAGATTGCTTGTTTTCCTGGAAATTGTTAATTTTTTACTGTTGCAGTTTCTTAACCGGTATGACATATTTATTTTGCTTTAATGTTTGGACTGATTGGTTGTCTATCTTATTTCTTTTGGCTAATTTCTTGTTTGGTCTCTCAGTTCTTACATTGCTGGGCTTTCTCATCTTTGTCACTCAAAGAGTATATGCTCATACTCATTGTTACATTTTCCATCTATTTGGATTAAGTGTAGGTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGGGTATGTATTCAGTTATATAGTGCATTTCTGTAACAATAGTCTGCATAATTGTCCTGGGTTATGTCAGTAGACATCTCTGGGATTCTGTATGTCAGTAAACATAATATTGACATTATTTGCGTAATTTTTTCTTCTTTAGTCTTTTAGGATCACTATAATGGTCTTGTTGATATATACAGGGAGGAGGACCCATTACACACAGCTCCACTGATATTCTTTCAGCCAACTGTAGCTGATTAACTGAGTCAGTTTTGACTATTGTCTTCCAAATGTGCTTTACTTACCCTGCAAAGAGAGAGTAAAAGGAAAAGCTGATGCCTTGCCTCCTTCAGAGAAATGTGCTCTTAGCTTACCTAATAACAACTAGACCTATGACAACACCTTAAAAAAATGAGAATCAACAACAACATGCCTAGTGTAATCCCACCTAATGAGAAGAAAAGTTCAAGCTATCCTTCTTAAGCTTATGCTCAAGATTTCCTTGTTCATACATTAAGTCATTAACCATGCCCATATATTTTCCAAATTTCATCTGTCAAATTGGTTTGAAAAAGGGTTGGTTCAGGTTGGACTAGGAGAAGATAGAAGATGAAGATCTTTAGTATGAGGCTTTTCATGACTGTTAAGATTATTTCAGATTAAGGCGGAGCATGCATGAAGAGTCAAAAATGCTTCTTCTATTCTTTTTCCTGTGCTGCTAGGGAGTATGTATTACTGCTTTTAATTTTAATTTTAAGTGATTTCACAATCTTGGGGAATGTAGGTGTTCCTTCTTGCTGTTTTTGACATATGGAGAATGCAAGTGACATTCTATGATTAAGACTAGCACATTTGGATGAGTAGTCAACAGATACTCCTTTAGTCCCTGACTATGTGCTCAGAACCTCAGAAAAATGTTATAACACCCACATCGGATCCTCAAAAATGCATTTTCTCTGGAGGTTTGAATGCGCGTGCAGTGACATTTTTGGAGGATTCAAGCAAGATAGGTCCTTGGTCAAAAAAAGAAAAGAAAAGAAATACTCCTTAGTCCTAAATTCCCTCTTGGATCTAAAATATAAATCGTCAGTTTAAATAGAGTACTAGCAACTATTGGACCTAAAGTAATTCAGCCAACATAACTCACTAGTTTGTAATTCCTATGATGGACCTTTTGCTTCCATTGCGTTTTATTGTTCTCTAATACATGCATGGCTTGATATTCTAGATCTTTGAGAAGATTTCTTATATGTGAGTTTAGGTTAACCCTGTCCAGTTTTAGCATCTTGAATCATCATTATATGAAATGAGCTTAAATGAAGGCAGAGATCATTTAGCCGACCCCAATTCGTGGGATTGAGGATGACTTGTTGTTCTTGTTGTAGTCTATCACATGTTAGATGTTCACATACAAATTGAGATTGAGAACATATAGCTCAGTTTGTTAGTTCATTTTTGACAATGTTTTGCAGTGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAGGTAATTTTACACGATATTTGTCTTGGCTCCTTCCATATTCTGATAAGAATGTGAAATAAGATAGTAATTCCCTACAGCCTGTATGCTGTATCGCTATTATAGTATTTTCAATGAAAAAGTTTTTGTTACTCTCAAAGATAGAGCCTGTGAAGTATTGTTTTTGGTGAGTCAGGAAAATAGACATTCAGACTTTTTAGTATGAGCCTAACTCATCGGAACCGGTTCTTTTTTCTCCTTTCAAATGAGCCTCTTTCGAGAAACATCCCCTATCAGATCGCAAGGTACATCTACTTGAATAATGAGAAATGAATACAAGACTCTGAAAGCTTCATAAATTTTTTAATTTCCTCATACAACAAATTCATGATAGTACTGTAATTTTCCTGCCATATGATGAGATCCTTCTATATTCCATATGTTTGTCCGTTTGTTGTTTAGTCTTTCTCCCTTGCTGGAAGAGGGGGATTAAAGGTGTGAGAGAAAGAGCCAAAGCCTGGCATCTGTCAAGGCACCTCATATTGCCCTTCAATTGCCTTTATTGATATCATATTTCTCAGCCTAGTTCCTTCTCCCTGATGTCCTGGTCAGGTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAGGTGCGCAAGTTGTAGATGATGAACTAATTATACATATCAGTTTTCTTACCTACTCGTGTCACTTTGCCTAATGATATTCCTGAAGAGTATGCCAGACACGTTTGGGAACTAATTTCCTGAATAACTATAGATATATTTTTCCTTGAATATGTCCAACAGTCCTCCTCTTTAAAAAATGGACTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTCCAGTAGTCGTATCAGGGGTGGGCATCATTCCGTTATGAATAAACCGACCAAACCAAAATTTTCTGTTTCGGTTTAGTATTTTTGGTATTCAGTTTGATTTTTGCTTCTTTTAGAAAAAAATGGTTAGCCGAAAAATTGAAATTTTTAGTAGATGTGAAAACATTTTTTTCTCACATAACTTTACCTATCTGTTTCAATCTGAAAACTACCATGCCTGACTGAATCCAACTTCAAATGAGTTTGATCACCTCCTCCATCTGTATCATGAAGGCACATGAGGAAGTGAAAATACCAGTATTTGTTTGTTGTATACTCGATATATCTCCAAGACTTAATTGAAATGCATAATATACTTGCATGGCAAAGTGCATCATGATCTGGGTGATGCGAGTGGATTATCATACTTCGGGAAAATATTTTGTTTCTTTGTTGTTATTTTTGTGAATTTCCTCAAGCAAAATCTATTTTCAATAAGAGTTAGAAACTTATTCAAATTGTATCTTAACCCCAAAGTGAATGTAGTAATTAATGTATAGAATGTGTTAAATACTCTTGCACTCCTTTGCTCATTTGCCAGCCAGCCTAGTGGTCATATGTCCTGCTTCTGAAGTCAAAAAATATAAGGAAAAGGAACCATTACTCAGGCTACTGGTGAAAAATCAATATATTTCCACTCATCAGTAAACACCATCTAATTTTTTGGTTAGTAGTATCTTCAGCATACAAATTCCTATGAGCAAACAAATCCCCCTGGTCTTCTGAAAATGATGATATAAATGCATATAGGAAATGCTTTTCACATCTAATACAGATTTGATATTGTTACACAAGAATTTAGGGCTTGTATGCAAGTGCTCTCATAATTGCTCCTGTCTATGTATGGGGACTTCATTCATGGTTCTCTATTTTGTAGTGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGGGTATGATCACTTCTCGATTCATCATTTTCTCAATTCTCTATACGTGAATGACAGAGTTAATGACACTGGGTTGTGACATTAGTTAAACATGATGAGTTCCAGAGAATAGAAGGTAATGATCTGTCACTTGTGTGGCTGATTGTAATGGATATATCCTTCCTAATATTTACTTACTGTAAATGAATATATCATTCCAAATAAATGCTGCTCCTCTGGTCCAAAATGAAAGAATTTTTCAAAGTCAAAAGATGTATTAATTAATTTTTTCCAAAATGACCTTTCTCTTAAATGTTTTTTTCCCCAACTATCTCTAGTTTTAAGAAAAGTTCAGGAAGAAACAAAGGGTAATATTGACAAATTGCCATTTAATTTACTGACTTTCTTAAGGGGTGTGCCACACCCCAAAAATTCATTTATGTTGGAATGGAGGGAGTACATCTTATCTTGTTTGGAACTAGACCTGGGGTCATCAGCACTGAAATAGATGCTATTGATTATCAATAAAAAATAAAATGAAGATGAACCATTTGCGAGTTAAGTGATAGGTTTTGGCTACTGTATTTGGATAGTTACTTAAAAAACCCTAGATCAACCACTAAGTTTGACTTGGAAATTTGTGTGATGCGCATCAAGTAGTTAAAACTGATACAAAATACGGGAGAACAAAGAGGAATATATTGTTGCTCGTGAATTGAGAAATGAAGTTATTGATTCTAACCCATACTATATAAAAGCTCTGTTATTTTTCTCAACCTAGAATATCCCAGAAGAGAACATCCTACTAAAGTTGGAAATATTTTCAATGCAGTTTAGATAGAGCATGCAGCTCAGATAATCAGAGCACGTGATTAGAAAATACAGTCAAGTCCTAGGAGTACCTTATACAGTTGACCCAAAAAGGATATATTTTTTTGATGAATGTCCCAAAAAGGAAATACTTATCACTATGAGGATAGGAAAATTATTCTCTGAATTCACTCACAGTATCAAAAGTAAGAATTTCTCCTCACTCAAAAATAGGAACACATGTTGCTCCGAGTGTAGGAAACTTATGATCAGGTTAAGGCAAAATTCATGGTACTTGGATGTTGATAGAGTATCTCATTTACAGTCAGTACAATCCTTTGGCATAAAATTTTACCATCTTTTTTCTGCTTCGCAGCAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGGGTAAATTTCTTGATCATTATTCGTTAATTAGGAATTCTGTTGGAAAGTACTTAGTTCTTGGTAATTTAGTCTTGATTTGGGAGACGCTTATGTTGTTAGAACCACCGAACCACACAAGTCACCTATTTTTGGGGTCTAAAAACATGGTAGATCTTTTTAAGTGGTTTTGCTGTATGAATTCAGCAACCTTGCCAGAAAATAGACCCACATTCACAAAGCCGTGGTAGAATGACCCTTTACATTGGACTTCAGATTACCCATAAATCTTGCATCATTTATAGTGCCATATTTCTGCAATAGTTAATCTTAACCATGTTTAGTTTTATTCTGTTGCAAGTGTTTCTTCCTTCTAATTAAAGGTTTGTGATTGCAGGTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCC</genome_strand>
        <mrna_strand>CTTCTTCTTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG..........................................................................................................................................................................................................................................................................................................................................................................................ATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTTAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569673" ref_strand="+" ref_description="SGN-U569673 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|18400941|ref|NP_566531.1| (e_value=1e-14) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G15900.1 (e_value=8e-17) | Symbol: None | expressed protein | chr3:5376257-5377089 REVERSE | Aliases: MVC8.2; ">
      <seq>caaactgacccgttttcttctgagaacatggaagctaccgcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatatatataagatccaagtacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56800" stop="55523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56500" g_stop="56246" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55823" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="610" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U569673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56500" e_stop="56246"/>
          <exon e_start="56177" e_stop="55823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGACCCGTTTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</genome_strand>
        <mrna_strand>CAAACTGACCCGTTTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582689" ref_strand="+" ref_description="SGN-U582689 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|1711509|sp|P49971|SR541_SOLLC (e_value=0) RecName:; (*ATH) AT1G48900.1 (e_value=0) | Symbol: None | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C), identical to SP:P49967 Signal recognition particle 54 kDa protein 3 (SRP54) {Arabidopsis thaliana} | chr1:18088450-18091547 REVERSE | Aliases: F27K7.8, F27K7_8; (*SWP) sp|P49971|SR541_SOLLC (e_value=0) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum; ">
      <seq>aatcgattggcattcacaaacattgaagttccttcataatcctgttgatttcgttaatcgatctccgtcaagatggtgttagcacaattaggggggagcatctcgcgtgctctccagcagatgagcaatgccacaatcatcgatgaaaaggtcctcaacgagtgcctcaatgagatcacccgtgctcttctacaggccgatgttcaatttaagctagttcgtgatatgtcaacaaatatcaagaagattgtcaatcttgaagatcttgccgctggacacaacaagcgtaggattattcaacaggctgtgtataatgagctctgcaagatattggatcctgggaaacctgcatttacacttaaaaaagggaaacctagtgttgtaatgtttgttggtttgcaagggtctggaaaaactacaacgtgtacaaaatatgcttaccaccaccagaaaaggggttggaagccggctctagtctgtgcagataccttcagagctggtgctttcgatcaattgaagcagaatgctacaaaagctaaaattcctttttatggaagctatacagaatcagatccagtgaaaatagccgtggacggtgtagaaacatttaagaaggaaaattgtgatctaataattgtggataccagtgggcgccacaaacaagaagcagctctttttgaagaaatgcgacaagtttctgaagcaacgaaaccggatctcgtgatttttgttatggatagtagtattggacaagctgcttttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgggtggtttgcagaacttaatgaagcaaatgggttccgcccaaggacatgatgggtatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56835" stop="64629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57135" g_stop="57437" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57438" i_stop="58024" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58025" g_stop="58124" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="403" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58125" i_stop="58297" i_length="173">
            <donor d_prob="0.542" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58298" g_stop="58451" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="557" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58452" i_stop="59104" i_length="653">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59105" g_stop="59255" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="708" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59319" g_stop="59467" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="857" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="958" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1116" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1231" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64018" g_stop="64329" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1544" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U582689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1543</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57135" e_stop="57437"/>
          <exon e_start="58025" e_stop="58124"/>
          <exon e_start="58298" e_stop="58451"/>
          <exon e_start="59105" e_stop="59255"/>
          <exon e_start="59319" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAGGTTTGTATTCTTTTCGCCGGAAATTTTACCTCGTTATGTTGATATGCATGTAAAGATTATCTTAGATGAACTGTTGAGAATTTGATATACACAGAGTAATGCCTAAAAGAGGCTGAAAGATTTTCAGGGACATATTTGTAGGCGTCTATATCAATTTCTTTGCAGGTTGGAGGGGAACTGTTCCCTTTTTCTTTCAGTATCTAGTAATTTAGATAAACAATGGAGACATCTTTTTACCGCTCAATACGTCTCTTAAGTGGTGAGACTGGTACACAAGCCTCCTCCAATGTTGTTAGCTTACGGAGCTGGGAAGGCATCAAAAGCTCCAATTTTGTTAGCTTATGGTGCTGGAAAGGCATCAAACAAGAAAGGAACACTAGTACTTAATTAAAAAAACCAAGAAAAGAAAGCAACTGAAATTATAGGCCATCTATCATGATATCTCTTCACTTGTTTCTTCCTTCTGGTTTTCTTTTGTGTCCAGTTTGGGTTTCATTGTTTTTTTCTATTTTCTTCATCATTTTATACTTATGTTTTCCGCACTATCTTCTTGTATTGACTTGAGATAGTTTCTTTCATTTGTGTAGGCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAGGTGTGTTAATTTATTTTTCTACCTTAGGGTATGTTCTGTAACAAGTTTATATGTGAGCTAGCATTAACTATCTGAGCAGTAAGCATTATTTGGCGCAATTATTATAATGCACACCAAGAGCTTTTCCTCTTCAATTACTAGATGGTATCCTTATGTCTTGTAATTTCACACAGGGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAGGCATATCCTATTCTTAATCTATTATTGTTTTTGATATTTGATTATTATTGTTATCTCCACACATTTAGATGCTTGATGCTCATCATACTATCTGATGAGGGTCTATATTCTTCCGTTCTTCTTCCTGACAGAAGAAGCCGAAACTCATCATTTGTGTTTGTTTAATCCAATCAATATACAATGTCATAGGTCCATAAGCATTGATAAATTTGAAGTGCATTTAGATAAGGGAAGTGGAGAATGAAATCTAAAAAACATTGCATGGTGTATGAAAAAGTGAATGGTTCTTTGCTAAGAAATGTCTCAAGATTAAGTTGATTAGCTGCCTGCTGCCTAAAAGTCATCATCTGCACTATCAGTAAAAGCCAATCTGTTAGAGTAATTAAGCTTTCTCAGTGTTTTCCTTTAAAATTCTTTTGAGCCAATTTTTCATCCAAACGGGAAAAGGAAGAAAAGAAAGAGAGCTATTCTTGTTGCTGCTAGGTTAAAGAATATACAGAGCTTACCTGTTTGGATGGAATTTACTATTGTTGTGTATCTTTCTGCATAGGACTGAACCTGCAATTAGCAATCTGGTCATTTTAAACTGCATCACTGTTGTAATCAACACCTCAGGCCATTTTGTTTTAATTGAATGAGTGTTTCTGCAACAGCTATACAGAATCAGATCCAGTGAAAATAGCCGTGGACGGTGTAGAAACATTTAAGAAGGAAAATTGTGATCTAATAATTGTGGATACCAGTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACGGTATGTTCTACTGTGATCTATATTTTCCCTTTAATTAGATCCTCATCTTATTGTTTTCCGCAGAAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCG-CCAAGGACATGATGGGTATGTTTG</genome_strand>
        <mrna_strand>AATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAG.............................................................................................................................................................................GGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACAGAATCAGATCCAGTGAAAATAGCCGTGGACGGTGTAGAAACATTTAAGAAGGAAAATTGTGATCTAATAATTGTGGATACCAGTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACG...............................................................AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCCAAGGACATGATGGGTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582687" ref_strand="+" ref_description="SGN-U582687 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|1711509|sp|P49971|SR541_SOLLC (e_value=1e-103) RecName:; (*ATH) AT1G48900.2 (e_value=8e-93) |; (*SWP) sp|P49971|SR541_SOLLC (e_value=6e-105) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum; ">
      <seq>aatcgattggcattcacaaacattgaagttccttcataatcctgttgatttcgttaatcgatctccgtcaagatggtgttagcacaattaggggggagcatctcgcgtgctctccagcagatgagcaatgccacaatcatcgatgaaaaggtcctcaacgagtgcctcaatgagatcacccgtgctcttctacaggccgatgttcaatttaagctagttcgtgatatgtcaacaaatatcaagaagattgtcaatcttgaagatcttgccgctggacacaacaagcgtaggattattcaacaggctgtgtataatgagctctgcaagatattggatcctgggaaacctgcatttacacttaaaaaagggaaacctagtgttgtaatgtttgttggtttgcaagggtctggaaaaactacaacgtgtacaaaatatgcttaccaccaccagaaaaggggttggaagccggctctagtctgtgcagataccttcagagctggtgctttcgatcaattgaagcagaatgctacaaaagctaaaattcctttttatggaagctatacagaatcagatccagtgaaaatagccgtggacggtgtagaaacatttaanaangnaaaattgtgatctaataattgtggataccagtgggcgccacaaacaagaancagctctttttgaanaaatgcgannntttctgancaacgaaaccnnanctcgtgattttnntatggatagtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56835" stop="59537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57135" g_stop="57437" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57438" i_stop="58024" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58025" g_stop="58124" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="403" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58125" i_stop="58297" i_length="173">
            <donor d_prob="0.542" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58298" g_stop="58451" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="557" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58452" i_stop="59104" i_length="653">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59105" g_stop="59255" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="707" r_length="150" r_score="0.921"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59319" g_stop="59355" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="743" r_length="36" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U582687" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57135" e_stop="57437"/>
          <exon e_start="58025" e_stop="58124"/>
          <exon e_start="58298" e_stop="58451"/>
          <exon e_start="59105" e_stop="59255"/>
          <exon e_start="59319" e_stop="59355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAGGTTTGTATTCTTTTCGCCGGAAATTTTACCTCGTTATGTTGATATGCATGTAAAGATTATCTTAGATGAACTGTTGAGAATTTGATATACACAGAGTAATGCCTAAAAGAGGCTGAAAGATTTTCAGGGACATATTTGTAGGCGTCTATATCAATTTCTTTGCAGGTTGGAGGGGAACTGTTCCCTTTTTCTTTCAGTATCTAGTAATTTAGATAAACAATGGAGACATCTTTTTACCGCTCAATACGTCTCTTAAGTGGTGAGACTGGTACACAAGCCTCCTCCAATGTTGTTAGCTTACGGAGCTGGGAAGGCATCAAAAGCTCCAATTTTGTTAGCTTATGGTGCTGGAAAGGCATCAAACAAGAAAGGAACACTAGTACTTAATTAAAAAAACCAAGAAAAGAAAGCAACTGAAATTATAGGCCATCTATCATGATATCTCTTCACTTGTTTCTTCCTTCTGGTTTTCTTTTGTGTCCAGTTTGGGTTTCATTGTTTTTTTCTATTTTCTTCATCATTTTATACTTATGTTTTCCGCACTATCTTCTTGTATTGACTTGAGATAGTTTCTTTCATTTGTGTAGGCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAGGTGTGTTAATTTATTTTTCTACCTTAGGGTATGTTCTGTAACAAGTTTATATGTGAGCTAGCATTAACTATCTGAGCAGTAAGCATTATTTGGCGCAATTATTATAATGCACACCAAGAGCTTTTCCTCTTCAATTACTAGATGGTATCCTTATGTCTTGTAATTTCACACAGGGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAGGCATATCCTATTCTTAATCTATTATTGTTTTTGATATTTGATTATTATTGTTATCTCCACACATTTAGATGCTTGATGCTCATCATACTATCTGATGAGGGTCTATATTCTTCCGTTCTTCTTCCTGACAGAAGAAGCCGAAACTCATCATTTGTGTTTGTTTAATCCAATCAATATACAATGTCATAGGTCCATAAGCATTGATAAATTTGAAGTGCATTTAGATAAGGGAAGTGGAGAATGAAATCTAAAAAACATTGCATGGTGTATGAAAAAGTGAATGGTTCTTTGCTAAGAAATGTCTCAAGATTAAGTTGATTAGCTGCCTGCTGCCTAAAAGTCATCATCTGCACTATCAGTAAAAGCCAATCTGTTAGAGTAATTAAGCTTTCTCAGTGTTTTCCTTTAAAATTCTTTTGAGCCAATTTTTCATCCAAACGGGAAAAGGAAGAAAAGAAAGAGAGCTATTCTTGTTGCTGCTAGGTTAAAGAATATACAGAGCTTACCTGTTTGGATGGAATTTACTATTGTTGTGTATCTTTCTGCATAGGACTGAACCTGCAATTAGCAATCTGGTCATTTTAAACTGCATCACTGTTGTAATCAACACCTCAGGCCATTTTGTTTTAATTGAATGAGTGTTTCTGCAACAGCTATACAGAATCAGATCCAGTGAAAATAGCCGTGGACGGTGTAGAAACATTTAAGAA-GGAAAATTGTGATCTAATAATTGTGGATACCAGTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACGGTATGTTCTACTGTGATCTATATTTTCCCTTTAATTAGATCCTCATCTTATTGTTTTCCGCAGAAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTA</genome_strand>
        <mrna_strand>AATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAG.............................................................................................................................................................................GGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACAGAATCAGATCCAGTGAAAATAGCCGTGGACGGTGTAGAAACATTTAANAANGNAAAATTGTGATCTAATAATTGTGGATACCAGTGGGCGCCACAAACAAGAANCAGCTCTTTTTGAANAAATGCGA-NNNTTTCTG-ANCAACG...............................................................AAACCNNANCTCGTGA-TTTTNNTATGGATAGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562924" ref_strand="+" ref_description="SGN-U562924 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157356511|emb|CAO62698.1| (e_value=1e-85) unnamed; (*ATH) AT3G15920.1 (e_value=1e-63) | Symbol: None | phox (PX) domain-containing protein, weak similarity to myosin heavy chain (Rana catesbeiana) GI:4249699; contains Pfam profile PF00787: PX domain | chr3:5383608-5386961 REVERSE | Aliases: MVC8.4; ">
      <seq>cagtaccttgccacaaaggtcaaagatttggaaattgagcttgattccctaaaacagagtggccaagagaacctgcagcaagcagttctaactgagaaggaaaaatttactgaaatgcaatgggatatggaggaacttacaagaaagtgcgtggagatggaattgaagctggcggctgaacaggctgacaagattcggatggaatcaactcaaagaatcatagtacaagagaatgaaagactgtaccaagaattggatgctgctcaacagcagaacaatagcttgcagaaactccatttggagttggagtcgaagtccaacacagatgtcaaacttttagtcaaggaggttaaatctctacgaagttcccacacagaactcaagcaagagctcagcaacttggcaaaagagaaggcagaagttgaaatgattttacgggaggaaaggcaaactagggaacatgctaccgctgcaaatattaagctgctgcatgagtatgaaattcttcgcagtagactggaggaacgcagcgtcagttttctcatcgaggaagaaaataaactggttctgaatgcttctatcccttcggatgccattgatatgctgtcaacatctgatgatcgaataggtctacttcttgcagaggcccacatcctaacacaagatgctgaaactactgttgctggtggaaaccttgatggagaatattcatgcacaacagtggatgaattgaggaaacaactagctgatgtgtatgttgacaatgccaaattgaggaaacagatgaattctgtcattcgttatgcactacaaacagctagtaggtcaaaggacaatgaggaagagaacccttctacaaagacagctcttacgaagtctttagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80821" stop="64636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67014" g_stop="66831" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66830" i_stop="66745" i_length="86">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.107" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66744" g_stop="66502" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="426" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66501" i_stop="66280" i_length="222">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66279" g_stop="66061" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="645" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66060" i_stop="65178" i_length="883">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65177" g_stop="64936" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="887" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U562924" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67014" e_stop="66831"/>
          <exon e_start="66744" e_stop="66502"/>
          <exon e_start="66279" e_stop="66061"/>
          <exon e_start="65177" e_stop="64936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTGGACTTACACAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAGGTCTACTGTCACTCTCTTGTATTACAAAATGTGATATTTCTTCTATATTTCGGACAGTGAGCAAGTTCTTACTGAAAATTGTTAAGGCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTTTACGAAGTTCCCACTCAGAACTCAAGCAGGAGCTCAGCAACTTGGCTAAATAGAAGGCAGAAGTTGAAGTAATCATTCACTTCATTGTTTTTTATTAATGCATAGTCATTCTTTAAATGGATACTTGTTAGTGCAGTGGATATGCAATTGATCTCTTGTATTTAGGGTTAAACCAAGGATATATTGTGCTTTTCATTTTCTTGTCCCTGGGGAAGGGTGGGGTTGTAAATTTTTCTCCGTAGGTCTGTCCTTCAATAAACTGTGAAAATAATGATGTTCCTTTCTTTCAGATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAGGTGTGTCTTTACTTTTTGTGCTTTCATTTGGGCTGTTCTTGGCTGTGCTTTTCCTAAATGCTCTTGAATTACACGTGGTTTTCTCTAACAGAAAAACTACATACAATTTATGTTCTACTCAGATGCTTGAGATCCGTGTTTTTTCTTAAGATCAAGTTTCCAGTCTTCTGTACAACATCCAAAAGGAAATAAATAGATATACCAAACATTTTAGCGAAAGGGAAAAAATGGGAAGAATATGAAGAAACCAATATCCTGCCCTAAAGAGTATTGGTTTAACAATTGGATGAGATTATAAACATTTCTTTAGCATCTTATGTGGACTCTGATTACCAGAGGAGAACGCTTTGATTATACTGAGGTATTACTGTCTTTATTGTTCTGTTCTTGGTGCTTGGGAATCAAGAACATAAGTAGATAAAAGGTTGGGGAAAAAAATAGAGAGTTCTACCAACTGGGAACGAAGAAGTAAAAAACAAGGAGAGCGCTATCACCTTTCTGACTTGCCAATTTCCTTCATGTGTTGCTTAGCAATTATATCTGTTGCTAAGCAGATAAAGGAACAACAAGGAACCCAGCTTTTAATTACTGGGTTACAAGGACAAGATAATATCATAGTATTATACCATATGCTAGTGTGATTTACTAGATCTAACTTAGACGTAGCAACCTACCAAATTAGTAACTTGATTGTTTGATATCCAGCCCTACATGAATTAGTATGGCTATACATTTGTTGCAATGTTGTGTGTTTCAGATCTTGTTATTTTTTGCCGTTATAAATTCTGTTGATTGGCTGAGTCATTATGATGAGGAAGGAAAAACTTGCATGAACATGCTCAAATCTCTCTCATTCCTCTTTCTTCCTTGATGTCTTAAACAGGCCCAGATCCTAGCACAAGATGTTGAAACTACTGTTGCTGGTGGAAATCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGG</genome_strand>
        <mrna_strand>CAGTACCTTGC-CACAAAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTACAAGAAAGTGCGTGGAGATGGAATTGAAGCTGGCGGCTGAACAG......................................................................................GCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTCTACGAAGTTCCCACACAGAACTCAAGCAAGAGCTCAGCAACTTGGCAAAAGAGAAGGCAGAAGTTGAA..............................................................................................................................................................................................................................ATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAACGCAGCGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACATCCTAACACAAGATGCTGAAACTACTGTTGCTGGTGGAAACCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="68515" stop="69342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68815" g_stop="69051" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68815" e_stop="69051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT-AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA--TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77199" stop="78026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77499" g_stop="77735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77499" e_stop="77735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT-AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA--TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563514" ref_strand="+" ref_description="SGN-U563514 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157356511|emb|CAO62698.1| (e_value=2e-39) unnamed; (*ATH) AT4G32160.1 (e_value=3e-39) | Symbol: None | phox (PX) domain-containing protein, contains Pfam profile PF00787: PX domain | chr4:15528811-15533106 FORWARD | Aliases: F10N7.30, F10N7_30; ">
      <seq>aggtagtaggtacggttcatcgacagaatcaggaccgttagttcgccagttgaagttagaaaattaacacgacgagaggccgtgacggaccggcgagagagctgccggagcagacagtaaggtttgaaatgtacaaatataaaatggaccctttgttacctgagatgaacctctacggtaattactcatatctggattcgggatttaacgatccctctttcatcgaatccctttcgctttctcacacttcgtcaatcgtcaacgatgatttgctaccggagatgatttcttcatcggctgacaaagctagcaaaggtcgaaagagtccaccaaagcaccggcaagacgggacctcgccgcttcctttagggatggattggagtccttcccctcgcgtatgggatggacatgataccatttggccacatgattctcatacaggatggatttactgtgccactattccttcttggactatctctttacgccccagaggttcagctactgtagtgttttatagggttcaaattggtttacgatcacctgatgggttcacaaccacgcgagagatactacgaagatttagtgatttcttaaagctatcttcaaagctgaagaaagaatttccaaagaaaaagttgccccctgctccttcaaaggaacttctgagaatgcaaagccatgaacttttggaagaacgtaggcgtttattgnaggattggatgatgaaagtattgtcngacatcnagttatcnnnaanngnnncc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="83637" stop="81071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83337" g_stop="82937" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82936" i_stop="82382" i_length="555">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82381" g_stop="82271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="512" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82270" i_stop="81948" i_length="323">
            <donor d_prob="0.162" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81947" g_stop="81849" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="611" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81848" i_stop="81682" i_length="167">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81681" g_stop="81595" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="698" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81594" i_stop="81427" i_length="168">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81426" g_stop="81358" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="767" r_length="69" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U563514" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83337" e_stop="82937"/>
          <exon e_start="82381" e_stop="82271"/>
          <exon e_start="81947" e_stop="81849"/>
          <exon e_start="81681" e_stop="81595"/>
          <exon e_start="81426" e_stop="81358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAGTAGGTACGGTTCATCGACAGAATCAGGACCGTTAGTTCGCCAGTTGAAGTTAGAAAATTAACACGACGAGAGGCCGTGACGGACCGGCGAGAGAGCTGCCGGAGCAGACAGTAAGGTTTGAAATGTACAAATATAAAATGGACCCTTTGTTACCTGAGATGAACCTCTACGGTAATTACTCATATCTGGATTCGGGATTTAACGATCCCTCTTTCATCGAATCCCTTTCGCTTTCTCACACTTCGTCAATCGTCAACGATGATTTGCTACCGGAGATGATTTCTTCATCGGCTGACAAAGCTAGCAAAGGTCGAAAGAGTCCACCAAAGCACCGGCACGACGGGACCTCGCCGCTTCCTTTAGGGATGGATTGGAGTCCTTCCCCTCGCGTATGGGTAAAAATAGTCATTTGACAGCTGTGTTTTTTCAATTGTTACTTACTTTGTGACTGAATTCATTTTCTTTGTGCTATTTGATGATTAAATAGTACTCAATCAGTATCAGTCAGTTTGAATTATACCAATATTCATGTATATAAATGATAATGATGCATCACCGTTTGTAGCACACTTGAAAAATTATAGATTATGTTTGTGTGCATACACGGGTTTATGTTGTCATCATATACTATGTAGCTGTTACTTGACTGATAACATGGACATTTCACTTTATCTTGATTAGCAGTACCAATCTAAATCCTGGTTTTCGAAACAGTAGTTCAATGCTAAAATCTTACGGAAACCTGGACAAACTATTTTTAGTTTGATCTGTTATATTTGAAGATTCTATTGGCAGTTTAATCTGATTTGCAGTATGTCTAATCTGTTACTAATACATATGGGTCCATGATTAGTCGTGAAGAAAAGCTTGAAGAGATTATCTAGACTTTAATCTTTTGTTACAAGATCTTCCAGTGCATGTTCAGATGAGCTCTCCCTTATTTTACACAGGATGGACATGATACCATTTGGCCACATGATTCTCATACAGGATGGATTTACTGTGCCACTATTCCTTCTTGGACTATCTCTTTACGCCCCAGAGGTTCAGCTACTGTAGTGGTATTTCCCTGTGAATTTTTGAGTCAGGATCCTTTAATGCATTGAGCACAGTAAAAGGAATAAGCTATATTTAACAATACCAATTTTTATTTTTATTTTTAAAAAAGGAAAAAGCTATATTCGCGTTGAAATGGGCTGTTATTTCCAACCATGATTGAAGTTTCCCTTTACAATCTTTAGGTGTTTTTTCCTCCTTTTTAATGGTGAGCTGTACCTGGTCCAGTGGAGATTACTATAGTCTATTTTCTTTCAGGAACAAAAAGAAGCTAACTTGGATGACTTGTTATTTCTTGCTTGAGTTATTGACATTCGTACTGGAACAGTTTTATAGGGTTCAAATTGGTTTACGATCACCTGATGGGTTCACAACCACGCGAGAGATACTACGAAGATTTAGTGATTTCTTAAAGCTATCTTCAAAGGTAAGCTAGTTTCTTTGAGATCATGCATAGGCCATATTGTAACAAGTAGGGCAATATTTCTTCTATGGATTCAGTAAACTGATCGGTTCTTGGACTGAATCTTCATACGTACAATGTATGGTATAAGTTGATCCATATGATAACTTCACACCTTTCGTTTGTTGCAGCTGAAGAAAGAATTTCCAAAGAAAAAGTTGCCCCCTGCTCCTTCAAAGGAACTTCTGAGAATGCAAAGCCATGAACTTTTGGAAGAAGTTAGTAGGCATTCTATTTCTATTGTTTTCTTTTATTTCAATTATAATTGCATGATGGCATCATAACCTGAAATTTTTAATTGAGGAATGCACTGGTATAATAGGTCTGTGATAGTTCTTTACTATGAACTTGATCTTTGCTATGTGCTCAAGTTGATTTCATCTCAGCGTAGGTGTTTATTGGAGGATTGGATGATGAAAGTATTGTCTGACATCGAGTTATCAAGAAGTGCCTCC</genome_strand>
        <mrna_strand>AGGTAGTAGGTACGGTTCATCGACAGAATCAGGACCGTTAGTTCGCCAGTTGAAGTTAGAAAATTAACACGACGAGAGGCCGTGACGGACCGGCGAGAGAGCTGCCGGAGCAGACAGTAAGGTTTGAAATGTACAAATATAAAATGGACCCTTTGTTACCTGAGATGAACCTCTACGGTAATTACTCATATCTGGATTCGGGATTTAACGATCCCTCTTTCATCGAATCCCTTTCGCTTTCTCACACTTCGTCAATCGTCAACGATGATTTGCTACCGGAGATGATTTCTTCATCGGCTGACAAAGCTAGCAAAGGTCGAAAGAGTCCACCAAAGCACCGGCAAGACGGGACCTCGCCGCTTCCTTTAGGGATGGATTGGAGTCCTTCCCCTCGCGTATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACATGATACCATTTGGCCACATGATTCTCATACAGGATGGATTTACTGTGCCACTATTCCTTCTTGGACTATCTCTTTACGCCCCAGAGGTTCAGCTACTGTAGTG...................................................................................................................................................................................................................................................................................................................................TTTTATAGGGTTCAAATTGGTTTACGATCACCTGATGGGTTCACAACCACGCGAGAGATACTACGAAGATTTAGTGATTTCTTAAAGCTATCTTCAAAG.......................................................................................................................................................................CTGAAGAAAGAATTTCCAAAGAAAAAGTTGCCCCCTGCTCCTTCAAAGGAACTTCTGAGAATGCAAAGCCATGAACTTTTGGAAGAA........................................................................................................................................................................CGTAGGCGTTTATTGNAGGATTGGATGATGAAAGTATTGTCNGACATCNAGTTATCNNNAANNGNNNCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585939" ref_strand="+" ref_description="SGN-U585939 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|18394307|ref|NP_563986.1| (e_value=2e-175) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G15980.1 (e_value=1e-177) | Symbol: None | expressed protein | chr1:5489292-5491303 FORWARD | Aliases: T24D18.8, T24D18_8; ">
      <seq>cttctgctatagtttttagctatccccaaaaaaagttgcagaattttatgataacactcaaatggctgcctctactactctactatctaactccatttctcctttctttgctaatccacctaattttcctgtaacccatgtcacaaatgtacctttcttgaaccacaatccatcttttcccgccagaaaatcagggaatttttgcctcaatgccaagaaaaaaaatccatggcttgacccttttgactatggtgatgatcctgaaatggaatatggttcacttttttctgaagggaaacaagatgaagatccaaggccacctgataatcctgataacccatatggatttctcaaattcccaatgggatactctgttgagattgcttcgttgggtttgaaaattagaggtgatgttcggagatgttgttgtgttattgatggtggggtttatgagaatttgctgttctttccagtaattcagatgattaaggataggtaccctggtgttcaagtggatatacttgcaacagccaggggaaaacagacatttgagatgaataaaaatgtgaggtgggctaatgcctatgatctggatgatgattttcctgaaccagctgagtatacggatatgcttggaattcttaagagtaggtactatgatatgatcttgtcaaccaaactggcagggattggacatgcagtatttttgtttatgtcgactgctcgtgacagagttagctacatttacccaaatgtgaattctgcaggagcaggattgtttctgtcagaaacttttacaccagaaagcatgaacctctccgagggcggatatcatatgtaccgtcagatggttgattggttgggcagaccagctcgtaaagtacctcgacaacctttacccccacttaaagtttcaatctcaagaaaggttagggaggttgtagaggcaaaatataagaatgttggtgcacagaaaggcaaatatattgtgattcatgggattaaatcagattcaaaagcttctatgcagtcaaggggtgatattgatagcttgctccctattgagatttgggctgagatagcagaggagataaggggagtcaagccagtttttgtcattccacacgaaaaagaaagagaaaatgtggaagatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgctcttgttgatgactctgctggagtgatagctacaaatacagctgcgatacaacttgctcacgcacgtggaaaaccaagtattgggctattctgctctgaggataaggccagaagttttgttcccaatgcagaagcaaagaaatgtgcaactatttcatcaaatactggaaaattggttgatattgatgttgaagctgtgaagagtgctgttcaaattttcaccatgcccctagcaatcttctaaatattatacatcctccagttctcttacatatagtaattaagtattcctgtaattgttactagttccattttcttctcaattgtaattaatagaagcggaaatatatatattcgttcttttttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103334" stop="100055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103034" g_stop="102389" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101927" g_stop="101737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="837" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101736" i_stop="101599" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101598" g_stop="101341" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1095" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101340" i_stop="101188" i_length="153">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101187" g_stop="101082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1201" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100827" g_stop="100742" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1202" r_stop="1287" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100645" g_stop="100353" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1288" r_stop="1580" r_length="293" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U585939" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103034" e_stop="102389"/>
          <exon e_start="101927" e_stop="101737"/>
          <exon e_start="101598" e_stop="101341"/>
          <exon e_start="101187" e_stop="101082"/>
          <exon e_start="100827" e_stop="100742"/>
          <exon e_start="100645" e_stop="100353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGCTATAGTTTTTAGCTATCCCCAAAAAAAGTTGCAGAATTTTATGATAACACTCAAATGGCTGCCTCTACTACTCTACTATCTAACTCCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATATGTAAGTAGATGTTCCAACTGATAACTTGATCTTTTTGACTACTGAATATTCATTTCAAAATAGGGAGTTTGAAAAGTGCAACAGTTGTACTTCGTCAAAGTTTGTATAAACATGTTTACATACACTTTTTTGAAATAGGTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAGGTATAATGTCAGTATTTTATTCTCTGTCGGAAAAAGGGCCGACTCGACTACATGGTCATTTTTAGTTCTCGAATTAGCTGATTAGCCTTTTTTCATCAAATGCAAGAAAATTTGTGAGCTATACTAATGGTTTGTAAACTATCATTTGATCAGGGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAGGTAATGTCATCTACTACAAGCTGTAGACGCGGAAATTTTTTGCACCTTCTGCTGTCTTTGTGGGGAGGTTGATATATCTTGGTTTTGTCTGTACAGTATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAA</genome_strand>
        <mrna_strand>CTTCTGCTATAGTTTTTAGCTATCCCCAAAAAAAGTTGCAGAATTTTATGATAACACTCAAATGGCTGCCTCTACTACTCTACTATCTAACTCCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT..........................................................................................................................................GTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAG.........................................................................................................................................................GGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG................................................................................................TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595248" ref_strand="+" ref_description="SGN-U595248 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355602|emb|CAO49411.1| (e_value=7e-13) unnamed; (*ATH) AT1G15980.1 (e_value=5e-14) | Symbol: None | expressed protein | chr1:5489292-5491303 FORWARD | Aliases: T24D18.8, T24D18_8; ">
      <seq>taccctggtgttcagtggnatatacttgcaacagccaggggnaaaacagacatttgagatgaataaaaatgtgaggtgggctaatgcctatgatctggatgatgattttcctgaaccagctgagtatacggatatgcttggaattcttaaggtttcatgccgttacattaacattaacatcgattcataattatttaaattctacgttgcttggactcttcaaaaatgttgattttaaagtgcattacttttggaagtatccgacacacatcaatctacgagcaacataggtttaagcaagttgtttcatttgaagtatgattcttgtcgtgccttgatgtattagcacctaaaattagagaaagtaacaaacattatatggaaacttagttaaatacgaagatttaactatggttatcttatgagtttgcagataattcaaaagttgagcagactacgtttggaaaaagaatcgcttagattagcttcaagatgctgttcgtcttgtttagtcagatagagataaaagaatttgcttcctgcattatgaatagagagttatagtcattttttgggctaagttatttgctttaatgcatggtttgttgcagagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102838" stop="101623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102538" g_stop="101923" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U595248" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102538" e_stop="101923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGG-AAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAG</genome_strand>
        <mrna_strand>TACCCTGGTGTTCAGTGGNATATACTTGCAACAGCCAGGGGNAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTACATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATCAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCA-TTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575733" ref_strand="+" ref_description="SGN-U575733 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157343189|emb|CAO66678.1| (e_value=4e-101) unnamed; (*ATH) AT5G57970.1 (e_value=2e-86)  Symbol: None | methyladenine glycosylase family protein, similar to SP:P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosyl... ; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=1e-38) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus GN=guaA; ">
      <seq>gcccagatcggacagtcaccattttctcaataaattcttctcgccgataatgtatctgctctctcactccttagggttttaattctctactttccggtccatacaattacaatgcaccttctttttcccttcactgtcttgctcttcaaccctagctaagcacagttgaagaaaattcatgctaagttcaacgaatttctagttactaggagttgtaattgtttcaatgtctggaggacctagggttaaattgatgaacaatgctgattctgaagtccgatcagtgctcgggccggcgggtaacaaggctagatccgttgaattacgaaagcccgttgaaaagcctgttaagaaggctgctgaaagtgaagagtctaagggtaagaaatttgagggaacggattccgtgccgcaatcacgggcgaggaaatgtggaggagctgtgccgtctattttgagacagcaacaggaccataggtcattgatgatgaggcctaatttgtcgctgaatgcatcttgttcgtcggatgcttcgacggattcttctcatagccgagcatcgacgacagggaaaatgagccgtggtagtgtgacgccgacggctggaagaaggaagcaatgtagtagtccgaaagtggtgaagtctgagaaaattggaaaaactgttggcgaaggtgagagcttggcttcaagtcccactccggatgatgcttcggtgatgaagaaaaggtgtgcttgggtgaccccaaatactgatccatcctatgctgcttttcatgacgaggaatggggagtttcagtccacgatgacaagaagctctttgaacttctcagtttatgcactgcattagctgaactctcatggccggcaattctcagtaaaagacatatgtttagagaagtctttcaaaattttgacccagttgcagtctcaaaactaaatgagaagaagatagcaccaccaggaagtcctgccagcactcttttatcagaggtaaagctacgggcagttattgaaaatgcacgccaaacgtgtaagatcatcgatgaacttggatccttcgacaaatacatatggggttttgtgaataacaaacctatagttagtcaattccgatatgcaaggcaggtgccaatgaagacatcgaaagctgaagggataagtaaagacctagttaaaagaggattcagaggagttggacctactgttgtgtactcattcatgcaagtagctggtatcacaaacgaccatctcatcagttgcttcagatttcatgattgtgtagctgcaaccgatggaacggataaagatgatggccttgcagccaagacagaagtgaagcaactacaactcaaggatgaaactgagatgggtcttataagagctattgacgacttcaatttatcgacatagtgaaatgtgttcagagtagtagttcaatgtaatttatactcctagtagatttggtagctttgcgcccttggttgcgatacagttgaaagggcggcaagtgcttgtgtacaaatgaccttgcttattattattttaccattgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105683" stop="112935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105982" g_stop="106736" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106737" i_stop="110704" i_length="3968">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110705" g_stop="110762" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="813" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110763" i_stop="110855" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110856" g_stop="110939" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="897" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110940" i_stop="111049" i_length="110">
            <donor d_prob="0.715" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111050" g_stop="111191" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="1039" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111192" i_stop="112115" i_length="924">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112116" g_stop="112635" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1559" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-U575733" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105982" e_stop="106736"/>
          <exon e_start="110705" e_stop="110762"/>
          <exon e_start="110856" e_stop="110939"/>
          <exon e_start="111050" e_stop="111191"/>
          <exon e_start="112116" e_stop="112635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGAAAAGCCTGTTAAGAAGGCTGCTGAAAGTGAAGAGTCTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCAATCACGGGCGAGGAAATGTGGAGGAGCTGTGCCGTCTATTTTGAGACAGCAACAGGACCATAGGTCATTGATGATGAGGCCTAATTTGTCGCTGAATGCATCTTGTTCGTCGGATGCTTCGACGGATTCTTCTCATAGCCGAGCATCGACGACAGGGAAAATGAGCCGTGGTAGTGTGACGCCGACGGCTGGAAGAAGGAAGCAATGTAGTAGTCCGAAAGTGGTGAAGTCTGAGAAAATTGGAAAAACTGTTGGCGAAGGTGAGAGCTTGGCTTCAAGTCCCACTCCGGATGATGCTTCGGTGATGAAGAAAAGGTGTGCTTGGGTGACCCCAAATACTGGTATGTTTAATTCTGTAATGTTGCATTTCATTTGTTGTATATGTACAGTTACTGTGTTTTGATAAGGCAAAGGCGTTGTTAAATTTGTTACATAACTGTGGGGATTGGTTCATTTGTTGGTCCTTCTAGTTAATCCACTAGCAGTGGAGAAAAATTGGGATATGTAGGTCTTTGCTAGAATACCAATATGTCAAAATGTAGGTAGGACTTCGATTTCCCAGTTCATTAGGGCAACAAACGGTGGACTGAGCTAGTTCTGCATTCAGCTGAGTTAGGGGGAATGATTCCAGTTCCTAGTATTAGCTAACTGGTTGGTTTCATTTTGAAAATCCTTGTCTCCAAGCTGTCATCATTCAGGCCTGCCACCATCTGATATATACTGCTGGGCTGTGTTGGATACGAGCTTGATTGCTTGTCCATCTTTGCTATATGAAACAATGTTCCGTGTTGTTGGCATGCACACACACACACACACATATATTTCCCTCGACTAATCTAGTATTAATGCTATTAATTTTGATTGTGAACTACTTCGTGGTTAATAATTGGAGATCATTTTTTGGGGATAAACTTTTTCTTCTTTGGTTAAGTTGTAATGGACGTCTATTCCATTAAGCTGATTTTAATGTGAGTTGAATCCCTAATTATATGTCATTCCTATCTCTTGTAATGGATAAGTTTTTTATAGGTTCACTAGTCTAATGGTTGGTTTAAGGTATGAGCAATCTGGTTACTAATTGACAGTTTAGTGGGGTAAATCCCCACAAGTCAACCCAAACACCATTGTCATTCCATGTACTAGCAAAATGTAAAAAGTAGAGAACCTACAAAAAAATATGGTTCTCTATGAAACTCTCAATCTTCTATACAAATAGGGTTATCATGGATGCACTAAAGAGAAACTAGAGATTACAGATTTGCTAATTGACGTTCACATTCTTTCCTCTTCTTCCATGCTCAAGTTAATCTGAGAAAATATGCTCATCTTTGACAGTTCATACTAAGAATTTGTAATTTACCATCCTTTTCCTTGTATTTCTGAACTTGGTATTTGATTGCATTCCCTTTTTCAACTTTCTCTTTTTTCTTGAGTTCATGAAGTTAGAATTTGATTCCATTCGCGGTGTTGCTTGAGGGAATGAAGAAAAGCTACTTGACCTAGTATGGGAAAAGGTGAAATCAATTTGAAATTAATAGCATACTGTTCAGGCCCTCAAGAAGTCACTTAAGTTTCAATTTGTTTGATGAAATATATGAGGATGCGTGGTGAAATAGTGTTTTTGTGTGATGAACAGACAATGTGGAAAATGGTGAAATAGAGGGGATTTTCTCCTTCATCAATTGGAAGGTCATCGGCATTTGTACATGTCATTATCTAAGATGCCATATATGCCTAATGAGAGTGTCTGAACTGTAAACTTGATTTCCTTAGGCATTAAAAGAGTTTCCTCTGGTAAAGATCAAGCTGTCAATCAGTTTGTAGCCATGATATAACATGCATGCATGCTTCTTTAAGTACCCCCACATGGCTCATCGTGTCATACCAGTCTTTACTTGAACTGACCACTGGCTTCATGAATTTCTTTTGAACTGATTAGTGGTGAGTTTGCTAGGTCTGATGTGTGTCTTTTGCAATTTTTTTTGAAAAAACTGGTAACTATGTTTCCTCAGCATTAAGGGTATGCTGTCCACCTCTAACAGCTTACATTTACTGGAAGTAATCACAGAAGTCCTAGAAAGCGCACTAACTAAACATCCTCTTCTATATATTGCTCTTTACATAAAATAATATAAAGTAGTGATAACCTCCACTTGATCTTATTTCTAATCATTACATAGACTAGCTAGCAGCTGGCTGGAGGACAGGTATGAACACATTGCTGGTTTTGTGAGGTTCTATGGAAATGTTTGAGGAGAATTCACCTTTCCTGTGATGTATTCGGGGAAAGTGTAAACCCTGGGAAACGCATTATTGATCCATGCACGTTAAGCACTTTGACCATTTGGTTTTAGATCTCATATTCTTCTTTTATGGACTTTGCACATATTTTATGTCTCAGACCCAAATAAAGAAAAAGGGATGTAATAGGTTGAAGATCCGTCTACATGAATCATTATAGTACTGAATATGCTTTTTAAGTCCAATATTTTCTTTGAGGCATTTGAGTCTGTTTAGAATTATATATGAGCACGAAAAGAAAGAACTTTTGATGTTAAAGAATCTCAATTTATTGAGTAATTAAATGAAATGGGTCAAGATCAAAGAAGATAATAGATGTGATGAAATGAATCTACACTAATGTGTTATTTCAAAGAAGATAATAGATGTGATGAAATGAATCTACACTAATGTGTTTTCAAAGAAGATAATAGATGCGATGAAATGAATCTACACTAATGTGTTATTTATTTCTCTTATTTAACCTTATTAGTATGTGTATTGTGTTTTTATGATAAATATTTGTAGAGATGGTTGCATAATTTTTATATTCGCAACCTTCTATTGAAACACATAACCTGCACCCATTTAACGTTCGTTTCCCTTCGCTTATTTTTTATTCCTCTTTATCTTCTGTTTTGTTAAAACATGGTCAGTGGAGTGATGGAATCATATGCTTGACATTTGGAGATTAAGGTTATTGATTATGCATGGCCTTTTAGAAATTCCAGTCTGTCCTGCTCATGTTGCTCAGACTTTTCAGAAATGTCATGGGGTGCATGTCGGATCCTTCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCGACAATATTTTTTGGAGAGTCCAAACAACTTGCCGCTCTAATACATAACTATTTCCAAGTATTATGGAGCCATTATTGGAGATGCACTCTCTATATCAGTGTTTGTGGCATTCTTACCTACTTTCTGGCCCCTATGTTAAGAATGAGAATTTGCCACTTCTCCCGTGGTTTTTGAGTCTAGGACTTGTTATGAGATGAACACGTTGTTTCTAAACCTTGTTATTAGGGGTTCTCTTTTGATCAAGTAAGGTAAGCTTTCCTTCGATCATCAAGAGGATACAAGGGGTAGAAAAACTATGTTAGGATCAGGGAAGGGAAATTAAATCCGCTATTAATTGTATTCTGTTAAGGGGAAGAATCATTATAGAATCATCTTATTTCCTTTTGGGCAGGAAAGCTAATGATTATAATCAAGAAAGGTCAAAGTGTTACCGTGTTAAGCATCATTCCTAATACTAGAACACTTACATAAGCACCCCCCAAGGGACTTCTGTTGAAGTGGTGGGAGAATCATGAGTTTCAGGTTCGAATTCCCATGGAAATCACTAGTTGACTTCTGTCTAAGCCTTGTGGACAGTGCTATCCAATAATGTCCTGGTGGAAGGAAGTAGGTACCCGGTGGAATAGTCGGAGATGTGCGCAAGTTGGCCTAGACACTATCATTGAAAAAGAAAAAAAGGAATCCTTATATAGAGGATAACTAAATGTGTGTCCACAACTCTATTCTTGTCTAACATGTATAATGTCCTGTAATCTAGCTCTCGAACTCCAGTTTCTAGTCCTACATCATGAAACAAGTTGTACATCTTCCAACAAGGTGATCATGGTGATTTTTCCATGTGTGTAATTGATTCTAAGCACAAACGGATTCATATAGGTTTATTGTTTGTCAGGAGTCCTATTCTGGTAGTATGTGTCCTTGTATGGGTAAGTGTGAGATTAATAGAATCTCTACTTTTGGGGAAACCATAGTTCGAACTAAGCGGGAAAAGGTACAGAAGACTCATTTAGCAAGTCCTAGTAAGTCTGCTACCGGGGGTTTATCCATTGTTTGTAATAGATTCTTTTATTCATCCAGTTTTTGCATTTTCCATCATATTGGTCCATGGTCATCCCTTTTGCAGGATATATTATTGTAATGCTGTAGATAATATGTTCTTATCAGTTCCTCCTGCTAATTGGTTTTGTTTTGCCAAAAGATCCATCCTATGCTGCTTTTCATGACGAGGAATGGGGAGTTTCAGTCCACGATGACAAGTGCGTAATTCCTACTTTATATTTTCTCATTATTTTGCGGCTTTAGGCAATTAAATGTGATGATTTTCTCAGTCTGGTTACTTCTATTTGCAGGAAGCTCTTTGAACTTCTCAGTTTATGCACTGCATTAGCTGAACTCTCATGGCCGGCAATTCTCAGTAAAAGACATATGTTTAGGTACATTACGCTCTGCACCAGTGTTTTGGAGTACCAAACAATGGGTTATCATTTCATATCTGGTTGCCTTTCAAAAGCTGCTGCTTCAATTTGAACTATTTGTTATGCAGAGAAGTCTTTCAAAATTTTGACCCAGTTGCAGTCTCAAAACTAAATGAGAAGAAGATAGCACCACCAGGAAGTCCTGCCAGCACTCTTTTATCAGAGGTAAAGCTACGGGCAGTTATTGAAAATGCACGCCAAACGTGTAAGGTACGTGAAAGTTTTATGTCTTGTTGAGTTGTCCTCGTCTTAAAGAAGAAAATTCTTCTTGTACAGCTAGGAGAAATTATATTGTATTGGTTAGGATAAAATTTTTGAAGCTTTCTTAGTTCTTGGCTCTTGAACCTTCTTCAGATTTTCACAGTCAAAATGTCGGTTCTTAAATATTCCACCAAAATAACTGTCTACCTTACATAAAGTAAAAAAAGGCTCTTGGACCTTTTTTAGGTAATGAAAGAAGATTGCAACGGGAAATTGCTTCTTAACCACAGATTATTTCAAGCTCAAAAGTTTTCGGTTTAATCGGTCGGCATTTAATGTATCAGCTGTCTTGAGCTGAAAGTCTTGCTGTTGTTAAATATGTTGCCCTGGAAACTGATGATTTCTGTACTGGGTGCAAAATTTTCTAAATACTCGGCAGCTGCATATGAGATTTTTTTCAAAAGTCAGAAACTACAGTCTATAGATATGATGTGCTTATGAAATACTTGTGGCTTTAATAGGTATGTCATTCTAGAGAGTAGGCATATTAAATGTAAAAAAGAGCTTCTAGATAAACAAGATTTTTATTAGTATACACCTCATTTCAAATTTAGAAAGTGTATATACCCGCAATTATGGGGGTCAAAATATCTAATAATTTTTTGTAAATTTTGGGTAGGAGTTTTTTACACCTTTTGAAATAGAATCTACATATTCAGAAACTACATTATAGTATTAAATCTTTTTCTTTTTCTTAATTAAAATATGAAAAAAAAATTAGGTTGTCATCAAAGAGAAAGCCATGATTGGCTTCTTAATAGTGTCAAACAGAAGTCCTGAACTGGCTTCTTAATAGTAACTGTCAGTGAGTAGCAATTTTAGGGTTGTTACTTGAGAACCATTTTTGATGTCATGCTCTTGTTATCCTCTCAGATCATCGATGAACTTGGATCCTTCGACAAATACATATGGGGTTTTGTGAATAACAAACCTATAGTTAGTCAATTCCGATATGCAAGGCAGGTGCCAATGAAGACATCGAAAGCTGAAGGGATAAGTAAAGACCTAGTTAAAAGAGGATTCAGAGGAGTTGGACCTACTGTTGTGTACTCATTCATGCAAGTAGCTGGTATCACAAACGACCATCTCATCAGTTGCTTCAGATTTCATGATTGTGTAGCTGCAACCGATGGAACGGATAAAGATGATGGCCTTGCAGCCAAGACAGAAGTGAAGCAACTACAACTCAAGGATGAAACTGAGATGGGTCTTATAAGAGCTATTGACGACTTCAATTTATCGACATAGTGAAATGTGTTCAGAGTAGTAGTTCAATGTAATTTATACTCCTAGTAGATTTGGTAGCTTTGCGCCCTTGGTTGCGATACAGTTGAAAGGGCGGCAAGTGCTTGTGTACAAATGACCTTGCTTATTATTATTTTACCATTGCTGT</genome_strand>
        <mrna_strand>GCCCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGAAAAGCCTGTTAAGAAGGCTGCTGAAAGTGAAGAGTCTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCAATCACGGGCGAGGAAATGTGGAGGAGCTGTGCCGTCTATTTTGAGACAGCAACAGGACCATAGGTCATTGATGATGAGGCCTAATTTGTCGCTGAATGCATCTTGTTCGTCGGATGCTTCGACGGATTCTTCTCATAGCCGAGCATCGACGACAGGGAAAATGAGCCGTGGTAGTGTGACGCCGACGGCTGGAAGAAGGAAGCAATGTAGTAGTCCGAAAGTGGTGAAGTCTGAGAAAATTGGAAAAACTGTTGGCGAAGGTGAGAGCTTGGCTTCAAGTCCCACTCCGGATGATGCTTCGGTGATGAAGAAAAGGTGTGCTTGGGTGACCCCAAATACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCCTATGCTGCTTTTCATGACGAGGAATGGGGAGTTTCAGTCCACGATGACAA.............................................................................................GAAGCTCTTTGAACTTCTCAGTTTATGCACTGCATTAGCTGAACTCTCATGGCCGGCAATTCTCAGTAAAAGACATATGTTTAG..............................................................................................................AGAAGTCTTTCAAAATTTTGACCCAGTTGCAGTCTCAAAACTAAATGAGAAGAAGATAGCACCACCAGGAAGTCCTGCCAGCACTCTTTTATCAGAGGTAAAGCTACGGGCAGTTATTGAAAATGCACGCCAAACGTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGATGAACTTGGATCCTTCGACAAATACATATGGGGTTTTGTGAATAACAAACCTATAGTTAGTCAATTCCGATATGCAAGGCAGGTGCCAATGAAGACATCGAAAGCTGAAGGGATAAGTAAAGACCTAGTTAAAAGAGGATTCAGAGGAGTTGGACCTACTGTTGTGTACTCATTCATGCAAGTAGCTGGTATCACAAACGACCATCTCATCAGTTGCTTCAGATTTCATGATTGTGTAGCTGCAACCGATGGAACGGATAAAGATGATGGCCTTGCAGCCAAGACAGAAGTGAAGCAACTACAACTCAAGGATGAAACTGAGATGGGTCTTATAAGAGCTATTGACGACTTCAATTTATCGACATAGTGAAATGTGTTCAGAGTAGTAGTTCAATGTAATTTATACTCCTAGTAGATTTGGTAGCTTTGCGCCCTTGGTTGCGATACAGTTGAAAGGGCGGCAAGTGCTTGTGTACAAATGACCTTGCTTATTATTATTTTACCATTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566776" ref_strand="+" ref_description="SGN-U566776 Tomato 200607#2 [101 ESTs aligned] (*GB) gi|6472585|dbj|BAA87058.1| (e_value=3e-100) WIZZ [Nicotiana tabacum]; (*ATH) AT1G80840.1 (e_value=8e-64) | Symbol: None | WRKY family transcription factor, similar to WRKY transcription factor GB:BAA87058 GI:6472585 from (Nicotiana tabacum) | chr1:30388584-30390388 FORWARD | Aliases: F23A5.19, F23A5_19; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=8e-63) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40; ">
      <seq>ttttaccagcttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116325" stop="113289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116027" g_stop="115867" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="224" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="593" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="710" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114321" g_stop="113589" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="1443" r_length="733" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U566776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116027" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT</genome_strand>
        <mrna_strand>TTTTACCAGCTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566778" ref_strand="+" ref_description="SGN-U566778 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|192337550|gb|ACF04195.1| (e_value=2e-29) WRKY; (*ATH) AT4G31800.2 (e_value=4e-17)  Symbol: None | similar to WRKY family transcription factor [Arabidopsis thaliana] (TAIR:At2g25000.1); similar to WRKY transcription factor 21 [Larrea tridentata] (GB:AAW30662.1); contains InterPro domain DNA-binding WRKY (InterPro:IPR003657) | chr4:... ; (*SWP) sp|Q9C5T4|WRK18_ARATH (e_value=4e-16) WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18; ">
      <seq>cgggagatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggtactactaattcgtacaacttttagagcataatgaacagtttttacgcttccatagtgtaacgagacggtgtaattttagagcctaataaacaattttacgctctcatagtgtaacagacggtgtatactaaaaagtatgaaatatcccaagtcattttcgattaggaaacaactcaacaagtagaagtaatttaataattaggtaacccaactttcgttgaagttacttagttctagtagttgcagcttccagatattttatgtatttggtggccagaattcacagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115250" stop="113557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114946" g_stop="113857" g_length="1090"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="1096" r_length="1090" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U566778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114946" e_stop="113857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTC</genome_strand>
        <mrna_strand>ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589413" ref_strand="+" ref_description="SGN-U589413 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|192337546|gb|ACF04193.1| (e_value=2e-24) WRKY; (*ATH) AT4G31800.2 (e_value=2e-22)  Symbol: None | similar to WRKY family transcription factor [Arabidopsis thaliana] (TAIR:At2g25000.1); similar to WRKY transcription factor 21 [Larrea tridentata] (GB:AAW30662.1); contains InterPro domain DNA-binding WRKY (InterPro:IPR003657) | chr4:... ; (*SWP) sp|Q9C5T4|WRK18_ARATH (e_value=2e-21) WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18; ">
      <seq>tggaggaagtatgggcagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtaactacctacgaaggcaaacacggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115225" stop="113965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114925" g_stop="114830" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114321" g_stop="114260" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="158" r_length="62" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U589413" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114925" e_stop="114830"/>
          <exon e_start="114321" e_stop="114260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCA</genome_strand>
        <mrna_strand>TGGAGGAAGTATGGGCAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAACTACCTACGAAGGCAAACACGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566779" ref_strand="+" ref_description="SGN-U566779 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|6472585|dbj|BAA87058.1| (e_value=6e-36) WIZZ [Nicotiana tabacum]; (*ATH) AT1G80840.1 (e_value=3e-18) | Symbol: None | WRKY family transcription factor, similar to WRKY transcription factor GB:BAA87058 GI:6472585 from (Nicotiana tabacum) | chr1:30388584-30390388 FORWARD | Aliases: F23A5.19, F23A5_19; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=2e-17) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40; ">
      <seq>agcttccnaacttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagtatgtggaaagcgatataattttttttttgttctcaatataattattttgatgtgatgatttgatttttcgttgcagaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccaaaattacaattcattgaggaaccaattgacggaatatatgagcaagcaaaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcanagagcagctcnnngatgaanattcatctacaaagaaaccaagagaagancacattaaaactaanacttcaagagtttatatgagaactgaaccatctganacttctcttatagtgaaagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116328" stop="114950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116028" g_stop="115726" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="671" r_length="368" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-U566779" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116028" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCAAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>AGCTTCCNAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAAAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAAAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCANAGAGCAGCTC-NNNGATGAANATTCATCTACAAAGAAACCAAGAGAAGANCACATTAAAACTAANACTTCAAGAGTTTATATGAGAACTGAACCATCTGANACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10456" PGL_stop="7866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10456" e_stop="10045"/>
            <exon e_start="9905" e_stop="9768"/>
            <exon e_start="8443" e_stop="7866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.107" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10456" e_stop="10045" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.107" acc_prob="0.955">
            <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9905" e_stop="9768" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="8443" e_stop="7866" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10456" stop="10045"/>
              <exon start="9905" stop="9768"/>
              <exon start="8443" stop="7866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10165" stop="10045"/>
              <exon start="9905" stop="9768"/>
              <exon start="8443" stop="7974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587211" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTTTTCTCCGTTTCCGGCGACAATGAACGGAGACACATTTCATAGTCGGAATAGTTCTTCCTCTACTCTCAGCAAAAGGAATACCACTGAAAGGAAAGTTGACGTTACAGAAATGAAGAAGAAATCGGCATCGGCAACGGGAACGGAGGTTGGTGGTTATGGATGGTGGTTAGGTAATGCGTATTTCATGAAGTGGAGGATGGAGGATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACG : GTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG : GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAATGTAAGCAGCTTTCTTTAGATCCCTTTTTTATTCATTCTCCTA</gDNA_template>
            <first_frame> M  F  F  S  V  S  G  D  N  E  R  R  H  I  S  *  S  E  *  F  F  L  Y  S  Q  Q  K  E  Y  H  *  K  E  S  *  R  Y  R  N  E  E  E  I  G  I  G  N  G  N  G  G  W  W  L  W  M  V  V  R  *  C  V  F  H  E  V  E  D  G  G  C  I  R  C  S  E  V  P  S  N  T  V  Y  L  R  C  F  T  V  V  F  H  G  S  G  I  Y  A  S  Y  D  S  S  F  C  S  A  F  R  S  R  I  Y  C  Y  S  S  S  *  S  I  A  C  C  *  T  R  S  Q  H  S  L  C  W  P  K  H   : G  V  C  G  D  A  N  G  V  H  F  G  D  F  S  N  *  R  T  A  S  S  D  N  I  G  A  V  Y  V  H  I  Q  R  D  S  R  V  C  Y  T  I  A  V  A  G   : G  F  L  G  V  R  G  G  F  P  S  R  E  C  V  V  F  L  V  L  F  R  A  C  C  G  L  G  D  C  F  A  G  Y  E  T  Y  A  E  M  G  N  G  *  S  I  *  R  I  E  C  I  A  S  C  E  V  T  K  H  *  G  P  L  H  Y  *  F  G  C  W  Y  W  R  W  H  F  V  *  F  Y  G  R  K  L  C  G  D  *  D  K  T  I  C  H  *  W  Y  W  C  G  I  L  S  *  A  *  K  R  S  E  I  P  K  C  I  F  R  L  K  C  I  H  S  N  V  *  W  W  I  L  G  R  N  V  K  I  S  L  G  W  S  N  C  R  V  F  I  L  V  H  F  C  S  N  L  G  T  L  *  T  A  T  A  A  S  H  S  P  H  Q  T  H  H  A  F  N  F  N  V  S  S  F  L  *  I  P  F  L  F  I  L  L </first_frame>
            <second_frame>  C  F  S  P  F  P  A  T  M  N  G  D  T  F  H  S  R  N  S  S  S  S  T  L  S  K  R  N  T  T  E  R  K  V  D  V  T  E  M  K  K  K  S  A  S  A  T  G  T  E  V  G  G  Y  G  W  W  L  G  N  A  Y  F  M  K  W  R  M  E  D  V  F  G  V  V  K  Y  H  P  I  P  C  I  F  A  A  S  L  L  F  F  M  G  V  E  Y  T  L  H  M  I  P  A  S  A  P  P  F  D  L  G  F  I  V  T  V  P  L  N  R  L  L  A  A  K  P  A  L  N  T  L  F  A  G  L  N  T  :  V  F  V  A  M  Q  T  A  Y  I  L  G  T  F  L  I  E  G  R  P  R  A  T  I  S  A  L  F  M  F  T  F  R  G  I  L  G  Y  A  T  Q  L  P  L  P  E  :  D  F  L  G  S  G  V  D  F  P  V  G  N  V  S  F  F  L  F  Y  S  G  H  V  A  A  S  V  I  A  S  L  D  M  K  R  M  Q  R  W  E  M  A  R  V  F  D  A  L  N  V  L  Q  V  V  R  L  L  S  T  R  G  H  Y  T  I  D  L  A  V  G  I  G  A  G  I  L  F  D  S  M  A  G  N  Y  V  E  T  R  T  K  L  S  A  T  N  G  I  G  V  E  Y  S  P  K  H  E  N  G  V  K  Y  Q  S  V  S  S  D  *  N  V  S  T  Q  M  C  D  G  G  F  *  V  E  M  *  R  *  V  W  V  G  P  I  V  G  S  L  S  *  C  T  S  V  P  I  *  V  L  C  K  L  Q  L  Q  L  P  T  H  P  T  K  L  T  M  L  L  I  L  M  *  A  A  F  F  R  S  L  F  Y  S  F  S   </second_frame>
            <third_frame>   V  F  L  R  F  R  R  Q  *  T  E  T  H  F  I  V  G  I  V  L  P  L  L  S  A  K  G  I  P  L  K  G  K  L  T  L  Q  K  *  R  R  N  R  H  R  Q  R  E  R  R  L  V  V  M  D  G  G  *  V  M  R  I  S  *  S  G  G  W  R  M  Y  S  V  *  *  S  T  I  Q  Y  R  V  S  S  L  L  H  C  C  F  S  W  E  W  N  I  R  F  I  *  F  Q  L  L  L  R  L  S  I  S  D  L  L  L  Q  F  L  L  I  D  C  L  L  L  N  P  L  S  T  L  S  L  L  A  *  T  R :   C  L  W  R  C  K  R  R  T  F  W  G  L  F  *  L  K  D  G  L  E  R  Q  Y  R  R  C  L  C  S  H  S  E  G  F  S  G  M  L  H  N  C  R  C  R  R :   I  S  W  G  Q  G  W  I  S  Q  *  G  M  C  R  F  S  C  F  I  Q  G  M  L  R  P  R  *  L  L  R  W  I  *  N  V  C  R  D  G  K  W  L  E  Y  L  T  H  *  M  Y  C  K  L  *  G  Y  *  A  L  G  A  I  T  L  L  I  W  L  L  V  L  A  L  A  F  C  L  I  L  W  Q  E  T  M  W  R  L  G  Q  N  Y  L  P  L  M  V  L  V  W  N  T  L  L  S  M  K  T  E  *  N  T  K  V  Y  L  Q  I  K  M  Y  P  L  K  C  V  M  V  D  F  R  S  K  C  K  D  K  F  G  L  V  Q  L  *  G  L  Y  L  S  A  L  L  F  Q  F  R  Y  F  V  N  C  N  C  S  F  P  L  T  P  P  N  S  P  C  F  *  F  *  C  K  Q  L  S  L  D  P  F  F  I  H  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10455" stop="10045"/>
                    <exon start="9905" stop="9768"/>
                    <exon start="8443" stop="8087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFSPFPATMNGDTFHSRNSSSSTLSKRNTTERKVDVTEMKKKSASATGTEVGGYGWWLGNAYFMKWRMEDVFGVVKYHPIPCIFAASLLFFMGVEYTLHMIPASAPPFDLGFIVTVPLNRLLAAKPALNTLFAGLNTVFVAMQTAYILGTFLIEGRPRATISALFMFTFRGILGYATQLPLPEDFLGSGVDFPVGNVSFFLFYSGHVAASVIASLDMKRMQRWEMARVFDALNVLQVVRLLSTRGHYTIDLAVGIGAGILFDSMAGNYVETRTKLSATNGIGVEYSPKHENGVKYQSVSSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16371" PGL_stop="12879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16371" e_stop="16278"/>
            <exon e_start="15779" e_stop="15669"/>
            <exon e_start="15537" e_stop="15358"/>
            <exon e_start="15254" e_stop="15126"/>
            <exon e_start="15024" e_stop="14929"/>
            <exon e_start="14149" e_stop="13961"/>
            <exon e_start="13694" e_stop="13534"/>
            <exon e_start="13402" e_stop="12879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.718" acc_prob="0.985" e_score="0.947"/>
          <exon-intron don_prob="0.422" acc_prob="0.990" e_score="0.928"/>
          <exon-intron don_prob="0.789" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.551" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.430" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="16371" e_stop="16278" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.718" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16277" i_stop="15780" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="15779" e_stop="15669" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.422" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15537" e_stop="15358" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.823">
            <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15254" e_stop="15126" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15024" e_stop="14929" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14149" e_stop="13961" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.959" acc_prob="0.551">
            <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13694" e_stop="13534" e_length="161"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.430">
            <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13402" e_stop="12879" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16371" stop="16278"/>
              <exon start="15779" stop="15669"/>
              <exon start="15537" stop="15363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15747" stop="15669"/>
              <exon start="15537" stop="15358"/>
              <exon start="15254" stop="15126"/>
              <exon start="15024" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13534"/>
              <exon start="13402" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGAGAAATCCAAAATTTGGAAATTGACTGAAATTAGTGAACCTGCTCAAGTTCGTTCCTCGAGGCTTCCAGATAATCAACTGTCCGTGAGG : ATCATTAGATTAATGTACACAAATTCGGGAGGTGCAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG : GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG : ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG : GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG : CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG : TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG : CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</gDNA_template>
            <first_frame> A  G  E  I  Q  N  L  E  I  D  *  N  *  *  T  C  S  S  S  F  L  E  A  S  R  *  S  T  V  R  E   : D  H  *  I  N  V  H  K  F  G  R  C  N  S  G  F  G  I  Q  C  R  T  Q  T  L  E  V  A  T  E  R  E  E  R  D  R  K   : G  I  Y  C  C  P  P  S  I  M  A  T  F  Q  W  N  S  D  D  K  *  Y  K  R  H  K  P  *  R  S  C  S  M  L  C  T  F  Q  E  *  L  L  C  Y  V  R  I  W  W  K  N  F  F  V  *  H  D  D  F  *   : D  H  D  N  F  H  A  P  S  T  C  S  N  F  S  C  F  S  S  T  G  *  *  H  Y  C  Y  R  N  G  G  L  F  Y  T  N  I  *  C  S  R  *  *   : G  E  K  Q  T  Q  R  S  S  E  E  S  N  W  L  G  F  L  *  R  F  E  C  S  G  I  I  W  C  *  C  S   : A  M  C  L  E  H  G  W  M  G  E  E  S  Q  Q  V  F  A  D  P  L  W  *  S  N  K  S  S  C  S  D  T  G  S  V  P  S  R  S  D  A  F  V  G  C  S  *  N  T  D  S  N  I  *  S  I  K  A  *  M  R  E  A   : V  G  F  T  K  F  C  S  Y  *  C  D  V  F  V  *  *  P  I  N  F  C  K  F  *  *  W  K  C  E  Y  L  Y  R  C  S  T  Q  A  E  V  S  G  E  S  C  R  L  L  A  F  *  P  K  :  L  Q  S  I  S  T  C  R  C  C  S  S  I  *  I  K  P  M  R  S  R  T  Y  *  W  R  S  L  C  A  *  A  S  R  V  G  R  *  M  G  H  T  T  S  K  *  K  W  C  C  P  W  H  E  L  C  C  H  W  S  *  S  S  I  K  V  A  A  V  V  S  L  M  Q  M  L  L  C  Y  I  F  G  G  A  V  D  F  Q  I  *  D  T  T  S  *  R  Q  *  *  E  V  A  V  S  P  V  E  A  E  T  V  W  K  I  S  Y  S  V  K  G  R  I  Q  R  K  R  Q  N  V  D  N  Y  R  *  I  R  D  S  V  Q  P  L  E  K  F  C  L  F  *  V  V  S  V  Q  A  L  N  Y  G  S  V  I  I  E  S  S  S  K  P  V  D  F  T  L   </first_frame>
            <second_frame>  L  E  K  S  K  I  W  K  L  T  E  I  S  E  P  A  Q  V  R  S  S  R  L  P  D  N  Q  L  S  V  R  :  I  I  R  L  M  Y  T  N  S  G  G  A  I  L  A  L  A  Y  N  A  V  H  K  L  W  K  W  Q  R  N  E  R  N  V  T  G  K  :  A  S  T  A  V  P  P  Q  L  W  Q  P  S  S  G  I  L  M  T  N  D  I  S  D  T  N  P  E  E  A  V  P  C  F  A  L  S  K  N  D  S  Y  V  M  S  A  S  G  G  K  I  S  L  F  N  M  M  T  F  K  :  T  M  T  T  F  M  P  P  P  P  A  A  T  F  L  A  F  H  P  Q  D  N  N  I  I  A  I  G  M  E  D  S  S  I  Q  I  Y  N  V  R  V  D  E  :  V  K  S  K  L  K  G  H  Q  K  R  V  T  G  L  A  F  S  S  V  L  N  V  L  V  S  S  G  A  D  A  Q  :  L  C  V  W  S  M  D  G  W  E  K  K  A  S  K  F  L  Q  I  P  S  G  R  A  I  N  P  L  A  Q  T  R  V  Q  F  H  Q  D  Q  T  H  L  L  V  V  H  E  T  Q  I  A  I  Y  E  A  S  K  L  E  C  V  K  Q  :  W  V  S  P  N  F  A  V  T  D  A  T  Y  S  C  D  S  Q  S  I  F  A  S  F  D  D  G  S  V  S  I  F  T  A  A  A  L  K  L  R  C  R  V  N  P  A  A  Y  L  P  S  N  P  S :   S  R  V  Y  P  L  V  V  A  A  H  P  S  E  S  N  Q  C  A  V  G  L  T  D  G  G  V  Y  V  L  E  P  L  E  S  E  G  K  W  G  T  P  P  P  N  E  N  G  V  A  P  G  M  S  S  A  A  T  G  L  D  Q  A  S  R  *  R  Q  W  S  L  *  C  K  C  S  C  A  I  F  S  G  E  L  *  I  F  R  S  R  I  Q  P  L  D  V  S  D  K  K  W  Q  C  L  L  W  K  L  R  R  Y  G  R  S  V  I  Q  L  K  E  G  F  K  E  K  D  K  M  L  I  I  I  G  R  L  G  I  Q  F  N  L  L  R  N  F  A  C  F  K  L  F  L  S  K  H  *  T  M  A  V  *  L  S  K  A  Q  A  S  Q  L  I  L  L  S  </second_frame>
            <third_frame>   W  R  N  P  K  F  G  N  *  L  K  L  V  N  L  L  K  F  V  P  R  G  F  Q  I  I  N  C  P  *  G :   S  L  D  *  C  T  Q  I  R  E  V  Q  F  W  L  W  H  T  M  P  Y  T  N  S  G  S  G  N  G  T  R  G  T  *  Q  E  R :   H  L  L  L  S  P  L  N  Y  G  N  L  P  V  E  F  *  *  Q  M  I  *  A  T  Q  T  L  K  K  L  F  H  A  L  H  F  P  R  M  T  L  M  L  C  P  H  L  V  E  K  F  L  C  L  T  *  *  L  L  R :   P  *  Q  L  S  C  P  L  H  L  Q  Q  L  F  L  L  F  I  H  R  I  I  T  L  L  L  S  E  W  R  T  L  L  Y  K  Y  I  M  F  A  L  M  R :   *  K  A  N  S  K  V  I  R  R  E  *  L  A  W  L  S  L  A  F  *  M  F  W  Y  H  L  V  L  M  L  S :   Y  V  F  G  A  W  M  D  G  R  R  K  P  A  S  F  C  R  S  P  L  V  E  Q  *  I  L  L  L  R  H  G  F  S  S  I  K  I  R  R  I  C  W  L  F  M  K  H  R  *  Q  Y  M  K  H  Q  S  L  N  A  *  S  S :   G  F  H  Q  I  L  Q  L  L  M  R  R  I  R  V  I  A  N  Q  F  L  Q  V  L  M  M  E  V  *  V  S  L  P  L  Q  H  S  S  *  G  V  G  *  I  L  P  P  T  C  L  L  T  Q   : A  P  E  Y  I  H  L  S  L  L  L  I  H  L  N  Q  T  N  A  Q  *  D  L  L  M  A  E  F  M  C  L  S  L  *  S  R  K  V  N  G  A  H  H  L  Q  M  K  M  V  L  P  L  A  *  A  L  L  P  L  V  L  I  K  H  Q  G  S  G  S  G  L  S  D  A  N  A  P  V  L  Y  F  R  G  S  C  R  F  S  D  L  G  Y  N  L  L  T  S  V  I  R  S  G  S  V  S  C  G  S  *  D  G  M  E  D  Q  L  F  S  *  R  K  D  S  K  K  K  T  K  C  *  *  L  *  V  D  *  G  F  S  S  T  S  *  E  I  L  P  V  L  S  C  F  C  P  S  T  K  L  W  Q  C  N  Y  R  K  L  K  Q  A  S  *  F  Y  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16370" stop="16278"/>
                    <exon start="15779" stop="15669"/>
                    <exon start="15537" stop="15358"/>
                    <exon start="15254" stop="15126"/>
                    <exon start="15024" stop="14929"/>
                    <exon start="14149" stop="13961"/>
                    <exon start="13694" stop="13534"/>
                    <exon start="13402" stop="13204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKSKIWKLTEISEPAQVRSSRLPDNQLSVRIIRLMYTNSGGAILALAYNAVHKLWKWQRNERNVTGKASTAVPPQLWQPSSGILMTNDISDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSSVLNVLVSSGADAQLCVWSMDGWEKKASKFLQIPSGRAINPLAQTRVQFHQDQTHLLVVHETQIAIYEASKLECVKQWVSPNFAVTDATYSCDSQSIFASFDDGSVSIFTAAALKLRCRVNPAAYLPSNPSSRVYPLVVAAHPSESNQCAVGLTDGGVYVLEPLESEGKWGTPPPNENGVAPGMSSAATGLDQASR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13146" stop="12934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRSRIQPLDVSDKKWQCLLWKLRRYGRSVIQLKEGFKEKDKMLIIIGRLGIQFNLLRNFACFKLFLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14110" e_stop="13961"/>
            <exon e_start="13694" e_stop="12976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.551" e_score="0.980"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="14110" e_stop="13961" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.551">
            <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="13694" e_stop="12976" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14110" stop="13961"/>
              <exon start="13694" stop="12976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG : TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTG</gDNA_template>
            <first_frame> S  K  F  L  Q  I  P  S  G  R  A  I  N  P  L  A  Q  T  R  V  Q  F  H  Q  D  Q  T  H  L  L  V  V  H  E  T  Q  I  A  I  Y  E  A  S  K  L  E  C  V  K  Q  :  W  V  S  P  N  F  A  V  T  D  A  T  Y  S  C  D  S  Q  S  I  F  A  S  F  D  D  G  S  V  S  I  F  T  A  A  A  L  K  L  R  C  R  V  N  P  A  A  Y  L  P  S  N  P  R  Y  A  S  L  Y  S  N  F  F  P  K  V  *  I  I  S  G  T  I  G  D  *  N  *  V  *  F  H  I  L  S  C  L  S  P  S  C  L  T  M  Y  L  T  A  P  E  Y  I  H  L  S  L  L  L  I  H  L  N  Q  T  N  A  Q  *  D  L  L  M  A  E  F  M  C  L  S  L  *  S  R  K  V  N  G  A  H  H  L  Q  M  K  M  V  L  P  L  A  *  A  L  L  P  L  V  L  I  K  H  Q  G  S  G  S  G  L  S  D  A  N  A  P  V  L  Y  F  R  G  S  C  R  F  S  D  L  G  Y  N  L  L  T  S  V  I  R  S  G  S  V  S  C  G  S  *  D  G  M  E  D  Q  L  F  S  *  R  K  D  S  K  K  K  T  K  C  *  *  L  *  V  D  *  G  F  S  S  T  S   </first_frame>
            <second_frame>  A  S  F  C  R  S  P  L  V  E  Q  *  I  L  L  L  R  H  G  F  S  S  I  K  I  R  R  I  C  W  L  F  M  K  H  R  *  Q  Y  M  K  H  Q  S  L  N  A  *  S  S :   G  F  H  Q  I  L  Q  L  L  M  R  R  I  R  V  I  A  N  Q  F  L  Q  V  L  M  M  E  V  *  V  S  L  P  L  Q  H  S  S  *  G  V  G  *  I  L  P  P  T  C  L  L  T  Q  G  M  H  L  C  I  L  I  F  F  Q  R  Y  E  S  Y  Q  G  Q  *  G  T  K  T  R  C  S  F  I  F  S  H  V  C  L  L  V  A  *  Q  C  T  *  Q  L  Q  S  I  S  T  C  R  C  C  S  S  I  *  I  K  P  M  R  S  R  T  Y  *  W  R  S  L  C  A  *  A  S  R  V  G  R  *  M  G  H  T  T  S  K  *  K  W  C  C  P  W  H  E  L  C  C  H  W  S  *  S  S  I  K  V  A  A  V  V  S  L  M  Q  M  L  L  C  Y  I  F  G  G  A  V  D  F  Q  I  *  D  T  T  S  *  R  Q  *  *  E  V  A  V  S  P  V  E  A  E  T  V  W  K  I  S  Y  S  V  K  G  R  I  Q  R  K  R  Q  N  V  D  N  Y  R  *  I  R  D  S  V  Q  P  L  </second_frame>
            <third_frame>   Q  V  F  A  D  P  L  W  *  S  N  K  S  S  C  S  D  T  G  S  V  P  S  R  S  D  A  F  V  G  C  S  *  N  T  D  S  N  I  *  S  I  K  A  *  M  R  E  A   : V  G  F  T  K  F  C  S  Y  *  C  D  V  F  V  *  *  P  I  N  F  C  K  F  *  *  W  K  C  E  Y  L  Y  R  C  S  T  Q  A  E  V  S  G  E  S  C  R  L  L  A  F  *  P  K  V  C  I  F  V  F  *  F  F  S  K  G  M  N  H  I  R  D  N  R  G  L  K  L  G  V  V  S  Y  S  L  M  S  V  S  *  L  P  D  N  V  L  D  S  S  R  V  Y  P  L  V  V  A  A  H  P  S  E  S  N  Q  C  A  V  G  L  T  D  G  G  V  Y  V  L  E  P  L  E  S  E  G  K  W  G  T  P  P  P  N  E  N  G  V  A  P  G  M  S  S  A  A  T  G  L  D  Q  A  S  R  *  R  Q  W  S  L  *  C  K  C  S  C  A  I  F  S  G  E  L  *  I  F  R  S  R  I  Q  P  L  D  V  S  D  K  K  W  Q  C  L  L  W  K  L  R  R  Y  G  R  S  V  I  Q  L  K  E  G  F  K  E  K  D  K  M  L  I  I  I  G  R  L  G  I  Q  F  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14110" stop="13961"/>
                    <exon start="13694" stop="13494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFLQIPSGRAINPLAQTRVQFHQDQTHLLVVHETQIAIYEASKLECVKQWVSPNFAVTDATYSCDSQSIFASFDDGSVSIFTAAALKLRCRVNPAAYLPSNPRYASLYSNFFPKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13425" stop="13204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPDNVLDSSRVYPLVVAAHPSESNQCAVGLTDGGVYVLEPLESEGKWGTPPPNENGVAPGMSSAATGLDQASR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22825" PGL_stop="18427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22825" e_stop="22722"/>
            <exon e_start="22609" e_stop="22454"/>
            <exon e_start="22352" e_stop="22173"/>
            <exon e_start="22045" e_stop="21932"/>
            <exon e_start="20711" e_stop="20553"/>
            <exon e_start="20431" e_stop="20254"/>
            <exon e_start="20126" e_stop="20006"/>
            <exon e_start="19852" e_stop="19737"/>
            <exon e_start="19493" e_stop="19325"/>
            <exon e_start="19224" e_stop="19115"/>
            <exon e_start="19027" e_stop="18958"/>
            <exon e_start="18485" e_stop="18427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.474" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22825" e_stop="22722" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22721" i_stop="22610" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22609" e_stop="22454" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22453" i_stop="22353" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22352" e_stop="22173" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22172" i_stop="22046" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22045" e_stop="21932" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.904" acc_prob="0.955">
            <gDNA_intron_boundary i_start="21931" i_stop="20712" i_length="1220"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20711" e_stop="20553" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20552" i_stop="20432" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20431" e_stop="20254" e_length="178"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20253" i_stop="20127" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20126" e_stop="20006" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.867">
            <gDNA_intron_boundary i_start="20005" i_stop="19853" i_length="153"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19852" e_stop="19737" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.717">
            <gDNA_intron_boundary i_start="19736" i_stop="19494" i_length="243"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19493" e_stop="19325" e_length="169"/>
          </exon>
          <intron i_serial="9" don_prob="0.950" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19324" i_stop="19225" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19224" e_stop="19115" e_length="110"/>
          </exon>
          <intron i_serial="10" don_prob="0.474" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19114" i_stop="19028" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19027" e_stop="18958" e_length="70"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18957" i_stop="18486" i_length="472"/>
          </intron>
          <exon e_serial="12" e_score="0.966">
            <gDNA_exon_boundary e_start="18485" e_stop="18427" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22825" stop="22722"/>
              <exon start="22609" stop="22454"/>
              <exon start="22352" stop="22173"/>
              <exon start="22045" stop="21932"/>
              <exon start="20711" stop="20553"/>
              <exon start="20431" stop="20254"/>
              <exon start="20126" stop="20006"/>
              <exon start="19852" stop="19737"/>
              <exon start="19493" stop="19325"/>
              <exon start="19224" stop="19115"/>
              <exon start="19027" stop="18958"/>
              <exon start="18485" stop="18427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGAAAGAGAGAAAGCAGAGGGGAAGGAAAAAGACGGAGGCCCACCGCAAAAGCCCAAAAGGACCTCACCTTCTTCATCGTCTTCGTTGTTTATGTTCATCT : CGATCGGTTGTGAAAACCCTAAATTAAGGTCGGCGATTGTAGGATTGTGGTGGATCTGTTTTGATCAGTCAACGTGATGACTTCTTTAAGCAGAGAGCTGGTGTTTTTGATACTCCAGTTCTTAGATGAAGAGAAGTTCAAGGAAACTGTGCACAA : GTTGGAGAAGGAGTCGGGTTTCTTCTTCAACATGAGGTATTTTGAGGATTCGGTTACTAATGGAGAGTGGGATGAGGTGGAGAAGTATTTATCTGGGTTTACTAAGGTAGATGATAATCGGTACTCAATGAAAATATTTTTTGAGATCCGAAAACAGAAGTATCTGGAAGCACTTGATAG : GCATGATCAGGCTAAGGCTGTGGAGATTCTAGTGAAAGATCTGAAAGTGTTTTCCACATTTAATGAAGAGTTGTTCAAGGAGATAACGCTCCTCTTGACATTGCAGAATTTTAG : GGAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAG : TTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGA : CCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTG : CATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAG : GTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTG : TTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAG : GCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTG : GTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCATGGTGGTGATGATTTG</gDNA_template>
            <first_frame> K  R  K  R  E  S  R  G  E  G  K  R  R  R  P  T  A  K  A  Q  K  D  L  T  F  F  I  V  F  V  V  Y  V  H  L :   D  R  L  *  K  P  *  I  K  V  G  D  C  R  I  V  V  D  L  F  *  S  V  N  V  M  T  S  L  S  R  E  L  V  F  L  I  L  Q  F  L  D  E  E  K  F  K  E  T  V  H  K :   L  E  K  E  S  G  F  F  F  N  M  R  Y  F  E  D  S  V  T  N  G  E  W  D  E  V  E  K  Y  L  S  G  F  T  K  V  D  D  N  R  Y  S  M  K  I  F  F  E  I  R  K  Q  K  Y  L  E  A  L  D  R :   H  D  Q  A  K  A  V  E  I  L  V  K  D  L  K  V  F  S  T  F  N  E  E  L  F  K  E  I  T  L  L  L  T  L  Q  N  F  R :   E  N  E  Q  L  S  K  Y  G  D  T  K  S  A  R  A  I  M  L  V  E  L  K  K  L  I  E  A  N  P  L  F  R  E  K  L  Q  F  P  S  L  K  N  S  R  L  R  T  L  I  N  Q  S :   L  N  W  Q  H  Q  L  C  K  N  P  K  P  N  P  D  I  K  T  L  F  V  D  H  A  C  G  Q  P  N  G  A  R  A  P  S  P  V  A  N  P  I  I  G  S  M  P  K  V  G  G  F  P  P  I  G  A  H  G  :  P  F  Q  P  A  Q  A  P  I  A  S  L  G  G  W  M  T  N  P  P  S  M  P  H  Q  A  I  S  G  G  P  I  G  L  S  P  P  T  N  A   : A  S  M  L  K  H  P  R  T  P  P  A  S  N  A  A  L  D  Y  Q  T  A  D  S  E  H  V  L  K  R  P  R  P  F  G  M  S  E  E  :  V  N  N  L  P  V  N  I  F  P  V  T  Y  P  G  Q  S  H  A  H  S  L  H  S  S  D  D  L  P  K  T  V  V  V  N  L  N  Q  G  S  A  V  K  S  M  D  F  H  P  V  Q  Q  T  L  L  L   : V  G  T  N  I  G  D  I  A  I  W  E  I  G  G  R  E  R  L  A  F  K  N  F  K  V  W  E  I  G  N  C  S  M  T  L  Q  :  A  S  L  A  N  E  Y  T  A  T  V  N  R  V  M  W  S  P  D  G  N  L  L   : G  V  A  Y  S  K  H  I  V  H  L  Y  S  Y  H  G  G  D  D  L </first_frame>
            <second_frame>  R  E  R  E  K  A  E  G  K  E  K  D  G  G  P  P  Q  K  P  K  R  T  S  P  S  S  S  S  S  L  F  M  F  I   : S  I  G  C  E  N  P  K  L  R  S  A  I  V  G  L  W  W  I  C  F  D  Q  S  T  *  *  L  L  *  A  E  S  W  C  F  *  Y  S  S  S  *  M  K  R  S  S  R  K  L  C  T   : S  W  R  R  S  R  V  S  S  S  T  *  G  I  L  R  I  R  L  L  M  E  S  G  M  R  W  R  S  I  Y  L  G  L  L  R  *  M  I  I  G  T  Q  *  K  Y  F  L  R  S  E  N  R  S  I  W  K  H  L  I   : G  M  I  R  L  R  L  W  R  F  *  *  K  I  *  K  C  F  P  H  L  M  K  S  C  S  R  R  *  R  S  S  *  H  C  R  I  L   : G  R  M  N  S  F  Q  S  M  E  I  P  S  L  L  G  R  *  C  L  L  S  *  K  N  *  S  R  P  I  L  F  S  A  R  S  F  S  F  L  A  *  R  T  Q  G  C  G  H  *  *  T  R   : V  *  I  G  S  I  S  Y  A  R  T  Q  S  P  I  L  I  *  K  H  S  L  L  T  M  L  V  G  N  Q  M  V  L  G  L  L  R  Q  L  L  I  Q  *  L  V  L  C  L  K  *  V  V  F  H  L  *  A  P  M  D :   H  S  S  Q  H  K  H  L  L  L  R  L  E  D  G  *  P  I  L  P  L  C  H  T  K  L  F  Q  E  D  Q  *  A  *  A  L  L  L  M  L  :  H  P  C  *  S  I  L  G  L  L  L  L  A  M  L  R  W  T  T  K  Q  P  I  Q  S  M  Y  *  R  G  Q  D  P  L  G  C  Q  R  R :   S  I  I  S  P  S  T  F  S  P  S  H  I  L  D  R  A  M  L  I  A  C  I  L  L  M  T  C  P  R  L  L  W  *  T  *  I  K  G  L  L  L  R  A  W  I  S  I  L  C  N  K  L  F  F  L  :  L  E  Q  T  L  V  T  L  L  Y  G  R  L  V  A  G  K  G  L  H  L  K  I  L  K  F  G  R  *  V  T  V  Q  *  L  C  R :   L  L  *  R  M  N  T  L  Q  Q  L  T  V  *  C  G  V  L  M  G  T  F  L  :  V  L  H  I  L  S  T  *  F  I  Y  T  H  T  M  V  V  M  I   </second_frame>
            <third_frame>   E  K  E  R  K  Q  R  G  R  K  K  T  E  A  H  R  K  S  P  K  G  P  H  L  L  H  R  L  R  C  L  C  S  S  :  R  S  V  V  K  T  L  N  *  G  R  R  L  *  D  C  G  G  S  V  L  I  S  Q  R  D  D  F  F  K  Q  R  A  G  V  F  D  T  P  V  L  R  *  R  E  V  Q  G  N  C  A  Q  :  V  G  E  G  V  G  F  L  L  Q  H  E  V  F  *  G  F  G  Y  *  W  R  V  G  *  G  G  E  V  F  I  W  V  Y  *  G  R  *  *  S  V  L  N  E  N  I  F  *  D  P  K  T  E  V  S  G  S  T  *  *  :  A  *  S  G  *  G  C  G  D  S  S  E  R  S  E  S  V  F  H  I  *  *  R  V  V  Q  G  D  N  A  P  L  D  I  A  E  F  *  :  G  E  *  T  A  F  K  V  W  R  Y  Q  V  C  *  G  D  N  A  C  *  V  K  K  I  D  R  G  Q  S  S  F  P  R  E  A  S  V  S  *  L  K  E  L  K  A  A  D  I  D  K  P  E  :  F  K  L  A  A  S  A  M  Q  E  P  K  A  Q  S  *  Y  K  N  T  L  C  *  P  C  L  W  A  T  K  W  C  S  G  S  F  A  S  C  *  S  N  N  W  F  Y  A  *  S  R  W  F  S  T  Y  R  R  P  W   : T  I  P  A  S  T  S  T  Y  C  F  A  W  R  M  D  D  Q  S  S  L  Y  A  T  P  S  Y  F  R  R  T  N  R  L  K  P  S  Y  *  C  C :   I  H  A  K  A  S  *  D  S  S  C  *  Q  C  C  V  G  L  P  N  S  R  F  R  A  C  T  E  E  A  K  T  L  W  D  V  R  G   : G  Q  *  S  P  R  Q  H  F  P  R  H  I  S  W  T  E  P  C  S  *  L  A  F  F  *  *  L  A  Q  D  C  C  G  E  L  E  S  R  V  C  C  *  E  H  G  F  P  S  C  A  T  N  S  S  S  C :   W  N  K  H  W  *  H  C  Y  M  G  D  W  W  Q  G  K  A  C  I  *  K  F  *  S  L  G  D  R  *  L  F  N  D  F  A   : G  F  F  S  E  *  I  H  C  N  S  *  P  C  D  V  E  S  *  W  E  P  S  W :   C  C  I  F  *  A  H  S  S  S  I  L  I  P  W  W  *  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22545" stop="22454"/>
                    <exon start="22352" stop="22173"/>
                    <exon start="22045" stop="21932"/>
                    <exon start="20711" stop="20553"/>
                    <exon start="20431" stop="20254"/>
                    <exon start="20126" stop="20006"/>
                    <exon start="19852" stop="19737"/>
                    <exon start="19493" stop="19325"/>
                    <exon start="19224" stop="19115"/>
                    <exon start="19027" stop="18958"/>
                    <exon start="18485" stop="18427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNVMTSLSRELVFLILQFLDEEKFKETVHKLEKESGFFFNMRYFEDSVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDQAKAVEILVKDLKVFSTFNEELFKEITLLLTLQNFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFREKLQFPSLKNSRLRTLINQSLNWQHQLCKNPKPNPDIKTLFVDHACGQPNGARAPSPVANPIIGSMPKVGGFPPIGAHGPFQPAQAPIASLGGWMTNPPSMPHQAISGGPIGLSPPTNAASMLKHPRTPPASNAALDYQTADSEHVLKRPRPFGMSEEVNNLPVNIFPVTYPGQSHAHSLHSSDDLPKTVVVNLNQGSAVKSMDFHPVQQTLLLVGTNIGDIAIWEIGGRERLAFKNFKVWEIGNCSMTLQASLANEYTATVNRVMWSPDGNLLGVAYSKHIVHLYSYHGGDDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34305" PGL_stop="29525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34305" e_stop="33862"/>
            <exon e_start="33596" e_stop="33449"/>
            <exon e_start="30811" e_stop="30549"/>
            <exon e_start="30410" e_stop="29525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.784" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34305" e_stop="33862" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.784" acc_prob="0.828">
            <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33596" e_stop="33449" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30811" e_stop="30549" e_length="263"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.973">
            <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="30410" e_stop="29525" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34305" stop="33862"/>
              <exon start="33596" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="29525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCACGACAGTCGCCCATTCTTCCTTCTCCCCCCCACTCCCCCACCCCCCAAACCACTTTCGGTTTCAACTGAAAGCAGAATTCGATAGAGTTGGATTGACTAAAAGCATCCCCATTTGGAATCCACTGTTTTCTCTCTCTCTCTCTCTCTGTAGCTTTTTTGCAATCTTTGATTCGAAGGAAGTTTCTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCG : AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG : ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC : CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTACTTTTCTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGTTTATATGCTG</gDNA_template>
            <first_frame> C  T  T  V  A  H  S  S  F  S  P  P  L  P  H  P  P  N  H  F  R  F  Q  L  K  A  E  F  D  R  V  G  L  T  K  S  I  P  I  W  N  P  L  F  S  L  S  L  S  L  C  S  F  F  A  I  F  D  S  K  E  V  S  L  L  *  R  K  W  G  S  F  I  L  F  E  Q  R  K  T  V  R  *  S  D  C  *  V  E  F  T  A  F  S  S  F  L  L  W  G  S  E  R  L  I  L  D  R  L  I  *  Y  T  L  L  L  R  K  R  K  L  S  F  L  L  F  Q  Y  S  K  F  K  S  Y  G  L  F  V  Y  I  L  L  C  Q  G  F  R  S  :  K  G  A  S  E  E  A  A  N  M  E  G  F  F  S  E  G  V  A  L  C  Y  E  *  F  *  L  *  *  Q  A  W  R  R  W  F  W  K  C  L  L  G  A  A  L  G  W  I  S   : D  S  S  Q  K  A  K  G  V  E  Q  Q  S  *  D  G  I  C  C  *  S  *  N  S  G  *  S  T  T  Q  K  S  S  K  F  T  R  L  L  C  R  R  P  G  T  S  D  R  I  *  L  H  A  *  F  K  L  A  F  S  S  S  R  P  A  F  C  *  K  P  S  *  L  E  T  P  N  E  C  C  N  W  I  S  *  G  N  C  :  L  S  A  P  P  C  N  P  A  Y  H  P  Q  R  H  Q  S  K  Q  R  A  A  R  F  *  F  P  S  P  S  C  *  F  W  I  C  K  V  H  P  R  W  C  N  T  C  N  H  *  S  K  R  H  S  R  L  S  C  T  R  I  C  N  V  R  E  G  I  G  E  L  *  C  L  Q  L  W  Y  S  F  A  R  A  C  *  W  Q  E  T  N  *  E  G  Q  S  N  C  E  T  H  N  H  *  L  G  T  T  T  C  V  *  R  E  V  E  *  T  C  R  P  K  V  E  W  E  L  R  G  G  R  I  Q  K  S  G  S  C  C  S  R  L  C  S  K  S  T  *  E  E  T  N  Y  A  *  R  Y  R  A  T  E  R  R  S  K  R  E  I  H  S  F  G  K  *  *  Y  V  Q  D  S  S  S  S  G  *  *  C  F  V  R  N  R  R  Q  C  R  L  Y  C  F  R  G  K  R  T  K  T  R  N  *  K  G  R  G  T  S  L  R  E  C  G  *  L  I  V  A  C  S  Y  *  I  C  V  G  L  N  V  F  F  G  E  E  I  L  I  I  I  T  W  N  N  R  Y  F  S  F  F  F  *  I  G  S  I  I  S  L  G  C  A  G  M  D  V  I  L  V  F  R  V  I  F  S  C  N  M  L  N  T  R  N  E  N  C  L  Y  A  </first_frame>
            <second_frame>  A  R  Q  S  P  I  L  P  S  P  P  H  S  P  T  P  Q  T  T  F  G  F  N  *  K  Q  N  S  I  E  L  D  *  L  K  A  S  P  F  G  I  H  C  F  L  S  L  S  L  S  V  A  F  L  Q  S  L  I  R  R  K  F  L  C  C  N  G  N  G  G  A  L  F  F  L  S  R  E  K  Q  S  D  K  V  I  A  E  W  S  L  R  L  F  L  L  F  C  Y  G  V  L  K  D  *  F  L  I  D  L  F  D  I  L  F  C  *  E  R  E  S  *  V  F  C  C  F  N  I  Q  N  S  K  A  M  D  F  S  S  I  F  C  C  V  K  G  S  D  R :   K  G  Q  A  K  K  Q  P  T  W  R  V  F  S  L  K  E  L  H  S  A  T  N  N  F  N  Y  D  N  K  L  G  E  G  G  F  G  S  V  Y  W  G  Q  L  W  D  G  S  Q  :  I  A  V  K  R  L  K  V  W  S  N  K  A  E  M  E  F  A  V  E  V  E  I  L  A  R  V  R  H  K  N  L  L  S  L  R  G  Y  C  A  E  G  Q  E  R  L  I  V  Y  D  Y  M  P  N  L  S  L  L  S  H  L  H  G  Q  H  S  A  E  S  L  L  D  W  K  R  R  M  N  V  A  I  G  S  A  E  G  I  A :   Y  L  H  H  H  A  T  P  H  I  I  H  R  D  I  K  A  S  N  V  L  L  D  S  D  F  Q  A  Q  V  A  D  F  G  F  A  K  F  I  P  D  G  A  T  H  V  T  T  R  V  K  G  T  L  G  Y  L  A  P  E  Y  A  M  L  G  K  A  S  E  S  C  D  V  Y  S  F  G  I  L  L  L  E  L  A  S  G  K  K  P  I  E  K  V  N  L  T  V  K  R  T  I  T  D  W  A  L  P  L  V  C  E  G  K  L  S  E  L  A  D  P  R  L  S  G  N  Y  V  E  E  E  F  K  R  V  V  L  V  A  L  V  C  A  Q  N  R  P  E  K  R  P  T  M  L  D  V  I  E  L  L  K  G  E  A  K  E  K  F  T  A  L  E  N  D  D  M  F  K  I  P  P  V  V  D  D  D  V  L  S  G  T  E  G  N  A  D  S  T  A  S  E  E  K  E  P  K  P  E  I  E  K  V  E  V  Q  A  *  E  N  V  G  N  *  L  W  L  V  H  I  E  F  V  *  D  L  M  Y  F  L  E  K  K  Y  *  *  S  L  L  G  T  T  G  T  F  L  F  F  F  E  L  E  V  S  F  H  W  V  V  Q  E  W  M  L  F  S  S  F  V  *  F  S  R  V  I  C  *  T  Q  E  M  K  T  V  Y  M  L </second_frame>
            <third_frame>   H  D  S  R  P  F  F  L  L  P  P  T  P  P  P  P  K  P  L  S  V  S  T  E  S  R  I  R  *  S  W  I  D  *  K  H  P  H  L  E  S  T  V  F  S  L  S  L  S  L  *  L  F  C  N  L  *  F  E  G  S  F  F  A  V  T  E  M  G  E  L  Y  S  F  *  A  E  K  N  S  Q  I  K  *  L  L  S  G  V  Y  G  F  F  F  F  S  A  M  G  F  *  K  I  D  S  *  S  T  Y  L  I  Y  S  S  V  K  K  E  K  V  E  F  F  A  V  S  I  F  K  I  Q  K  L  W  T  F  R  L  Y  F  A  V  S  R  V  Q  I   : E  R  G  K  R  R  S  S  Q  H  G  G  F  F  L  *  R  S  C  T  L  L  R  I  I  L  T  M  I  T  S  L  E  K  V  V  L  E  V  F  T  G  G  S  S  G  M  D  L  R :   *  Q  S  K  G  *  R  C  G  A  T  K  L  R  W  N  L  L  L  K  L  K  F  W  L  E  Y  D  T  K  I  F  *  V  Y  A  V  T  V  Q  K  A  R  N  V  *  S  Y  M  T  T  C  L  I  *  A  C  F  L  I  F  T  A  S  I  L  L  K  A  F  L  I  G  N  A  E  *  M  L  Q  L  D  Q  L  R  E  L   : P  I  C  T  T  M  Q  P  R  I  S  S  T  E  T  S  K  Q  A  T  C  C  S  I  L  I  S  K  P  K  L  L  I  L  D  L  Q  S  S  S  Q  M  V  Q  H  M  *  P  L  E  *  K  A  L  *  A  I  L  H  Q  N  M  Q  C  *  G  R  H  R  R  A  V  M  F  T  A  L  V  F  F  C  *  S  L  L  V  A  R  N  Q  L  R  R  S  I  *  L  *  N  A  Q  S  L  I  G  H  Y  H  L  C  V  K  G  S  *  V  N  L  Q  T  Q  G  *  V  G  T  T  W  R  K  N  S  K  E  W  F  L  L  L  S  F  V  L  K  I  D  L  R  R  D  Q  L  C  L  T  L  S  S  Y  *  K  E  K  Q  K  R  N  S  Q  L  W  K  M  M  I  C  S  R  F  L  Q  *  W  M  M  M  F  C  Q  E  Q  K  A  M  Q  T  L  L  L  Q  R  K  K  N  Q  N  Q  K  L  K  R  *  R  Y  K  L  K  R  M  W  V  I  D  C  G  L  F  I  L  N  L  C  R  T  *  C  I  F  W  R  R  N  T  D  N  H  Y  L  E  Q  Q  V  L  F  F  F  F  L  N  W  K  Y  H  F  I  G  L  C  R  N  G  C  Y  S  R  L  S  C  D  F  L  V  *  Y  V  E  H  K  K  *  K  L  F  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33941" stop="33862"/>
                    <exon start="33596" stop="33449"/>
                    <exon start="30811" stop="30549"/>
                    <exon start="30410" stop="29762"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCCFNIQNSKAMDFSSIFCCVKGSDRKGQAKKQPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKAEMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWKRRMNVAIGSAEGIAYLHHHATPHIIHRDIKASNVLLDSDFQAQVADFGFAKFIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKKPIEKVNLTVKRTITDWALPLVCEGKLSELADPRLSGNYVEEEFKRVVLVALVCAQNRPEKRPTMLDVIELLKGEAKEKFTALENDDMFKIPPVVDDDVLSGTEGNADSTASEEKEPKPEIEKVEVQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34205" stop="33993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKASPFGIHCFLSLSLSVAFLQSLIRRKFLCCNGNGGALFFLSREKQSDKVIAEWSLRLFLLFCYGVLKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40599" PGL_stop="44193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40599" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40599" e_stop="41077" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44193" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40599" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40943" stop="41077"/>
              <exon start="41216" stop="41280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGA</gDNA_template>
            <first_frame> A  *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  Y  F  A  I  I  L  L  S  A  S  Q  F  V  L  Q  F  F  C  C  D  E  *  N   </first_frame>
            <second_frame>  L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H  T  L  L  *  F  C  F  L  L  L  S  L  F  Y  N  F  F  A  V  M  N  E  M  </second_frame>
            <third_frame>   L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  L  C  Y  N  F  A  F  C  F  S  V  C  S  T  I  F  L  L  *  *  M  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40795" e_stop="41336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="40795" e_stop="41336" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40795" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</gDNA_template>
            <first_frame> Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S  G  F  F  I  F  F  L  V  F  S  Y  L  F  *  I  H  S  F  D  V  F  L  V  *  Q  Y  L  I  Y  I  Y  I  Y  I  Y  I  Y  V  Y  L  F  M  M  Y  C  L  G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *   </first_frame>
            <second_frame>  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  V  F  S  F  S  F  L  F  L  V  I  F  F  K  F  T  V  L  M  F  S  L  Y  N  N  I  *  Y  I  Y  I  Y  I  Y  I  Y  M  F  I  F  L  *  C  T  V  *  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N  </second_frame>
            <third_frame>   K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R  F  F  H  F  L  S  C  F  *  L  S  F  L  N  S  Q  F  *  C  F  P  C  I  T  I  S  D  I  Y  I  Y  I  Y  I  Y  I  C  L  S  F  Y  D  V  L  F  R  L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVFSFSFLFLVIFFKFTVLMFSLYNNI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40797" stop="41036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPLDSQKTLIPIPISFHIISKISLICREADGDLQCLQLSAARDLSSKIYNRRRRHQRRRLFPRRFVALPLLLRFGSRPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41133" stop="41336"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFPCITISDIYIYIYIYICLSFYDVLFRLLRRLWKSPAMTWMLLLRGYMSFTLCMAMQRQLLMERWIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44639" PGL_stop="55538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44639" e_stop="45023"/>
            <exon e_start="45574" e_stop="45642"/>
            <exon e_start="46021" e_stop="46113"/>
            <exon e_start="47274" e_stop="47392"/>
            <exon e_start="48153" e_stop="48348"/>
            <exon e_start="49810" e_stop="49985"/>
            <exon e_start="51437" e_stop="51566"/>
            <exon e_start="52155" e_stop="52315"/>
            <exon e_start="53447" e_stop="53538"/>
            <exon e_start="54701" e_stop="54809"/>
            <exon e_start="55183" e_stop="55538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44639" e_stop="45023" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45024" i_stop="45573" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45574" e_stop="45642" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45643" i_stop="46020" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46021" e_stop="46113" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47274" e_stop="47392" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47393" i_stop="48152" i_length="760"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48153" e_stop="48348" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.949">
            <gDNA_intron_boundary i_start="48349" i_stop="49809" i_length="1461"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="49810" e_stop="49985" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51437" e_stop="51566" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52155" e_stop="52315" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53447" e_stop="53538" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.973">
            <gDNA_intron_boundary i_start="53539" i_stop="54700" i_length="1162"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54701" e_stop="54809" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54810" i_stop="55182" i_length="373"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="55183" e_stop="55538" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44639" stop="45023"/>
              <exon start="45574" stop="45642"/>
              <exon start="46021" stop="46113"/>
              <exon start="47274" stop="47392"/>
              <exon start="48153" stop="48348"/>
              <exon start="49810" stop="49985"/>
              <exon start="51437" stop="51566"/>
              <exon start="52155" stop="52315"/>
              <exon start="53447" stop="53538"/>
              <exon start="54701" stop="54809"/>
              <exon start="55183" stop="55538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCTTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAG : TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG : ATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG : ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACG : TTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAG : GTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGG : TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG : GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG : TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGG : CAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGG : GTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCC</gDNA_template>
            <first_frame> L  L  L  L  S  C  E  K  K  E  A  S  K  H  Q  N  A  G  Q  L  T  S  L  L  *  S  N  E  L  D  G  N  G  Q  H  S  I  S  I  S  P  S  F  F  S  H  L  R  P  F  P  F  S  L  S  S  S  F  L  L  L  *  F  L  L  R  W  D  P  L  V  G  P  Y  E  V  Y  I  H  F  L  F  F  I  S  E  D  S  G  T  T  F  W  E  I  G  G  C  C  C  C  R  L  L  L  Y  T  W  G  P  K  I  C  *  Q  *  R  H  Q  G  C  L  S  K  V  S  S  T   : V  S  P  *  C  Q  Q  G  T  *  C  T  R  K  V  *  G  D  *  R  C  L  *   : D  T  I  R  *  Q  K  K  S  T  I  *  S  I  W  *  S  R  G  E  K  F  C  R  G  P  S  R  C  L  H   : D  K  S  F  *  S  I  *  D  I  L  W  T  F  Y  G  W  F  W  N  G  W  S  W  I  W  N  A  S  P  Q  Y  C  Y  Q  G  *  R  S  T  :  L  R  H  D  I  R  I  F  S  G  Y  L  W  S  *  K  R  F  R  A  F  T  S  *  N  L  *  G  L  C  G  N  W  G  K  G  R  L  Q  N  E  D  M  F  N  L  W  W  P  R  S  S  Y  E  D  R  T  N  T  V  W  H  V  F  S   : G  F  C  L  P  K  L  W  W  G  W  *  N  D  L  *  I  L  S  *  M  L  R  R  G  A  D  T  S  E  E  R  Y  K  S  Q  D  T  P  W  S  K  Q  G  K  Y  P  Q  S  C  W  *  G  *  C  R  S  *  G  :  C  P  T  G  R  S  L  C  L  S  *  H  *  R  D  T  *  D  P  K  R  W  H  K  S  D  F  N  S  F  S  R  L  S  R  C  Y  T  W  G  C  C  *   : G  *  N  S  G  W  F  D  *  S  P  D  S  S  R  H  S  T  W  G  C  A  C  L  G  K  E  R  S  T  K  A  K  *  A  I  N  T  R  *  S  L  V  H  D  *  S  *  H  T  K  T  H  Q  :  C  D  G  A  *  I  A  *  R  T  C  F  S  Y  *  G  I  K  H  S  Y  K  N  S  P  G  G  S  A  N  G :   K  S  Y  *  N  S  S  R  F  R  F  K  C  S  K  N  *  *  V  I  I  R  R  S  R  R  S  I  E  E  V  S  K  F  C  W  :  V  C  R  K  W  C  T  E  M  V  K  R  Q  P  V  V  L  G  A  G  I  L  P  Q  Q  S  S  F  I  R  Q  W  H  *  I  L  C  A  S  K  Q  P  L  L  H  L  A  A  F  H  F  L  E  *  L  F  G  D  S  A  C  K  I  E  S  S  H  L  I  L  L  G  N  L  I  L  R  L  C  K  F  *  Q  I  Y  S  P  P  Q  R  S  W  *  D  G  F  *  Q  L  F  L  Y  K  K  F  C  M  S  A  S  I  *  Q  K  P  R  N  I   </first_frame>
            <second_frame>  F  F  F  F  L  V  K  K  K  K  Q  A  S  I  K  T  R  D  S  *  P  V  F  C  S  P  M  N  S  T  A  M  A  S  T  A  S  L  S  L  R  P  S  S  L  I  S  D  R  S  H  S  P  C  L  P  P  S  S  S  S  S  F  F  S  G  G  T  R  L  W  A  H  T  K  F  I  S  I  S  F  S  S  S  Q  K  I  P  G  R  R  F  G  R  L  V  V  A  A  A  A  D  Y  Y  S  T  L  G  V  P  K  S  A  N  S  K  D  I  K  A  A  Y  R  R  L  A  R  Q  :  Y  H  P  D  V  N  K  E  P  N  A  P  E  K  F  K  E  I  K  D  A  Y  E  :  I  L  S  D  D  K  K  R  A  L  Y  D  Q  Y  G  E  A  G  V  K  S  S  V  G  A  Q  A  G  A  Y  T  :  T  N  P  F  D  L  F  E  T  F  F  G  P  S  M  G  G  F  G  M  D  G  A  G  F  G  T  R  R  R  S  T  V  T  K  G  E  D  L  R :   Y  D  M  T  L  E  F  S  A  A  I  F  G  A  E  K  D  F  E  L  S  H  L  E  T  C  E  V  C  V  G  T  G  A  K  V  G  S  K  M  R  I  C  S  T  C  G  G  R  G  Q  V  M  R  T  E  Q  T  P  F  G  M  F  S  Q  :  V  S  V  C  P  N  C  G  G  D  G  E  M  I  S  E  Y  C  R  K  C  S  G  E  G  R  I  R  V  K  K  D  I  K  V  K  I  P  P  G  V  N  K  G  S  I  L  R  V  A  G  E  G  D  A  G  P  R  G :   A  P  P  G  D  L  Y  V  Y  L  D  I  E  E  I  P  E  I  Q  R  D  G  I  N  L  I  S  T  V  S  V  G  Y  L  D  A  I  L  G  A  V  V  K  :  V  K  T  V  D  G  L  T  D  L  Q  I  P  P  G  T  Q  P  G  D  V  L  V  L  A  R  K  G  A  P  K  L  N  K  P  S  I  R  G  D  H  L  F  T  I  K  V  S  I  P  K  R  I  S :   V  M  E  R  E  L  L  E  E  L  A  S  L  T  K  G  S  S  T  R  T  K  T  R  P  A  V  Q  Q  T   : A  K  V  T  E  T  P  V  G  S  D  S  S  A  A  K  T  D  E  S  S  S  E  D  R  D  D  P  L  K  K  L  A  N  F  A  G :   S  V  V  N  G  A  L  K  W  L  R  D  N  L  *  Y  L  V  L  G  Y  C  L  S  N  L  L  L  Y  D  N  G  I  E  F  Y  V  L  Q  N  S  H  Y  C  I  L  R  P  F  I  S  *  N  N  F  L  V  I  L  P  V  K  L  N  P  A  T  L  F  F  *  E  T  *  S  F  A  F  V  N  S  D  K  Y  I  L  H  L  K  E  V  G  E  M  D  S  N  S  Y  F  C  I  R  N  F  V  C  Q  Q  A  F  N  R  N  P  E  I  S  </second_frame>
            <third_frame>   S  S  S  F  L  *  K  K  R  S  K  Q  A  S  K  R  G  T  V  N  Q  S  S  V  V  Q  *  T  R  R  Q  W  P  A  Q  H  L  Y  L  S  V  L  L  L  S  S  P  T  V  P  I  L  P  V  F  L  L  P  P  P  L  V  S  S  P  V  G  P  A  C  G  P  I  R  S  L  Y  P  F  P  F  L  H  L  R  R  F  R  D  D  V  L  G  D  W  W  L  L  L  L  P  I  I  T  L  H  L  G  S  Q  N  L  L  T  V  K  T  S  R  L  L  I  E  G  *  L  D  S :   I  T  L  M  S  T  R  N  L  M  H  Q  K  S  L  R  R  L  K  M  L  M  R :   Y  Y  Q  M  T  K  K  E  H  Y  M  I  N  M  V  K  P  G  *  K  V  L  *  G  P  K  P  V  L  T  R :   Q  I  L  L  I  Y  L  R  H  S  L  D  L  L  W  V  V  L  E  W  M  E  L  D  L  E  R  V  A  A  V  L  L  P  R  V  K  I  Y   : V  T  T  *  H  *  N  F  Q  R  L  S  L  E  L  K  K  I  S  S  F  H  I  L  K  L  V  R  S  V  W  E  L  G  Q  R  *  A  P  K  *  G  Y  V  Q  L  V  V  A  E  V  K  L  *  G  P  N  K  H  R  L  A  C  F  L  R :   F  L  S  A  Q  T  V  V  G  M  V  K  *  S  L  N  I  V  V  N  A  Q  A  R  G  G  Y  E  *  R  K  I  *  K  S  R  Y  P  L  E  *  T  R  E  V  S  S  E  L  L  V  R  V  M  Q  V  L  G   : V  P  H  R  E  I  F  M  S  I  L  T  L  K  R  Y  L  R  S  K  E  M  A  *  I  *  F  Q  Q  F  Q  S  V  I  *  M  L  Y  L  G  L  L  L  R :   L  K  Q  W  M  V  *  L  I  S  R  F  L  Q  A  L  N  L  G  M  C  L  S  W  Q  G  K  E  H  Q  S  *  I  S  H  Q  Y  A  V  I  T  C  S  R  L  K  L  A  Y  Q  N  A  S   : V  *  W  S  V  N  C  L  K  N  L  L  L  L  L  R  D  Q  A  L  V  Q  K  L  A  R  R  F  S  K  R  :  Q  K  L  L  K  L  Q  *  V  Q  I  Q  V  Q  Q  K  L  M  S  H  H  Q  K  I  E  T  I  H  *  R  S  *  Q  I  L  L   : G  L  S  *  M  V  H  *  N  G  *  E  T  T  C  S  T  W  C  W  D  T  A  S  A  I  F  F  Y  T  T  M  A  L  N  F  M  C  F  K  T  A  I  I  A  S  C  G  L  S  F  L  R  I  T  F  W  *  F  C  L  *  N  *  I  Q  P  P  Y  S  F  R  K  P  N  P  S  P  L  *  I  L  T  N  I  F  S  T  S  K  K  L  V  R  W  I  L  T  A  I  F  V  *  E  I  L  Y  V  S  K  H  L  T  E  T  Q  K  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44700" stop="45023"/>
                    <exon start="45574" stop="45642"/>
                    <exon start="46021" stop="46113"/>
                    <exon start="47274" stop="47392"/>
                    <exon start="48153" stop="48348"/>
                    <exon start="49810" stop="49985"/>
                    <exon start="51437" stop="51566"/>
                    <exon start="52155" stop="52315"/>
                    <exon start="53447" stop="53538"/>
                    <exon start="54701" stop="54809"/>
                    <exon start="55183" stop="55228"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVFCSPMNSTAMASTASLSLRPSSLISDRSHSPCLPPSSSSSFFSGGTRLWAHTKFISISFSSSQKIPGRRFGRLVVAAAADYYSTLGVPKSANSKDIKAAYRRLARQYHPDVNKEPNAPEKFKEIKDAYEILSDDKKRALYDQYGEAGVKSSVGAQAGAYTTNPFDLFETFFGPSMGGFGMDGAGFGTRRRSTVTKGEDLRYDMTLEFSAAIFGAEKDFELSHLETCEVCVGTGAKVGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSVCPNCGGDGEMISEYCRKCSGEGRIRVKKDIKVKIPPGVNKGSILRVAGEGDAGPRGAPPGDLYVYLDIEEIPEIQRDGINLISTVSVGYLDAILGAVVKVKTVDGLTDLQIPPGTQPGDVLVLARKGAPKLNKPSIRGDHLFTIKVSIPKRISVMERELLEELASLTKGSSTRTKTRPAVQQTAKVTETPVGSDSSAAKTDESSSEDRDDPLKKLANFAGSVVNGALKWLRDNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56500" PGL_stop="55823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56500" e_stop="56246"/>
            <exon e_start="56177" e_stop="55823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56500" e_stop="56246" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56177" e_stop="55823" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56500" stop="56246"/>
              <exon start="56177" stop="55823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTGACCCGTTTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG : GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</gDNA_template>
            <first_frame> Q  T  D  P  F  S  S  E  N  M  E  A  T  A  M  R  P  N  A  A  K  L  L  V  N  C  S  T  P  V  S  F  L  Q  P  P  S  A  A  G  V  V  F  L  V  P  K  Y  V  R  L  T  S  S  F  K  T  F  M  I  A  R  A  S  D  P  K  T  D  Q  A  S  P  S  T  D  E  P  G  L  P  F  L  P  Q  :  E  D  S  N  F  L  V  K  L  G  V  G  S  V  A  G  G  A  A  I  K  Y  G  S  V  I  F  S  E  I  T  T  P  N  I  S  L  A  L  F  M  I  T  A  P  M  I  V  A  V  V  L  L  F  L  Q  S  R  T  D  S  T  S  A  *  T  K  L  F  F  F  C  T  K  D  I  S  N  L  Y  Q  M  I  F  I  H  S  F  L  D  F  V  A  P  V  S  Q  L  N  I  Y  T  C  L  I  K  P  *  I  T  Y  I  *  D  P  S  T  I  </first_frame>
            <second_frame>  K  L  T  R  F  L  L  R  T  W  K  L  P  Q  C  D  Q  T  L  P  S  F  W  *  T  A  Q  R  R  C  H  F  F  S  R  R  L  L  P  E  L  S  S  S  F  Q  N  M  F  D  *  L  P  H  L  R  R  S  *  L  P  E  L  P  T  L  K  L  T  K  Q  V  R  A  L  M  N  L  A  F  L  S  Y  R  R :   R  I  R  I  F  W  *  N  W  E  *  V  Q  W  R  E  E  Q  R  *  S  T  E  V  *  F  S  Q  R  *  Q  H  Q  T  F  H  *  L  C  L  *  *  Q  L  R  *  L  L  R  W  C  Y  Y  S  Y  K  A  V  Q  I  Q  L  L  R  E  Q  S  S  S  S  S  V  L  R  T  S  Q  I  C  T  R  *  F  L  Y  I  L  S  W  I  L  *  L  L  C  H  N  *  I  F  T  H  V  *  *  N  L  K  L  H  I  Y  K  I  Q  V  Q  S </second_frame>
            <third_frame>   N  *  P  V  F  F  *  E  H  G  S  Y  R  N  A  T  K  R  C  Q  A  S  G  E  L  L  N  A  G  V  I  S  S  A  A  V  C  C  R  S  C  L  P  R  S  K  I  C  S  I  D  F  L  I  *  D  V  H  D  C  P  S  F  R  P  *  N  *  P  S  K  S  E  H  *  *  T  W  P  S  F  P  T  A   : G  G  F  E  F  F  G  E  T  G  S  R  F  S  G  G  R  S  S  D  K  V  R  K  C  N  F  L  R  D  N  N  T  K  H  F  I  S  S  V  Y  D  N  S  S  D  D  C  C  G  G  A  I  I  L  T  K  P  Y  R  F  N  F  C  V  N  K  A  L  L  L  L  Y  *  G  H  L  K  F  V  P  D  D  F  Y  T  F  F  P  G  F  C  S  S  C  V  T  I  K  Y  L  H  M  F  N  K  T  L  N  Y  I  Y  I  R  S  K  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56500" stop="56246"/>
                    <exon start="56177" stop="55983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTDPFSSENMEATAMRPNAAKLLVNCSTPVSFLQPPSAAGVVFLVPKYVRLTSSFKTFMIARASDPKTDQASPSTDEPGLPFLPQEDSNFLVKLGVGSVAGGAAIKYGSVIFSEITTPNISLALFMITAPMIVAVVLLFLQSRTDSTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57135" PGL_stop="64329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57135" e_stop="57437"/>
            <exon e_start="58025" e_stop="58124"/>
            <exon e_start="58298" e_stop="58451"/>
            <exon e_start="59105" e_stop="59255"/>
            <exon e_start="59319" e_stop="59467"/>
            <exon e_start="60212" e_stop="60312"/>
            <exon e_start="60411" e_stop="60568"/>
            <exon e_start="63802" e_stop="63916"/>
            <exon e_start="64018" e_stop="64329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.542" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57135" e_stop="57437" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57438" i_stop="58024" i_length="587"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58025" e_stop="58124" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.542" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58125" i_stop="58297" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58298" e_stop="58451" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.973">
            <gDNA_intron_boundary i_start="58452" i_stop="59104" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59105" e_stop="59255" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59319" e_stop="59467" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60212" e_stop="60312" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60411" e_stop="60568" e_length="158"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63802" e_stop="63916" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="64018" e_stop="64329" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57135" stop="57437"/>
              <exon start="58025" stop="58124"/>
              <exon start="58298" stop="58451"/>
              <exon start="59105" stop="59255"/>
              <exon start="59319" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57135" stop="57437"/>
              <exon start="58025" stop="58124"/>
              <exon start="58298" stop="58451"/>
              <exon start="59105" stop="59255"/>
              <exon start="59319" stop="59355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAG : GCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAG : GGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAG : CTATACAGAATCAGATCCAGTGAAAATAGCCGTGGACGGTGTAGAAACATTTAAGAAGGAAAATTGTGATCTAATAATTGTGGATACCAGTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACG : AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC : AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG : GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG : GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG : AATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCAAGGACATGATGGGTATGTTTG</gDNA_template>
            <first_frame> N  R  L  A  F  T  N  I  E  V  P  S  *  S  C  *  F  R  *  S  I  S  V  K  M  V  L  A  Q  L  G  G  S  I  S  R  A  L  Q  Q  M  S  N  A  T  I  I  D  E  K  V  L  N  E  C  L  N  E  I  T  R  A  L  L  Q  A  D  V  Q  F  K  L  V  R  D  M  S  T  N  I  K  K  I  V  N  L  E  D  L  A  A  G  H  N  K  R  R  I  I  Q  Q  :  A  V  Y  N  E  L  C  K  I  L  D  P  G  K  P  A  F  T  L  K  K  G  K  P  S  V  V  M  F  V  G  L  Q   : G  S  G  K  T  T  T  C  T  K  Y  A  Y  H  H  Q  K  R  G  W  K  P  A  L  V  C  A  D  T  F  R  A  G  A  F  D  Q  L  K  Q  N  A  T  K  A  K  I  P  F  Y  G  S :   Y  T  E  S  D  P  V  K  I  A  V  D  G  V  E  T  F  K  K  E  N  C  D  L  I  I  V  D  T  S  G  R  H  K  Q  E  A  A  L  F  E  E  M  R  Q  V  S  E  A  T  :  K  P  D  L  V  I  F  V  M  D  S  S  I  G  Q  A  A  F  D  Q  A  Q  A  F  R  Q  S  V  A  V  G  A  V  I  V  T  K  M  D  G  H  A  K  G  G  G  A  L  S  A :   V  A  A  T  K  S  P  V  I  F  I  G  T  G  E  H  M  D  E  F  E  V  F  D  V  K  P  F  V  S  R  L  L   : G  M  G  D  L  S  G  L  V  N  K  I  Q  D  V  V  P  M  D  Q  Q  P  E  L  L  Q  K  L  S  E  G  H  F  T  L  R  I  M  Y  E  Q  F  Q  S  M  L  K  M  G  P  L  G  Q  :  V  F  S  M  L  P  G  F  S  A  E  M  M  P  Q  G  R  E  K  E  S  Q  A  K  F  K  R  Y  M  T  M  M  D  S  M  T  D  E   : E  L  G  S  T  N  P  K  I  L  T  E  S  R  I  M  R  I  A  R  G  S  G  R  L  V  H  E  V  M  E  M  L  E  E  Y  K  R  L  A  K  I  F  S  K  M  K  G  L  K  I  P  K  K  G  D  M  S  S  L  S  R  N  M  N  A  Q  N  M  S  K  V  L  P  P  Q  M  L  K  Q  I  G  G  M  G  G  L  Q  N  L  M  K  Q  M  G  S  A  K  D  M  M  G  M  F  </first_frame>
            <second_frame>  I  D  W  H  S  Q  T  L  K  F  L  H  N  P  V  D  F  V  N  R  S  P  S  R  W  C  *  H  N  *  G  G  A  S  R  V  L  S  S  R  *  A  M  P  Q  S  S  M  K  R  S  S  T  S  A  S  M  R  S  P  V  L  F  Y  R  P  M  F  N  L  S  *  F  V  I  C  Q  Q  I  S  R  R  L  S  I  L  K  I  L  P  L  D  T  T  S  V  G  L  F  N  R :   L  C  I  M  S  S  A  R  Y  W  I  L  G  N  L  H  L  H  L  K  K  G  N  L  V  L  *  C  L  L  V  C  K  :  G  L  E  K  L  Q  R  V  Q  N  M  L  T  T  T  R  K  G  V  G  S  R  L  *  S  V  Q  I  P  S  E  L  V  L  S  I  N  *  S  R  M  L  Q  K  L  K  F  L  F  M  E   : A  I  Q  N  Q  I  Q  *  K  *  P  W  T  V  *  K  H  L  R  R  K  I  V  I  *  *  L  W  I  P  V  G  A  T  N  K  K  Q  L  F  L  K  K  C  D  K  F  L  K  Q  R :   N  R  I  S  *  F  L  L  W  I  V  V  L  D  K  L  L  L  I  K  L  K  H  F  D  K  V  L  R  L  E  P  *  L  L  L  R  W  M  A  M  Q  K  E  V  V  P  *  V   : Q  L  L  Q  L  K  V  Q  S  Y  L  L  E  L  V  N  T  W  T  S  L  K  F  L  M  L  N  H  L  S  A  V  F  *  :  A  W  V  T  C  L  D  W  *  T  R  Y  K  M  W  S  Q  W  I  N  S  L  S  F  F  R  S  Y  Q  K  D  I  L  P  *  G  S  C  T  S  N  F  R  A  C  L  K  W  V  P  L  D  R :   F  F  Q  C  F  L  D  L  V  Q  R  *  C  H  K  V  V  K  R  K  V  K  Q  S  L  K  G  I  *  Q  *  W  T  P  *  L  M  K  :  N  W  A  V  P  I  Q  R  F  *  L  N  L  G  S  C  V  *  L  G  D  L  A  A  S  C  M  R  *  W  R  C  W  K  N  T  N  D  L  P  K  Y  S  A  R  *  R  V  L  R  F  Q  R  R  E  I  *  A  P  C  R  E  T  *  M  H  K  T  *  A  K  S  S  P  L  R  C  *  S  R  S  V  E  W  V  V  C  R  T  *  *  S  K  W  V  P  P  R  T  *  W  V  C  L </second_frame>
            <third_frame>   S  I  G  I  H  K  H  *  S  S  F  I  I  L  L  I  S  L  I  D  L  R  Q  D  G  V  S  T  I  R  G  E  H  L  A  C  S  P  A  D  E  Q  C  H  N  H  R  *  K  G  P  Q  R  V  P  Q  *  D  H  P  C  S  S  T  G  R  C  S  I  *  A  S  S  *  Y  V  N  K  Y  Q  E  D  C  Q  S  *  R  S  C  R  W  T  Q  Q  A  *  D  Y  S  T   : G  C  V  *  *  A  L  Q  D  I  G  S  W  E  T  C  I  Y  T  *  K  R  E  T  *  C  C  N  V  C  W  F  A  R :   V  W  K  N  Y  N  V  Y  K  I  C  L  P  P  P  E  K  G  L  E  A  G  S  S  L  C  R  Y  L  Q  S  W  C  F  R  S  I  E  A  E  C  Y  K  S  *  N  S  F  L  W  K  :  L  Y  R  I  R  S  S  E  N  S  R  G  R  C  R  N  I  *  E  G  K  L  *  S  N  N  C  G  Y  Q  W  A  P  Q  T  R  S  S  S  F  *  R  N  A  T  S  F  *  S  N   : E  T  G  S  R  D  F  C  Y  G  *  *  Y  W  T  S  C  F  *  S  S  S  S  I  S  T  K  C  C  G  W  S  R  D  C  Y  *  D  G  W  P  C  K  R  R  W  C  P  K  C  :  S  C  C  N  *  K  S  S  H  I  Y  W  N  W  *  T  H  G  R  V  *  S  F  *  C  *  T  I  C  Q  P  S  F  R :   H  G  *  L  V  W  I  G  E  Q  D  T  R  C  G  P  N  G  S  T  A  *  A  S  S  E  V  I  R  R  T  F  Y  L  E  D  H  V  R  A  I  S  E  H  A  *  N  G  S  P  W  T   : G  F  F  N  A  S  W  I  *  C  R  D  D  A  T  R  S  *  K  G  K  S  S  K  V  *  K  V  Y  D  N  D  G  L  H  D  *  *  R :   I  G  Q  Y  Q  S  K  D  F  D  *  I  S  D  H  A  Y  S  *  G  I  W  P  P  R  A  *  G  D  G  D  V  G  R  I  Q  T  T  C  Q  N  I  Q  Q  D  E  G  S  *  D  S  K  E  G  R  Y  E  L  P  V  E  K  H  E  C  T  K  H  E  Q  S  P  P  P  S  D  V  E  A  D  R  W  N  G  W  F  A  E  L  N  E  A  N  G  F  R  Q  G  H  D  G  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57192" stop="57437"/>
                    <exon start="58025" stop="58124"/>
                    <exon start="58298" stop="58451"/>
                    <exon start="59105" stop="59255"/>
                    <exon start="59319" stop="59467"/>
                    <exon start="60212" stop="60312"/>
                    <exon start="60411" stop="60568"/>
                    <exon start="63802" stop="63916"/>
                    <exon start="64018" stop="64328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISVKMVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLGQVFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELGSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67014" PGL_stop="64936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67014" e_stop="66831"/>
            <exon e_start="66744" e_stop="66502"/>
            <exon e_start="66279" e_stop="66061"/>
            <exon e_start="65177" e_stop="64936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.107" e_score="0.935"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.991"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="67014" e_stop="66831" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.107">
            <gDNA_intron_boundary i_start="66830" i_stop="66745" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="66744" e_stop="66502" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="66501" i_stop="66280" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="66279" e_stop="66061" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66060" i_stop="65178" i_length="883"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="65177" e_stop="64936" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67014" stop="66831"/>
              <exon start="66744" stop="66502"/>
              <exon start="66279" stop="66061"/>
              <exon start="65177" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGTGGACTTACACAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAG : GCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTTTACGAAGTTCCCACTCAGAACTCAAGCAGGAGCTCAGCAACTTGGCTAAATAGAAGGCAGAAGTTGAA : ATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG : GCCCAGATCCTAGCACAAGATGTTGAAACTACTGTTGCTGGTGGAAATCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGG</gDNA_template>
            <first_frame> H  L  W  T  Y  T  G  Q  R  F  G  N  *  A  *  F  P  K  T  E  W  P  R  E  P  A  A  S  S  S  N  *  E  G  K  I  Y  *  N  A  M  G  Y  G  G  T  *  K  K  V  C  G  D  G  I  E  A  G  G  *  T   : G  *  Q  D  S  D  G  I  N  S  K  N  H  S  T  R  E  *  K  T  V  P  R  I  G  C  C  S  T  A  E  Q  *  L  A  E  T  P  F  G  V  G  V  E  V  Q  H  R  C  Q  T  F  S  Q  G  G  *  I  F  T  K  F  P  L  R  T  Q  A  G  A  Q  Q  L  G  *  I  E  G  R  S  *   : N  D  F  T  G  G  K  A  N  *  G  T  C  Y  R  C  K  Y  *  A  A  A  *  V  *  N  S  S  Q  *  T  G  G  M  Q  C  Q  F  S  H  R  G  R  K  *  T  G  S  E  C  F  Y  P  F  G  C  H  *  Y  A  V  N  I  *  *  S  N  R  S  T  S  C  R   : G  P  D  P  S  T  R  C  *  N  Y  C  C  W  W  K  S  *  W  R  I  F  M  H  N  S  G  *  I  E  E  T  T  S  *  C  V  C  *  Q  C  Q  I  E  E  T  D  E  F  C  H  S  L  C  T  T  N  S  *  *  V  K  G  Q  *  G  R  E  P  F  Y  K  D  S  S  Y  E  V  F  R  W </first_frame>
            <second_frame>  I  C  G  L  T  Q  V  K  D  L  E  I  E  L  D  S  L  K  Q  S  G  Q  E  N  L  Q  Q  A  V  L  T  E  K  E  K  F  T  E  M  Q  W  D  M  E  E  L  R  R  K  C  V  E  M  E  L  K  L  A  A  E  Q  :  A  D  K  I  R  M  E  S  T  Q  R  I  I  V  Q  E  N  E  R  L  Y  Q  E  L  D  A  A  Q  Q  Q  N  N  S  L  Q  K  L  H  L  E  L  E  S  K  S  N  T  D  V  K  L  L  V  K  E  V  K  S  L  R  S  S  H  S  E  L  K  Q  E  L  S  N  L  A  K  *  K  A  E  V  E  :  M  I  L  R  E  E  R  Q  T  R  E  H  A  T  A  A  N  I  K  L  L  H  E  Y  E  I  L  R  S  R  L  E  E  C  S  V  S  F  L  I  E  E  E  N  K  L  V  L  N  A  S  I  P  S  D  A  I  D  M  L  S  T  S  D  D  R  I  G  L  L  L  A  E  :  A  Q  I  L  A  Q  D  V  E  T  T  V  A  G  G  N  L  D  G  E  Y  S  C  T  T  V  D  E  L  R  K  Q  L  A  D  V  Y  V  D  N  A  K  L  R  K  Q  M  N  S  V  I  R  Y  A  L  Q  T  A  S  R  S  K  D  N  E  E  E  N  P  S  T  K  T  A  L  T  K  S  L  D   </second_frame>
            <third_frame>   F  V  D  L  H  R  S  K  I  W  K  L  S  L  I  P  *  N  R  V  A  K  R  T  C  S  K  Q  F  *  L  R  R  K  N  L  L  K  C  N  G  I  W  R  N  L  E  E  S  V  W  R  W  N  *  S  W  R  L  N  R :   L  T  R  F  G  W  N  Q  L  K  E  S  *  Y  K  R  M  K  D  C  T  K  N  W  M  L  L  N  S  R  T  I  A  C  R  N  S  I  W  S  W  S  R  S  P  T  Q  M  S  N  F  *  S  R  R  L  N  L  Y  E  V  P  T  Q  N  S  S  R  S  S  A  T  W  L  N  R  R  Q  K  L  K :   *  F  Y  G  R  K  G  K  L  G  N  M  L  P  L  Q  I  L  S  C  C  M  S  M  K  F  F  A  V  D  W  R  N  A  V  S  V  F  S  S  R  K  K  I  N  W  F  *  M  L  L  S  L  R  M  P  L  I  C  C  Q  H  L  M  I  E  *  V  Y  F  L  Q  R :   P  R  S  *  H  K  M  L  K  L  L  L  L  V  E  I  L  M  E  N  I  H  A  Q  Q  W  M  N  *  G  N  N  *  L  M  C  M  L  T  M  P  N  *  G  N  R  *  I  L  S  F  V  M  H  Y  K  Q  L  V  G  Q  R  T  M  R  K  R  T  L  L  Q  R  Q  L  L  R  S  L  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66516" stop="66502"/>
                    <exon start="66279" stop="66061"/>
                    <exon start="65177" stop="64938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAEVEMILREERQTREHATAANIKLLHEYEILRSRLEECSVSFLIEEENKLVLNASIPSDAIDMLSTSDDRIGLLLAEAQILAQDVETTVAGGNLDGEYSCTTVDELRKQLADVYVDNAKLRKQMNSVIRYALQTASRSKDNEEENPSTKTALTKSLD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67013" stop="66831"/>
                    <exon start="66744" stop="66517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICGLTQVKDLEIELDSLKQSGQENLQQAVLTEKEKFTEMQWDMEELRRKCVEMELKLAAEQADKIRMESTQRIIVQENERLYQELDAAQQQNNSLQKLHLELESKSNTDVKLLVKEVKSLRSSHSELKQELSNLAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="68815" PGL_stop="69051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68815" e_stop="69051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="68815" e_stop="69051" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68815" stop="69051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  L  N  I </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  *  T   </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  F  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0157P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="77499" PGL_stop="77735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77499" e_stop="77735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="77499" e_stop="77735" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77499" stop="77735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  L  N  I </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  *  T   </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  F  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0157P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="83337" PGL_stop="81358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83337" e_stop="82937"/>
            <exon e_start="82381" e_stop="82271"/>
            <exon e_start="81947" e_stop="81849"/>
            <exon e_start="81681" e_stop="81595"/>
            <exon e_start="81426" e_stop="81358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.858" e_score="0.998"/>
          <exon-intron don_prob="0.162" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.919" e_score="1.000"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83337" e_stop="82937" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.858">
            <gDNA_intron_boundary i_start="82936" i_stop="82382" i_length="555"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82381" e_stop="82271" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.162" acc_prob="0.896">
            <gDNA_intron_boundary i_start="82270" i_stop="81948" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81947" e_stop="81849" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81848" i_stop="81682" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81681" e_stop="81595" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.919">
            <gDNA_intron_boundary i_start="81594" i_stop="81427" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="0.826">
            <gDNA_exon_boundary e_start="81426" e_stop="81358" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83337" stop="82937"/>
              <exon start="82381" stop="82271"/>
              <exon start="81947" stop="81849"/>
              <exon start="81681" stop="81595"/>
              <exon start="81426" stop="81358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTAGTAGGTACGGTTCATCGACAGAATCAGGACCGTTAGTTCGCCAGTTGAAGTTAGAAAATTAACACGACGAGAGGCCGTGACGGACCGGCGAGAGAGCTGCCGGAGCAGACAGTAAGGTTTGAAATGTACAAATATAAAATGGACCCTTTGTTACCTGAGATGAACCTCTACGGTAATTACTCATATCTGGATTCGGGATTTAACGATCCCTCTTTCATCGAATCCCTTTCGCTTTCTCACACTTCGTCAATCGTCAACGATGATTTGCTACCGGAGATGATTTCTTCATCGGCTGACAAAGCTAGCAAAGGTCGAAAGAGTCCACCAAAGCACCGGCACGACGGGACCTCGCCGCTTCCTTTAGGGATGGATTGGAGTCCTTCCCCTCGCGTATGG : GATGGACATGATACCATTTGGCCACATGATTCTCATACAGGATGGATTTACTGTGCCACTATTCCTTCTTGGACTATCTCTTTACGCCCCAGAGGTTCAGCTACTGTAGTG : TTTTATAGGGTTCAAATTGGTTTACGATCACCTGATGGGTTCACAACCACGCGAGAGATACTACGAAGATTTAGTGATTTCTTAAAGCTATCTTCAAAG : CTGAAGAAAGAATTTCCAAAGAAAAAGTTGCCCCCTGCTCCTTCAAAGGAACTTCTGAGAATGCAAAGCCATGAACTTTTGGAAGAA : CGTAGGTGTTTATTGGAGGATTGGATGATGAAAGTATTGTCTGACATCGAGTTATCAAGAAGTGCCTCC</gDNA_template>
            <first_frame> R  *  *  V  R  F  I  D  R  I  R  T  V  S  S  P  V  E  V  R  K  L  T  R  R  E  A  V  T  D  R  R  E  S  C  R  S  R  Q  *  G  L  K  C  T  N  I  K  W  T  L  C  Y  L  R  *  T  S  T  V  I  T  H  I  W  I  R  D  L  T  I  P  L  S  S  N  P  F  R  F  L  T  L  R  Q  S  S  T  M  I  C  Y  R  R  *  F  L  H  R  L  T  K  L  A  K  V  E  R  V  H  Q  S  T  G  T  T  G  P  R  R  F  L  *  G  W  I  G  V  L  P  L  A  Y  G :   M  D  M  I  P  F  G  H  M  I  L  I  Q  D  G  F  T  V  P  L  F  L  L  G  L  S  L  Y  A  P  E  V  Q  L  L  *  C :   F  I  G  F  K  L  V  Y  D  H  L  M  G  S  Q  P  R  E  R  Y  Y  E  D  L  V  I  S  *  S  Y  L  Q  S :   *  R  K  N  F  Q  R  K  S  C  P  L  L  L  Q  R  N  F  *  E  C  K  A  M  N  F  W  K  N :   V  G  V  Y  W  R  I  G  *  *  K  Y  C  L  T  S  S  Y  Q  E  V  P   </first_frame>
            <second_frame>  G  S  R  Y  G  S  S  T  E  S  G  P  L  V  R  Q  L  K  L  E  N  *  H  D  E  R  P  *  R  T  G  E  R  A  A  G  A  D  S  K  V  *  N  V  Q  I  *  N  G  P  F  V  T  *  D  E  P  L  R  *  L  L  I  S  G  F  G  I  *  R  S  L  F  H  R  I  P  F  A  F  S  H  F  V  N  R  Q  R  *  F  A  T  G  D  D  F  F  I  G  *  Q  S  *  Q  R  S  K  E  S  T  K  A  P  A  R  R  D  L  A  A  S  F  R  D  G  L  E  S  F  P  S  R  M   : G  W  T  *  Y  H  L  A  T  *  F  S  Y  R  M  D  L  L  C  H  Y  S  F  L  D  Y  L  F  T  P  Q  R  F  S  Y  C  S   : V  L  *  G  S  N  W  F  T  I  T  *  W  V  H  N  H  A  R  D  T  T  K  I  *  *  F  L  K  A  I  F  K   : A  E  E  R  I  S  K  E  K  V  A  P  C  S  F  K  G  T  S  E  N  A  K  P  *  T  F  G  R   : T  *  V  F  I  G  G  L  D  D  E  S  I  V  *  H  R  V  I  K  K  C  L  </second_frame>
            <third_frame>   V  V  G  T  V  H  R  Q  N  Q  D  R  *  F  A  S  *  S  *  K  I  N  T  T  R  G  R  D  G  P  A  R  E  L  P  E  Q  T  V  R  F  E  M  Y  K  Y  K  M  D  P  L  L  P  E  M  N  L  Y  G  N  Y  S  Y  L  D  S  G  F  N  D  P  S  F  I  E  S  L  S  L  S  H  T  S  S  I  V  N  D  D  L  L  P  E  M  I  S  S  S  A  D  K  A  S  K  G  R  K  S  P  P  K  H  R  H  D  G  T  S  P  L  P  L  G  M  D  W  S  P  S  P  R  V  W  :  D  G  H  D  T  I  W  P  H  D  S  H  T  G  W  I  Y  C  A  T  I  P  S  W  T  I  S  L  R  P  R  G  S  A  T  V  V  :  F  Y  R  V  Q  I  G  L  R  S  P  D  G  F  T  T  T  R  E  I  L  R  R  F  S  D  F  L  K  L  S  S  K  :  L  K  K  E  F  P  K  K  K  L  P  P  A  P  S  K  E  L  L  R  M  Q  S  H  E  L  L  E  E  :  R  R  C  L  L  E  D  W  M  M  K  V  L  S  D  I  E  L  S  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83278" stop="82937"/>
                    <exon start="82381" stop="82271"/>
                    <exon start="81947" stop="81849"/>
                    <exon start="81681" stop="81595"/>
                    <exon start="81426" stop="81358"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KINTTRGRDGPARELPEQTVRFEMYKYKMDPLLPEMNLYGNYSYLDSGFNDPSFIESLSLSHTSSIVNDDLLPEMISSSADKASKGRKSPPKHRHDGTSPLPLGMDWSPSPRVWDGHDTIWPHDSHTGWIYCATIPSWTISLRPRGSATVVFYRVQIGLRSPDGFTTTREILRRFSDFLKLSSKLKKEFPKKKLPPAPSKELLRMQSHELLEERRCLLEDWMMKVLSDIELSRSAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="103034" PGL_stop="100353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103034" e_stop="102389"/>
            <exon e_start="101927" e_stop="101737"/>
            <exon e_start="101598" e_stop="101341"/>
            <exon e_start="101187" e_stop="101082"/>
            <exon e_start="100827" e_stop="100742"/>
            <exon e_start="100645" e_stop="100353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103034" e_stop="102389" e_length="646"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101737" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101736" i_stop="101599" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101598" e_stop="101341" e_length="258"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="101340" i_stop="101188" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101187" e_stop="101082" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.767">
            <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100827" e_stop="100742" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.962">
            <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="100645" e_stop="100353" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103034" stop="102389"/>
              <exon start="101927" stop="101737"/>
              <exon start="101598" stop="101341"/>
              <exon start="101187" stop="101082"/>
              <exon start="100827" stop="100742"/>
              <exon start="100645" stop="100353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTGCTATAGTTTTTAGCTATCCCCAAAAAAAGTTGCAGAATTTTATGATAACACTCAAATGGCTGCCTCTACTACTCTACTATCTAACTCCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG : AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT : GTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAG : GGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG : CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG : TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAA</gDNA_template>
            <first_frame> L  L  L  *  F  L  A  I  P  K  K  S  C  R  I  L  *  *  H  S  N  G  C  L  Y  Y  S  T  I  *  L  H  F  S  F  L  C  *  S  T  *  F  S  C  N  P  C  H  K  C  T  F  L  E  P  Q  S  I  F  S  R  Q  K  I  R  E  F  L  P  Q  C  Q  E  K  K  S  M  A  *  P  F  *  L  W  *  *  S  *  N  G  I  W  F  T  F  F  *  R  E  T  R  *  R  S  K  A  T  *  *  S  *  *  P  I  W  I  S  Q  I  P  N  G  I  L  C  *  D  C  F  V  G  F  E  N  *  R  *  C  S  E  M  L  L  C  Y  *  W  W  G  L  *  E  F  A  V  L  S  S  N  S  D  D  *  G  *  V  P  W  C  S  S  G  Y  T  C  N  S  Q  G  K  T  D  I  *  D  E  *  K  C  E  V  G  *  C  L  *  S  G  *  *  F  S  *  T  S  *  V  Y  G  Y  A  W  N  S  *   : E  *  V  L  *  Y  D  L  V  N  Q  T  G  R  D  W  T  C  S  I  F  V  Y  V  D  C  S  *  Q  S  *  L  H  L  P  K  C  E  F  C  R  S  R  I  V  S  V  R  N  F  Y  T  R  K  H  E  P  L  R  G  R  I  S  Y  :  V  P  S  D  G  *  L  V  G  Q  T  S  S  *  S  T  S  T  T  F  T  P  T  *  S  F  N  L  K  K  G  *  G  G  C  R  G  K  I  *  E  C  W  C  T  E  R  Q  I  Y  C  D  S  W  D  *  I  R  F  K  S  F  Y  A  V  K  G  *  Y  *  *  L  A  P  Y  *  D  L  G  *  D  S  R  G  D  K  :  G  S  Q  A  S  F  C  H  S  T  R  K  R  K  R  K  C  G  R  C  S  W  L  R  C  *  Y  S  V  H  N  H  P  W  T   : A  C  C  S  C  *  *  L  C  W  S  D  S  Y  K  Y  S  C  D  T  T  C  S  R  T  W  K  T  K  :  Y  W  A  I  L  L  *  G  *  G  Q  K  F  C  S  Q  C  R  S  K  E  M  C  N  Y  F  I  K  Y  W  K  I  G  *  Y  *  C  *  S  C  E  E  C  C  S  N  F  H  H  A  P  S  N  L  L  N  I  I  H  P  P  V  L  L  H  I  V  I  K  Y  S  C  N  C  Y  *  F  H  F  L  L  N  C  N  *  *  K  R  K  Y  I  Y  S  F  F  F  L   </first_frame>
            <second_frame>  F  C  Y  S  F  *  L  S  P  K  K  V  A  E  F  Y  D  N  T  Q  M  A  A  S  T  T  L  L  S  N  S  I  S  P  F  F  A  N  P  P  N  F  P  V  T  H  V  T  N  V  P  F  L  N  H  N  P  S  F  P  A  R  K  S  G  N  F  C  L  N  A  K  K  K  N  P  W  L  D  P  F  D  Y  G  D  D  P  E  M  E  Y  G  S  L  F  S  E  G  K  Q  D  E  D  P  R  P  P  D  N  P  D  N  P  Y  G  F  L  K  F  P  M  G  Y  S  V  E  I  A  S  L  G  L  K  I  R  G  D  V  R  R  C  C  C  V  I  D  G  G  V  Y  E  N  L  L  F  F  P  V  I  Q  M  I  K  D  R  Y  P  G  V  Q  V  D  I  L  A  T  A  R  G  K  Q  T  F  E  M  N  K  N  V  R  W  A  N  A  Y  D  L  D  D  D  F  P  E  P  A  E  Y  T  D  M  L  G  I  L  K  :  S  R  Y  Y  D  M  I  L  S  T  K  L  A  G  I  G  H  A  V  F  L  F  M  S  T  A  R  D  R  V  S  Y  I  Y  P  N  V  N  S  A  G  A  G  L  F  L  S  E  T  F  T  P  E  S  M  N  L  S  E  G  G  Y  H  M :   Y  R  Q  M  V  D  W  L  G  R  P  A  R  K  V  P  R  Q  P  L  P  P  L  K  V  S  I  S  R  K  V  R  E  V  V  E  A  K  Y  K  N  V  G  A  Q  K  G  K  Y  I  V  I  H  G  I  K  S  D  S  K  A  S  M  Q  S  R  G  D  I  D  S  L  L  P  I  E  I  W  A  E  I  A  E  E  I  R :   G  V  K  P  V  F  V  I  P  H  E  K  E  R  E  N  V  E  D  A  V  G  Y  D  A  S  I  V  F  I  T  T  P  G  Q  :  L  A  A  L  V  D  D  S  A  G  V  I  A  T  N  T  A  A  I  Q  L  A  H  A  R  G  K  P  S :   I  G  L  F  C  S  E  D  K  A  R  S  F  V  P  N  A  E  A  K  K  C  A  T  I  S  S  N  T  G  K  L  V  D  I  D  V  E  A  V  K  S  A  V  Q  I  F  T  M  P  L  A  I  F  *  I  L  Y  I  L  Q  F  S  Y  I  *  *  L  S  I  P  V  I  V  T  S  S  I  F  F  S  I  V  I  N  R  S  G  N  I  Y  I  R  S  F  F  S  </second_frame>
            <third_frame>   S  A  I  V  F  S  Y  P  Q  K  K  L  Q  N  F  M  I  T  L  K  W  L  P  L  L  L  Y  Y  L  T  P  F  L  L  S  L  L  I  H  L  I  F  L  *  P  M  S  Q  M  Y  L  S  *  T  T  I  H  L  F  P  P  E  N  Q  G  I  F  A  S  M  P  R  K  K  I  H  G  L  T  L  L  T  M  V  M  I  L  K  W  N  M  V  H  F  F  L  K  G  N  K  M  K  I  Q  G  H  L  I  I  L  I  T  H  M  D  F  S  N  S  Q  W  D  T  L  L  R  L  L  R  W  V  *  K  L  E  V  M  F  G  D  V  V  V  L  L  M  V  G  F  M  R  I  C  C  S  F  Q  *  F  R  *  L  R  I  G  T  L  V  F  K  W  I  Y  L  Q  Q  P  G  E  N  R  H  L  R  *  I  K  M  *  G  G  L  M  P  M  I  W  M  M  I  F  L  N  Q  L  S  I  R  I  C  L  E  F  L  R :   V  G  T  M  I  *  S  C  Q  P  N  W  Q  G  L  D  M  Q  Y  F  C  L  C  R  L  L  V  T  E  L  A  T  F  T  Q  M  *  I  L  Q  E  Q  D  C  F  C  Q  K  L  L  H  Q  K  A  *  T  S  P  R  A  D  I  I   : C  T  V  R  W  L  I  G  W  A  D  Q  L  V  K  Y  L  D  N  L  Y  P  H  L  K  F  Q  S  Q  E  R  L  G  R  L  *  R  Q  N  I  R  M  L  V  H  R  K  A  N  I  L  *  F  M  G  L  N  Q  I  Q  K  L  L  C  S  Q  G  V  I  L  I  A  C  S  L  L  R  F  G  L  R  *  Q  R  R  *   : G  E  S  S  Q  F  L  S  F  H  T  K  K  K  E  K  M  W  K  M  Q  L  V  T  M  L  V  *  C  S  *  P  P  L  D  S :   L  L  L  L  L  M  T  L  L  E  *  *  L  Q  I  Q  L  R  Y  N  L  L  T  H  V  E  N  Q   : V  L  G  Y  S  A  L  R  I  R  P  E  V  L  F  P  M  Q  K  Q  R  N  V  Q  L  F  H  Q  I  L  E  N  W  L  I  L  M  L  K  L  *  R  V  L  F  K  F  S  P  C  P  *  Q  S  S  K  Y  Y  T  S  S  S  S  L  T  Y  S  N  *  V  F  L  *  L  L  L  V  P  F  S  S  Q  L  *  L  I  E  A  E  I  Y  I  F  V  L  F  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103015" stop="102389"/>
                    <exon start="101927" stop="101737"/>
                    <exon start="101598" stop="101341"/>
                    <exon start="101187" stop="101082"/>
                    <exon start="100827" stop="100742"/>
                    <exon start="100645" stop="100480"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPKKVAEFYDNTQMAASTTLLSNSISPFFANPPNFPVTHVTNVPFLNHNPSFPARKSGNFCLNAKKKNPWLDPFDYGDDPEMEYGSLFSEGKQDEDPRPPDNPDNPYGFLKFPMGYSVEIASLGLKIRGDVRRCCCVIDGGVYENLLFFPVIQMIKDRYPGVQVDILATARGKQTFEMNKNVRWANAYDLDDDFPEPAEYTDMLGILKSRYYDMILSTKLAGIGHAVFLFMSTARDRVSYIYPNVNSAGAGLFLSETFTPESMNLSEGGYHMYRQMVDWLGRPARKVPRQPLPPLKVSISRKVREVVEAKYKNVGAQKGKYIVIHGIKSDSKASMQSRGDIDSLLPIEIWAEIAEEIRGVKPVFVIPHEKERENVEDAVGYDASIVFITTPGQLAALVDDSAGVIATNTAAIQLAHARGKPSIGLFCSEDKARSFVPNAEAKKCATISSNTGKLVDIDVEAVKSAVQIFTMPLAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102538" e_stop="101923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="102538" e_stop="101923" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102538" stop="101923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAG</gDNA_template>
            <first_frame> Y  P  G  V  Q  V  D  I  L  A  T  A  R  G  K  Q  T  F  E  M  N  K  N  V  R  W  A  N  A  Y  D  L  D  D  D  F  P  E  P  A  E  Y  T  D  M  L  G  I  L  K  V  S  C  R  S  I  N  I  N  I  D  S  *  L  F  K  F  Y  V  A  W  T  L  Q  K  C  *  F  *  S  A  L  L  L  E  V  S  D  T  H  *  S  T  S  N  I  G  L  S  K  L  F  H  L  K  Y  D  S  C  R  A  L  M  Y  *  H  L  K  L  E  K  V  T  N  I  I  W  K  L  S  *  I  R  R  F  N  Y  G  Y  L  M  S  L  Q  I  I  Q  K  L  S  R  L  R  L  E  K  E  S  L  R  L  A  S  R  C  C  S  S  C  L  V  R  *  R  *  K  N  L  L  P  A  L  *  I  E  S  Y  S  H  F  F  G  L  S  Y  L  L  *  C  M  V  C  C  R  V  </first_frame>
            <second_frame>  T  L  V  F  K  W  I  Y  L  Q  Q  P  G  E  N  R  H  L  R  *  I  K  M  *  G  G  L  M  P  M  I  W  M  M  I  F  L  N  Q  L  S  I  R  I  C  L  E  F  L  R  F  H  A  V  P  L  T  L  T  S  I  H  N  Y  L  N  S  T  L  L  G  L  F  K  N  V  D  F  K  V  H  Y  F  W  K  Y  P  T  H  I  N  L  R  A  T  *  V  *  A  S  C  F  I  *  S  M  I  L  V  V  P  *  C  I  S  T  *  N  *  R  K  *  Q  T  L  Y  G  N  L  V  K  Y  E  D  L  T  M  V  I  L  *  V  C  R  *  F  K  S  *  A  D  Y  V  W  K  K  N  R  L  D  *  L  Q  D  A  V  R  L  V  *  S  D  R  D  K  R  I  C  F  L  H  Y  E  *  R  V  I  V  I  F  L  G  *  V  I  C  F  N  A  W  F  V  A  E  * </second_frame>
            <third_frame>   P  W  C  S  S  G  Y  T  C  N  S  Q  G  K  T  D  I  *  D  E  *  K  C  E  V  G  *  C  L  *  S  G  *  *  F  S  *  T  S  *  V  Y  G  Y  A  W  N  S  *  G  F  M  P  F  H  *  H  *  H  R  F  I  I  I  *  I  L  R  C  L  D  S  S  K  M  L  I  L  K  C  I  T  F  G  S  I  R  H  T  L  I  Y  E  Q  H  R  F  K  Q  V  V  S  F  E  V  *  F  L  S  C  L  D  V  L  A  P  K  I  R  E  S  N  K  H  Y  M  E  T  *  L  N  T  K  I  *  L  W  L  S  Y  E  F  A  D  N  S  K  V  E  Q  T  T  F  G  K  R  I  A  *  I  S  F  K  M  L  F  V  L  F  S  Q  I  E  I  K  E  F  A  S  C  I  M  N  R  E  L  *  S  F  F  W  A  K  L  F  A  L  M  H  G  L  L  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102465" stop="102250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLMPMIWMMIFLNQLSIRICLEFLRFHAVPLTLTSIHNYLNSTLLGLFKNVDFKVHYFWKYPTHINLRAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="105982" PGL_stop="112635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105982" e_stop="106736"/>
            <exon e_start="110705" e_stop="110762"/>
            <exon e_start="110856" e_stop="110939"/>
            <exon e_start="111050" e_stop="111191"/>
            <exon e_start="112116" e_stop="112635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.785" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.715" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.899" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="105982" e_stop="106736" e_length="755"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.785">
            <gDNA_intron_boundary i_start="106737" i_stop="110704" i_length="3968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110705" e_stop="110762" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="110763" i_stop="110855" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110856" e_stop="110939" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.715" acc_prob="0.972">
            <gDNA_intron_boundary i_start="110940" i_stop="111049" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111050" e_stop="111191" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.899">
            <gDNA_intron_boundary i_start="111192" i_stop="112115" i_length="924"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112635" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105982" stop="106736"/>
              <exon start="110705" stop="110762"/>
              <exon start="110856" stop="110939"/>
              <exon start="111050" stop="111191"/>
              <exon start="112116" stop="112635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGAAAAGCCTGTTAAGAAGGCTGCTGAAAGTGAAGAGTCTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCAATCACGGGCGAGGAAATGTGGAGGAGCTGTGCCGTCTATTTTGAGACAGCAACAGGACCATAGGTCATTGATGATGAGGCCTAATTTGTCGCTGAATGCATCTTGTTCGTCGGATGCTTCGACGGATTCTTCTCATAGCCGAGCATCGACGACAGGGAAAATGAGCCGTGGTAGTGTGACGCCGACGGCTGGAAGAAGGAAGCAATGTAGTAGTCCGAAAGTGGTGAAGTCTGAGAAAATTGGAAAAACTGTTGGCGAAGGTGAGAGCTTGGCTTCAAGTCCCACTCCGGATGATGCTTCGGTGATGAAGAAAAGGTGTGCTTGGGTGACCCCAAATACTG : ATCCATCCTATGCTGCTTTTCATGACGAGGAATGGGGAGTTTCAGTCCACGATGACAA : GAAGCTCTTTGAACTTCTCAGTTTATGCACTGCATTAGCTGAACTCTCATGGCCGGCAATTCTCAGTAAAAGACATATGTTTAG : AGAAGTCTTTCAAAATTTTGACCCAGTTGCAGTCTCAAAACTAAATGAGAAGAAGATAGCACCACCAGGAAGTCCTGCCAGCACTCTTTTATCAGAGGTAAAGCTACGGGCAGTTATTGAAAATGCACGCCAAACGTGTAAG : ATCATCGATGAACTTGGATCCTTCGACAAATACATATGGGGTTTTGTGAATAACAAACCTATAGTTAGTCAATTCCGATATGCAAGGCAGGTGCCAATGAAGACATCGAAAGCTGAAGGGATAAGTAAAGACCTAGTTAAAAGAGGATTCAGAGGAGTTGGACCTACTGTTGTGTACTCATTCATGCAAGTAGCTGGTATCACAAACGACCATCTCATCAGTTGCTTCAGATTTCATGATTGTGTAGCTGCAACCGATGGAACGGATAAAGATGATGGCCTTGCAGCCAAGACAGAAGTGAAGCAACTACAACTCAAGGATGAAACTGAGATGGGTCTTATAAGAGCTATTGACGACTTCAATTTATCGACATAGTGAAATGTGTTCAGAGTAGTAGTTCAATGTAATTTATACTCCTAGTAGATTTGGTAGCTTTGCGCCCTTGGTTGCGATACAGTTGAAAGGGCGGCAAGTGCTTGTGTACAAATGACCTTGCTTATTATTATTTTACCATTGCTGT</gDNA_template>
            <first_frame> S  Q  I  G  Q  S  P  F  S  Q  *  I  L  L  A  D  N  V  S  A  L  S  L  L  R  V  L  I  L  Y  F  P  V  H  T  I  T  M  H  L  L  F  P  F  T  V  L  L  F  N  P  S  *  A  Q  L  K  K  I  H  A  K  F  N  E  F  L  V  T  R  S  C  N  C  F  N  V  W  R  T  *  G  *  I  D  E  Q  C  *  F  *  S  P  I  S  A  R  A  G  G  *  Q  G  *  I  R  *  I  T  K  A  R  *  K  A  C  *  E  G  C  *  K  *  R  V  *  G  *  E  I  *  G  N  G  F  R  A  A  I  T  G  E  E  M  W  R  S  C  A  V  Y  F  E  T  A  T  G  P  *  V  I  D  D  E  A  *  F  V  A  E  C  I  L  F  V  G  C  F  D  G  F  F  S  *  P  S  I  D  D  R  E  N  E  P  W  *  C  D  A  D  G  W  K  K  E  A  M  *  *  S  E  S  G  E  V  *  E  N  W  K  N  C  W  R  R  *  E  L  G  F  K  S  H  S  G  *  C  F  G  D  E  E  K  V  C  L  G  D  P  K  Y  * :   S  I  L  C  C  F  S  *  R  G  M  G  S  F  S  P  R  *  Q  :  E  A  L  *  T  S  Q  F  M  H  C  I  S  *  T  L  M  A  G  N  S  Q  *  K  T  Y  V  *  :  R  S  L  S  K  F  *  P  S  C  S  L  K  T  K  *  E  E  D  S  T  T  R  K  S  C  Q  H  S  F  I  R  G  K  A  T  G  S  Y  *  K  C  T  P  N  V  *   : D  H  R  *  T  W  I  L  R  Q  I  H  M  G  F  C  E  *  Q  T  Y  S  *  S  I  P  I  C  K  A  G  A  N  E  D  I  E  S  *  R  D  K  *  R  P  S  *  K  R  I  Q  R  S  W  T  Y  C  C  V  L  I  H  A  S  S  W  Y  H  K  R  P  S  H  Q  L  L  Q  I  S  *  L  C  S  C  N  R  W  N  G  *  R  *  W  P  C  S  Q  D  R  S  E  A  T  T  T  Q  G  *  N  *  D  G  S  Y  K  S  Y  *  R  L  Q  F  I  D  I  V  K  C  V  Q  S  S  S  S  M  *  F  I  L  L  V  D  L  V  A  L  R  P  W  L  R  Y  S  *  K  G  G  K  C  L  C  T  N  D  L  A  Y  Y  Y  F  T  I  A   </first_frame>
            <second_frame>  P  R  S  D  S  H  H  F  L  N  K  F  F  S  P  I  M  Y  L  L  S  H  S  L  G  F  *  F  S  T  F  R  S  I  Q  L  Q  C  T  F  F  F  P  S  L  S  C  S  S  T  L  A  K  H  S  *  R  K  F  M  L  S  S  T  N  F  *  L  L  G  V  V  I  V  S  M  S  G  G  P  R  V  K  L  M  N  N  A  D  S  E  V  R  S  V  L  G  P  A  G  N  K  A  R  S  V  E  L  R  K  P  V  E  K  P  V  K  K  A  A  E  S  E  E  S  K  G  K  K  F  E  G  T  D  S  V  P  Q  S  R  A  R  K  C  G  G  A  V  P  S  I  L  R  Q  Q  Q  D  H  R  S  L  M  M  R  P  N  L  S  L  N  A  S  C  S  S  D  A  S  T  D  S  S  H  S  R  A  S  T  T  G  K  M  S  R  G  S  V  T  P  T  A  G  R  R  K  Q  C  S  S  P  K  V  V  K  S  E  K  I  G  K  T  V  G  E  G  E  S  L  A  S  S  P  T  P  D  D  A  S  V  M  K  K  R  C  A  W  V  T  P  N  T   : D  P  S  Y  A  A  F  H  D  E  E  W  G  V  S  V  H  D  D  K :   K  L  F  E  L  L  S  L  C  T  A  L  A  E  L  S  W  P  A  I  L  S  K  R  H  M  F  R :   E  V  F  Q  N  F  D  P  V  A  V  S  K  L  N  E  K  K  I  A  P  P  G  S  P  A  S  T  L  L  S  E  V  K  L  R  A  V  I  E  N  A  R  Q  T  C  K  :  I  I  D  E  L  G  S  F  D  K  Y  I  W  G  F  V  N  N  K  P  I  V  S  Q  F  R  Y  A  R  Q  V  P  M  K  T  S  K  A  E  G  I  S  K  D  L  V  K  R  G  F  R  G  V  G  P  T  V  V  Y  S  F  M  Q  V  A  G  I  T  N  D  H  L  I  S  C  F  R  F  H  D  C  V  A  A  T  D  G  T  D  K  D  D  G  L  A  A  K  T  E  V  K  Q  L  Q  L  K  D  E  T  E  M  G  L  I  R  A  I  D  D  F  N  L  S  T  *  *  N  V  F  R  V  V  V  Q  C  N  L  Y  S  *  *  I  W  *  L  C  A  L  G  C  D  T  V  E  R  A  A  S  A  C  V  Q  M  T  L  L  I  I  I  L  P  L  L  </second_frame>
            <third_frame>   P  D  R  T  V  T  I  F  S  I  N  S  S  R  R  *  C  I  C  S  L  T  P  *  G  F  N  S  L  L  S  G  P  Y  N  Y  N  A  P  S  F  S  L  H  C  L  A  L  Q  P  *  L  S  T  V  E  E  N  S  C  *  V  Q  R  I  S  S  Y  *  E  L  *  L  F  Q  C  L  E  D  L  G  L  N  *  *  T  M  L  I  L  K  S  D  Q  C  S  G  R  R  V  T  R  L  D  P  L  N  Y  E  S  P  L  K  S  L  L  R  R  L  L  K  V  K  S  L  R  V  R  N  L  R  E  R  I  P  C  R  N  H  G  R  G  N  V  E  E  L  C  R  L  F  *  D  S  N  R  T  I  G  H  *  *  *  G  L  I  C  R  *  M  H  L  V  R  R  M  L  R  R  I  L  L  I  A  E  H  R  R  Q  G  K  *  A  V  V  V  *  R  R  R  L  E  E  G  S  N  V  V  V  R  K  W  *  S  L  R  K  L  E  K  L  L  A  K  V  R  A  W  L  Q  V  P  L  R  M  M  L  R  *  *  R  K  G  V  L  G  *  P  Q  I  L  :  I  H  P  M  L  L  F  M  T  R  N  G  E  F  Q  S  T  M  T   : R  S  S  L  N  F  S  V  Y  A  L  H  *  L  N  S  H  G  R  Q  F  S  V  K  D  I  C  L   : E  K  S  F  K  I  L  T  Q  L  Q  S  Q  N  *  M  R  R  R  *  H  H  Q  E  V  L  P  A  L  F  Y  Q  R  *  S  Y  G  Q  L  L  K  M  H  A  K  R  V  R :   S  S  M  N  L  D  P  S  T  N  T  Y  G  V  L  *  I  T  N  L  *  L  V  N  S  D  M  Q  G  R  C  Q  *  R  H  R  K  L  K  G  *  V  K  T  *  L  K  E  D  S  E  E  L  D  L  L  L  C  T  H  S  C  K  *  L  V  S  Q  T  T  I  S  S  V  A  S  D  F  M  I  V  *  L  Q  P  M  E  R  I  K  M  M  A  L  Q  P  R  Q  K  *  S  N  Y  N  S  R  M  K  L  R  W  V  L  *  E  L  L  T  T  S  I  Y  R  H  S  E  M  C  S  E  *  *  F  N  V  I  Y  T  P  S  R  F  G  S  F  A  P  L  V  A  I  Q  L  K  G  R  Q  V  L  V  Y  K  *  P  C  L  L  L  F  Y  H  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106184" stop="106736"/>
                    <exon start="110705" stop="110762"/>
                    <exon start="110856" stop="110939"/>
                    <exon start="111050" stop="111191"/>
                    <exon start="112116" stop="112490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLGVVIVSMSGGPRVKLMNNADSEVRSVLGPAGNKARSVELRKPVEKPVKKAAESEESKGKKFEGTDSVPQSRARKCGGAVPSILRQQQDHRSLMMRPNLSLNASCSSDASTDSSHSRASTTGKMSRGSVTPTAGRRKQCSSPKVVKSEKIGKTVGEGESLASSPTPDDASVMKKRCAWVTPNTDPSYAAFHDEEWGVSVHDDKKLFELLSLCTALAELSWPAILSKRHMFREVFQNFDPVAVSKLNEKKIAPPGSPASTLLSEVKLRAVIENARQTCKIIDELGSFDKYIWGFVNNKPIVSQFRYARQVPMKTSKAEGISKDLVKRGFRGVGPTVVYSFMQVAGITNDHLISCFRFHDCVAATDGTDKDDGLAAKTEVKQLQLKDETEMGLIRAIDDFNLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="116028" PGL_stop="113589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116027" e_stop="115867"/>
            <exon e_start="115788" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="0.969"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="116027" e_stop="115867" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115788" e_stop="115726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114321" e_stop="113589" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116027" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114925" stop="114830"/>
              <exon start="114321" stop="114260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCCAAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT</gDNA_template>
            <first_frame> A  S  K  L  Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F </first_frame>
            <second_frame>  L  P  N  F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : K  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D   </second_frame>
            <third_frame>   F  Q  T  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115788" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114946" e_stop="113857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="113857" e_length="1090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="113857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTC</gDNA_template>
            <first_frame> I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  V  L  L  I  R  T  T  F  R  A  *  *  T  V  F  T  L  P  *  C  N  E  T  V  *  F  *  S  L  I  N  N  F  T  L  S  *  C  N  R  R  C  I  L  K  S  M  K  Y  P  K  S  F  S  I  R  K  Q  L  N  K  *  K  *  F  N  N  *  V  T  Q  L  S  L  K  L  L  S  S  S  S  C  S  F  Q  I  F  Y  V  F  G  G  Q  N  S  Q  P  H  F  Y  *  I  K  L  N  L  I  I  I  F  N  L  N  *  L  *  S  T  I  I  P  F  T  S  K  G  *  N  *  K  N  R  *  N  F  T  Y  F  E  F  N  T  C  S  R  S  R  I  C  L  F  F  P  H  S  Y  M  H  F  L  T  M  N  Y  V  I  F  L  S  G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  </first_frame>
            <second_frame>  *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R  Y  Y  *  F  V  Q  L  L  E  H  N  E  Q  F  L  R  F  H  S  V  T  R  R  C  N  F  R  A  *  *  T  I  L  R  S  H  S  V  T  D  G  V  Y  *  K  V  *  N  I  P  S  H  F  R  L  G  N  N  S  T  S  R  S  N  L  I  I  R  *  P  N  F  R  *  S  Y  L  V  L  V  V  A  A  S  R  Y  F  M  Y  L  V  A  R  I  H  S  H  I  F  I  R  L  N  *  T  *  L  L  F  S  T  *  T  S  C  R  V  L  L  S  P  L  L  A  R  V  K  T  E  K  I  D  K  I  S  L  I  L  N  S  I  H  V  L  D  R  E  F  V  F  F  F  P  T  V  I  C  I  F  *  Q  *  T  T  *  Y  F  C  Q  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F </second_frame>
            <third_frame>   S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K  G  T  T  N  S  Y  N  F  *  S  I  M  N  S  F  Y  A  S  I  V  *  R  D  G  V  I  L  E  P  N  K  Q  F  Y  A  L  I  V  *  Q  T  V  Y  T  K  K  Y  E  I  S  Q  V  I  F  D  *  E  T  T  Q  Q  V  E  V  I  *  *  L  G  N  P  T  F  V  E  V  T  *  F  *  *  L  Q  L  P  D  I  L  C  I  W  W  P  E  F  T  A  T  F  L  L  D  *  T  E  L  N  Y  Y  F  Q  L  E  L  V  V  E  Y  Y  Y  P  L  Y  *  Q  G  L  K  L  K  K  *  I  K  F  H  L  F  *  I  Q  Y  M  F  *  I  A  N  L  S  F  F  S  P  Q  L  Y  A  F  S  N  N  E  L  R  D  I  F  V  R  F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114333" stop="113893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFCQVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116028" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.997"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="116028" e_stop="115726" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116028" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTCCAAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</gDNA_template>
            <first_frame> S  F  Q  T  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  V  C  G  K  R  Y  N  F  F  F  V  L  N  I  I  I  L  M  *  *  F  D  F  S  L  Q  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L </first_frame>
            <second_frame>  A  S  K  L  Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q  Y  V  E  S  D  I  I  F  F  L  F  S  I  *  L  F  *  C  D  D  L  I  F  R  C  R  N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L   </second_frame>
            <third_frame>   L  P  N  F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T  S  M  W  K  A  I  *  F  F  F  C  S  Q  Y  N  Y  F  D  V  M  I  *  F  F  V  A  E  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115806" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDFSLQKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 59 chains have been computed
$ 
$ memory statistics:
$ 82440 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 3297 bytes was the average size of a spliced alignment
$ 24608 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1640 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 62 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:51:22
-->
