<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:44:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373231" ref_strand="+" ref_description="SGN-E373231 [TUS-31-D11]">
      <seq>taatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggatttggagaagcaaggtttctatcaattcattcgtgatacttatgtgatccatccagtcgcccttggagctctgttgtatgcaatgggaggattcccttacattgtttggggcatgggggtgagaattgtgtgggtataccacataacttggctagtaaattcagcatgccatgtatggggaaagcaggcgtggaatactggtgacttatcaaggaacaactggtgggtggcattgcttgcatttggagaaggttggcacaacaaccaccacgcgtttgagtattcagccaggcatggattaaaatggtggcaacttgacatgacttggtatgtagtacgatttcttcaagctattggattggccactgatgtcaagttacccactgatactcataaacagaggctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2142" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1842" g_stop="1724" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="260" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1272" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="401" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1271" i_stop="479" i_length="793">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="478" g_stop="372" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="508" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="371" i_stop="286" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="285" g_stop="100" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="694" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E373231" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1842" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1272"/>
          <exon e_start="478" e_stop="372"/>
          <exon e_start="285" e_stop="100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATTCCCTTACATTGTTTGGGGCATGGTAAGTGGAACTTTTCTTAGTTTCATGGAGAAAGCTTTCATTTTCCCTTTTTAACATTTTGGGAAAACTATTAATTGGGGTAAAAGGAAGAATTGGTTGATAAAAATTACATTTTTTCCACGTAAAACTACCATAAAGATTCAAATATCATGTATACAGATGAGGAAATACAGTTTACAGCTTGGGTATGTAAGATATTACTAAGCAAGCTTTGTTATCTGTTAAAATCTCCAAATGTGTTTGTATATGTCCACCCTCTTAACTCAAGTTGTGCCCCGATTTTGTGTATTGTATTTTCTTTATGCGTCAAATCTCCCAATGGCAAGTTGTGAATCAATTTTGTGGAAGAAAACTGTAGTTGCATCTCTCATTATAGACTACTGTTTCTGCATGTGTCAAATCTCCTAATGGTTTTGGATCTTTTTCCCGGCCTAACTCAAGTTGTAAGCCAATTTTGTGGAAGAAAGTTGTTGTGTTATCAGTTGGTAGGGTCTTTTGTTTTCTTAACGAACTACTGGACAAAATCAAGTGCTAATTTGTTGCTGTTCCATACAACATGTCCTTTGGATCTCACTGGCAATTGATTGATGTTTGATGATAGTGATGTCCTTCGAGGGTAAAAGAAATAGTTCTAGTACCTTTTAAGGAATTGATCAGCATGGCTATCAGAAATCAAACTTAAAACTAGTATTTGGGTGATTATCCGATAGTAACATAGGCAAAATTCTGAGTTCTATGCATTTGGTGCAATGAGATTCTGAAAATTCAACTGCTAAACTCACTGCGTGTGCAGGGGGTGAGAATTGTGTGGGTATACCACATAACTTGGCTAGTAAATTCAGCATGCCATGTATGGGGAAAGCAGGCGTGGAATACTGGTGACTTATCAAGGAACAACTGGTAAGTATAAAAGTTTTAAAATTTATTTGTCTTGTTGCTTCTTTTCTTTTTGTCCATTTTTGGGGACTCAATTTTGTATAATATAGGTGGGTGGCATTGCTTGCATTTGGAGAAGGTTGGCACAACAACCACCACGCGTTTGAGTATTCAGCCAGGCATGGATTAAAATGGTGGCAACTTGACATGACTTGGTATGTAGTACGATTTCTTCAAGCTATTGGATTGGCCACTGATGTCAAGTTACCAACTGATACTCATAAACAGAGGCTGGC</genome_strand>
        <mrna_strand>TAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATTCCCTTACATTGTTTGGGGCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAGAATTGTGTGGGTATACCACATAACTTGGCTAGTAAATTCAGCATGCCATGTATGGGGAAAGCAGGCGTGGAATACTGGTGACTTATCAAGGAACAACTG......................................................................................GTGGGTGGCATTGCTTGCATTTGGAGAAGGTTGGCACAACAACCACCACGCGTTTGAGTATTCAGCCAGGCATGGATTAAAATGGTGGCAACTTGACATGACTTGGTATGTAGTACGATTTCTTCAAGCTATTGGATTGGCCACTGATGTCAAGTTACCCACTGATACTCATAAACAGAGGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730741" ref_strand="+" ref_description="SGN-E730741 [LA25AC02]">
      <seq>catttcaccgccctctaagtccaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggatttggagaagcaaggtttctatcaattcattcgtgatacttatgtgatccatccagtcgcccttggagctctgttgtatgcaatgggaggattcccttacattgtttggggcatgggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2580" stop="971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2286" g_stop="1724" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="703" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1272" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="844" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E730741" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2286" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATTCCCTTACATTGTTTGGGGCATG</genome_strand>
        <mrna_strand>CATTTC-ACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATTCCCTTACATTGTTTGGGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727033" ref_strand="+" ref_description="SGN-E727033 [LA13CB08]">
      <seq>ctttggccctcttatcaccaccgccctctaagtccaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggatttggagaagcaaggtttctatcaattcattcgtgatacttatgtgatccatccagtcgcccttggagctctgttgtatgcaatgggaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2595" stop="994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2298" g_stop="1724" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="716" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1294" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="835" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E727033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2298" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATT</genome_strand>
        <mrna_strand>CTTTGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726831" ref_strand="+" ref_description="SGN-E726831 [LA12DG07]">
      <seq>caatggccctcttatcaccaccgccctctaagtccaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggatttggagaagcaaggtttctatcaattcattcgtgatacttatgtgatccatccagtcgcccttggagctctgttgtatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2598" stop="1003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2298" g_stop="1724" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="716" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1303" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="826" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E726831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2298" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAAT</genome_strand>
        <mrna_strand>CAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290353" ref_strand="+" ref_description="SGN-E290353 [cLES-20-A2]">
      <seq>taatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgaggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggataaggagaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2142" stop="1074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1842" g_stop="1724" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="260" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1374" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="299" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E290353" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1842" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAA</genome_strand>
        <mrna_strand>TAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGAGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGATAAGGAGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280898" ref_strand="-" ref_description="SGN-E280898 [cLEL-6-F7](-)">
      <seq>gcacgagtgcaccctttactttcaattactctgctcttgggattgcatttgggtggtatgtaatcactggacttctcggcctctacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataatgtgggggaattggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2195" stop="1078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1902" g_stop="1724" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="321" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1378" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="356" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E280898" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280898" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1902" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTAT-TACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAA</genome_strand>
        <mrna_strand>GCACGAGTGCACCCTTTACTTTCAATTACTCTGCTCTTGGGATTGCATTTGGGTGGTATGTAATCACTGGACTTCTCGGCCTCTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAATGTGGGGGAATTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729237" ref_strand="+" ref_description="SGN-E729237 [LA20BF12]">
      <seq>cttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacagccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccactaatgtgggggatttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2472" stop="1079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2172" g_stop="1724" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="590" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1379" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="624" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E729237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2172" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAATGTGGGGGATTTGGAGA</genome_strand>
        <mrna_strand>CTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACAGCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCACTAATGTGGGGGATTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332608" ref_strand="+" ref_description="SGN-E332608 [cTOD-18-D11]">
      <seq>tcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagttggatgtttgataccaacacccttactgagaggtgtgggaagcccaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2507" stop="1095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2207" g_stop="1724" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="625" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1395" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="643" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E332608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2207" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAAT</genome_strand>
        <mrna_strand>TCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280747" ref_strand="-" ref_description="SGN-E280747 [cLEL-6-E7](-)">
      <seq>agaattcggcacgagtgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggcattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagtgggatgtttgataccaacacccttactgagaggtgtgggaagcccaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2195" stop="1095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1895" g_stop="1724" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="187" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1497" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="328" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1412" g_stop="1395" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="346" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E280747" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1895" e_stop="1724"/>
          <exon e_start="1637" e_stop="1497"/>
          <exon e_start="1412" e_stop="1395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGGGTATGTCTTTCATTCTATAATCTATTTGCCTACTTATGAAATGGAAAGAATTCTTTTGAGTATTGATGTTCTATTTATGTGTAGTGTGGGAAGCCCAATAAT</genome_strand>
        <mrna_strand>TGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGCATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTGGGATGTTTGATACCAACACCCTTACTGAGAGG....................................................................................TGTGGGAAGCCCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327685" ref_strand="+" ref_description="SGN-E327685 [cTOC-20-C17]">
      <seq>aacaatggccctcttatcaccaccgccctctaagtccaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgtgattcagagaaagaccctcacagtccttatgaaggattttggttcagtcatatgagtgggatgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2600" stop="1218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2300" g_stop="1724" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1518" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="697" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E327685" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2300" e_stop="1724"/>
          <exon e_start="1637" e_stop="1518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGAT</genome_strand>
        <mrna_strand>AACAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTGGGATGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346712" ref_strand="+" ref_description="SGN-E346712 [cTOF-28-J13]">
      <seq>aatggccctcttatcaccaccgccctctaagtccaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcnagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattggtggtgtccaagcacttcagggacatccaattgattggggtgagtactcataggtaccaccatcagtttttgtgattcagagaaagaccctcacagtccttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2597" stop="1256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2297" g_stop="1724" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1556" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="660" r_length="84" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E346712" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2297" e_stop="1724"/>
          <exon e_start="1637" e_stop="1556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTC-AGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATT-GTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATT-GGGTGAGTACTCATAGGTACCACCATCAG-TTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATG</genome_strand>
        <mrna_strand>AATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCNAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGGTGAGTACTCATAGGTACCACCATCAGTTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200120" ref_strand="+" ref_description="SGN-E200120 [cLEB-7-J7]">
      <seq>gcacgagctcttatcaccaccgccctctaagttcaagccttacccattttcgccgcttccccgagcagttcatagacaggggagaagcactcaaacaacgaaaaatgtaaattccttgtcttgtacttcaatgacaacaaaaattggcgttgttaacaagtggaattgttatggactggaaggaaaagttagatttagcagaagagtaatgctaatgccaatcgtgaatgcagcagtgacgcagcctgtatcagaaaatgaaagagaatcgaactttaagaggattcttctttctgatgtagtcgtgacccggcctagggatgtgctttggggaaggaaatggaattcaatggatatggcctcagctgcggtggtggtgtctatgcatttgctctgtctatttgcaccctttactttcaattacgctgctcttgggattgcatttgggttatatgtaatcactggacttctcggtattacactttcttttcacagaaacctctctcatagaagtttcaaacttcccaaatggcttgaatacttttttgcctattgtggtgtccaagcacttcagggacatccaattgattgggtgagtactcataggtaccaccatcagttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2590" stop="1287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2297" g_stop="1724" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1637" g_stop="1587" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="625" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E200120" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2297" e_stop="1724"/>
          <exon e_start="1637" e_stop="1587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAGGTAATTCAATAAAACCCCATTATTACAAGTATTGTTTTCTTATTTTCTTGTATTTGGCTTTTGAATTTACAATGTGTCTATTGTAGGGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGT</genome_strand>
        <mrna_strand>GCACGAGCTCTTATCACCACCGCCCTCTAAGTTCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG......................................................................................GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578218" ref_strand="-" ref_description="SGN-E578218 [LE12AG08]">
      <seq>tggcctaaacacggtgtttgtggcgatgcaaacggcgtacattttggggacttttctaattgaagaacggcctcgagcgacaatatcggcgctgtttatgttcacattcagagggattctcgggtatgctacacaattgccgttgccggaggatttcttggggtcaggggtggatttcccagtagggaatgtgtcgtttttcttgttttattcagggcatgttgcggcctcggtgattgcttcgctggatatgaaacgtatgcagagatgggaaatggctagagtatttgacgcattgaatgtattgcaagttgtgaggttactaagcactaggggccattacactattgatttggctgttggtattggcgctggcattttgtttgattctatggcaggaaactatgtggagactaggacaaaactatctgccactaatggtattggtgtggaatactctcctaagcatgaaaacggagtgaaataccaaagtgtatcttcagattaaaatgtatccactcaaatgtgtgatggtggattttaggtcgaaatgtaaagataagtttgggttggtccaattgtagggtctttatcttagtgcacttctgttccaatttaggtactttgtaaactgcaactgcagcttcccactcaccccaccaaactcaccatgcttttaattttaatgtaagcagctttctttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10206" stop="7589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10057" g_stop="10045" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139">
            <donor d_prob="0.107" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9905" g_stop="9768" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="151" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8443" g_stop="7908" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="687" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="726"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E578218" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578218" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10057" e_stop="10045"/>
          <exon e_start="9905" e_stop="9768"/>
          <exon e_start="8443" e_stop="7908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTAAACACGGTACGCTACGCTACTACGCACATCACCAAATCGGTGCATGTCGGTGTTCCCGATCTAGTTATGAACTGGATCTGCAGTTTTTATCGATAAATTTTAGCATTAATCAAATATTTTTTTTCACGATTTGAGTTTAATTTAGGTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAGGTATTTTACTTTCCCTTTTTTCTATTAATAATCCATCCTGTATACAAGCTCTTTCTTTACAGCTAGATGCCTTTTGCTTTTAAAACTTCTAAAAGAAAGTTATTGAATACCAAATTCATATAATACATGAATATATCCTTTTTAACTTAGTCTTATTTTATATTATGTTATTTAATTTTATTTTTTTTTATAAAATTAAATAAATATACACAAATTCTACTTGTCACAAATTTTCATATTGGACATTTGTATTTATTTGTTTTATTTTACACAAATTTAAATATAAATGTGTTATTTCCGCTTTATTCGCGTAGATCACAAGCTAACCATTCATTTGACTTAAATACTTGTATGGATGGGACTATCTTAAACTTTTGTGTAGCCTCGTGCTCATAGAAGGCTCCCCGTCATTTTACTTGGTACGTATTAACTTACATGAGAAATATTTACAAATAAGCTTTGAAAATTTAATTTAATCTGAGTAGTATTGGAAGAAAAATGAGTAATTAATTTGCTAAATGGACAAGTAAAATCGGCCTTTCAATCAATATTCTATATAATATAACAGAAATGTTAAAGTTGAATAAATGCTGTTTAATACTATAATTTTTTTTTCCATCAAGTCATAGTGGGGGCTGGGGGGCATATTTTAGCATAAATAGCTGTCTAACAAATAGCTTGGACTTGTCCCAGCTAACTAATTTAATGCGATAAATGTTATAATACTGCTTGTATGAATTTTTAACCAAACTAAGCCATTATATAAAACAATTTATCAAAATAATATATTTTTCTAAAATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATGTACGTTTTACTGTAAGTAACGTTTTACTCCTAAAACATTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTATGAGTAATGTTTTAGGAGTAAAATGTTACTGTGAGTAACGTATATCAATCTGACGCTATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACAGTGGAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTCAAAACCTCCTGCTTGTATTACATAAGCACCACCCACATTTGAAACTGACTAGTGACTAGTGTAGAGTGTCATTCTCTACCATTAAACCTCCATGTTCTGAATTATTTGAATGTATGATTCAATTTAATGGTATCAATACAAAATGTCGAAAAATGCAGTGATATATCGCTTTCTGAATTGTAGGATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAAT</genome_strand>
        <mrna_strand>TGGCCTAAACACG...........................................................................................................................................GTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGAACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729573" ref_strand="+" ref_description="SGN-E729573 [LA21BH05]">
      <seq>atgtattcggtgtagtgaagtaccatccaataccgtgtatcttcgctgcttcactgttgtttttcatgggagtggaatatacgcttcatatgattccagcttctgctccgcctttcgatctcggatttattgttacagttcctcttaatcgattgcttgctgctaaacccgctctcaacactctctttgctggcctaaacacggtgtttgtggcgatgcaaacggcgtacattttggggacttttctaattgaaggacggcctcgagcgacaatatcggcgctgtttatgttcacattcagagggattctcgggtatgctacacaattgccgttgccggaggatttcttggggtcaggggtggatttcccagtagggaatgtgtcgtttttcttgttttattcagggcatgttgcggcctcggtgattgcttcgctggatatgaaacgtatgcagagatgggaaatggctagagtatttgacgcattgaatgtattgcaagttgtgaggttactaagcactaggggccattacactattgatttggctgttggtattggcgctggcattttgtttgattctatggcaggaaactatgtggagactaggacaaaactatctgccactaatggtattggtgtggaatactctcctaagcatgaaaacggagtgaaataccaaagtgtatcttcagattaaaatgtatccactcaaatgtgtgatggtggattttaggtcgaaatgtaaagataagtttgggttggtccaattgtagggtctttatcttagtgcacttctgttccaatttaggtactttgtaaactgcaactgcagcttcccactcaccccaccaaactcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10547" stop="7623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10247" g_stop="10045" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139">
            <donor d_prob="0.107" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9905" g_stop="9768" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="341" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8443" g_stop="7923" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="862" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E729573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10247" e_stop="10045"/>
          <exon e_start="9905" e_stop="9768"/>
          <exon e_start="8443" e_stop="7923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACGGTACGCTACGCTACTACGCACATCACCAAATCGGTGCATGTCGGTGTTCCCGATCTAGTTATGAACTGGATCTGCAGTTTTTATCGATAAATTTTAGCATTAATCAAATATTTTTTTTCACGATTTGAGTTTAATTTAGGTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAGGTATTTTACTTTCCCTTTTTTCTATTAATAATCCATCCTGTATACAAGCTCTTTCTTTACAGCTAGATGCCTTTTGCTTTTAAAACTTCTAAAAGAAAGTTATTGAATACCAAATTCATATAATACATGAATATATCCTTTTTAACTTAGTCTTATTTTATATTATGTTATTTAATTTTATTTTTTTTTATAAAATTAAATAAATATACACAAATTCTACTTGTCACAAATTTTCATATTGGACATTTGTATTTATTTGTTTTATTTTACACAAATTTAAATATAAATGTGTTATTTCCGCTTTATTCGCGTAGATCACAAGCTAACCATTCATTTGACTTAAATACTTGTATGGATGGGACTATCTTAAACTTTTGTGTAGCCTCGTGCTCATAGAAGGCTCCCCGTCATTTTACTTGGTACGTATTAACTTACATGAGAAATATTTACAAATAAGCTTTGAAAATTTAATTTAATCTGAGTAGTATTGGAAGAAAAATGAGTAATTAATTTGCTAAATGGACAAGTAAAATCGGCCTTTCAATCAATATTCTATATAATATAACAGAAATGTTAAAGTTGAATAAATGCTGTTTAATACTATAATTTTTTTTTCCATCAAGTCATAGTGGGGGCTGGGGGGCATATTTTAGCATAAATAGCTGTCTAACAAATAGCTTGGACTTGTCCCAGCTAACTAATTTAATGCGATAAATGTTATAATACTGCTTGTATGAATTTTTAACCAAACTAAGCCATTATATAAAACAATTTATCAAAATAATATATTTTTCTAAAATTTTACAAAATTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATGTACGTTTTACTGTAAGTAACGTTTTACTCCTAAAACATTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTATGAGTAATGTTTTAGGAGTAAAATGTTACTGTGAGTAACGTATATCAATCTGACGCTATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACAGTGGAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTCAAAACCTCCTGCTTGTATTACATAAGCACCACCCACATTTGAAACTGACTAGTGACTAGTGTAGAGTGTCATTCTCTACCATTAAACCTCCATGTTCTGAATTATTTGAATGTATGATTCAATTTAATGGTATCAATACAAAATGTCGAAAAATGCAGTGATATATCGCTTTCTGAATTGTAGGATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCAT</genome_strand>
        <mrna_strand>ATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACG...........................................................................................................................................GTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736774" ref_strand="+" ref_description="SGN-E736774 [LC07AE11]">
      <seq>cttgagtgctgcagcggtaaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaaggaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttgagaaattttgcctgttttaagttgtttctgtccaagcactaaactatggcagtgtaattatcgaaagctcaagcaagccagttgattttactctctcaaaaaaaaaaaaaaaaaaaaaaaaaccccccgggggggggccgggaccccattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13902" stop="12579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13602" g_stop="13534" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13402" g_stop="12879" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="593" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="619"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E736774" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13602" e_stop="13534"/>
          <exon e_start="13402" e_stop="12879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</genome_strand>
        <mrna_strand>CTTGAGTGCTGCAGCGGTAAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG...................................................................................................................................CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301576" ref_strand="-" ref_description="SGN-E301576 [cLEW-23-N5]">
      <seq>aggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaaggaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttgagaaattttgcctgttttaagttgtttctgtccaagcactaaactatggcagtgtaattatcgaaagctcaagcaagccagttgattttactctctcaaaaaaaaaaaaaaaaaaactccctcgtgccgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13594" stop="12579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13294" g_stop="12879" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="436"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E301576" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13294" e_stop="12879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</genome_strand>
        <mrna_strand>AGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257181" ref_strand="+" ref_description="SGN-E257181 [cLEG-46-L15]">
      <seq>ttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagctccagagtatatccacttgtcgaggctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaaggaaggattcaaagaaaaagacaaaatgttgataattataggtagattanggattcagttcaaccctcttgagaaattttgcctgttttaangtgttttctgtcaagcactaaactatggcagtgtaattatcgaaagctcaagcaagccagttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14347" stop="12589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14047" g_stop="13961" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="13534" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="248" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13402" g_stop="12889" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="763" r_length="515" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E257181" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14047" e_stop="13961"/>
          <exon e_start="13694" e_stop="13534"/>
          <exon e_start="13402" e_stop="12889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAA-CCTCTTGAGAAATTTTGCCTGTTTTAAGTTG-TTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATT</genome_strand>
        <mrna_strand>TTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG...................................................................................................................................CTCCAGAGTATATCCACTTGTCGAGGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTANGGATTCAGTTCAACCCTCTTGAGAAATTTTGCCTGTTTTAANGTGTTTTCTGT-CAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E741003" ref_strand="+" ref_description="SGN-E741003 [LC23DE02]">
      <seq>ccctttaatgctgcagcggtaaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacatccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaaggaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttgagaaattttgcctgttttaagttgtttctgtccaagcactatactaatggcagtgtaattatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13902" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13604" g_stop="13534" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13402" g_stop="12911" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="564" r_length="493" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E741003" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E741003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13604" e_stop="13534"/>
          <exon e_start="13402" e_stop="12911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACT-ATGGCAGTGTAATTATCGAA</genome_strand>
        <mrna_strand>CCCTTTAATGCTGCAGCGGTAAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG...................................................................................................................................CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACATCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTATACTAATGGCAGTGTAATTATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283023" ref_strand="+" ref_description="SGN-E283023 [cLER-17-F7]">
      <seq>ttagtgcttggacagaaacaacttaaaacaggcaaaatttctcaagaggttgaactgaatccctaatctacctataattatcaacattttggctttttctttgaatccttcctttaactgaataactgatcttccataccgtctcaccttccacaggagacactgccacttcttatcactgacgtcaagaggctgtatcctaaatctgaaaatctacagctcccccgaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12634" stop="13470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12934" g_stop="13170" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E283023" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12934" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGCTTGGACAGAAACAACTTAAAACAGGCAAAATTTCTCAAGAGGTTGAACTGAATCCCTAATCTACCTATAATTATCAACATTTTGTCTTTTTCTTTGAATCCTTCCTTTAACTGAATAACTGATCTTCCATACCGTCTCAGCTTCCACAGGAGACACTGCCACTTCTTATCACTGACGTCAAGAGGTTGTATCCTAGATCTGAAAATCTACAGCTCCCCCGAAAATATAGC</genome_strand>
        <mrna_strand>TTAGTGCTTGGACAGAAACAACTTAAAACAGGCAAAATTTCTCAAGAGGTTGAACTGAATCCCTAATCTACCTATAATTATCAACATTTTGGCTTTTTCTTTGAATCCTTCCTTTAACTGAATAACTGATCTTCCATACCGTCTCACCTTCCACAGGAGACACTGCCACTTCTTATCACTGACGTCAAGAGGCTGTATCCTAAATCTGAAAATCTACAGCTCCCCCGAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710090" ref_strand="+" ref_description="SGN-E710090 [FA54AG03]">
      <seq>cgcttgtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaaggtatgcatctttgtattctaatttttttccaaaggtatgaatcatatcagggacaataggggactaaaactaggtgtagtttcatattctctcatgtctgtctcctagttgcctgacaatgtacttgacagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgagacggtatggaagatcagttattcagttaaagaaggattcaaagaaaaagacaaaatgttgataattataggtagattagggattcagttcaacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14409" stop="12676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14110" g_stop="13961" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="12976" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="868" r_length="718" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E710090" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14110" e_stop="13961"/>
          <exon e_start="13694" e_stop="12976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTG</genome_strand>
        <mrna_strand>CGCTTGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAA-GAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236601" ref_strand="+" ref_description="SGN-E236601 [cLED-13-J11]">
      <seq>tcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctctagagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccctggcatgagctctgctgccactggtcttgatcaagcatcaaggtagcggcagtggtctctctgatgcaaatgctcctgtgctatattttcgggggagctgtagattttcagatctaggatacaacctcttgacgtcagtgataagaagtggcagtgtctcctgtggaagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14315" stop="12776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14015" g_stop="13961" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="13534" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="216" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13533" i_stop="13397" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13396" g_stop="13076" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="537" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E236601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14015" e_stop="13961"/>
          <exon e_start="13694" e_stop="13534"/>
          <exon e_start="13396" e_stop="13076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAG</genome_strand>
        <mrna_strand>TCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG.........................................................................................................................................AGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251167" ref_strand="+" ref_description="SGN-E251167 [cLEG-10-D5]">
      <seq>tgaaaagcaaactcaaaggtcatcagaagagagtaactggcttggctttctctagcgttttgaatgttctggtatcatctggtgctgatgctcagctatgtgtttggagcatggatggatgggagaagaaagccagcaagtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacccaagctccagagtatatccacttgtcgttgctgctcatccatctgaatcaaaccaatgcgcagtaggacttactgatggcggagtttatgtgcttgagcctttaaagtcggaaggtaaatggggcacaccacctccaaatgaaaatggtgttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15323" stop="12950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15023" g_stop="14929" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14149" g_stop="13961" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="284" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13694" g_stop="13534" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="445" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13402" g_stop="13250" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="598" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E251167" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15023" e_stop="14929"/>
          <exon e_start="14149" e_stop="13961"/>
          <exon e_start="13694" e_stop="13534"/>
          <exon e_start="13402" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCC</genome_strand>
        <mrna_strand>TGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG...................................................................................................................................CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTTTAAAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307240" ref_strand="+" ref_description="SGN-E307240 [cLEY-12-C11]">
      <seq>ggtcatcagaagagagtaacctggcttggctttctcttaccgttttgaatgttctggtatcatctggtgcctgatgcctcagctatgtgtttggagcatggatggatgggagaagaaagccagcaagtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaatcctgccgcctacttgccttctaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15306" stop="13238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15006" g_stop="14929" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14149" g_stop="13961" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="271" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13694" g_stop="13538" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="428" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E307240" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15006" e_stop="14929"/>
          <exon e_start="14149" e_stop="13961"/>
          <exon e_start="13694" e_stop="13538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATCAGAAGAGAGTAA-CTGGCTTGGCTTTCTC-TAGCGTTTTGAATGTTCTGGTATCATCTGGTG-CTGATG-CTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACC</genome_strand>
        <mrna_strand>GGTCATCAGAAGAGAGTAACCTGGCTTGGCTTTCTCTTACCGTTTTGAATGTTCTGGTATCATCTGGTGCCTGATGCCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305696" ref_strand="+" ref_description="SGN-E305696 [cLEX-14-P22]">
      <seq>gaaaagcaaactcaaaggtcatcagaagagagtaactggcttggctttctctagcgttttgaatgttctggtatcatctggtgctgatgctcagctatgtgtttggagcatggatggatgggagaagaaagccagcaagtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggttgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcgtgaagcagtgggtttcaccaaattttgcagttactgatgcgacgtattcgtgtgatagccaatcaatttttgcaagttttgatgatggaagtgtgagtatctttaccgctgcagcactcaagctgaggtgtcgggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15322" stop="13263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15022" g_stop="14929" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14149" g_stop="13961" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="283" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13694" g_stop="13563" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="415" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E305696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15022" e_stop="14929"/>
          <exon e_start="14149" e_stop="13961"/>
          <exon e_start="13694" e_stop="13563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAGGTTTGTAAGACATATCTTGTTTACCTGGTGCTTTGCTCTTGGTGGGTTACGATAATGTTGTGTCCTGTGTTTATTTGGCAAGCATTATATTATTGCATGGTGGGAGATGGTACTTTGATTTTTCATATAAATAGACCCCAAATCACACAAACTAGGAGTTATTGTTAAAACTAGTCAAAAATATTGTTTTTAGTCTTTTGTATGTTTGTCTGATCAAGGGAAGGAAAGGAGGCTGTTGAACTCACATAAAGTTTGGTTTCTTGCAGTGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAAT</genome_strand>
        <mrna_strand>GAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG..........................................................................................................................................................................................................................................................................TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245135" ref_strand="+" ref_description="SGN-E245135 [cLEF-13-L10]">
      <seq>catcacaagagagtaactggcttggctttctctagcgtgttgaatgttctggtatcatctggtgctgatgctcagctatgtgtttggagcatggatggatgggagaagaaagccagcaagtttttgcagatcccctctggtagagcaataaatcctcttgctcagacacgggttcagttccatcaagatcagacgcatttgttggatgttcatgaaacacagatagcaatatatgaagcatcaaagcttgaatgcttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15303" stop="13664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="14929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14149" g_stop="13964" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="261" r_length="186" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E245135" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="14929"/>
          <exon e_start="14149" e_stop="13964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAG</genome_strand>
        <mrna_strand>CATCACAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTGTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGATGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303232" ref_strand="+" ref_description="SGN-E303232 [cLEX-5-M15]">
      <seq>caattctggctttggcatacaatgccgtacacaaactctggaagtggcaacggaacgagaggaacgtgacaggaaaggcatctactgctgtcccccctcaattatggcaaccttccagtggaattctgatgacaaatgatataagcgacacaaaccctgaagaagctgttccatgctttgcactttccaagaatgactcttatgttatgtccgcatctggtggaaaaatttctttgtttaacatgatgacttttaagaccatgacaactttcatgccccctccacctgcagcaacttttcttgcttttcatccacaggataataacattattgctatcggaatggaggactcttctatacaaatatataatgttcgcgttgatgaggtgaaaagcaaactcaaaggtcatcagaagagagtaactggcttggctttctctagcgttttgaatgttctggtatcatctggtgctgatgctcagctatgtgtttggagcatggatggatgggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16045" stop="13819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15745" g_stop="15669" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131">
            <donor d_prob="0.422" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15537" g_stop="15358" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="257" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15254" g_stop="15126" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="386" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15024" g_stop="14929" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14149" g_stop="14119" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="513" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E303232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15745" e_stop="15669"/>
          <exon e_start="15537" e_stop="15358"/>
          <exon e_start="15254" e_stop="15126"/>
          <exon e_start="15024" e_stop="14929"/>
          <exon e_start="14149" e_stop="14119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAGGTACTGGGACTTTTTGTTTTGAGTTTTTTTCTCTTCCCAAAAATTCCGCAGTGAATTATCTTTCTTTTTCCCCTATAACCTTGATCTTTAATGTTTCTTTTCTGATAACCTGTTCCGATTTATCTCTCCAGGCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAGGTATTTATAACTCAAATGTGTATGGCTTAGTTCGATAGCTTGTGTATCAGTGTGATTGGTCGGTTTTAATCTGAGGCTTAACATACACTTAAATGCCTTGCAGACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAGGTCCTGAAATAAATTATGATTATATGTTAAGATTAGGATATCATAATTGATATATGATCTGTGCATAACATAATGATTTAGTTACTTTTTCAAATCTACAGGTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAGGTAAATACCATGTTATACTTCGAAAATCTGCAGGACCCAGATTCACTGTTGGCAGGGTGGGCATTCGGTAATTCGGTTCGATTTTGGGTTTTTTTCCCGGTTTTTTCGGTTTTCGATTCTTGTTCAATGTGTACCGAACACCGAACCGTAATAATTCGGTTCGGTTCGGTTTTGTCATTTCGGTTTTTTAATGGGCCTGCTTGGTGGATTTTTTAAAATTTAAAAATTTACAATTTTTTTGTTTGATTTTTCAGCTTAATGGGCTAAAAATAGCTACATCAAAGAAGTGTCTTTTACTTTTTAATTTTTTATTTTAAATTATAATATTTACTATTTAACATTAATAATTAATATAATATAAATATATAGTATAATATAATATATTTCGGTAAACCGAAATACCGAATAACACAAAATTACATATCGAAATACCGAAAAAAACAAAAACATATACCGAATGCCGAACCGAAATACCGAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTCGGTGTTTATGCCCAGCTGTTGGGACTTGCTCAATGCTTTTCTGGTAGACACTTGAGAAATTTCAGTGGGTGAAGAGTGTAGAATTTCTTATAAAGAGCAAAAAAGCTTTCTACCTTGTTATCAAGTTGCTTTCTACTGCACTTGTTACCTGTCTATGGCAGGAAAGTTAAAACACAACAGTTCCCTTTTAAATTGTTTCCATTGATTCTCCAAAGAATTTCCATCCTGTATCTCTCTTTATCTTGGTTTCTTACCATTTACATTCTTCAGCTATGTGTTTGGAGCATGGATGGATGGGAGA</genome_strand>
        <mrna_strand>CAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG...................................................................................................................................GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG.......................................................................................................ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG.....................................................................................................GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTTGGAGCATGGATGGATGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210834" ref_strand="+" ref_description="SGN-E210834 [cLEC-68-B18]">
      <seq>tcgggctccttcgccagttgctaatccaataattggttctatgcctaaagtaggtggttttccacctataggcgcccatggaccattccagccagcacaagcacctattgcttcgcttggaggatggatgaccaatcctccctctatgccacaccaagctatttcaggaggaccaataggcttaagccctcctactaatgctgcatccatgctaaagcatcctaggactcctcctgctagcaatgctgcgttggactaccaaacagccgattcagagcatgtactgaagaggccaagaccctttgggatgtcagaggaggtcaataatctccccgtcaacattttccccgtcacatatcctggacagagccatgctcatagcttgcattcttctgatgacttgcccaagactgttgtggtgaacttgaatcaagggtctgctgttaagagcatggatttccatcctgtgcaacaaactcttcttcttgttggaacaaacattggtgacattgctatatgggagattggtggcagggaaaggcttgcatttaaaaattttaaagtttgggagataggtaactgttcaatgactttgcaggcttctttagcgaatgaatacactgcaacagttaaccgtgtgatgtggagtcctgatgggaaccttcttggtgttgcatattctaagcacatagttcatctatactcataccatgggtggtgatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20635" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20335" g_stop="20254" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20253" i_stop="20127" i_length="127">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20126" g_stop="20006" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="203" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20005" i_stop="19853" i_length="153">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19852" g_stop="19737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="319" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19736" i_stop="19494" i_length="243">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19493" g_stop="19325" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="488" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19324" i_stop="19225" i_length="100">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19224" g_stop="19115" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="598" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19114" i_stop="19028" i_length="87">
            <donor d_prob="0.474" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19027" g_stop="18958" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="668" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18957" i_stop="18486" i_length="472">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18485" g_stop="18427" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="728" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E210834" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20335" e_stop="20254"/>
          <exon e_start="20126" e_stop="20006"/>
          <exon e_start="19852" e_stop="19737"/>
          <exon e_start="19493" e_stop="19325"/>
          <exon e_start="19224" e_stop="19115"/>
          <exon e_start="19027" e_stop="18958"/>
          <exon e_start="18485" e_stop="18427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGAGTATGTGTTCCTTGAAACAACTACCTCCTTTCTTAGTTTCTCCCTTTCTAAAAAGTAAATGTAAGCTCGCTGAGTATATTATTTGAATTTGTTGTTCAAATTACTCTTGTTTTTTTTGTCTGAAAAGCCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTGGTAATTTTGTTTTTCCTACTAATGAATGTCATTTGACTGTTACCTTTTACTATTTCTGTATCATTGTTAACATCTGATTTCATGTTCTTTAATTCCCCTGTTCTTCCCTCTGGCTAATTTTTTTGGCTTCTTTCATGTGTTGCTATACGATAGCATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAGGTACATAATATGCCATTTACACTCTTCTCTCTCTGGTTTTGTTTTATGTGAGTTTGTGGGAGTGGGTTAGTTTAGGAGTTCTGGACTCTTGATTGTTGAGGTACTTTTGTTGGGGTTAAGGAAATTATCAATACTTGCTAGTCTTTAGGTTTCCTTTTTATGTCATCTTAGCTTAAAATGTCGAACTGTGCTTTATCAAGGGATATCCAGTCTTCACCTCTTGATCTAATTGGACTTCTGCAGGTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTGGTCAGCTTTCGGTGTTGCTTAATTATTCAGATATATACAGCTTTTCACTCTAAGCGTGTGATGTTATCTTTCTGAAGATTGTGCTCGTCTACCTTTTCAGTTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAGGTCAGTGCGTCTCTAATAGAGTATTTAACCTTTTATGGGCTTTCTTCCAGTTTTGATAGATATTAATTTCCTCTTTCTTACTTATAGGCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTGGTATGTAGTAATCATCCCTTCTTGTAATGTGAAGTGAGGATTTTCCTGGGATTGAAGCATTTTGACAAGGGTGCTGCTATGGAGAAAGTACTTGTCGTCTTAGATTTTTGATGGATTGAGCTCATTTTTAAATATTAAGAATTCTCTACTATTTCATTTGATTTTCAGATGCTAAGAGGAAATTGTAGATGATTGAATTTTGTTAGCTCTAAGTGTGATTGCTTCTTTTCTTGTCAAACCACTAGTTGTTTCTTTATCCCGGTTCAAATCAGTTTATTGGGTGGGTGTTGTTGGTTTTCTTTGTACACTATACCTCTAGTGAGAAGTATTGATTTCCACTGCATTAGATTTTGTGATAGTGGATTAAGCACTATTTTTTCTTTTATTATGTGATAAAATAAATGAAATTTATGAGGTCAGTGGTTTCTGTCATTCAATCATGCTATTTTCTTGATTATCTACGTTGATGCAGGTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCAT-GGTGGTGATGATTTG</genome_strand>
        <mrna_strand>TCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGA...............................................................................................................................CCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTG.........................................................................................................................................................CATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAG...................................................................................................................................................................................................................................................GTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTG....................................................................................................TTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAG.......................................................................................GCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCATGGGTGGTGATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337531" ref_strand="+" ref_description="SGN-E337531 [cTOE-11-L24]">
      <seq>gagaatgaacagctttcaaagtatggagataccaagtctgctagggcgataatgcttgttgagttaaaaaaattgatcgaggccaatcctcttttccgcgagaagcttcagtttcctagcttaaagaactcaaggctgcggacattgataaaccagagtttaaattggcagcatcagctatgcaagaacccaaagcccaatcctgatataaaaacactctttgttgaccatgcttgtgggcaaccaaatggtgctcgggctccttcgccagttgctaatccaataattggttctatgcctaaagtaggtggttttccacctataggcgcccatggaccattccagccagcacaagcacctattgcttcgcttggaggatggatgaccaatcctccctctatgccacaccaagctatttcaggaggaccaataggcttaagccctcctactaatgctgcatccatgctaaagcatcctangactcctcctgctagcaatgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="21010" stop="19506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20710" g_stop="20553" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20552" i_stop="20432" i_length="121">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20431" g_stop="20254" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="336" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20253" i_stop="20127" i_length="127">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20126" g_stop="20006" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="457" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20005" i_stop="19853" i_length="153">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19852" g_stop="19806" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E337531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20710" e_stop="20553"/>
          <exon e_start="20431" e_stop="20254"/>
          <exon e_start="20126" e_stop="20006"/>
          <exon e_start="19852" e_stop="19806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAGGTGACCAAGGAACAGCTTTATTAATATTCTTATGTTTTTTTTCTTCAGGCTGAGTTTAAATCTTTTTTCTGTTTACACCATTGTATGTTCATTATTATTATTCCATTCTATTATCTCGCAGTTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGAGTATGTGTTCCTTGAAACAACTACCTCCTTTCTTAGTTTCTCCCTTTCTAAAAAGTAAATGTAAGCTCGCTGAGTATATTATTTGAATTTGTTGTTCAAATTACTCTTGTTTTTTTTGTCTGAAAAGCCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTGGTAATTTTGTTTTTCCTACTAATGAATGTCATTTGACTGTTACCTTTTACTATTTCTGTATCATTGTTAACATCTGATTTCATGTTCTTTAATTCCCCTGTTCTTCCCTCTGGCTAATTTTTTTGGCTTCTTTCATGTGTTGCTATACGATAGCATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCG</genome_strand>
        <mrna_strand>GAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAG.........................................................................................................................TTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGA...............................................................................................................................CCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTG.........................................................................................................................................................CATCCATGCTAAAGCATCCTANGACTCCTCCTGCTAGCAATGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354105" ref_strand="+" ref_description="SGN-E354105 [cTOS-16-J21]">
      <seq>aagaaaccaattgagaaggtcaatctaactgtgaaacgcacaatcactgattgggcactaccacttgtgtgtgaagggaagttgagtgaacttgcagacccaaggttgagtgggaactacgtggaggaagaattcaaaagagtggttcttgttgctctcgtttgtgctcaaaatcgacctgagaagagaccaacaatgcttgacgttatcgagctactgaaaggagaagcaaaagagaaattcacagctttggaaaatgatgatatgttcaagattcctccagtagtggatgatgatgttttgtcaggaacagaaggcaatgcagactctactgcttcagaggaaaaagaaccaaaaccagaaattgaaaaggtagaggtacaagcttaagagaatgtgggtaattgattgtggcttgttcatattgaatttgtgtaggacttaatgtattttttggagaagaaatactgataatcattacttggaacaacaggtactttttttttttttttttttgaattggaagtatcatttcattgggttgtgcaggaatggatgttattctcgtctttcgtgtgattttctcgtgtaatatgttgaacacaagaaatgaaaactggttatatgctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="30451" stop="29223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30151" g_stop="29524" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E354105" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30151" e_stop="29524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTAC---TTTTCTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGTTTATATGCTGA</genome_strand>
        <mrna_strand>AAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACAATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTACTTTTTTTTTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGGTTATATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354114" ref_strand="+" ref_description="SGN-E354114 [cTOS-16-N5]">
      <seq>aagaaaccaattgagaaggtcaatctaactgtgaaacgcacaatcactgattgggcactaccacttgtgtgtgaagggaagttgagtgaacttgcagacccaaggttgagtgggaactacgtggaggaagaattcaaaagagtggttcttgttgctctcgtttgtgctcaaaatcgacctgagaagagaccaacaatgcttgacgttatcgagctactgaaaggagaagcaaaagagaaattcacagctttggaaaatgatgatatgttcaagattcctccagtagtggatgatgatgttttgtcaggaacagaaggcaatgcagactctactgcttcagaggaaaaagaaccaaaaccagaaattgaaaaggtagaggtacaagcttaagagaatgtgggtaattgattgtggcttgttcatattgaatttgtgtaggacttaatgtattttttggagaagaaatactgataatcattacttggaacaacaggtactttttttttttttttttttgaattggaagtatcatttcattgggttgtgcaggaatggatgttattctcgtctttcgtgtgattttctcgtgtaatatgttgaacaccagaaatgaaaactgtttatatgcttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="30451" stop="29223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30151" g_stop="29529" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E354114" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30151" e_stop="29529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTAC---TTTTCTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGTTTATAT</genome_strand>
        <mrna_strand>AAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACAATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTACTTTTTTTTTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACCAGAAATGAAAACTGTTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703825" ref_strand="+" ref_description="SGN-E703825 [FA22CC08]">
      <seq>gggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcggttactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagcaagcaacgtgctgctcgattctgatttccaagcccaagttgctgattttggatttgcaaagttcatcccagatggtgcaacacatgtaaccactagagtaaaaggcactctaggctatcttgcaccagaatatgcaatgttagggaaggcatcggagagctgtgatgtttacagctttggtattcttttgctagagcttgctagtggcaagaaaccaattgagaaggtcaatctaactgtgaaacgcacaatcactgattgggcactaccacttgtgtgtgaagggaagttgagtgaacttgcagacccaaggttgagtgggaactacgtggaggaagaattcaaaagagtggttcttgttgctctcgtttgtgctcaaaatcgacctgagaagagaccaacaatgcttgacgttatcgagctactgaaaggagaagcaaaagagaaattcacagctttggaaaatgatgatatgttcaagattcctccagtagtggatgatgatgttttgtcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33772" stop="29543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33472" g_stop="33449" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="287" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30410" g_stop="29843" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="855" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E703825" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33472" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="29843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGA</genome_strand>
        <mrna_strand>GGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACAATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395529" ref_strand="+" ref_description="SGN-E395529 [TUS-43-C24]">
      <seq>tcagatcgaaaggggcaagcgaagaagcagccaacatggagggttttttctctgaaggagttgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcggttactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagcaagcaacgtgctgctcgattctgatttccaagcccaagttgctgattttggatttgcaaagttcatcccagatggtgcaacacatgtaaccactagagtaaaaggcactctaggctatcttgcaccagaatatgcaatgttagggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33903" stop="29912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33869" g_stop="33862" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33596" g_stop="33449" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="156" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="419" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30410" g_stop="30212" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="618" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E395529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33869" e_stop="33862"/>
          <exon e_start="33596" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="30212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGGTATGTGTGTGCTAATTTGTTCAAAGCTATTACCTTTAATTACTCTTCTTGTAAATTTCACCTGGTTTTGTTTCTAATTAAGGTTTGAGTTTAGCTATTTGTACATGTTTTTTTACTAGAGTATTCTGATTAGACACTGTTGCATTTGAATAATTTCGTGCTGTGAAGACTTCTAATTGTGTTAATTTGGGGAATGCTGATAAACAAAGTGCAGGAACCTATTTTCCCCCTTTTTTGAATTGATTTTCGATTTGAAATGATACAGAAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAG</genome_strand>
        <mrna_strand>TCAGATCG.........................................................................................................................................................................................................................................................................AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274769" ref_strand="+" ref_description="SGN-E274769 [cLEN-13-N10]">
      <seq>tgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcggttactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagcaagcaacgtgctgctcgattctgatttccaagcccaagttgctgattttggatttgcaaagttcatcccagatggtgcaacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33843" stop="29974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33543" g_stop="33449" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="358" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30410" g_stop="30274" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="495" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E274769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33543" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="30274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATG</genome_strand>
        <mrna_strand>TGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276760" ref_strand="+" ref_description="SGN-E276760 [cLEN-14-N20]">
      <seq>tgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcgggtactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagcaagcaacgtgctgctcgattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33843" stop="30036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33543" g_stop="33449" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="358" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30410" g_stop="30336" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="433" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E276760" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33543" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="30336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGA</genome_strand>
        <mrna_strand>TGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGGTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204812" ref_strand="+" ref_description="SGN-E204812 [cLEC-14-G12]">
      <seq>cagatcgaaaggggcaagcgaagaagcagccaacatggagggttttttctctgaaggagttgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctgagatggaatttgctgttgaagttgaaattctggctagagtacgacacaaaaatcttctaagtttacgcggttactgtgcagaaggccaggaacgtctgatcgtatatgactacatgcctaatttaagcttgctttctcatcttcacggccagcattctgctgaaagccttcttgattggaaacgccgaatgaatgttgcaattggatcagctgagggaattgcctatctgcaccaccatgcaaccccgcatatcatccacagagacatcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33903" stop="30060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33868" g_stop="33862" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33596" g_stop="33449" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="155" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30811" g_stop="30549" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="418" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30410" g_stop="30360" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="469" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E204812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33868" e_stop="33862"/>
          <exon e_start="33596" e_stop="33449"/>
          <exon e_start="30811" e_stop="30549"/>
          <exon e_start="30410" e_stop="30360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGGTATGTGTGTGCTAATTTGTTCAAAGCTATTACCTTTAATTACTCTTCTTGTAAATTTCACCTGGTTTTGTTTCTAATTAAGGTTTGAGTTTAGCTATTTGTACATGTTTTTTTACTAGAGTATTCTGATTAGACACTGTTGCATTTGAATAATTTCGTGCTGTGAAGACTTCTAATTGTGTTAATTTGGGGAATGCTGATAAACAAAGTGCAGGAACCTATTTTCCCCCTTTTTTGAATTGATTTTCGATTTGAAATGATACAGAAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGCGTAAGTATTCAACATCCTCGATCCCTCTTTCTGACTCCCTTCCCCCCACCCCTGACCCCACTATCCTTCTAGAGCCTCCAGGGTGTTACAGGGTCTTATGTTTCCTCTTCATTTGCTTACCTCTAATGTGTATGACAGCTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGC</genome_strand>
        <mrna_strand>CAGATCG.........................................................................................................................................................................................................................................................................AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC..........................................................................................................................................CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267408" ref_strand="+" ref_description="SGN-E267408 [cLEI-8-O3]">
      <seq>ctttgctgtaacggaaatgggggagctttattctttttgagcagagaaaaacagtcagataaagtgattgctgagtggagtttacggctttttcttcttttctgctatggggttctgaaagattgattcttgatcgacttatttgatatactcttctgttaagaaagagaaagttgagttttttgctgtttcaatattcaaaattcaaaagctatggacttttcgtctatattttgctgtgtcaagggttcagatcgaaaggggcaagcgaagaagcagccaacatggagggttttttctctgaaggagttgcactctgctacgaataattttaactatgataacaagcttggagaaggtggttttggaagtgtttactgggggcagctctgggatggatctcagatagcagtcaaaaggctaaaggtgtggagcaacaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34418" stop="30471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34118" g_stop="33862" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33596" g_stop="33449" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="405" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30811" g_stop="30771" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="446" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E267408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34118" e_stop="33862"/>
          <exon e_start="33596" e_stop="33449"/>
          <exon e_start="30811" e_stop="30771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCGGTATGTGTGTGCTAATTTGTTCAAAGCTATTACCTTTAATTACTCTTCTTGTAAATTTCACCTGGTTTTGTTTCTAATTAAGGTTTGAGTTTAGCTATTTGTACATGTTTTTTTACTAGAGTATTCTGATTAGACACTGTTGCATTTGAATAATTTCGTGCTGTGAAGACTTCTAATTGTGTTAATTTGGGGAATGCTGATAAACAAAGTGCAGGAACCTATTTTCCCCCTTTTTTGAATTGATTTTCGATTTGAAATGATACAGAAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAGGTAATTTACATCTACAATGTTGAACGTTTTGTTTTAGATTAAAAAAGTATATGTTTTCTACTTGTTAACTAAGGGCAGTGCGGCACACAAAGCATCCCTTTTTACACAAGACCTAGGGAAAAGTCACACCCTTAAGGGACGTGATGTAGGCAGTCTACCTAACTCAAGACTCATTCCGCGGATCAAACCCATGACTATAGGTCACATGGTGACAACCTTATGTTGCACCCATTCTCCTTGTAAACTGATTGGAGCAATTATATAAAAAATTCTGTAGAGCTGGAACACTATTGACATACTTGAGTCTATTCATATAGCTATTGAAAAATTCAGAATTGATTGCCCATATAAAGTGTTGTATCTCTGTCATTCACTTGGAGTTAGGGATCTCAGAGGAAGCTTTTCAAGGTAGTTGGTTGTGAATTTGTGATAGTAATTATGACTGTTAATGATATAATAGGTTCCAAAGCCCTAGCTGGTAAAGAGATGAATATTGATGATCGTTTGGATCTTCTTTAAGAGATTCCTTAGGTCTCTGATTCCATGGTAGATACTTTGAAAGGAGGTTTAAAAAAAACATTTAATGGTTTTTTGGTAGGAAAGCTCTATAATATTTTGTATAGTTAGTTCCAATCCAACAACAAGCTTTTCTGAAATGGGGCACAGTCTCAGCCTTAATGGACAGGCATCTTCAAAGTTACTTACAGCGTTTTGAGCCCCTCCCAAATGAACAGGAAGAAGAGATTAGACTGGAATTTACATTTTTTACTTAACGTAGAACTTAAGCTAAAAGAATTGTGTGCATAAGAGCATATTTCCACTTCTAACCAACTCAGAATCTTGTATTTTCAATAAATGGTGCTTAAGAATACATGAGCATGGCCTCCATAGGGATTCAAACCACATTTTTGTTGGAGGCTGCATGTAAGCTATTATGCTGATTTTTCATTGCATTGTGAAAACTTATATGAAGGATTTCTTCTTTTTACCTTTTGTACTTACTTCAAACCAAAAGGGAAATGGATCTCTTCTTTGTTTGATTCACTGGCCTCTTCTCATAATGTAGGGAAAAGTAGCATCAAGATTGCTTATAGAGATAATAAAACACATCTAACTGTGTCTTTGAAATGTAGATTTTTTTTCTGTGATCCAATTGAGCGGTGATTAGTTGATTGATAGTTTGGTCCAAATTGGACTAGAAGAAGTCCAATTCAGCTTAACGTGTAAGGTTTGTTTATGTGAAATGTGTAATACCATTGTTCGCATCCTAATAATGGCAAGATTAGTTGAATTCTTGTCATTTGCCTAATCCGGGTGGGTGGAGTTACCACATACCTGAGCTTGGTCGGAGGCAGTAGGTGTAGGTGTCCGAGGATTAGTTAAGGTGCTTTCCTTGACAATACCTTCATTTGGGTGGGGGTTTGTGGGGGAGGCGAGACAGTGTTAGGAAGTTCTAATTTTCTCTTGCTTACATTACTTTATGTCAGAAACAACCTCTCTGGCTCTCTACCTCTGAGATAGGGGTAAGCACATCGTACACTCTACCCTCCCCGACCCCACTTTTTGGTACTACACTGGGTATGTTGTTGTATTAGTTCATAAATTAAAATTTAAATCCATTGTCTGGCACTAATCATTCTTAAAACTAAGCTTTATAGATTGTCTTCACTGCCTGATTCTCCCTTCCCCGAGCCTTATTCTTGACCACTTTGTTTGGTTAAGTAACTCTTTTTAGTTTTTAAATAGGTTTGGGATCTGTTATGATTCTTTCATACTGTAGTTTGATTTTAACTTGCAATTCTGAATGGAATATCAGTTTATATTTCTTTGCCATATATTCCTCATTTAGGGCTATTGATTCTTCAGATTTCTCTGCAAAAGTCCATCACTGTTTCACCTCTTTCCTATCTCACTACTTCTCTAATCTGATTTTCTGGTTTCTTGTTGGTACTGTTTTATTAAGACTCTCTAAAGCTATATCTATCTTCCAGCATGTACTAATATCAAAACTGAGTCTAATTTCCATTTTTTTGCTGTAACAAATGTTTTATAAATGGAGCATATCATTCTAAAGCTTGAAGAATTTTTTTAATTATCTGTTGAATCCATGACATCTGTGTTTTAGAGATAAAAAAATGTATATATGCTAATATTACCCTAGGGTAAATGGACATGCCTGGGTTTTGTTGAAAGGAAGGAGCCAAATCCCCCCCGCCACCCTCCTCCCAAGAACAAAGGGGGAAAAAGATAAAGTGAAAAAAATAAAGAAGATACATTTGCTGAAACCATGATATGAAATGCTTCTGTTGGAAAAAGTTAGTGGACAATGATGTAGGCATGTTTAGAAGAAAGCTGACAGTGGCCGTGAATAGGAATATGTGCAAGTTGTATGTTCATTTATGTGCTTTTGCTTGCTTTTCTTCAAAAGATTTCAGTTTTCGAACTAACATATTTTACTGAGGAACTATAATAAAAACTAAAAGATAGTAAGAAAGACTGGCAAAATATCTTTAAAGTGAAAAGACATCACATGCCAATGAAGTTGGAGTCCTTCCATACAATGTGTTACAGTGAGTTGTAGAACTTCACCTACTGATTATAGGGTTGTGCTTTTCTTAATGAATACATAATTTTCAGATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGA</genome_strand>
        <mrna_strand>CTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCG.........................................................................................................................................................................................................................................................................AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726773" ref_strand="+" ref_description="SGN-E726773 [LA12DB04]">
      <seq>cttagacaaacattagttgcggcaacatgacggtgtacttccataatctccaccatgaattcccggaaggacgtaacactctcccctttaagcgcgtgttcggggacgctccttctcatctccactatataaaaagaggaacctaacccaccaaggcaaaaattgagtgcacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40300" stop="42922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40600" g_stop="41077" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="599" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="820" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42622" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="837" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E726773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40600" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAA</genome_strand>
        <mrna_strand>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316191" ref_strand="+" ref_description="SGN-E316191 [cTOA-23-M9]">
      <seq>ttgcggcaacatgacggtgtacttccataatctccaccatgaattcccggaaggacgtaacactctcccctttaagcgcgtgttcggggacgctccttctcatctccactatataaaaagaggaacctaacccaccaaggcaaaaattgagtgcacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggtacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaccaactaacgggccagatgttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40316" stop="42426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40616" g_stop="41077" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="582" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42126" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="617" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E316191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40616" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTG</genome_strand>
        <mrna_strand>TTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGG-TACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-AAAACCAACTAACGGGCCAGATGTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316197" ref_strand="+" ref_description="SGN-E316197 [cTOA-23-O7]">
      <seq>ttgcggcaacatgacggtgtacttccataatctccaccatgaattcccggaaggacgtaacactctcccctttaagcgcgtgttcggggacgctccttctcatctccactatataaaaagaggaacctaacccaccaaggcaaaaattgagtgcacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctggttccaagaagattcgttgctcttcctctacttctccgggtcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40316" stop="41320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40616" g_stop="41021" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E316197" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40616" e_stop="41021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGT</genome_strand>
        <mrna_strand>TTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGGTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGGTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211339" ref_strand="+" ref_description="SGN-E211339 [cLEC-70-F24]">
      <seq>tccaccatgaattcccggaaggacgtaacactctcccctttaagcgcgtgttcggggacgctccttctcatctccactatataaaaagaggaacctaacccaccaaggcaaaaattgagtgcacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctanggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40348" stop="42589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40648" g_stop="41077" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="551" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42289" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="750" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E211339" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40648" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGC</genome_strand>
        <mrna_strand>TCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTANGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717424" ref_strand="+" ref_description="SGN-E717424 [FC01AG05]">
      <seq>cacctcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40469" stop="44097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40769" g_stop="41077" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="430" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="651" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="825" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43768" g_stop="43797" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="855" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E717424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40769" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="43797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTG</genome_strand>
        <mrna_strand>CACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316451" ref_strand="+" ref_description="SGN-E316451 [cTOA-25-L10]">
      <seq>tcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgtccnttagagaaaaggcattttttaacgtgctattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40473" stop="42978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40773" g_stop="41077" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="426" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="647" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42678" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="719" r_length="72" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E316451" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40773" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTA</genome_strand>
        <mrna_strand>TCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTCCNTTAGAGAAAAGG-CATTTTTTAACGTGCTATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270236" ref_strand="+" ref_description="SGN-E270236 [cLEM-1-B18]">
      <seq>tcaagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40473" stop="41637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40773" g_stop="41077" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="426" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E270236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40773" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</genome_strand>
        <mrna_strand>TCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290241" ref_strand="+" ref_description="SGN-E290241 [cLET-5-O24]">
      <seq>caagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40474" stop="42560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40774" g_stop="41077" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="425" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42260" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="595" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E290241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40774" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAG</genome_strand>
        <mrna_strand>CAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378292" ref_strand="+" ref_description="SGN-E378292 [TUS-33-B23]">
      <seq>aagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcanaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcaggcattgaagcagatgattgctncatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacactctattccgggacgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40475" stop="44136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40775" g_stop="41077" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="424" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="645" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="819" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43768" g_stop="43836" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="887" r_length="68" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E378292" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40775" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="43836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTC</genome_strand>
        <mrna_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCANAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGGCATTGAAGCAGATGATTGCTNCATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAAC-ACTCTATTCCGGGACGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374182" ref_strand="+" ref_description="SGN-E374182 [TUS-33-B23]">
      <seq>aagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40475" stop="42944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40775" g_stop="41077" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="424" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="645" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42644" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="684" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E374182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40775" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTT</genome_strand>
        <mrna_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305817" ref_strand="+" ref_description="SGN-E305817 [cLEX-14-L5]">
      <seq>aagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaagaaaatgtgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40475" stop="42612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40775" g_stop="41077" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="424" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="645" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42612" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="652" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E305817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40775" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATG</genome_strand>
        <mrna_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAA......................................................................................................................................................................................................................................................................................................GAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300477" ref_strand="+" ref_description="SGN-E300477 [cLET-45-B4]">
      <seq>aagataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40475" stop="42473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40775" g_stop="41077" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="424" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42173" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="507" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E300477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40775" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGG</genome_strand>
        <mrna_strand>AAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310381" ref_strand="+" ref_description="SGN-E310381 [cTOA-10-C22]">
      <seq>gataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtggccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagagggtacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtgagggaaatgatgagtgctacaagtgtagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40477" stop="42521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40777" g_stop="41077" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="422" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42221" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="553" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E310381" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40777" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGAT</genome_strand>
        <mrna_strand>GATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTGGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGGTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTGAGGGAAATGATGAGTGCTACAAGTGTAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342713" ref_strand="+" ref_description="SGN-E342713 [cTOF-7-A13]">
      <seq>ataaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40478" stop="42924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40778" g_stop="41077" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="421" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="642" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42624" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="661" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E342713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40778" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAG</genome_strand>
        <mrna_strand>ATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702882" ref_strand="+" ref_description="SGN-E702882 [FA19DH01]">
      <seq>aaagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccangctcagcaaaacaactctattccgggacgcttccatccagacatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40480" stop="44150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40780" g_stop="41077" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="419" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="640" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="814" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43768" g_stop="43850" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="897" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E702882" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40780" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="43850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTT</genome_strand>
        <mrna_strand>AAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCANGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332003" ref_strand="+" ref_description="SGN-E332003 [cTOD-16-P13]">
      <seq>aagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaatgttcacaaggaaaatgtgatgctgaaaagcaaaattgagtgttccttagagaaaaggcatttttaaacgtgctattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40481" stop="42977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40781" g_stop="41077" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="418" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="638" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42677" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="708" r_length="70" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E332003" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40781" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCT</genome_strand>
        <mrna_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTG-AAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAA-AGCAAAATTGAGTGTTCCTTAGAGAAAAGG-CATTTTTAAACGTGCTATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314857" ref_strand="+" ref_description="SGN-E314857 [cTOA-20-P14]">
      <seq>aagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40481" stop="42605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40781" g_stop="41077" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="418" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42305" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="633" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E314857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40781" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTT</genome_strand>
        <mrna_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312346" ref_strand="+" ref_description="SGN-E312346 [cTOA-5-B11]">
      <seq>aagcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40481" stop="42427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40781" g_stop="41077" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="418" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42127" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="455" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E312346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40781" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGA</genome_strand>
        <mrna_strand>AAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549139" ref_strand="+" ref_description="SGN-E549139 [TUS-67-K15]">
      <seq>gcttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40483" stop="43007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40783" g_stop="41077" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="416" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="637" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42707" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="739" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E549139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40783" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGAT</genome_strand>
        <mrna_strand>GCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307509" ref_strand="+" ref_description="SGN-E307509 [cLEY-24-E5]">
      <seq>cttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40484" stop="42522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40784" g_stop="41077" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="415" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42222" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="547" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E307509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40784" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATG</genome_strand>
        <mrna_strand>CTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308427" ref_strand="+" ref_description="SGN-E308427 [cLEY-25-H6]">
      <seq>cttcgaatccccaaaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcaacgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctctggaagagtccggcaatgacttggatgctgctattaacaggttacatgagcttcaccttgtgtatggcgatgcaaagacagctgctgatggagagatggataatggagaaaaaccaactaacgggccatatgttcaatctgaaggtcctgctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcacggaaatgatgagtgctacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40484" stop="42513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40784" g_stop="41077" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="415" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42213" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="538" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E308427" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40784" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTG</genome_strand>
        <mrna_strand>CTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAACGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTCTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAACAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGCTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCATATGTTCAATCTGAAGGTCCTGCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCACGGAAATGATGAGTGCTACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320544" ref_strand="+" ref_description="SGN-E320544 [cTOB-22-E12]">
      <seq>aaacctttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttttttcattttctttcttgtttttagttatcttttttaaattcacagttttgatgttttccttgtataacaatatctgatatatatatatatatatatatatatatatgtttatctttttatgatgtactgtttaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40497" stop="41637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40797" g_stop="41336" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E320544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40797" e_stop="41336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</genome_strand>
        <mrna_strand>AAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318610" ref_strand="+" ref_description="SGN-E318610 [cTOB-9-D15]">
      <seq>ttagactcgcaaaaaaccctaattccaattccaatttcatttcatattatcagcaaaattagtttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgacaccgcattaacgttgccgcctgtttccaaaaagattcggtgcttttcctctacttttcccggtcgggtcccgaccaggttgatcgaacaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40503" stop="41590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40803" g_stop="41077" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41290" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="349" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E318610" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40803" e_stop="41077"/>
          <exon e_start="41216" e_stop="41290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTT</genome_strand>
        <mrna_strand>TTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGACACCG-CATTAACGTTGCCGCCTGTTTCCAAAAAGATTCGGTGCTTTTCCTCTACTTTTCCCGGTCGGGTCCCGACCAGGTTGATCGAACAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247956" ref_strand="+" ref_description="SGN-E247956 [cLEF-47-L20]">
      <seq>ttgatctgccgagaggcagacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40566" stop="42565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40866" g_stop="41077" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="333" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42265" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="508" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E247956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40866" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATC</genome_strand>
        <mrna_strand>TTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246638" ref_strand="+" ref_description="SGN-E246638 [cLEF-45-A17]">
      <seq>gaggcagacggagatttacaatgtctgcaggggtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacaggtgctgatggagagatggataatggagaaaaaccaagtaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcacaatgggtggagttgcttgtcacggaaatgatgagtgctacaagtgtagatgatgccagggctaaggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40578" stop="42612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40878" g_stop="41077" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="321" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="542" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42612" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="549" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E246638" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40878" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATG</genome_strand>
        <mrna_strand>GAGGCAGACGGAGATTTACAATGTCTGCAGGGGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGGTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAAGTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCACAATGGGTGGAGTTGCTTGTCACGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAAGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272943" ref_strand="+" ref_description="SGN-E272943 [cLEM-25-P16]">
      <seq>gcacacggagatttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttgccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcacgttgatgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccataataatgttccagctgatggtgcacaatgggtggagtcgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaatggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcaacagctgaaaatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40581" stop="42607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40881" g_stop="41077" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="318" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42307" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="535" r_length="217" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E272943" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40881" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCA</genome_strand>
        <mrna_strand>GCACACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTGCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAC..........................................................................................................................................GTTGATGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCATAATAATGTTCCAGCTGATGGTGCACAATGGGTGGAGTCGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAATGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAACAGCTGAAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336967" ref_strand="+" ref_description="SGN-E336967 [cTOE-5-L15]">
      <seq>ttacaatgtctgcaattgtctgcggcaagagatctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40593" stop="41637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40893" g_stop="41077" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="306" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E336967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40893" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</genome_strand>
        <mrna_strand>TTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699759" ref_strand="+" ref_description="SGN-E699759 [FA11AE08]">
      <seq>ctttcttcgaagatttacaatcgccgtcgccgacatcagcgtcgccgcctgtttccaagaagattcgttgctcttcctctacttctccggttcggttcccgaccagtttgatcgatcaactgagaactttgtttcctgatatggataatcaggttgttgagaaggctttggaagagtccggcaatgacttggatgctgctattaagaggttacatgagcttcaccttgtgtatggcgatgcaaagacagttgctgatggagagatggataatggagaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40626" stop="44251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40926" g_stop="41077" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41216" g_stop="41336" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="273" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="494" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="668" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43768" g_stop="43951" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="852" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E699759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40926" e_stop="41077"/>
          <exon e_start="41216" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="43951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATG</genome_strand>
        <mrna_strand>CTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG..........................................................................................................................................GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545026" ref_strand="+" ref_description="SGN-E545026 [TUS-67-K15](-)">
      <seq>atgcaaagacagttgctgatgangagatggataatgangaaaaaccaactaacgggccagatgttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41001" stop="44435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41301" g_stop="41336" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42091" g_stop="42311" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="257" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="431" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="798" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="809"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E545026" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41301" e_stop="41336"/>
          <exon e_start="42091" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAAGACAGTTGCTGATGGAGAGATGGATAATGGTATGTGTCCAATAATTACTTCCCCTATTTGCCTGATTCTTTTGATGCTCCAGGTTTTTAGCTGTCGCACTTGCTTATTATACATTGATATCCCATTTATGAGGTTGTAAAGAGATACATATATATGAGAATGTGATGTTTCTCTGGTGTTGAATAATTGTCGGGAGAAGTAGAACTCTCTGTCTTGCATCAACATAAGTAGATGGTTGGATGATCAATTTGTGCTGATTAATCATGTTGTTGAATCAATACTAATATTCCTAGAATGGTGTTTTTAGACTGCCTGATATGGGGACATCAAGTATTAGTTTTATTGTGCTTTGTAGTCTCTGAAAGAGACATTTAGACTTTTAATGGGAAGTTTCTAACCTTGTCAATCAACAATCAGTAGATGAAGTCTCAAACTGAGACTAGTTGGGGTGGCTATAAGAGTACTCTATATCTATTCAATTGTATTGCTGCCCATTTCATCCTTTATACATGAGAGCAAGAAGGTAATAATAAACTAGCATGAGATGTCAAGTGTTTTTATATCTACATAACTGCATGTCTTTTACGTGTATGTGTTTACTGTAGAGGTGTATGAAACTATTTATGTGAGCTCTCACGTGTTCTAGATAAGTAGCTCTCTGATGTATATCTATTATTATAAGGATGTTAAGACTACCTTTGTGCGTCCACCACTTTTTGGTCTGTAATGTTTACCATGCTACTTCTTGTGAATCACAAACCTAATCAATCAAGCCTCATGCAGGAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA</genome_strand>
        <mrna_strand>ATGCAAAGACAGTTGCTGATGANGAGATGGATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ANGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354488" ref_strand="+" ref_description="SGN-E354488 [cTOS-17-L22]">
      <seq>ttcaatctgaaggtcctcctctccagaataatcttccagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41818" stop="44433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42118" g_stop="42311" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="368" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43768" g_stop="44133" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="734" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E354488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42118" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTAT</genome_strand>
        <mrna_strand>TTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323439" ref_strand="+" ref_description="SGN-E323439 [cTOC-7-G8]">
      <seq>tctgaaggtcctcctctccagaataatcttccagctgatggtgcagagtgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtacaaactggagctttagaggccaacttttcctgatgtggtttatctttttaatctgggatttttagttttatttttgtttacgggtagtggtcttactgtttttggttctcatattttttaatgaacacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41823" stop="43215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42123" g_stop="42311" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42606" g_stop="42915" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="499" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E323439" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42123" e_stop="42311"/>
          <exon e_start="42606" e_stop="42915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATT</genome_strand>
        <mrna_strand>TCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAGTGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374181" ref_strand="+" ref_description="SGN-E374181 [TUS-33-B23](-)">
      <seq>cagctgatggtgcagaatgggtggagttgcttgtcagggaaatgatgagtgctacaagtgtagatgatgccagggctagggccacaagggtgttggagagcctggagcgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41854" stop="44435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42154" g_stop="42311" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="332" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="699" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E374181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42154" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA</genome_strand>
        <mrna_strand>CAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348570" ref_strand="+" ref_description="SGN-E348570 [cTOF-30-C11]">
      <seq>cgatcaattagtgttcatgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccaggaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41961" stop="44424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42261" g_stop="42311" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="225" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43768" g_stop="44124" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="582" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E348570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42261" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATA</genome_strand>
        <mrna_strand>CGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206185" ref_strand="-" ref_description="SGN-E206185 [cLEC-29-I5]">
      <seq>atgctggtgctgcagcagctgaaaatgttcacaaggaaaatgtgatgctgaaagagcaaattgaagtgttccttagagaaaaggccatttttaaacgtgctattgctatccaacacgaaaggcaaaaagagtatgatgatagaaaccagnaagtgcagcaattgaagcagatgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41977" stop="69502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42277" g_stop="42311" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42606" g_stop="42779" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="209" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43768" g_stop="44124" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="566" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44125" i_stop="44657" i_length="533">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44658" g_stop="44668" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="577" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44669" i_stop="44894" i_length="226">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="0.590" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44895" g_stop="44909" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="591" r_length="14" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E206185" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42277" e_stop="42311"/>
          <exon e_start="42606" e_stop="42779"/>
          <exon e_start="43768" e_stop="44124"/>
          <exon e_start="44658" e_stop="44668"/>
          <exon e_start="44895" e_stop="44909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAGGTTGGTATTAGATGGTGTAGCCTTTGATGTCATTGTAGGACGAGAAATTGCTGGCATTCACACACTTATCTTTTTTCTGCTACATTTACGAAGCTTTCGACAAAAAAAAAGTGCTAACACCTATGTTGCTTCGTTTTTTGTGCAGTATGTCTTTTCTTTATTGAGGTAGTCTAGTGCTTCTTTGGTTGAAGTACGACAATGACACTCATGCTTTATAATTTATCACGTTGACCTAATTTTCTGAGGTTCACCTTCAATTCTTTAGATGTTGGCCTTATTACTTCTTTTTTTCAGGAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAAGGGGTGACAATACGTTGCTATATTATTTCACATAAAACGTGTTGTTCTATATATGAATTGGCAATTGATTGAAGCGCGTAGTAATATCGCACCACATCTTCTTCTTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGA</genome_strand>
        <mrna_strand>ATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG......................................................................................................................................................................................................................................................................................................GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGNAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA..................................................................................................................................................................................................................................AAAACT-CGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227230" ref_strand="+" ref_description="SGN-E227230 [cLEL-30-B3](-)">
      <seq>atgattgctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaccataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42441" stop="69495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42741" g_stop="42779" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43768" g_stop="44124" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="396" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44125" i_stop="44530" i_length="406">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44531" g_stop="44548" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="414" r_length="18" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E227230" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42741" e_stop="42779"/>
          <exon e_start="43768" e_stop="44124"/>
          <exon e_start="44531" e_stop="44548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAAGGGGTGA</genome_strand>
        <mrna_strand>ATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAACCATA......................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223814" ref_strand="+" ref_description="SGN-E223814 [cLEL-19-J24](-)">
      <seq>gctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42447" stop="69495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42747" g_stop="42779" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="400" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44135" i_stop="44377" i_length="243">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44378" g_stop="44393" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="416" r_length="16" r_score="0.812"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44394" i_stop="44530" i_length="137">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44531" g_stop="44541" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="427" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E223814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42747" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
          <exon e_start="44378" e_stop="44393"/>
          <exon e_start="44531" e_stop="44541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAA</genome_strand>
        <mrna_strand>GCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA...................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA.........................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223945" ref_strand="+" ref_description="SGN-E223945 [cLEL-19-J24](-)">
      <seq>gctcaatatcaggaacaaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42447" stop="69495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42747" g_stop="42779" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="400" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44135" i_stop="44377" i_length="243">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44378" g_stop="44393" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="416" r_length="16" r_score="0.812"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44394" i_stop="44530" i_length="137">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44531" g_stop="44541" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="427" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E223945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42747" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
          <exon e_start="44378" e_stop="44393"/>
          <exon e_start="44531" e_stop="44541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAA</genome_strand>
        <mrna_strand>GCTCAATATCAGGAACAAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA...................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA.........................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227165" ref_strand="+" ref_description="SGN-E227165 [cLEL-30-D15](-)">
      <seq>aaataaaaaatcttgaggtgaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttttagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaccggtttgcgtgttgagttgaagcccctttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42463" stop="69495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42779" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="384" r_length="367" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44135" i_stop="44369" i_length="235">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44370" g_stop="44399" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="414" r_length="30" r_score="0.633"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44400" i_stop="44530" i_length="131">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44531" g_stop="44541" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="425" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E227165" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
          <exon e_start="44370" e_stop="44399"/>
          <exon e_start="44531" e_stop="44541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAA</genome_strand>
        <mrna_strand>AAATAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTTTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTACCGGTTTGCGTGTTGAGTTGAAGCCCCTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA...........................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227671" ref_strand="+" ref_description="SGN-E227671 [cLEL-30-D15](-)">
      <seq>taaaaaatcttgaggtgaataattatgcgttgacaatgcatttgccccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttttagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatccaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgtttagtttaaacccctttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctccaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42466" stop="69495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42766" g_stop="42779" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988">
            <donor d_prob="0.869" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43768" g_stop="44134" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="381" r_length="367" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44135" i_stop="44369" i_length="235">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44370" g_stop="44399" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="411" r_length="30" r_score="0.633"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44400" i_stop="44530" i_length="131">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44531" g_stop="44541" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="422" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E227671" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42766" e_stop="42779"/>
          <exon e_start="43768" e_stop="44134"/>
          <exon e_start="44370" e_stop="44399"/>
          <exon e_start="44531" e_stop="44541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATTGTGATATTTTTTAGCTGCTTATACTGCCAAGTCTGTGTTACGGTAATATAGTTCCTCTGTGGCATGTCATGAACATAGGCACAGAGTCTAACTTATGCTGAATTTTGTGTTCTATTCGTAGTGGTTAAAAAAAATCATTTAATAGTTACTGATAAGTTAGTTTGATGGAGCGTATGTTTAATTTTTGAAGTTGTATTGATTGAAATCATATAATTGCAAATATTTATTTTGTTAGCTTACATGGTCTTAGTATAGTTTCTCTTTGTAAGCAACTTAATCTATGTCTTTTGCAACCTTTGCATCTATTTATGCTTTAAATGAATTTTACTTCATAAAAGAAATTGCAAATACTCTTACCGTACCAAATTGCAAAGATTATCATAAAATGGGATGCAGGGAGTATAATATATGTTATATACCCTAGACCTTCAAGAGTAACAATTCTACTTTAAGAATGTCTGCTGTACTTGTATATGTTGGAGGCAGTGCAGATCATCGTGAAAACTGCTAGTTAACTTTAATAAAATGATTGAAGCATACTTCTTTATTGCCTGGTAAAATATTCTGTAGGCATTAGTTCAAGCTAGTAGCACCTGTATTCTTAGGTAAAAGAAAATATTGGCATAAAGATGTCGCATTACTGCTATGCATGTTGCAGTTTACCTGTATTGTTCTTTTTCCTGTTCTTTATACTCTGAACGTGAGTAATTTTGTGAACAATTGCATAGTGCCCCATACGTAAGCAGATAGGAGAATAAAGTATTCTTCTGTTCCTTTTTCTGTGTTTTTAATGGAATGAATGCAAACAAGATTGTCTACTCATTATTCCTAACTTAATGGTCATGGTTGCAGGTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGATTTCTGTGTCAATTTGTTTTCCTGCGTCTGAGGAGGGGCTTCGATTATGAGTAATGCCATTAGGTTGGCAATTGTTGGTTTACGCCGGGGTTTTGTTTCCTTTCAAAATTGCAATTCATGATTATTATTTTCCTATCAAGCTTAGACTATAGTGGTGTCCAAATATCTGGTGTTCTAATTATGTAAAAAAAAAAAACCGAGTACAATGATTTTTGCCAATTGGAATCAACAAATGCGGATATTGTTATAGTTTTATTATTACAGTATATAAATAGAATACATGGAACTTATAATATAGGTTATTTTTCTCATTAATTCCAAATTTTATTTTTTTTAGAAAGATAATAA</genome_strand>
        <mrna_strand>TAAAAAATCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATTATGCGTTGACAATGCATTTGCCCCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTTTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCCAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTTAGTTTAAACCCCTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCCAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA...........................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224661" ref_strand="+" ref_description="SGN-E224661 [cLEL-27-D2](-)">
      <seq>gaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactcctttccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataattttgctttctgcttctcagtttgttctacaatttttttgctgtgatgaatgaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43470" stop="44494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43770" g_stop="44194" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E224661" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43770" e_stop="44194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGAT</genome_strand>
        <mrna_strand>GAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCCTTTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227593" ref_strand="+" ref_description="SGN-E227593 [cLEL-30-B3](-)">
      <seq>gaataattatgcgttgacaatgcatttgcaccaggctcagcaaaacaactctattccgggacgcttccatccagacatcttctagtgcggaggctagtccagttaaagctgtggaacatacaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43470" stop="44296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43770" g_stop="43996" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E227593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43770" e_stop="43996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGT</genome_strand>
        <mrna_strand>GAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224585" ref_strand="+" ref_description="SGN-E224585 [cLEL-27-D2](-)">
      <seq>ctagtccagttaaagctgtggaacataccaaagaaacaagcttgttggcatcttgtcagctgtgatataggatgtattaatcaaattatgaatcaatgttgtttttataattagattgagtaacggtttgcgtgttgagttgaagccactttggtggatgaccctggtcaagtaagtagtgttgtactggacatcgtccaaatggtgaagtcctcaaacgtgctagtatttaactaatatcagaaaactggctataaaacatactttgctataattttgctttctgcttctcagtttgttctacaatttttttgctgtgatgaatgaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43563" stop="44494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43863" g_stop="44194" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E224585" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43863" e_stop="44194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTCCAGTTAAAGCTGTGGAACATA-CAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGAT</genome_strand>
        <mrna_strand>CTAGTCCAGTTAAAGCTGTGGAACATACCAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312416" ref_strand="+" ref_description="SGN-E312416 [cTOA-5-P22]">
      <seq>ttctttcttgtgaaaaaaaagaagcaagcgagcatcaaggcgcgggacagttaaccagtcttctgtagtccaatgaactcgacggcaatggccagcacagcatctctatctctccgtccttcttctctcatctccgaccgttcccattctccctgtcttcctccttcctcctcctctagtttcttctccggtgggacccgcttgtgggcccatacgaagtttatatccatttccttttcttcatctcagaagattccgggacgacgttttgggagattggtggttgctgctgctgccgattattactctacacttggggtcccaaaatctgctaacagtaaagacatcaaggctgcttatcgaaggttagctcgacagtatcaccctgatgtcaacaaggaacctaatgcaccagaaaagtttaaggagattaaagatgcttatgagatactatcagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44346" stop="45945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44646" g_stop="45023" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45024" i_stop="45573" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45574" g_stop="45642" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="447" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E312416" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44646" e_stop="45023"/>
          <exon e_start="45574" e_stop="45642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAGGTACTGCAATCCTTTCTTTCTTATTCTTAATTCTAACTATTATTCACTGTCATTGTGAGAATCAATTTTTAAGAAAACAACCAAATGATGCTCCTTCGGAATTTTTGAGAAAACGGTTACACAAAATGATGATTTTCAAAATTGTGACTTAGGTTGGTCGTGCATTTGAGCTCCAAGAAAGTAATCTTGTGGCTGACCAGTGCATTTTCCTTTGGGATAACAGCACAAGTTGCTAATTATTAGTTTCCGTTCCTATTTCAATTATTTTATGCTACTGTTTGATCTCTTTATTTGTATGGTTGAGCTGCCTCTATTCCGGAAGCTGATGCGTTATGAATCATTGGTCTGCATGTGTTATCTTTTTCTTTGTGTTGTTGATTGTTTACTTTCTGTGCGTGTCCATATGATACATACTCTAGTAGGATAATGTTACCACTACATGCTAGACTTTCACCCAGTTCTTTGGGCCTTTACAATTAAGATAGTTCCACAGCAACACATTATTCTATTCTCCATTAATCCGTTTCTGACTTTTGATATTGTTTTATAGTATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG</genome_strand>
        <mrna_strand>TTCTTTCTTGTGAAAAAAAAGAAGCAAGCGAGCATCAAGGCGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358165" ref_strand="+" ref_description="SGN-E358165 [cLHT-23-I1]">
      <seq>ttcctccttcctcctcctttagtttcttctccggtgggacccgcttgggggcccatacgaagtttatatccattcccttttcttcatctcagaagattccgggacgacgtttcgggagattggtggttgctgctgctgccgattattactctacacttggggtcccaaaatctgctaacagtaaagacatcaaggctgcttatcgaaggttagctcgacagtatcaccctgatgtcaacaaggaacctaatgcaccagaaaagtttaaggagattaaagatgcttatgagatactatcagatgacaaaaaaagagcactatatgatcaatatggtgaagccggggtgaaaagttctgtaggggcccaagccggtgcttacacgacaaatccttttgatctatttgagacattctttggaccttctatgggtggttttggaatggatggagctggatttggaacgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44503" stop="47657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44803" g_stop="45023" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45024" i_stop="45573" i_length="550">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45574" g_stop="45642" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="290" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45643" i_stop="46020" i_length="378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46021" g_stop="46113" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47274" g_stop="47357" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="467" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E358165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44803" e_stop="45023"/>
          <exon e_start="45574" e_stop="45642"/>
          <exon e_start="46021" e_stop="46113"/>
          <exon e_start="47274" e_stop="47357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAGGTACTGCAATCCTTTCTTTCTTATTCTTAATTCTAACTATTATTCACTGTCATTGTGAGAATCAATTTTTAAGAAAACAACCAAATGATGCTCCTTCGGAATTTTTGAGAAAACGGTTACACAAAATGATGATTTTCAAAATTGTGACTTAGGTTGGTCGTGCATTTGAGCTCCAAGAAAGTAATCTTGTGGCTGACCAGTGCATTTTCCTTTGGGATAACAGCACAAGTTGCTAATTATTAGTTTCCGTTCCTATTTCAATTATTTTATGCTACTGTTTGATCTCTTTATTTGTATGGTTGAGCTGCCTCTATTCCGGAAGCTGATGCGTTATGAATCATTGGTCTGCATGTGTTATCTTTTTCTTTGTGTTGTTGATTGTTTACTTTCTGTGCGTGTCCATATGATACATACTCTAGTAGGATAATGTTACCACTACATGCTAGACTTTCACCCAGTTCTTTGGGCCTTTACAATTAAGATAGTTCCACAGCAACACATTATTCTATTCTCCATTAATCCGTTTCTGACTTTTGATATTGTTTTATAGTATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAGGTAAATATGAAAATTTACTATTTTTAACATCTGAACCCTGGTAGTTTTCTTATTTCCTTCTGAAACTATTGACCTTTAGATATATGTGGCATTGCCATCTTTATGTCCCCTCCCCTCCCCTTTACGTGATGGAATTACTGTTTATCCACTTATTCAATCCGTTTCTTCATTCCTCTACCTTGGAAACTGCATTGGTTGTCTGTCTACTAAATCCAAAGTGTTCCATTTTCTCGTATATTTTGAAAGTTGTGTGCTTTTTAACTAAGGTAGACCTTAGAAATTCCTACTTTCAAACTTTGGAATCTTGGTGTTAGTATGTTTACATATTTCTCTTTTGTTTTTAACTCTTTGAATCAACTCTGAAGTTTCACTTTCCAGATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACGGTATGCCATAAATTCTTATTTTTTTTGTTTTCAGCGTGATATTATTGCTGTCATTCCAAAAGGGTAATCTTAATTTCCTTTAGTCCTTCCAAAATTAACATCCACTTTATTTAAAAGAGAAGTTTTAAGTCATGTTATAGAACACACATTGTATGCCCAACTTTTACTCTTCTTATGCAACTTCTATTATATTTGTCGATAACTTTTATGGCCCAGCATGTTATCCATACACAACTCATTTTCAACTTTTTTCTTAGTTCCCCTGCCAATTCCAAGTAGGACGATGAAATTGTGACTTGGAAGTACTATCATGGCTTATCAAAGAAAAGATACATATCATGATAAAATTTTCTCACGTAGTTACTTGGCTCCCTCTGATGTGAAGTCCTTATGTTGCTTTTGCTCATATCGTTTGTTTAATTCATGTTTTTCTCTAATTGGTGACTTTTAGGTGTGCCATCTATTTTAGATTACATACTCAATATAGTTCAGTTATGTTCTTGTACTATAGTTTACATACATAATATCTGCAAGTTTTTGGGAGTTCTAGGTTTCCAGTATTTGTCCCTCCAACCACTATAAGTGCTAATTCTTTTGCCTTCTATTGTTCCCATCCCCACTTGAAGAGGAATTGACAAGGTTCATAGAATTCTTTGTGGTCATTCAATTGTAAATGGGAAAAGAGTTCTTTTCACTTATGTTGAATGACACACCAGGGGTAATATCAGTTACTTTGCCATACCTCCTGGCTCATCCCACCACTTAAAAAGGAGTTAAATATTAGTTCAAGTAAGATTATGGATGAAAAGAATAGAATACTTCATGCCTATGTAGGTAAATGTATATCAATTTGCATATAGAATGCCAAATGAAAGAGTTGATGCACAACTTTGGTTTCTGTTTACATGCTGTCGTTTTGCATGCTAGCCAAAAAATTGGGTTTTGTTTGATGTAGGACTGAGAGTTGAGTCTAAGTAAATGTGTCAATGTGTGAAGGTTGCGTTCCTAGATGCTATTCTTCTAATTATTCACTTCCCAAAAAGGGTAAAATGAGTAGGTCGTAGAAGAAAGTGGGAAGTTACATAATAAGTGCATGGTCATATGGAAATTATCTTTAACCCTAGTCTGTTTCTCTTTCTTTTTGGTGAATTTTACTGCAGACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGT</genome_strand>
        <mrna_strand>TTCCTCCTTCCTCCTCCTTTAGTTTCTTCTCCGGTGGGACCCGCTTGGGGGCCCATACGAAGTTTATATCCATTCCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTCGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG..........................................................................................................................................................................................................................................................................................................................................................................................ATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214166" ref_strand="+" ref_description="SGN-E214166 [cLEC-77-E3]">
      <seq>ttatcgaaggttagctcgacagtatcaccctgatgtcaacaaggaacctaatgcaccagaaaagtttaaggagattaaagatgcttatgagatactatcagatgacaaaaaaagagcactatatgatcaatatggtgaagccggggtgaaaagttctgtaggggcccaagccggtgcttacacgacaaatccttttgatctatttgagacattctttggaccttctatgggtggttttggaatggatggagctggatttggaacgcgtcgccgcagtactgttaccaagggtgaagatctacgttacgacatgacattagaattttcagcggctatctttggagctgaaaaagatttcgagctttcacatcttgaaacttgtgaggtctgtgtgggaactggggcaaaggtaggctccaaaatgaggatatgttcaacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45256" stop="48591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45574" g_stop="45642" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45643" i_stop="46020" i_length="378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46021" g_stop="46113" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="184" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47274" g_stop="47392" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="303" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47393" i_stop="48152" i_length="760">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48153" g_stop="48291" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="442" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E214166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45574" e_stop="45642"/>
          <exon e_start="46021" e_stop="46113"/>
          <exon e_start="47274" e_stop="47392"/>
          <exon e_start="48153" e_stop="48291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAGGTAAATATGAAAATTTACTATTTTTAACATCTGAACCCTGGTAGTTTTCTTATTTCCTTCTGAAACTATTGACCTTTAGATATATGTGGCATTGCCATCTTTATGTCCCCTCCCCTCCCCTTTACGTGATGGAATTACTGTTTATCCACTTATTCAATCCGTTTCTTCATTCCTCTACCTTGGAAACTGCATTGGTTGTCTGTCTACTAAATCCAAAGTGTTCCATTTTCTCGTATATTTTGAAAGTTGTGTGCTTTTTAACTAAGGTAGACCTTAGAAATTCCTACTTTCAAACTTTGGAATCTTGGTGTTAGTATGTTTACATATTTCTCTTTTGTTTTTAACTCTTTGAATCAACTCTGAAGTTTCACTTTCCAGATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACGGTATGCCATAAATTCTTATTTTTTTTGTTTTCAGCGTGATATTATTGCTGTCATTCCAAAAGGGTAATCTTAATTTCCTTTAGTCCTTCCAAAATTAACATCCACTTTATTTAAAAGAGAAGTTTTAAGTCATGTTATAGAACACACATTGTATGCCCAACTTTTACTCTTCTTATGCAACTTCTATTATATTTGTCGATAACTTTTATGGCCCAGCATGTTATCCATACACAACTCATTTTCAACTTTTTTCTTAGTTCCCCTGCCAATTCCAAGTAGGACGATGAAATTGTGACTTGGAAGTACTATCATGGCTTATCAAAGAAAAGATACATATCATGATAAAATTTTCTCACGTAGTTACTTGGCTCCCTCTGATGTGAAGTCCTTATGTTGCTTTTGCTCATATCGTTTGTTTAATTCATGTTTTTCTCTAATTGGTGACTTTTAGGTGTGCCATCTATTTTAGATTACATACTCAATATAGTTCAGTTATGTTCTTGTACTATAGTTTACATACATAATATCTGCAAGTTTTTGGGAGTTCTAGGTTTCCAGTATTTGTCCCTCCAACCACTATAAGTGCTAATTCTTTTGCCTTCTATTGTTCCCATCCCCACTTGAAGAGGAATTGACAAGGTTCATAGAATTCTTTGTGGTCATTCAATTGTAAATGGGAAAAGAGTTCTTTTCACTTATGTTGAATGACACACCAGGGGTAATATCAGTTACTTTGCCATACCTCCTGGCTCATCCCACCACTTAAAAAGGAGTTAAATATTAGTTCAAGTAAGATTATGGATGAAAAGAATAGAATACTTCATGCCTATGTAGGTAAATGTATATCAATTTGCATATAGAATGCCAAATGAAAGAGTTGATGCACAACTTTGGTTTCTGTTTACATGCTGTCGTTTTGCATGCTAGCCAAAAAATTGGGTTTTGTTTGATGTAGGACTGAGAGTTGAGTCTAAGTAAATGTGTCAATGTGTGAAGGTTGCGTTCCTAGATGCTATTCTTCTAATTATTCACTTCCCAAAAAGGGTAAAATGAGTAGGTCGTAGAAGAAAGTGGGAAGTTACATAATAAGTGCATGGTCATATGGAAATTATCTTTAACCCTAGTCTGTTTCTCTTTCTTTTTGGTGAATTTTACTGCAGACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACGGTAAGTCAGTAGCTGATTGGAATGATTTGACACTAACCATCTTTATTAGAATTCACGTGTGTACTTATAACAAAAAGGATTTTGTCATAAGTATACTTCGTTAACCATGAGAAGAAGCAGTTTCTGATAACTAATATGCAACATAGTATGACAGGTAAACTTAGGAGGAATATAGCCTCTAGTCGATTTTATAGCAGTGGTGAAGCATATAGTTCCCTTAGAATGATAATTTGTAGAATAAAGTAGACCTTCTCGAAATCATGGTCACAATTATTGCTAACCAAGAGGGGAAAGTTCATTCGGACAACTTTATAGGCTAACATAGTATGATTTGACATTTGGTAAAACATAAGAACCAACAAGTCCTAACACCATTCCAAAGTAGTGCTGGAGTCTTCATTAGGAATCAGTTACCAGTTTCATTTATATTCATGTTATCTGTACTTATAACCTGAAGAAAAAACTGAGTATGATATTCAGCATACTTTTGTGCTTGAAATGGTCTTTGCATGAATTACAATTTACAGGTATGCTTTTCTTTAACATATCAATCCTCTGACAGAAAGAACTATGCTAAGTTCAAACTGGACGGGCTAATTGTGTATACTTGCACCAGTGAAGCATAAAATTTATCCTAGGAACAATGCATACTTTAGAAGCATAAAAATAGAAATAGATAGACACTGTTTCATAAACACTAAGAGTTTGCAGATAAAATGATATGATGTCAAGCCTAATTTTGCACTTCAATGGCTTTCAGTTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGT</genome_strand>
        <mrna_strand>TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG..........................................................................................................................................................................................................................................................................................................................................................................................ATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727783" ref_strand="+" ref_description="SGN-E727783 [LA15CH08]">
      <seq>ggactatatgatcaatatggtgaagccggggtgaaaagttctgtaggggcccaagccggtgcttacacgacaaatccttttgatctatttgagacattctttggaccttctatgggtggttttggaatggatggagctggatttggaacgcgtcgccgcagtactgttaccaagggtgaagatctacgttacgacatgacattagaattttcagcggctatctttggagctgaaaaagatttcgagctttcacatcttgaaacttgtgaggtctgtgtgggaactggggcaaaggtaggctccaaaatgaggatatgttcaacttgtggtggccgaggtcaagttatgaggaccgaacaaacaccgtttggcatgttttctcaggtttctgtctgcccaaactgtggtggggatggtgaaatgatctctgaatattgtcgtaaatgctcaggcgaggggcggatacgagtgaagaaagatataaaagtcaagataccccctggagttaacaagggaagtatcctcagagttgctggtgagggtgatgcaggtcctaggggtgccccaccgggagatctttatgtctatcttgacattgaagagatacctgagatccaaagagatggcataaatctgatttcaacagtttcagtcggttatctagatgctatacttggggctgttgttaaggttaaaacagtggatggtttgactgatctccagattcctccaggcactcaacctggggatgtgcttgtcttggcaaggaaaggagcaccaaagctaaataagccatcaatacgcggtgatcacttgttcacgatttaagttagcataccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45745" stop="52606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46045" g_stop="46113" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47274" g_stop="47392" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="188" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47393" i_stop="48152" i_length="760">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48153" g_stop="48348" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="384" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48349" i_stop="49809" i_length="1461">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49810" g_stop="49985" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="560" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51437" g_stop="51566" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="690" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52155" g_stop="52306" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="842" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E727783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46045" e_stop="46113"/>
          <exon e_start="47274" e_stop="47392"/>
          <exon e_start="48153" e_stop="48348"/>
          <exon e_start="49810" e_stop="49985"/>
          <exon e_start="51437" e_stop="51566"/>
          <exon e_start="52155" e_stop="52306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACGGTATGCCATAAATTCTTATTTTTTTTGTTTTCAGCGTGATATTATTGCTGTCATTCCAAAAGGGTAATCTTAATTTCCTTTAGTCCTTCCAAAATTAACATCCACTTTATTTAAAAGAGAAGTTTTAAGTCATGTTATAGAACACACATTGTATGCCCAACTTTTACTCTTCTTATGCAACTTCTATTATATTTGTCGATAACTTTTATGGCCCAGCATGTTATCCATACACAACTCATTTTCAACTTTTTTCTTAGTTCCCCTGCCAATTCCAAGTAGGACGATGAAATTGTGACTTGGAAGTACTATCATGGCTTATCAAAGAAAAGATACATATCATGATAAAATTTTCTCACGTAGTTACTTGGCTCCCTCTGATGTGAAGTCCTTATGTTGCTTTTGCTCATATCGTTTGTTTAATTCATGTTTTTCTCTAATTGGTGACTTTTAGGTGTGCCATCTATTTTAGATTACATACTCAATATAGTTCAGTTATGTTCTTGTACTATAGTTTACATACATAATATCTGCAAGTTTTTGGGAGTTCTAGGTTTCCAGTATTTGTCCCTCCAACCACTATAAGTGCTAATTCTTTTGCCTTCTATTGTTCCCATCCCCACTTGAAGAGGAATTGACAAGGTTCATAGAATTCTTTGTGGTCATTCAATTGTAAATGGGAAAAGAGTTCTTTTCACTTATGTTGAATGACACACCAGGGGTAATATCAGTTACTTTGCCATACCTCCTGGCTCATCCCACCACTTAAAAAGGAGTTAAATATTAGTTCAAGTAAGATTATGGATGAAAAGAATAGAATACTTCATGCCTATGTAGGTAAATGTATATCAATTTGCATATAGAATGCCAAATGAAAGAGTTGATGCACAACTTTGGTTTCTGTTTACATGCTGTCGTTTTGCATGCTAGCCAAAAAATTGGGTTTTGTTTGATGTAGGACTGAGAGTTGAGTCTAAGTAAATGTGTCAATGTGTGAAGGTTGCGTTCCTAGATGCTATTCTTCTAATTATTCACTTCCCAAAAAGGGTAAAATGAGTAGGTCGTAGAAGAAAGTGGGAAGTTACATAATAAGTGCATGGTCATATGGAAATTATCTTTAACCCTAGTCTGTTTCTCTTTCTTTTTGGTGAATTTTACTGCAGACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACGGTAAGTCAGTAGCTGATTGGAATGATTTGACACTAACCATCTTTATTAGAATTCACGTGTGTACTTATAACAAAAAGGATTTTGTCATAAGTATACTTCGTTAACCATGAGAAGAAGCAGTTTCTGATAACTAATATGCAACATAGTATGACAGGTAAACTTAGGAGGAATATAGCCTCTAGTCGATTTTATAGCAGTGGTGAAGCATATAGTTCCCTTAGAATGATAATTTGTAGAATAAAGTAGACCTTCTCGAAATCATGGTCACAATTATTGCTAACCAAGAGGGGAAAGTTCATTCGGACAACTTTATAGGCTAACATAGTATGATTTGACATTTGGTAAAACATAAGAACCAACAAGTCCTAACACCATTCCAAAGTAGTGCTGGAGTCTTCATTAGGAATCAGTTACCAGTTTCATTTATATTCATGTTATCTGTACTTATAACCTGAAGAAAAAACTGAGTATGATATTCAGCATACTTTTGTGCTTGAAATGGTCTTTGCATGAATTACAATTTACAGGTATGCTTTTCTTTAACATATCAATCCTCTGACAGAAAGAACTATGCTAAGTTCAAACTGGACGGGCTAATTGTGTATACTTGCACCAGTGAAGCATAAAATTTATCCTAGGAACAATGCATACTTTAGAAGCATAAAAATAGAAATAGATAGACACTGTTTCATAAACACTAAGAGTTTGCAGATAAAATGATATGATGTCAAGCCTAATTTTGCACTTCAATGGCTTTCAGTTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAGGTAATAGCGTATAAATCTATTTCTTTGGTGGTCGAGATAATTTAGATTGCATTTGTATATCAATTTGTTCAGATTTTATTCATTTGGTATTACAGTATGAGTCTATTTTCAGGACTCCTGAGTCATTTTTGAGAAAATCAATCTGTTTGCTATTGCATGTACAGAGGATCAGCTGCTAATTAGGGGTATCAGTTTTAATTAATGGAAGTATAACCTTCCTCAACCTGTCTAGTTGGGTTGCAATAAACTCATTGATAGGTCAATTTTGGGCTTAATTTAAATTAAATGTTGTCTAGTTCGTATTCATCCACTTACTTTCTCTACCAAGATAAGAAAATGATGTTTTAACTTCATTTGGTAACTAAACAAATTGTAAAACATACACACAAATAACAGATGAAACGTAATTCTGAATTAACCAGGTGGGGCCATGGCTATAAATGTTTCGGCTCAAATTAACCTACTCTTCATGACACAAGTAAACTCTGGGTGGTTTAGCATGGTCCATATATACTCAATCTATTTTAACCCACGGCTCAAATTTGGCCCAACTTGCCAATTTGACACTCCTACTACTAACCATGTAATTTTTGGAACACTGGGTTTTGCCTGAACACCATCTCCCTGATATTGCGTAGAAATAATTGCGAGGCAGTCCATACATGCTATAGAAGATCAGGTGGTTACTGGGTAGTGTTTAAAGCTCTCTATTTAAGGGATAGCTACATCTTCGATAAGGCTCAGAAAGTTCTTGGAAAGAATTTCAATGAAAAGATGATTCAATGAGGTTTGAACAGTTTGATCTAATAAAGTCTTTCCTACTCCTGTGGAACAATTAGGTAGGTAACACGAAGCGCTTCCGAACTGATGGTGCCGAAATTGTGCTTGAAATAAATACGCCGTACTTAACAATAGAAATAATTGTGGCTGAAATGAACTAAAATTCTTTAGCTTGCTTTGAACAGAGCATCTAGGATGTGGTAAAAGTTTCCATTATTGAAGAAATCAAGGGTAAGGATTAATTTGCATTTTTAGTTGATTGGAAAAGTAAATAGTCAAATATAATCTAAAACCATGTAGTAAAGTGATATGCATGACATGGCATGACTACTACAGACAAAAGAGCATAAGTCAGTCTTCCCTTGCACAAAGATGTCTTAATGGTTGAAGAATCTGTAGTCAAAATGTTTTCTATTTGAGAAGGTAACATGTATGTACATTAAAAAGATTGCTTGTTTTCCTGGAAATTGTTAATTTTTTACTGTTGCAGTTTCTTAACCGGTATGACATATTTATTTTGCTTTAATGTTTGGACTGATTGGTTGTCTATCTTATTTCTTTTGGCTAATTTCTTGTTTGGTCTCTCAGTTCTTACATTGCTGGGCTTTCTCATCTTTGTCACTCAAAGAGTATATGCTCATACTCATTGTTACATTTTCCATCTATTTGGATTAAGTGTAGGTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGGGTATGTATTCAGTTATATAGTGCATTTCTGTAACAATAGTCTGCATAATTGTCCTGGGTTATGTCAGTAGACATCTCTGGGATTCTGTATGTCAGTAAACATAATATTGACATTATTTGCGTAATTTTTTCTTCTTTAGTCTTTTAGGATCACTATAATGGTCTTGTTGATATATACAGGGAGGAGGACCCATTACACACAGCTCCACTGATATTCTTTCAGCCAACTGTAGCTGATTAACTGAGTCAGTTTTGACTATTGTCTTCCAAATGTGCTTTACTTACCCTGCAAAGAGAGAGTAAAAGGAAAAGCTGATGCCTTGCCTCCTTCAGAGAAATGTGCTCTTAGCTTACCTAATAACAACTAGACCTATGACAACACCTTAAAAAAATGAGAATCAACAACAACATGCCTAGTGTAATCCCACCTAATGAGAAGAAAAGTTCAAGCTATCCTTCTTAAGCTTATGCTCAAGATTTCCTTGTTCATACATTAAGTCATTAACCATGCCCATATATTTTCCAAATTTCATCTGTCAAATTGGTTTGAAAAAGGGTTGGTTCAGGTTGGACTAGGAGAAGATAGAAGATGAAGATCTTTAGTATGAGGCTTTTCATGACTGTTAAGATTATTTCAGATTAAGGCGGAGCATGCATGAAGAGTCAAAAATGCTTCTTCTATTCTTTTTCCTGTGCTGCTAGGGAGTATGTATTACTGCTTTTAATTTTAATTTTAAGTGATTTCACAATCTTGGGGAATGTAGGTGTTCCTTCTTGCTGTTTTTGACATATGGAGAATGCAAGTGACATTCTATGATTAAGACTAGCACATTTGGATGAGTAGTCAACAGATACTCCTTTAGTCCCTGACTATGTGCTCAGAACCTCAGAAAAATGTTATAACACCCACATCGGATCCTCAAAAATGCATTTTCTCTGGAGGTTTGAATGCGCGTGCAGTGACATTTTTGGAGGATTCAAGCAAGATAGGTCCTTGGTCAAAAAAAGAAAAGAAAAGAAATACTCCTTAGTCCTAAATTCCCTCTTGGATCTAAAATATAAATCGTCAGTTTAAATAGAGTACTAGCAACTATTGGACCTAAAGTAATTCAGCCAACATAACTCACTAGTTTGTAATTCCTATGATGGACCTTTTGCTTCCATTGCGTTTTATTGTTCTCTAATACATGCATGGCTTGATATTCTAGATCTTTGAGAAGATTTCTTATATGTGAGTTTAGGTTAACCCTGTCCAGTTTTAGCATCTTGAATCATCATTATATGAAATGAGCTTAAATGAAGGCAGAGATCATTTAGCCGACCCCAATTCGTGGGATTGAGGATGACTTGTTGTTCTTGTTGTAGTCTATCACATGTTAGATGTTCACATACAAATTGAGATTGAGAACATATAGCTCAGTTTGTTAGTTCATTTTTGACAATGTTTTGCAGTGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAGGTAATTTTACACGATATTTGTCTTGGCTCCTTCCATATTCTGATAAGAATGTGAAATAAGATAGTAATTCCCTACAGCCTGTATGCTGTATCGCTATTATAGTATTTTCAATGAAAAAGTTTTTGTTACTCTCAAAGATAGAGCCTGTGAAGTATTGTTTTTGGTGAGTCAGGAAAATAGACATTCAGACTTTTTAGTATGAGCCTAACTCATCGGAACCGGTTCTTTTTTCTCCTTTCAAATGAGCCTCTTTCGAGAAACATCCCCTATCAGATCGCAAGGTACATCTACTTGAATAATGAGAAATGAATACAAGACTCTGAAAGCTTCATAAATTTTTTAATTTCCTCATACAACAAATTCATGATAGTACTGTAATTTTCCTGCCATATGATGAGATCCTTCTATATTCCATATGTTTGTCCGTTTGTTGTTTAGTCTTTCTCCCTTGCTGGAAGAGGGGGATTAAAGGTGTGAGAGAAAGAGCCAAAGCCTGGCATCTGTCAAGGCACCTCATATTGCCCTTCAATTGCCTTTATTGATATCATATTTCTCAGCCTAGTTCCTTCTCCCTGATGTCCTGGTCAGGTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAA</genome_strand>
        <mrna_strand>GGACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTTAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTTAAGTTAGCATACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235912" ref_strand="+" ref_description="SGN-E235912 [cLED-16-F17]">
      <seq>aaagatataaaagtcaagataccccctggagttaacaagggaagtatcctcagagttgctggtgagggtgatgcaggtcctaggggtgccccaccgggagatctttatgtctatcttgacattgaagagatacctgagatccaaagagatggcataaatctgatttcaacagtttcagtcggttatctagatgctatacttggggctgttgttaaggttaaaacagtggatggtttgactgatctccagattcctccaggcactcaacctggggatgtgcttgtcttggcaaggaaaggagcaccaaagctaaataagccatcaatacgcggtgatcacttgttcacgattaaagttagcataccaaaacgcatcagtgtgatggagcgtgaattgcttgaagaacttgcttctcttactaagggatcaagcactcgtacaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49600" stop="53815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49900" g_stop="49985" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51437" g_stop="51566" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="216" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52155" g_stop="52315" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="377" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53447" g_stop="53515" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="446" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E235912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49900" e_stop="49985"/>
          <exon e_start="51437" e_stop="51566"/>
          <exon e_start="52155" e_stop="52315"/>
          <exon e_start="53447" e_stop="53515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGGGTATGTATTCAGTTATATAGTGCATTTCTGTAACAATAGTCTGCATAATTGTCCTGGGTTATGTCAGTAGACATCTCTGGGATTCTGTATGTCAGTAAACATAATATTGACATTATTTGCGTAATTTTTTCTTCTTTAGTCTTTTAGGATCACTATAATGGTCTTGTTGATATATACAGGGAGGAGGACCCATTACACACAGCTCCACTGATATTCTTTCAGCCAACTGTAGCTGATTAACTGAGTCAGTTTTGACTATTGTCTTCCAAATGTGCTTTACTTACCCTGCAAAGAGAGAGTAAAAGGAAAAGCTGATGCCTTGCCTCCTTCAGAGAAATGTGCTCTTAGCTTACCTAATAACAACTAGACCTATGACAACACCTTAAAAAAATGAGAATCAACAACAACATGCCTAGTGTAATCCCACCTAATGAGAAGAAAAGTTCAAGCTATCCTTCTTAAGCTTATGCTCAAGATTTCCTTGTTCATACATTAAGTCATTAACCATGCCCATATATTTTCCAAATTTCATCTGTCAAATTGGTTTGAAAAAGGGTTGGTTCAGGTTGGACTAGGAGAAGATAGAAGATGAAGATCTTTAGTATGAGGCTTTTCATGACTGTTAAGATTATTTCAGATTAAGGCGGAGCATGCATGAAGAGTCAAAAATGCTTCTTCTATTCTTTTTCCTGTGCTGCTAGGGAGTATGTATTACTGCTTTTAATTTTAATTTTAAGTGATTTCACAATCTTGGGGAATGTAGGTGTTCCTTCTTGCTGTTTTTGACATATGGAGAATGCAAGTGACATTCTATGATTAAGACTAGCACATTTGGATGAGTAGTCAACAGATACTCCTTTAGTCCCTGACTATGTGCTCAGAACCTCAGAAAAATGTTATAACACCCACATCGGATCCTCAAAAATGCATTTTCTCTGGAGGTTTGAATGCGCGTGCAGTGACATTTTTGGAGGATTCAAGCAAGATAGGTCCTTGGTCAAAAAAAGAAAAGAAAAGAAATACTCCTTAGTCCTAAATTCCCTCTTGGATCTAAAATATAAATCGTCAGTTTAAATAGAGTACTAGCAACTATTGGACCTAAAGTAATTCAGCCAACATAACTCACTAGTTTGTAATTCCTATGATGGACCTTTTGCTTCCATTGCGTTTTATTGTTCTCTAATACATGCATGGCTTGATATTCTAGATCTTTGAGAAGATTTCTTATATGTGAGTTTAGGTTAACCCTGTCCAGTTTTAGCATCTTGAATCATCATTATATGAAATGAGCTTAAATGAAGGCAGAGATCATTTAGCCGACCCCAATTCGTGGGATTGAGGATGACTTGTTGTTCTTGTTGTAGTCTATCACATGTTAGATGTTCACATACAAATTGAGATTGAGAACATATAGCTCAGTTTGTTAGTTCATTTTTGACAATGTTTTGCAGTGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAGGTAATTTTACACGATATTTGTCTTGGCTCCTTCCATATTCTGATAAGAATGTGAAATAAGATAGTAATTCCCTACAGCCTGTATGCTGTATCGCTATTATAGTATTTTCAATGAAAAAGTTTTTGTTACTCTCAAAGATAGAGCCTGTGAAGTATTGTTTTTGGTGAGTCAGGAAAATAGACATTCAGACTTTTTAGTATGAGCCTAACTCATCGGAACCGGTTCTTTTTTCTCCTTTCAAATGAGCCTCTTTCGAGAAACATCCCCTATCAGATCGCAAGGTACATCTACTTGAATAATGAGAAATGAATACAAGACTCTGAAAGCTTCATAAATTTTTTAATTTCCTCATACAACAAATTCATGATAGTACTGTAATTTTCCTGCCATATGATGAGATCCTTCTATATTCCATATGTTTGTCCGTTTGTTGTTTAGTCTTTCTCCCTTGCTGGAAGAGGGGGATTAAAGGTGTGAGAGAAAGAGCCAAAGCCTGGCATCTGTCAAGGCACCTCATATTGCCCTTCAATTGCCTTTATTGATATCATATTTCTCAGCCTAGTTCCTTCTCCCTGATGTCCTGGTCAGGTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAGGTGCGCAAGTTGTAGATGATGAACTAATTATACATATCAGTTTTCTTACCTACTCGTGTCACTTTGCCTAATGATATTCCTGAAGAGTATGCCAGACACGTTTGGGAACTAATTTCCTGAATAACTATAGATATATTTTTCCTTGAATATGTCCAACAGTCCTCCTCTTTAAAAAATGGACTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTCCAGTAGTCGTATCAGGGGTGGGCATCATTCCGTTATGAATAAACCGACCAAACCAAAATTTTCTGTTTCGGTTTAGTATTTTTGGTATTCAGTTTGATTTTTGCTTCTTTTAGAAAAAAATGGTTAGCCGAAAAATTGAAATTTTTAGTAGATGTGAAAACATTTTTTTCTCACATAACTTTACCTATCTGTTTCAATCTGAAAACTACCATGCCTGACTGAATCCAACTTCAAATGAGTTTGATCACCTCCTCCATCTGTATCATGAAGGCACATGAGGAAGTGAAAATACCAGTATTTGTTTGTTGTATACTCGATATATCTCCAAGACTTAATTGAAATGCATAATATACTTGCATGGCAAAGTGCATCATGATCTGGGTGATGCGAGTGGATTATCATACTTCGGGAAAATATTTTGTTTCTTTGTTGTTATTTTTGTGAATTTCCTCAAGCAAAATCTATTTTCAATAAGAGTTAGAAACTTATTCAAATTGTATCTTAACCCCAAAGTGAATGTAGTAATTAATGTATAGAATGTGTTAAATACTCTTGCACTCCTTTGCTCATTTGCCAGCCAGCCTAGTGGTCATATGTCCTGCTTCTGAAGTCAAAAAATATAAGGAAAAGGAACCATTACTCAGGCTACTGGTGAAAAATCAATATATTTCCACTCATCAGTAAACACCATCTAATTTTTTGGTTAGTAGTATCTTCAGCATACAAATTCCTATGAGCAAACAAATCCCCCTGGTCTTCTGAAAATGATGATATAAATGCATATAGGAAATGCTTTTCACATCTAATACAGATTTGATATTGTTACACAAGAATTTAGGGCTTGTATGCAAGTGCTCTCATAATTGCTCCTGTCTATGTATGGGGACTTCATTCATGGTTCTCTATTTTGTAGTGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAAC</genome_strand>
        <mrna_strand>AAAGATATAAAAGTCAAGATACCCCCTGGAGTTAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228226" ref_strand="+" ref_description="SGN-E228226 [cLED-2-F11]">
      <seq>aaagatataaaagtcaagataccccctggagttaacaagggaagtatcctcagagttgctggtgagggtgatgcacgtcctaggggtgccccaccgggagatctttatgtctatcttgacattgaagagatacctgagatccaaagagatggcataaatctgatttcaacagtttcagtcggttatctagatgctatacttggggctgttgttaaggttaaaacagtggatggtttgactgatctccagattcctccaggcactcaacctggggatgtgcttgtcttggcaaggaaaggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49600" stop="52541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49900" g_stop="49985" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51437" g_stop="51566" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="216" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52155" g_stop="52241" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E228226" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49900" e_stop="49985"/>
          <exon e_start="51437" e_stop="51566"/>
          <exon e_start="52155" e_stop="52241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGGGTATGTATTCAGTTATATAGTGCATTTCTGTAACAATAGTCTGCATAATTGTCCTGGGTTATGTCAGTAGACATCTCTGGGATTCTGTATGTCAGTAAACATAATATTGACATTATTTGCGTAATTTTTTCTTCTTTAGTCTTTTAGGATCACTATAATGGTCTTGTTGATATATACAGGGAGGAGGACCCATTACACACAGCTCCACTGATATTCTTTCAGCCAACTGTAGCTGATTAACTGAGTCAGTTTTGACTATTGTCTTCCAAATGTGCTTTACTTACCCTGCAAAGAGAGAGTAAAAGGAAAAGCTGATGCCTTGCCTCCTTCAGAGAAATGTGCTCTTAGCTTACCTAATAACAACTAGACCTATGACAACACCTTAAAAAAATGAGAATCAACAACAACATGCCTAGTGTAATCCCACCTAATGAGAAGAAAAGTTCAAGCTATCCTTCTTAAGCTTATGCTCAAGATTTCCTTGTTCATACATTAAGTCATTAACCATGCCCATATATTTTCCAAATTTCATCTGTCAAATTGGTTTGAAAAAGGGTTGGTTCAGGTTGGACTAGGAGAAGATAGAAGATGAAGATCTTTAGTATGAGGCTTTTCATGACTGTTAAGATTATTTCAGATTAAGGCGGAGCATGCATGAAGAGTCAAAAATGCTTCTTCTATTCTTTTTCCTGTGCTGCTAGGGAGTATGTATTACTGCTTTTAATTTTAATTTTAAGTGATTTCACAATCTTGGGGAATGTAGGTGTTCCTTCTTGCTGTTTTTGACATATGGAGAATGCAAGTGACATTCTATGATTAAGACTAGCACATTTGGATGAGTAGTCAACAGATACTCCTTTAGTCCCTGACTATGTGCTCAGAACCTCAGAAAAATGTTATAACACCCACATCGGATCCTCAAAAATGCATTTTCTCTGGAGGTTTGAATGCGCGTGCAGTGACATTTTTGGAGGATTCAAGCAAGATAGGTCCTTGGTCAAAAAAAGAAAAGAAAAGAAATACTCCTTAGTCCTAAATTCCCTCTTGGATCTAAAATATAAATCGTCAGTTTAAATAGAGTACTAGCAACTATTGGACCTAAAGTAATTCAGCCAACATAACTCACTAGTTTGTAATTCCTATGATGGACCTTTTGCTTCCATTGCGTTTTATTGTTCTCTAATACATGCATGGCTTGATATTCTAGATCTTTGAGAAGATTTCTTATATGTGAGTTTAGGTTAACCCTGTCCAGTTTTAGCATCTTGAATCATCATTATATGAAATGAGCTTAAATGAAGGCAGAGATCATTTAGCCGACCCCAATTCGTGGGATTGAGGATGACTTGTTGTTCTTGTTGTAGTCTATCACATGTTAGATGTTCACATACAAATTGAGATTGAGAACATATAGCTCAGTTTGTTAGTTCATTTTTGACAATGTTTTGCAGTGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAGGTAATTTTACACGATATTTGTCTTGGCTCCTTCCATATTCTGATAAGAATGTGAAATAAGATAGTAATTCCCTACAGCCTGTATGCTGTATCGCTATTATAGTATTTTCAATGAAAAAGTTTTTGTTACTCTCAAAGATAGAGCCTGTGAAGTATTGTTTTTGGTGAGTCAGGAAAATAGACATTCAGACTTTTTAGTATGAGCCTAACTCATCGGAACCGGTTCTTTTTTCTCCTTTCAAATGAGCCTCTTTCGAGAAACATCCCCTATCAGATCGCAAGGTACATCTACTTGAATAATGAGAAATGAATACAAGACTCTGAAAGCTTCATAAATTTTTTAATTTCCTCATACAACAAATTCATGATAGTACTGTAATTTTCCTGCCATATGATGAGATCCTTCTATATTCCATATGTTTGTCCGTTTGTTGTTTAGTCTTTCTCCCTTGCTGGAAGAGGGGGATTAAAGGTGTGAGAGAAAGAGCCAAAGCCTGGCATCTGTCAAGGCACCTCATATTGCCCTTCAATTGCCTTTATTGATATCATATTTCTCAGCCTAGTTCCTTCTCCCTGATGTCCTGGTCAGGTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCA</genome_strand>
        <mrna_strand>AAAGATATAAAAGTCAAGATACCCCCTGGAGTTAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCACGTCCTAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734003" ref_strand="+" ref_description="SGN-E734003 [LB11CB03]">
      <seq>gtttgactgatctccagattcctccaggcactcaacctggggatgtgcttgtcttggcaaggaaaggagcaccaaagctaaataagccatcaatacgcggtgatcacttgttcacgattaaagttagcataccaaaacgcatcagtgtgatggagcgtgaattgcttgaagaacttgcttctcttactaagggatcaagcactcgtacaaaaactcgcccggcggttcagcaaacggcaaaagttactgaaactccagtaggttcagattcaagtgcagcaaaaactgatgagtcatcatcagaagatcgagacgatccattgaagaagttagcaaattttgctgggtctgtcgtaaatggtgcactgaaatggttaagagacaacctgtagtacttggtgctgggatactgcctcagcaatcttcttttatacgacaatggcattgaattttatgtgcttcaaaacagccattattgcatcttgcggcctttcatttcttagaataactttttggtgattctgcctgtaaaattgaatccagccaccttattcttttaggaaacctaatccttcgcctttgtaaattctgacaaatatattctccacctcaaagaagttggtgagatggattctaacagctatttttgtataagaaattttgtatgtcagcaagcatttaacagaaacccagaaatatcccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51871" stop="55842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52171" g_stop="52315" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53447" g_stop="53538" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="237" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53539" i_stop="54700" i_length="1162">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54701" g_stop="54809" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="346" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54810" i_stop="55182" i_length="373">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55183" g_stop="55549" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="713" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E734003" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52171" e_stop="52315"/>
          <exon e_start="53447" e_stop="53538"/>
          <exon e_start="54701" e_stop="54809"/>
          <exon e_start="55183" e_stop="55549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAGGTGCGCAAGTTGTAGATGATGAACTAATTATACATATCAGTTTTCTTACCTACTCGTGTCACTTTGCCTAATGATATTCCTGAAGAGTATGCCAGACACGTTTGGGAACTAATTTCCTGAATAACTATAGATATATTTTTCCTTGAATATGTCCAACAGTCCTCCTCTTTAAAAAATGGACTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTCCAGTAGTCGTATCAGGGGTGGGCATCATTCCGTTATGAATAAACCGACCAAACCAAAATTTTCTGTTTCGGTTTAGTATTTTTGGTATTCAGTTTGATTTTTGCTTCTTTTAGAAAAAAATGGTTAGCCGAAAAATTGAAATTTTTAGTAGATGTGAAAACATTTTTTTCTCACATAACTTTACCTATCTGTTTCAATCTGAAAACTACCATGCCTGACTGAATCCAACTTCAAATGAGTTTGATCACCTCCTCCATCTGTATCATGAAGGCACATGAGGAAGTGAAAATACCAGTATTTGTTTGTTGTATACTCGATATATCTCCAAGACTTAATTGAAATGCATAATATACTTGCATGGCAAAGTGCATCATGATCTGGGTGATGCGAGTGGATTATCATACTTCGGGAAAATATTTTGTTTCTTTGTTGTTATTTTTGTGAATTTCCTCAAGCAAAATCTATTTTCAATAAGAGTTAGAAACTTATTCAAATTGTATCTTAACCCCAAAGTGAATGTAGTAATTAATGTATAGAATGTGTTAAATACTCTTGCACTCCTTTGCTCATTTGCCAGCCAGCCTAGTGGTCATATGTCCTGCTTCTGAAGTCAAAAAATATAAGGAAAAGGAACCATTACTCAGGCTACTGGTGAAAAATCAATATATTTCCACTCATCAGTAAACACCATCTAATTTTTTGGTTAGTAGTATCTTCAGCATACAAATTCCTATGAGCAAACAAATCCCCCTGGTCTTCTGAAAATGATGATATAAATGCATATAGGAAATGCTTTTCACATCTAATACAGATTTGATATTGTTACACAAGAATTTAGGGCTTGTATGCAAGTGCTCTCATAATTGCTCCTGTCTATGTATGGGGACTTCATTCATGGTTCTCTATTTTGTAGTGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGGGTATGATCACTTCTCGATTCATCATTTTCTCAATTCTCTATACGTGAATGACAGAGTTAATGACACTGGGTTGTGACATTAGTTAAACATGATGAGTTCCAGAGAATAGAAGGTAATGATCTGTCACTTGTGTGGCTGATTGTAATGGATATATCCTTCCTAATATTTACTTACTGTAAATGAATATATCATTCCAAATAAATGCTGCTCCTCTGGTCCAAAATGAAAGAATTTTTCAAAGTCAAAAGATGTATTAATTAATTTTTTCCAAAATGACCTTTCTCTTAAATGTTTTTTTCCCCAACTATCTCTAGTTTTAAGAAAAGTTCAGGAAGAAACAAAGGGTAATATTGACAAATTGCCATTTAATTTACTGACTTTCTTAAGGGGTGTGCCACACCCCAAAAATTCATTTATGTTGGAATGGAGGGAGTACATCTTATCTTGTTTGGAACTAGACCTGGGGTCATCAGCACTGAAATAGATGCTATTGATTATCAATAAAAAATAAAATGAAGATGAACCATTTGCGAGTTAAGTGATAGGTTTTGGCTACTGTATTTGGATAGTTACTTAAAAAACCCTAGATCAACCACTAAGTTTGACTTGGAAATTTGTGTGATGCGCATCAAGTAGTTAAAACTGATACAAAATACGGGAGAACAAAGAGGAATATATTGTTGCTCGTGAATTGAGAAATGAAGTTATTGATTCTAACCCATACTATATAAAAGCTCTGTTATTTTTCTCAACCTAGAATATCCCAGAAGAGAACATCCTACTAAAGTTGGAAATATTTTCAATGCAGTTTAGATAGAGCATGCAGCTCAGATAATCAGAGCACGTGATTAGAAAATACAGTCAAGTCCTAGGAGTACCTTATACAGTTGACCCAAAAAGGATATATTTTTTTGATGAATGTCCCAAAAAGGAAATACTTATCACTATGAGGATAGGAAAATTATTCTCTGAATTCACTCACAGTATCAAAAGTAAGAATTTCTCCTCACTCAAAAATAGGAACACATGTTGCTCCGAGTGTAGGAAACTTATGATCAGGTTAAGGCAAAATTCATGGTACTTGGATGTTGATAGAGTATCTCATTTACAGTCAGTACAATCCTTTGGCATAAAATTTTACCATCTTTTTTCTGCTTCGCAGCAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGGGTAAATTTCTTGATCATTATTCGTTAATTAGGAATTCTGTTGGAAAGTACTTAGTTCTTGGTAATTTAGTCTTGATTTGGGAGACGCTTATGTTGTTAGAACCACCGAACCACACAAGTCACCTATTTTTGGGGTCTAAAAACATGGTAGATCTTTTTAAGTGGTTTTGCTGTATGAATTCAGCAACCTTGCCAGAAAATAGACCCACATTCACAAAGCCGTGGTAGAATGACCCTTTACATTGGACTTCAGATTACCCATAAATCTTGCATCATTTATAGTGCCATATTTCTGCAATAGTTAATCTTAACCATGTTTAGTTTTATTCTGTTGCAAGTGTTTCTTCCTTCTAATTAAAGGTTTGTGATTGCAGGTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCCAACATTGGTAG</genome_strand>
        <mrna_strand>GTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344803" ref_strand="+" ref_description="SGN-E344803 [cTOF-21-N2]">
      <seq>tgtgcttgtcttggcaaggaaaggagcaccaaagctaaataagccatcaatacgcggtgatcacttgttcacgattaaagttagcataccaaaacgcatcagtgtgatggagcgtgaattgcttgaagaacttgcttctcttactaagggatcaagcactcgtacaaaaactcgcccggcggttcagcaaacggcaaaagttactgaaactccagtaggttcagattcaagtgcagcaaaaactgatgagtcatcatcagaagatcgagacgatccattgaagaagttagcaaattttgctgggtctgtcgtaaatggtgcactgaaatggttaagagacaacctgtagtacttggtgctgggatactgcctcagcaatcttcttttatacgacaatggcattgaattttatgtgcttcaaaacagccattattgcatcttgcggcctttcatttcttagaataactttttggtgattctgcctgtaaaattgaatccagccaccttattcttttaggaaacctaatccttcgcctttgtaaattctgacaaatatattctccacctcaaagaagttggtgagatggattctaacagctatttttgtataagaaattttgtatgtcagcaagcatttaacagaaacccagaaatatcccannnnaaaaaaaaaaaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51914" stop="55839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52214" g_stop="52315" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53447" g_stop="53538" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53539" i_stop="54700" i_length="1162">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54701" g_stop="54809" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54810" i_stop="55182" i_length="373">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55183" g_stop="55545" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="666" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="677"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E344803" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52214" e_stop="52315"/>
          <exon e_start="53447" e_stop="53538"/>
          <exon e_start="54701" e_stop="54809"/>
          <exon e_start="55183" e_stop="55545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAGGTGCGCAAGTTGTAGATGATGAACTAATTATACATATCAGTTTTCTTACCTACTCGTGTCACTTTGCCTAATGATATTCCTGAAGAGTATGCCAGACACGTTTGGGAACTAATTTCCTGAATAACTATAGATATATTTTTCCTTGAATATGTCCAACAGTCCTCCTCTTTAAAAAATGGACTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTCCAGTAGTCGTATCAGGGGTGGGCATCATTCCGTTATGAATAAACCGACCAAACCAAAATTTTCTGTTTCGGTTTAGTATTTTTGGTATTCAGTTTGATTTTTGCTTCTTTTAGAAAAAAATGGTTAGCCGAAAAATTGAAATTTTTAGTAGATGTGAAAACATTTTTTTCTCACATAACTTTACCTATCTGTTTCAATCTGAAAACTACCATGCCTGACTGAATCCAACTTCAAATGAGTTTGATCACCTCCTCCATCTGTATCATGAAGGCACATGAGGAAGTGAAAATACCAGTATTTGTTTGTTGTATACTCGATATATCTCCAAGACTTAATTGAAATGCATAATATACTTGCATGGCAAAGTGCATCATGATCTGGGTGATGCGAGTGGATTATCATACTTCGGGAAAATATTTTGTTTCTTTGTTGTTATTTTTGTGAATTTCCTCAAGCAAAATCTATTTTCAATAAGAGTTAGAAACTTATTCAAATTGTATCTTAACCCCAAAGTGAATGTAGTAATTAATGTATAGAATGTGTTAAATACTCTTGCACTCCTTTGCTCATTTGCCAGCCAGCCTAGTGGTCATATGTCCTGCTTCTGAAGTCAAAAAATATAAGGAAAAGGAACCATTACTCAGGCTACTGGTGAAAAATCAATATATTTCCACTCATCAGTAAACACCATCTAATTTTTTGGTTAGTAGTATCTTCAGCATACAAATTCCTATGAGCAAACAAATCCCCCTGGTCTTCTGAAAATGATGATATAAATGCATATAGGAAATGCTTTTCACATCTAATACAGATTTGATATTGTTACACAAGAATTTAGGGCTTGTATGCAAGTGCTCTCATAATTGCTCCTGTCTATGTATGGGGACTTCATTCATGGTTCTCTATTTTGTAGTGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGGGTATGATCACTTCTCGATTCATCATTTTCTCAATTCTCTATACGTGAATGACAGAGTTAATGACACTGGGTTGTGACATTAGTTAAACATGATGAGTTCCAGAGAATAGAAGGTAATGATCTGTCACTTGTGTGGCTGATTGTAATGGATATATCCTTCCTAATATTTACTTACTGTAAATGAATATATCATTCCAAATAAATGCTGCTCCTCTGGTCCAAAATGAAAGAATTTTTCAAAGTCAAAAGATGTATTAATTAATTTTTTCCAAAATGACCTTTCTCTTAAATGTTTTTTTCCCCAACTATCTCTAGTTTTAAGAAAAGTTCAGGAAGAAACAAAGGGTAATATTGACAAATTGCCATTTAATTTACTGACTTTCTTAAGGGGTGTGCCACACCCCAAAAATTCATTTATGTTGGAATGGAGGGAGTACATCTTATCTTGTTTGGAACTAGACCTGGGGTCATCAGCACTGAAATAGATGCTATTGATTATCAATAAAAAATAAAATGAAGATGAACCATTTGCGAGTTAAGTGATAGGTTTTGGCTACTGTATTTGGATAGTTACTTAAAAAACCCTAGATCAACCACTAAGTTTGACTTGGAAATTTGTGTGATGCGCATCAAGTAGTTAAAACTGATACAAAATACGGGAGAACAAAGAGGAATATATTGTTGCTCGTGAATTGAGAAATGAAGTTATTGATTCTAACCCATACTATATAAAAGCTCTGTTATTTTTCTCAACCTAGAATATCCCAGAAGAGAACATCCTACTAAAGTTGGAAATATTTTCAATGCAGTTTAGATAGAGCATGCAGCTCAGATAATCAGAGCACGTGATTAGAAAATACAGTCAAGTCCTAGGAGTACCTTATACAGTTGACCCAAAAAGGATATATTTTTTTGATGAATGTCCCAAAAAGGAAATACTTATCACTATGAGGATAGGAAAATTATTCTCTGAATTCACTCACAGTATCAAAAGTAAGAATTTCTCCTCACTCAAAAATAGGAACACATGTTGCTCCGAGTGTAGGAAACTTATGATCAGGTTAAGGCAAAATTCATGGTACTTGGATGTTGATAGAGTATCTCATTTACAGTCAGTACAATCCTTTGGCATAAAATTTTACCATCTTTTTTCTGCTTCGCAGCAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGGGTAAATTTCTTGATCATTATTCGTTAATTAGGAATTCTGTTGGAAAGTACTTAGTTCTTGGTAATTTAGTCTTGATTTGGGAGACGCTTATGTTGTTAGAACCACCGAACCACACAAGTCACCTATTTTTGGGGTCTAAAAACATGGTAGATCTTTTTAAGTGGTTTTGCTGTATGAATTCAGCAACCTTGCCAGAAAATAGACCCACATTCACAAAGCCGTGGTAGAATGACCCTTTACATTGGACTTCAGATTACCCATAAATCTTGCATCATTTATAGTGCCATATTTCTGCAATAGTTAATCTTAACCATGTTTAGTTTTATTCTGTTGCAAGTGTTTCTTCCTTCTAATTAAAGGTTTGTGATTGCAGGTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCCAACATTG</genome_strand>
        <mrna_strand>TGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCCANNNNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281077" ref_strand="-" ref_description="SGN-E281077 [cLER-7-I11]">
      <seq>attttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatatatataagatccaagtacaatctaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56467" stop="55522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56167" g_stop="55823" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="367"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E281077" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56167" e_stop="55823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</genome_strand>
        <mrna_strand>ATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734020" ref_strand="+" ref_description="SGN-E734020 [LB11CC08]">
      <seq>gctatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56761" stop="55537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56461" g_stop="56246" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55834" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="560" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E734020" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56461" e_stop="56246"/>
          <exon e_start="56177" e_stop="55834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCC</genome_strand>
        <mrna_strand>GCTATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267713" ref_strand="+" ref_description="SGN-E267713 [cLEI-12-K24]">
      <seq>gcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56761" stop="55537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56461" g_stop="56246" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55834" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="560" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E267713" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56461" e_stop="56246"/>
          <exon e_start="56177" e_stop="55834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCC</genome_strand>
        <mrna_strand>GCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375377" ref_strand="+" ref_description="SGN-E375377 [TUS-15-D18]">
      <seq>tttcttctgagaacatggaagctaccgcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56787" stop="55537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56487" g_stop="56246" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55836" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="584" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E375377" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56487" e_stop="56246"/>
          <exon e_start="56177" e_stop="55836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGAT</genome_strand>
        <mrna_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344555" ref_strand="+" ref_description="SGN-E344555 [cTOF-14-C21]">
      <seq>gaagctaccgcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56770" stop="55537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56470" g_stop="56246" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55837" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="566" r_length="341" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E344555" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56470" e_stop="56246"/>
          <exon e_start="56177" e_stop="55837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGA</genome_strand>
        <mrna_strand>GAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375376" ref_strand="+" ref_description="SGN-E375376 [TUS-15-D18](-)">
      <seq>tttcttctgagaacatggaagctaccgcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttccgaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctgtttatgataacagctccgatgattgttgcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcaaatttgtaccagatgatttttatacattctttcctggattttgtagctcctgtgtcacaattaaatatttacacatgtttaataaaaccttaaattacatataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56787" stop="55539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56487" g_stop="56246" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55838" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="582" r_length="340" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E375376" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56487" e_stop="56246"/>
          <exon e_start="56177" e_stop="55838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAG</genome_strand>
        <mrna_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204371" ref_strand="+" ref_description="SGN-E204371 [cLEC-13-B23]">
      <seq>tttcttctgagaacatggaagctaccgcaatgcgaccaaacgctgccaagcttctggtgaactgctcaacgccggtgtcatttcttcagccgccgtctgctgccggagttgtcttcctcgttccaaaatatgttcgattgacttcctcatttaagacgttcatgattgcccgagcttcccaccctaaaactgaccaagcaagtccgagcactgatgaacctggccttcctttcctaccgcaggaggattcgaattttttggtgaaactgggagtaggttcagtggcgggaggagcagcgataaagtacggaagtgtaattttctcagagataacaacaccaaacatttcattagctctggttatgataacagctcccatgattgtagcggtggtgctattattcttacaaagccgtacagattcaacttctgcgtgaacaaagctcttcttcttctgtactaaggacatctcacatttgtaccacatgatttttatacattctttcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56787" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56487" g_stop="56246" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56177" g_stop="55910" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="510" r_length="268" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E204371" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56487" e_stop="56246"/>
          <exon e_start="56177" e_stop="55910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGG</genome_strand>
        <mrna_strand>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCCACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG....................................................................GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGGTTATGATAACAGCTCCCATGATTGTAGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCACATTTGTACCACATGATTTTTATACATTCTTTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729223" ref_strand="+" ref_description="SGN-E729223 [LA20BE05]">
      <seq>atcgattggcattcacaaacattgaagttccttcataatcctgttgatttcgttaatcgatctccgtcaagatggtgttagcacaattaggggggagcatctcgcgtgctctccagcagatgagcaatgccacaatcatcgatgaaaaggtcctcaacgagtgcctcaatgagatcacccgtgctcttctacaggccgatgttcaatttaagctagttcgtgatatgtcaacaaatatcaagaagattgtcaatcttgaagatcttgccgctggacacaacaagcgtaggattattcaacaggctgtgtataatgagctctgcaagatattggatcctgggaaacctgcatttacacttaaaaaagggaaacctagtgttgtaatgtttgtaggtttgcaagggtctggaaaaactacaacgtgtacaaaatatgcttaccaccaccatagaaggggttggaagccggctctagtctgtgcacataccttcagagctggtgctttcaatcaattgaagcataatgctacaaaagctaagattcctttttatggaagctatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56836" stop="58759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57136" g_stop="57437" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57438" i_stop="58024" i_length="587">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58025" g_stop="58124" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="402" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58125" i_stop="58297" i_length="173">
            <donor d_prob="0.542" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58298" g_stop="58451" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="556" r_length="154" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E729223" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57136" e_stop="57437"/>
          <exon e_start="58025" e_stop="58124"/>
          <exon e_start="58298" e_stop="58451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAGGTTTGTATTCTTTTCGCCGGAAATTTTACCTCGTTATGTTGATATGCATGTAAAGATTATCTTAGATGAACTGTTGAGAATTTGATATACACAGAGTAATGCCTAAAAGAGGCTGAAAGATTTTCAGGGACATATTTGTAGGCGTCTATATCAATTTCTTTGCAGGTTGGAGGGGAACTGTTCCCTTTTTCTTTCAGTATCTAGTAATTTAGATAAACAATGGAGACATCTTTTTACCGCTCAATACGTCTCTTAAGTGGTGAGACTGGTACACAAGCCTCCTCCAATGTTGTTAGCTTACGGAGCTGGGAAGGCATCAAAAGCTCCAATTTTGTTAGCTTATGGTGCTGGAAAGGCATCAAACAAGAAAGGAACACTAGTACTTAATTAAAAAAACCAAGAAAAGAAAGCAACTGAAATTATAGGCCATCTATCATGATATCTCTTCACTTGTTTCTTCCTTCTGGTTTTCTTTTGTGTCCAGTTTGGGTTTCATTGTTTTTTTCTATTTTCTTCATCATTTTATACTTATGTTTTCCGCACTATCTTCTTGTATTGACTTGAGATAGTTTCTTTCATTTGTGTAGGCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAGGTGTGTTAATTTATTTTTCTACCTTAGGGTATGTTCTGTAACAAGTTTATATGTGAGCTAGCATTAACTATCTGAGCAGTAAGCATTATTTGGCGCAATTATTATAATGCACACCAAGAGCTTTTCCTCTTCAATTACTAGATGGTATCCTTATGTCTTGTAATTTCACACAGGGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAG</genome_strand>
        <mrna_strand>ATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTAGGTTTGCAAG.............................................................................................................................................................................GGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCATAGAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCACATACCTTCAGAGCTGGTGCTTTCAATCAATTGAAGCATAATGCTACAAAAGCTAAGATTCCTTTTTATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702467" ref_strand="+" ref_description="SGN-E702467 [FA18DB12]">
      <seq>gtgggcgccacaaacaagaagcagctctttttgaagaaatgcgacaagtttctgaagcaacgaaaccggatctcgtgatttttgttatggatagtagtattggacaagctgcttttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="58894" stop="64569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59194" g_stop="59255" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59319" g_stop="59467" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="211" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="312" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="470" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="585" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64018" g_stop="64269" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="837" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E702467" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59194" e_stop="59255"/>
          <exon e_start="59319" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACGGTATGTTCTACTGTGATCTATATTTTCCCTTTAATTAGATCCTCATCTTATTGTTTTCCGCAGAAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGG</genome_strand>
        <mrna_strand>GTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACG...............................................................AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551575" ref_strand="+" ref_description="SGN-E551575 [cTSB-1-C4]">
      <seq>cacaaacaagaagcagctctttttgaagaaatgcgacaagtttctgaagcaacgaaaccggatctcgtgatttttgttatggatagtagtattggacaagctgcttttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="58902" stop="64526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59202" g_stop="59255" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59319" g_stop="59467" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="203" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="304" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="462" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="577" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64018" g_stop="64226" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="786" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E551575" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59202" e_stop="59255"/>
          <exon e_start="59319" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACGGTATGTTCTACTGTGATCTATATTTTCCCTTTAATTAGATCCTCATCTTATTGTTTTCCGCAGAAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGC</genome_strand>
        <mrna_strand>CACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACG...............................................................AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703224" ref_strand="+" ref_description="SGN-E703224 [FA20DF07]">
      <seq>gtttctgaagcaacgaaaccggatctcgtgatttttgttatggatagtagtattggacaagctgcttttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgggtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59015" stop="64575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59241" g_stop="59255" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59319" g_stop="59467" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="164" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="265" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="423" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="538" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64018" g_stop="64275" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="796" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E703224" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59241" e_stop="59255"/>
          <exon e_start="59319" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTGAAGCAACGGTATGTTCTACTGTGATCTATATTTTCCCTTTAATTAGATCCTCATCTTATTGTTTTCCGCAGAAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTT</genome_strand>
        <mrna_strand>GTTTCTGAAGCAACG...............................................................AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697997" ref_strand="+" ref_description="SGN-E697997 [FA04DG07]">
      <seq>cgctgcttttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgggtggtttgcagaacttaatgaagcaaatgggttccgcccaggacattatgggtatgttttggtggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59064" stop="64640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59363" g_stop="59467" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="206" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="364" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="479" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64018" g_stop="64340" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="803" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E697997" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59363" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCAAGGACATGATGGGTATG-TTTGGTGGTGGTGGT</genome_strand>
        <mrna_strand>CGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCCAGGACATTATGGGTATGTTTTGGTGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372594" ref_strand="+" ref_description="SGN-E372594 [TUS-31-I19]">
      <seq>tttgatcaagctcaagcatttcgacaaagtgttgcggttggagccgtgattgttactaagatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaactaaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacanaacatgagcaaagtcctcccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59070" stop="64540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59370" g_stop="59467" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="199" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="357" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="472" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64018" g_stop="64240" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="695" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E372594" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59370" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCC</genome_strand>
        <mrna_strand>TTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACANAACATGAGCAAAGTCCTCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290637" ref_strand="+" ref_description="SGN-E290637 [cLES-20-P10]">
      <seq>tttgatcaagctcaagcatttccacaaagtgttgcggttggagccgagattgttactaaaatggatggccatgcaaaaggaggtggtgccctaagtgcagttgctgcaacataaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaagcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttgtttagaagttatcagaaggacattttaccttgaggatcatgtactagcaatttcatagcatgcttaaaatgggtccccttggacaggatttttcaatgcttcctggatttagtgcagagatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59070" stop="64141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59370" g_stop="59467" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60212" g_stop="60312" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="200" r_length="102" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="358" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63802" g_stop="63841" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="398" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E290637" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59370" e_stop="59467"/>
          <exon e_start="60212" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGCGTAAGTTTTTAATCGTTTGGCTGTAGCCTTAAAGAAACTTCTTAAAGTTTCCGGTACTCTTAATTAACTACAAAGCATATGTTTAAGTTCATGGTATCAGCTTTTAACATTTGAAATTCTAGCCTTGGTAGCTCAAAGCTGCTGGCTGCTGCTGTTATTTCTTTTTTCTTGTTTTTGGTGATACAACCTGTTAGTCTGCTTTTTCTGGCTAAGAGAAATGCTTGTTGGTTACCTATTTCTGTCGCATAGCAAACCATTAAGATATTCCTGCAGAAAATGTTTATTCTTTATCCAACGAGATTTAGAAATTGATGCTGAACAGTTTATGCAAAAGTAGAATGGTAAAACTTGGAACTACTGTCTTTTGGCTCCAAAAAGCTCAAAACATACTGCCTCTATTGTAGATATATCCGTCTTTTGTTTACAAGGATTTTTCATATTGGTGGTGTTCACCCCAACTTGTGGTCTTTTGCGGGCACATGTTGTCAAGGTAGTCTTGCTTGCAAAGGCTGGAGAAAATTAGCTCCATTGCGTGTATTAACTGGGATGAAGATTTGGGATCTCCAGGTTGTTAATCTATCACAGCCACTAGGACATTCCCTTGGGGACTTCACAAGGATTTTGTTATTGATTTTACAAATTATAAGTTGGATCAAGTTTTGTCTGAATATTCTGCTGAATATTTATTGTCCGTTTCTTTGGATTAAAAAAGATTTATTTGTTCTTTTGCTCTTCCATCTGCAGAGTTGCTGCAAC-TAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGC</genome_strand>
        <mrna_strand>TTTGATCAAGCTCAAGCATTTCCACAAAGTGTTGCGGTTGGAGCCGAGATTGTTACTAAAATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGCAACATAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAA..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTGTTTAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACTAGCAATTTCATAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295139" ref_strand="+" ref_description="SGN-E295139 [cLET-20-M2]">
      <seq>taaaagtccagtcatatttattggaactggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcacagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgggtggtttgcagaacttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59924" stop="64589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60224" g_stop="60312" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="247" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="362" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64018" g_stop="64289" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="634" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E295139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60224" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATG</genome_strand>
        <mrna_strand>TAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCACAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310460" ref_strand="+" ref_description="SGN-E310460 [cTOA-9-I15]">
      <seq>tggtgaacacatggacgagtttgaagtttttgatgttaaaccatttgtcagccgtcttttaggcatgggtgacttgtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcacaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcacagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcacatcggtggaatgggtggtttgcagaacttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59951" stop="64590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60251" g_stop="60312" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60411" g_stop="60568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="220" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="335" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64018" g_stop="64290" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="608" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E310460" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60251" e_stop="60312"/>
          <exon e_start="60411" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAGGTTTGCATCCTTCTGTTGAATACTTGATATTGCAACTTTGCTTGGACCTATGTTCCTATTCCACTGCCATTGATTTTGTTCTGCTGAACTATCTCTAGGCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGA</genome_strand>
        <mrna_strand>TGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG..................................................................................................GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCACAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCACAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCACATCGGTGGAATGGGTGGTTTGCAGAACTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733065" ref_strand="+" ref_description="SGN-E733065 [LB03DE08]">
      <seq>gtctggattggtgaacaagatacaagatgtggtcccaatggatcaacagcctgagcttcttcagaagttatcagaaggacattttaccttgaggatcatgtacgagcaatttcagagcatgcttaaaatgggtccccttggacaggttttttcaatgcttcctggatttagtgcagagatgatgccacaaggtcgtgaaaaggaaagtcaagcaaagtttaaaaggtatatgacaatgatggactccatgactgatgaagaattggacagtaccaatccaaagattttgactgaatctcggatcatgcgtatagctaggggatctggccgcctcgtgcatgaggtgatggagatgttggaagaatacaaacgacttgccaaaatattcagcaagatgaagggtcttaagattccaaagaagggagatatgagctccctgtcgagaaacatgaatgcacaaaacatgagcaaagtcctcccccctcagatgttgaagcagatcggtggaatgggtggtttgcagaacttaatgaagcaaatgggttccgccaaggacatgatgggtatgtttggtggtggtggtggagagtaataatggaatcacaattgaactacagtttacgtcgtcaattcatagttggtggaaatagcatgtaaccaaatctctgtcactccctatctttcaaattttgaatctgatgcatttggtaaatttatttgattcagaatgaaacactgtatggttttgatgctccacttcatgctatgcttgtatgacatgatctcttcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60124" stop="64849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60424" g_stop="60568" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63802" g_stop="63916" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="260" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64018" g_stop="64550" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="793" r_length="533" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="806"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E733065" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60424" e_stop="60568"/>
          <exon e_start="63802" e_stop="63916"/>
          <exon e_start="64018" e_stop="64550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAGGTTTGCCACTCACTTAAATTCATCTGATCATCCTTCATCCCTTCTCTCTCGCTTTCTCCCACTCCTTTTGGAATTTGGCAGACTTCTTCTGAATGTTGTATCATTGATAATTTATTTTTTGGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAATTTACAAGGAACCTAAAACATCTTCAATTGATTCTAGATCTACCATGTTCTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCCCTTGTTTTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGACCACTAAATGCAAGCTGAAATAATTTTCCATCTTTCTTTATGCCTGGAAATGCTTGCATAACTGCTTCATAACTTCAGGGTTTGCGTAACTTTCCTAGGCATAACCCATTCCACAAAATGTTGGTTATTCTATAGTACAGGAAGAGATGGTTGACAGTCTCTACTTCTTCTTCACCACATAGAAGGCAATTATGACTCAGTTGAATATTTCTTTTCATGAGATTTTCCTGGGTCAAAACTGCCTGCTTAGCAAGGAGCCAAGTAAAACAAGACACCTTGTAGGGGTTTTTAGTTTTCTATATCAACTTCCATGGCCATCCATTCCCTTGACTGTTACAAGGATTAAATTTTTTATACGCTCTTCTAACACTGAAATTGTCCCGGTTGTGATCCTGTCATACCATACTATCTTGTGCATCAATAGTTCCTTTGAACTGCCCTAAAACCTTGTAAAACTCCACCAACCTTTGGATCTCCCAGTCATTTAGAGGTCTTCTAAAGCTCAGATTCCACCCTTGGTTTGACCACATCTCTGCTACAGTGGCTCTTTGCTGCTGGTTTAAGGTGAAAATATCCGGGAACAAGGTTTTTAAAGATCCTTGCTCTATCCATCTATCTTCCCAAAAAGAAGTTTTCCTTCCATTTCCCAATTTAATACTGCAGTTTTCTCTGAGCTTTGGCCAGTGGTTTCTGATGGCTCTCCAATGGCTTGATCCATAAGTGCTAGTGACCGTCTTAGTTATCCAGAGATCCTCCATTTCATATGTAGCCTGTATTACGTCTTTCCACAGAGCTTGCTCACTGGAAGCAAATCTCCATAGCCACTTCATCATAAGCCACTGGTTTTGAATTTTAAATTCGGTATCCCCATCCCCCCCTGCCTGTTTACTCTTAATCAGAGTATCCCACTTGACCAAGTGAATTTCTTGGTTTCACTATTTCCTTTCCACAGGAAATTCCTCCTCAAAGCATTAAGTCTGTCAATAACACCATCAGGAATAGGGAAAAGTGACATCATATATGCAGGCATAGAATCTAAAACACTATTGATGAGTGTAAATCTTCCTCCTAAAGAAAGGTACTGGCTCTTCCAATTCACCAACCTTTTTTCACATTTTCAATCACCCCATTTCAAATGCCTATAGATTTGCTTTTGGCTCCCAACGGCATTCCCAAATATGTAGTTGGTAGAACTCCCGTCCTTCCGCCCAAAATCCTAGCCAGAGAGTGTAAATCAGGAACTTCATTTACTGGATACAAGAAACTCTTGTTCCAATTGATGTGAAGCCCAGAGTCAGATCAGGTTTTTCTAGTTTCTAAAATTTTGTTTTCAGCCGCCATTTTCTTCATCAAGGTCCCACATTTCTTGATTTTTTTTTTTACTTTACCGCTTTTTGAACTTTATGAGAGAACATTCGGGTCCCTCCTTTCCCAACTGCTGCTCCTCAAACCCCCCCTGCTTTTTTCTCTTTTGGTTTCTTTCTTTCTTCCTTTTCTTTTTCTTCTTTTGCCTTTAACCATTTCAAAAGAAAATCTAGTTGCATGTACAAATGTTTTTTGCTGTTTCTGAAATCTGTAACCATATGAAATAAGTTACTATTGTTAGGGATTCAGTGATATGTTTTCGCAAGTTCAAATCTGATAAAACTTCTTTTTTCCAATACTAAATCAAAACACAGTTGTTTCCGAAAGCTCAATTAAAATATGTTTTTTTTTTCAAAACAAATTCCCAACCAAATCAAAAGAAGAATTTTGGTTTGGAGAATTTTCATCATTTGTTTAATTCTTTCGAAAAGAAGTAGCTTTCATATAGTATATCCCAAAAGCTTATGATTTCATTTTTGTTAGTTCTTCTAGAAAATCTCTTAGGATTGTTTCTATTTTCCATCTGTTCTTAATCTTCAGGTTTATAAATTTAAAGATACTGGTCTAGTATCTTAAGCAAGTTGTTGAAGACCATTTGGAGCCTGCTGTTTCATTTAGGCTTTATTTGGATTGGTAGATTTTAAATCCTTCCAAGAATTTAAAATTGTTAGTAGGCAACTCAATTGTTTATTTGTTAACTTTCCATAATAAACATTTTTATTTCCTATATTGCTATCCATTGCTCAAACTGCAATGATTTCAAAATGGCATTAGTGTTGGAAAAAATTGAAATCCACTAAAGATAGTTAGAAAATACTTGGGGGTTTGGACAATATTTGGTTGGAGAAAAGAAAGGAGTTTTGAAGTAGACTTGGAAAAAGGTAATTGAATTCAAATTGTATTTGGACAATAACTGGTTGATGTTGGAATAAAAGAGTATTTGAAGTTGAAGTGGAAGAAATGTATGTGGAAGTTAATTGTGTTTGAACATGAATTTCACTTGGAATGAGTTCTCTGAGCACTCAAATTATCAAATTAATATGGATCCCACATTAGGTGGCTTGTGGCGACTTGGCAAATTGATAGTTGATGCTATTCGTGGAAATGTTTAAAGCATCTTTATGCGTTTTCATCCAAATAGATCTATGGATTTCAAATCACTTGAGTCTCATTTGAGCATTAATTTTTCCTACCAGAAGTTTTTTTAACACATGAACATTAGTTTGATTGGATGGGAATTTTTCTGCTCTTCTTCTAATCCCCCCCCCCCCCCCCCCCTCTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGTGACTACTTCTTTTGTTTTGGTTCCCCCTCTTTGATTCCTTCTTTATTTTACGAAGTCACGCTTGTGCCTGTTTAGCTTTTCGTTCTGGAGGTTGATTGATATCATTCTGGTTGCACGTCATTGATGTTCTTTTTGGTTTGTGTAGGTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAGGCAAGTGAGCTACATTATATGTTCTGTTTAAGCTATATTTGTACACCGTATTTTAGAATATTATTTAACCTTTTGATTTGAAATTGATAACATAATTGCAGAATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCAAGGACATGATGGGTATGTTTGGTGGTGGTGGTGGAGAGTAATAATGGAATCACAATTGAACTACAGTTTACGTCGTCAATTCATAGTTGGTGGAAATAGCATGTAACCAAATCTCTGTCACTCCCTATCTTTCAAATTTTGAATCTGATGCATTTGGTAAATTTATTTGATTCAGAATGAAACACTGTATGGTTTTGATGCTCCACTTCATGCTATGCTTGTATGACATGATCTCTTCATAC</genome_strand>
        <mrna_strand>GTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG.....................................................................................................AATTGGACAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCAAGGACATGATGGGTATGTTTGGTGGTGGTGGTGGAGAGTAATAATGGAATCACAATTGAACTACAGTTTACGTCGTCAATTCATAGTTGGTGGAAATAGCATGTAACCAAATCTCTGTCACTCCCTATCTTTCAAATTTTGAATCTGATGCATTTGGTAAATTTATTTGATTCAGAATGAAACACTGTATGGTTTTGATGCTCCACTTCATGCTATGCTTGTATGACATGATCTCTTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702875" ref_strand="+" ref_description="SGN-E702875 [FA19DG06]">
      <seq>cagtaccttgccacaaaggtcaaagatttggaaattgagcttgattccctaaaacagagtggccaagagaacctgcagcaagcagttctaactgagaaggaaaaatttactgaaatgcaatgggatatggaggaacttagaagaaagtgtgtggagatggaattgaagctggcggctgaacaggctgacaagattcggatggaatcaactcaaagaatcatagtacaagagaatgaaagactgtaccaagaattggatgctgctcaacagcagaacaatagcttgcagaaactccatttggagttggagtcgaagtccaacacagatgtcaaacttttagtcaaggaggttaaatctctacgaagttcccacacagaactcaagcaagagctcagcaacttggcaaaagagaaggcagaagttgaaatgattttacgggaggaaaggcaaactagggaacatgctaccgctgcaaatattaagctgctgcatgagtatgaaattcttcgcagtagactggaggaatgcagtgtcagttttctcatcgaggaagaaaataaactggttctgaatgcttctatcccttcggatgccattgatatgctgtcaacatctgatgatcgaataggtctacttcttgcagaggcccagatcctagcacaagatgttgaaactactgttgctggtggaaatcttgatggagaatattcatgcacaacagtggatgaattgaggaaacaactagctgatgtgtatgttgacaatgccaaattgaggaaacagatgaattctgtcattcgttatgcactacaaacagctagtaggtcaaaggacaatgaggaagagaacccttctacaaagacagctcttacgaagtctttagatggatgatttataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80821" stop="64623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67014" g_stop="66831" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66830" i_stop="66745" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.107" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66744" g_stop="66502" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="426" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66501" i_stop="66280" i_length="222">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66279" g_stop="66061" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="645" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66060" i_stop="65178" i_length="883">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65177" g_stop="64923" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="900" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E702875" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67014" e_stop="66831"/>
          <exon e_start="66744" e_stop="66502"/>
          <exon e_start="66279" e_stop="66061"/>
          <exon e_start="65177" e_stop="64923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTGGACTTACACAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAGGTCTACTGTCACTCTCTTGTATTACAAAATGTGATATTTCTTCTATATTTCGGACAGTGAGCAAGTTCTTACTGAAAATTGTTAAGGCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTTTACGAAGTTCCCACTCAGAACTCAAGCAGGAGCTCAGCAACTTGGCTAAATAGAAGGCAGAAGTTGAAGTAATCATTCACTTCATTGTTTTTTATTAATGCATAGTCATTCTTTAAATGGATACTTGTTAGTGCAGTGGATATGCAATTGATCTCTTGTATTTAGGGTTAAACCAAGGATATATTGTGCTTTTCATTTTCTTGTCCCTGGGGAAGGGTGGGGTTGTAAATTTTTCTCCGTAGGTCTGTCCTTCAATAAACTGTGAAAATAATGATGTTCCTTTCTTTCAGATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAGGTGTGTCTTTACTTTTTGTGCTTTCATTTGGGCTGTTCTTGGCTGTGCTTTTCCTAAATGCTCTTGAATTACACGTGGTTTTCTCTAACAGAAAAACTACATACAATTTATGTTCTACTCAGATGCTTGAGATCCGTGTTTTTTCTTAAGATCAAGTTTCCAGTCTTCTGTACAACATCCAAAAGGAAATAAATAGATATACCAAACATTTTAGCGAAAGGGAAAAAATGGGAAGAATATGAAGAAACCAATATCCTGCCCTAAAGAGTATTGGTTTAACAATTGGATGAGATTATAAACATTTCTTTAGCATCTTATGTGGACTCTGATTACCAGAGGAGAACGCTTTGATTATACTGAGGTATTACTGTCTTTATTGTTCTGTTCTTGGTGCTTGGGAATCAAGAACATAAGTAGATAAAAGGTTGGGGAAAAAAATAGAGAGTTCTACCAACTGGGAACGAAGAAGTAAAAAACAAGGAGAGCGCTATCACCTTTCTGACTTGCCAATTTCCTTCATGTGTTGCTTAGCAATTATATCTGTTGCTAAGCAGATAAAGGAACAACAAGGAACCCAGCTTTTAATTACTGGGTTACAAGGACAAGATAATATCATAGTATTATACCATATGCTAGTGTGATTTACTAGATCTAACTTAGACGTAGCAACCTACCAAATTAGTAACTTGATTGTTTGATATCCAGCCCTACATGAATTAGTATGGCTATACATTTGTTGCAATGTTGTGTGTTTCAGATCTTGTTATTTTTTGCCGTTATAAATTCTGTTGATTGGCTGAGTCATTATGATGAGGAAGGAAAAACTTGCATGAACATGCTCAAATCTCTCTCATTCCTCTTTCTTCCTTGATGTCTTAAACAGGCCCAGATCCTAGCACAAGATGTTGAAACTACTGTTGCTGGTGGAAATCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGGATGATTTATAAAA</genome_strand>
        <mrna_strand>CAGTACCTTGC-CACAAAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAG......................................................................................GCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTCTACGAAGTTCCCACACAGAACTCAAGCAAGAGCTCAGCAACTTGGCAAAAGAGAAGGCAGAAGTTGAA..............................................................................................................................................................................................................................ATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGATCCTAGCACAAGATGTTGAAACTACTGTTGCTGGTGGAAATCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGGATGATTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700063" ref_strand="+" ref_description="SGN-E700063 [FA12AB01]">
      <seq>atcccctgaaatgcaatgcgcaatggaggaacttacaagaaagtgcgtggagatggaattgaagctggcggctgaacaggctgacaagattcggatggaatcaactcaaagaatcatagtacaagagaatgaaagactgtaccaagaattggatgctgctcaacagcagaacaatagcttgcagaaactccatttggagttggagtcgaagtccaacacagatgtcaaacttttagtcaaggaggttaaatctctacgaagttcccacacagaactcaagcaagagctcagcaacttggcaaaagagaaggcagaagttgaaatgattttacgggaggaaaggcaaactagggaacatgctaccgctgcaaatattaagctgctgcatgagtatgaaattcttcgcagtagactggaggaacgcagcgtcagttttctcatcgaggaagaaaataaactggttctgaatgcttctatcccttcggatgccattgatatgctgtcaacatctgatgatcgaataggtctacttcttgcagaggcccacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="67204" stop="65760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66909" g_stop="66831" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66830" i_stop="66745" i_length="86">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.107" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66744" g_stop="66502" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="322" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66501" i_stop="66280" i_length="222">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66279" g_stop="66061" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="541" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E700063" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66909" e_stop="66831"/>
          <exon e_start="66744" e_stop="66502"/>
          <exon e_start="66279" e_stop="66061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAGGTCTACTGTCACTCTCTTGTATTACAAAATGTGATATTTCTTCTATATTTCGGACAGTGAGCAAGTTCTTACTGAAAATTGTTAAGGCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTTTACGAAGTTCCCACTCAGAACTCAAGCAGGAGCTCAGCAACTTGGCTAAATAGAAGGCAGAAGTTGAAGTAATCATTCACTTCATTGTTTTTTATTAATGCATAGTCATTCTTTAAATGGATACTTGTTAGTGCAGTGGATATGCAATTGATCTCTTGTATTTAGGGTTAAACCAAGGATATATTGTGCTTTTCATTTTCTTGTCCCTGGGGAAGGGTGGGGTTGTAAATTTTTCTCCGTAGGTCTGTCCTTCAATAAACTGTGAAAATAATGATGTTCCTTTCTTTCAGATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG</genome_strand>
        <mrna_strand>ATCCCCTGAAATGCAATGCGCAATGGAGGAACTTACAAGAAAGTGCGTGGAGATGGAATTGAAGCTGGCGGCTGAACAG......................................................................................GCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTCTACGAAGTTCCCACACAGAACTCAAGCAAGAGCTCAGCAACTTGGCAAAAGAGAAGGCAGAAGTTGAA..............................................................................................................................................................................................................................ATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAACGCAGCGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70920" stop="78179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71223" g_stop="71486" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="278" r_length="264" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71487" i_stop="71901" i_length="415">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71902" g_stop="71912" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="289" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71223" e_stop="71486"/>
          <exon e_start="71902" e_stop="71912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGCACAGGTGTACGATAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGCTGCTTATCTCTTAAAGGTTAGATGGTTGATGATGAACGATTACGAAATGTTAAGAATGTTCAGCAAGTATGATTAAAGAATCAAAAATTCCAAATTTTCCGCTAAAATTAATCTATGTAAAGTAAGAATGACGTAAGTAGGCTTGTCTGCGACCTCTGAGAGGTCAACGACGCCGGTCTCGTCTGGGGTCTAGATTCCGGTCGTGACAAAGTTGGTATCAGAGCGCTAGGTTAAATTCCTAGAATAATGAGTTCACATCAACCACATTGAGTAGTTTCTAAGTCATGGTAGTGAAGTGCACCACTATCCTGGATTAGAGACTGCATGATGCGTAGGAAAAACTTCCCTTTTTCTGATCTTATCGTGCTTATCCTAATGTTTGAATTCTTGGTGTTATGAACGTGTCTAACATCAATCTTGTTGTTTTTCAGAGAATGAATAC</genome_strand>
        <mrna_strand>GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733220" ref_strand="+" ref_description="SGN-E733220 [LB04BB12]">
      <seq>cgcctcacttaaagtttcaatctcaagaaaggttagggaggttgtagaggcaaaatataagaatgttggtgcacagaaaggcaaatatattgtgattcatgggattaaatcagattcaaaagcttctatgcagtcaaggggtgatattgatagcttgctccctattgagatttgggctgagatagcagaggagataaggggagtcaagccagtttttgtcattccacacgaaaaagaaagagaaaatgtggaagatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgctcttgttgatgactctgctggagtgatagctacaaatacagctgcgatacaacttgctcacgcacgtggaaaaccaagtattgggctattctgctctgaggataaggccagaagttttgttcccaatgcagaagcaagaaatgtgcaactatttcatcaaatactggaaaattggttgatattgatgttgaagctgtgaagagtgctgttcaaattttcaccatgcccctagcaatcttctaaatattatacatcctccagttctcttacatatagtaattaagtattcctgtaattgttactagttccattttcttctcaattgtaattaatagaagcggaaatatatatattcgttcttttttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101836" stop="100046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101538" g_stop="101341" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101340" i_stop="101188" i_length="153">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101187" g_stop="101082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="304" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100827" g_stop="100742" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="390" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100645" g_stop="100344" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="691" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E733220" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101538" e_stop="101341"/>
          <exon e_start="101187" e_stop="101082"/>
          <exon e_start="100827" e_stop="100742"/>
          <exon e_start="100645" e_stop="100344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAGGTATAATGTCAGTATTTTATTCTCTGTCGGAAAAAGGGCCGACTCGACTACATGGTCATTTTTAGTTCTCGAATTAGCTGATTAGCCTTTTTTCATCAAATGCAAGAAAATTTGTGAGCTATACTAATGGTTTGTAAACTATCATTTGATCAGGGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAGGTAATGTCATCTACTACAAGCTGTAGACGCGGAAATTTTTTGCACCTTCTGCTGTCTTTGTGGGGAGGTTGATATATCTTGGTTTTGTCTGTACAGTATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAACAGAAAAGG</genome_strand>
        <mrna_strand>CGCCTCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAG.........................................................................................................................................................GGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG................................................................................................TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGC-AAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372047" ref_strand="+" ref_description="SGN-E372047 [TUS-30-F2]">
      <seq>cagtttttgtcattccacacgaaaaagaaagagaaaatgtggaagatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgctcttgttgatgactctgctggagtgatagctacaaatacagctgcgatacaacttgctcacgcacgtggaaaaccaagtattgggctattctgctctgaggataaggccagaagttttgttcccaatgcagaagcaaagaaatgtgcaactatttcatcaaatactggaaaattggttgatattgatgttgaagctgtgaagagtgctgttcaaattttcaccatgcccctagcaatcttctaaatattatacatcctccagttctcttacatatagtaattaagtattcctgtaattgttactagttccattttcttctcaattgtaattaatagaagcggaaatatatatattcgttcttttttctcanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101476" stop="100040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101176" g_stop="101082" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100827" g_stop="100742" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="181" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100645" g_stop="100346" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="481" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="512"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E372047" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101176" e_stop="101082"/>
          <exon e_start="100827" e_stop="100742"/>
          <exon e_start="100645" e_stop="100346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAGGTAATGTCATCTACTACAAGCTGTAGACGCGGAAATTTTTTGCACCTTCTGCTGTCTTTGTGGGGAGGTTGATATATCTTGGTTTTGTCTGTACAGTATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAACAGAAAA</genome_strand>
        <mrna_strand>CAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG................................................................................................TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCANAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372046" ref_strand="+" ref_description="SGN-E372046 [TUS-30-F2](-)">
      <seq>ccagtttttgtcattccacacgaaaaagaaaaagaaaatgtggaaaatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgcttttgttgatgactttgctggagtgatagctacaaatacagctgcgatacaacttgctcacgcacgtggaaaaccaagtattgggctattttgctttgaggataaggccaaaagttttgttcccaatgcaaaagcaaaaaaatgtgcaactatttcatcaaatactggaaaattggttgatattgatgttgaaactgtgaaaagtgctgttcaaattttccccatgcccctagcaattttttaaatattatacatcctccagtttttttacaaatagtaattaagtattcctgtaattgttactagttccatttttttttcaattgtaattaataaaagcgggaaatatatatattcgtttttttttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101477" stop="97676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101177" g_stop="101082" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100827" g_stop="100742" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="182" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100645" g_stop="100358" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="471" r_length="289" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="513"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E372046" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101177" e_stop="101082"/>
          <exon e_start="100827" e_stop="100742"/>
          <exon e_start="100645" e_stop="100358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAGGTAATGTCATCTACTACAAGCTGTAGACGCGGAAATTTTTTGCACCTTCTGCTGTCTTTGTGGGGAGGTTGATATATCTTGGTTTTGTCTGTACAGTATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGC-GGAAATATATATATTCGTTCTTTTTT</genome_strand>
        <mrna_strand>CCAGTTTTTGTCATTCCACACGAAAAAGAAAAAGAAAATGTGGAAAATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTTTTGTTGATGACTTTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG................................................................................................TATTGGGCTATTTTGCTTTGAGGATAAGGCCAAAAGTTTTGTTCCCAATGCAAAAGCAAAAAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAACTGTGAAAAGTGCTGTTCAAATTTTCCCCATGCCCCTAGCAATTTTTTAAATATTATACATCCTCCAGTTTTTTTACAAATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTTTTTTCAATTGTAATTAATAAAAGCGGGAAATATATATATTCGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283032" ref_strand="+" ref_description="SGN-E283032 [cLER-17-H21]">
      <seq>cagtttttgtcattccacacgaaaaagaaagagaaaatgtggaagatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgctcttgttgatgactctgctggagtgatagctacaaatacagctgcgatacaacttgctcacgcacgtggaaaaccaagtattgggctattctgctctgaggataaggccagaagttttgttcccaatgcagaagcaaagaaatgtgcaactatttcatcaaatactggaaaattggttgatattgatgttgaagctgtgaagagtgctgttcaaattttcaccatgcccctagcaatcttctaaatattatacatcctccagttctcttacatatagtaattaagtattcctgtaattgttactagttccattttcttctcaattgtaattaatagaagcggaaatatatatattcgttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101476" stop="100059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101176" g_stop="101082" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100827" g_stop="100742" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="181" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100645" g_stop="100359" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="468" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E283032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101176" e_stop="101082"/>
          <exon e_start="100827" e_stop="100742"/>
          <exon e_start="100645" e_stop="100359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAGGTAATGTCATCTACTACAAGCTGTAGACGCGGAAATTTTTTGCACCTTCTGCTGTCTTTGTGGGGAGGTTGATATATCTTGGTTTTGTCTGTACAGTATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTT</genome_strand>
        <mrna_strand>CAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG................................................................................................TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317734" ref_strand="+" ref_description="SGN-E317734 [cTOA-30-C17]">
      <seq>gattttcctgaaccagctgagtatacggatatgcttggaattcttaagagtaggtactatgatatgatcttgtcaaccaaactggcagggattggacatgcagtatttttgtttatgtcgactgctcgtgacagagttagctacatttacccaaatgtgaattctgcaggagcaggattgtttctgtcagaaacttttacaccagaaagcatgaacctctccgagggcggatatcatatgtaccgtcagatggttgattggttgggcagaccagctcgtaaagtacctcgacaacctttacccccacttaaagtttcaatctcaagaaaggttagggaggttgtagaggcaaaatataagaatgttggtgcacagaaaggcaaatatattgtgattcatgggattaaatcagattcaaaagcttctatgcagtcaaggggtgatattgatagcttgctccctattgagatttgggctgagatagcagaggagataaggggagtcaagccagtttttgtcattccacacgaaaaagaaagagaaaatgtggaagatgcagttggttacgatgctagtatagtgttcataaccacccctggacagcttgctgctcttgttgatgactctgctggagtgatagctaccaatacagctgcgatacaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102736" stop="100464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102436" g_stop="102389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101927" g_stop="101737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="239" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101736" i_stop="101599" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101598" g_stop="101341" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="497" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101340" i_stop="101188" i_length="153">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101187" g_stop="101082" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="603" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100827" g_stop="100764" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="667" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E317734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102436" e_stop="102389"/>
          <exon e_start="101927" e_stop="101737"/>
          <exon e_start="101598" e_stop="101341"/>
          <exon e_start="101187" e_stop="101082"/>
          <exon e_start="100827" e_stop="100764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATATGTAAGTAGATGTTCCAACTGATAACTTGATCTTTTTGACTACTGAATATTCATTTCAAAATAGGGAGTTTGAAAAGTGCAACAGTTGTACTTCGTCAAAGTTTGTATAAACATGTTTACATACACTTTTTTGAAATAGGTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAGGTATAATGTCAGTATTTTATTCTCTGTCGGAAAAAGGGCCGACTCGACTACATGGTCATTTTTAGTTCTCGAATTAGCTGATTAGCCTTTTTTCATCAAATGCAAGAAAATTTGTGAGCTATACTAATGGTTTGTAAACTATCATTTGATCAGGGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAGGTTTGTTTTCTCAACCACTTTCACAATATCAATGACCGATGATCAACCAGTGTTTAGTTGAACAACCATAAAAGAAGAAATTGGTTGGAGTCACAGATATAATGGCAACAATTTACAGTCATATTCAAGGAGGGTATAATCAAATGAAAGTAGTTTGCTTCTGTTGCATGTTTAGTGGCAGCTTTAACTATAGTCTATATACCGCGGGATGAGCACTAGAAAACTAACAGTCCCTGCATATTTCTCTGCCTTAGCTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTG</genome_strand>
        <mrna_strand>GATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT..........................................................................................................................................GTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAG.........................................................................................................................................................GGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG..............................................................................................................................................................................................................................................................CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACCAATACAGCTGCGATACAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294596" ref_strand="+" ref_description="SGN-E294596 [cLET-22-L5]">
      <seq>tgggctaatgcctatgatctggatgatgattttcctgaaccagctgagtatacggatatgcttggaattcttaagagtaggtactatgatatgatcttgtcaaccaaactggcagggattggacatgcagtatttttgtttatgtcgactgctcgtgacagagttagctacatttacccaaatgtgaattctgcaggagcaggattgtttctgtcagaaacttttacaccagaaagcatgaacctctccgagggcggatatcatatgtaccgtcagatggttgattggttgggcagaccagctcgtaaagtacctcgacaacctttacccccacttaaagtttcaatctcaagaaaggttagggaggttgtagaggcaaaatataagaatgttggtgcacagaaaggcaaatatattgtgattcatgggattaaatcagattcaaaagcttctatgcagtcaaggggtgatattgatagcttgctccctattgagatttgggctgagatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102763" stop="101053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102463" g_stop="102389" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101927" g_stop="101737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="266" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101736" i_stop="101599" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101598" g_stop="101353" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="512" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E294596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102463" e_stop="102389"/>
          <exon e_start="101927" e_stop="101737"/>
          <exon e_start="101598" e_stop="101353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATATGTAAGTAGATGTTCCAACTGATAACTTGATCTTTTTGACTACTGAATATTCATTTCAAAATAGGGAGTTTGAAAAGTGCAACAGTTGTACTTCGTCAAAGTTTGTATAAACATGTTTACATACACTTTTTTGAAATAGGTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGC</genome_strand>
        <mrna_strand>TGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT..........................................................................................................................................GTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328695" ref_strand="+" ref_description="SGN-E328695 [cTOC-23-C12]">
      <seq>ccatttctcctttctttgctaatccacctaattttcctgtaacccatgtcacaaatgtacctttcttgaaccacaatccatcttttcccgccagaaaatcagggaatttttgcctcaatgccaagaaaaaaaatccatggcttgacccttttgactatggtgatgatcctgaaatggaatatggttcacttttttctgaagggaaacaagatgaagatccaaggccacctgataatcctgataacccatatggatttctcaaattcccaatgggatactctgttgagattgcttcgttgggtttgaaaattagaggtgatgttcggagatgttgttgtgttattgatggtggggtttatgagaatttgctgttctttccagtaattcagatgattaaggataggtaccctggtgttcaagtggatatacttgcaacagccaggggaaaacagacatttgagatgaataaaaatgtgaggtgggctaatgcctatgatctggatgatgattttcctgaaccagctgagtatacggatatgcttggaattcttaagagtaggtactatgatatgatcttgtcaaccaaactggcagggattggacatgcagtatttttgtttatgtcgactgctcgtgacagagttagctacatttacccaaatgtgaattctgcaggagcaggattgtttctgtcagaaacttttacaccagaaagcatgaacctctccgaaggcggatatcatatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103242" stop="101434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102942" g_stop="102389" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101927" g_stop="101737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="745" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E328695" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102942" e_stop="102389"/>
          <exon e_start="101927" e_stop="101737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAGGTTTCATGCCGTTCCATTAACATTAACATCGATTCATAATTATTTAAATTCTACGTTGCTTGGACTCTTCAAAAATGTTGATTTTAAAGTGCATTACTTTTGGAAGTATCCGACACACATTAATCTACGAGCAACATAGGTTTAAGCAAGTTGTTTCATTTGAAGTATGATTCTTGTCGTGCCTTGATGTATTAGCACCTAAAATTAGAGAAAGTAACAAACATTATATGGAAACTTAGTTAAATACGAAGATTTAACTATGGTTATCTTATGAGTTTGCAGATAATTCAAAAGTTGAGCAGACTACGTTTGGAAAAAGAATCGCTTAGATTAGCTTCAAGATGCTGTTCGTCTTGTTTAGTCAGATAGAGATAAAAGAATTTGCTTCCTGCATTATGAATAGAGAGTTATAGTCATTTTTTTGGGCTAAGTTATTTGCTTTAATGCATGGTTTGTTGCAGAGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT</genome_strand>
        <mrna_strand>CCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAAGGCGGATATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282715" ref_strand="+" ref_description="SGN-E282715 [cLER-15-D20]">
      <seq>tgtaacccatgtcacaaatgtacctttcttgaaccacaatccatcttttcccgccagaaaatcagggaatttttgcctcaatgccaagaaaaaaaatccatggcttgacccttttgactatggtgatgatcctgaaatggaatatggttcacttttttctgaagggaaacaagatgaagatccaaggccacctgataatcctgataacccatatggatttctcaaattcccaatgggatactctgttgagattgcttcgttgggtttgaaaattagaggtgatgttcggagatgttgttgtgttattgatggtggggtttatgagaatttgctgttctttccagtaattcagatgattaaggataggtaccctggtgttcaagtggatatacttgcaacagccaggggaaaacagacatttgagatgaataaaaatgtgaggtgggctaatgcctatgatctggatgatgattttcctgaaccagctgagtatacggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103205" stop="102104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102905" g_stop="102404" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E282715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102905" e_stop="102404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATG</genome_strand>
        <mrna_strand>TGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312028" ref_strand="+" ref_description="SGN-E312028 [cTOA-16-P6]">
      <seq>tactatctaactccatttctgctttctttgctaatccacctaattttcctgtaacccatgtcacaaatgtacctttcttgaaccacaatccatcttttcccgccagaaaatcagggaatttttgcctcaatgccaagaaaaaaaatccatggcttgacccttttgactatggtgatgatcctgaaatggaatatggttcacttttttctgaagggaaacaagatgaagatccaaggccacctgataatcctgataacccatatggatttctcaaattcccaatgggatactctgttgagattgcttcgttgggtttgaaaattagaggtgatgttcggagatgttgttgtgttattgatggtggggtttatgagaatttgctgttctttccagtaattcagatgattaaggataggtaccctggtgttcaagtggatatacttgcaacagccaggggaaaaacagacatttgggatgaataaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103254" stop="102168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102954" g_stop="102468" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E312028" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102954" e_stop="102468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATCTAACTCCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGG-AAAACAGACATTTGAGATGAATAAAAATGT</genome_strand>
        <mrna_strand>TACTATCTAACTCCATTTCTGCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAAACAGACATTTGGGATGAATAAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342280" ref_strand="+" ref_description="SGN-E342280 [cTOF-8-E6]">
      <seq>ccagatcggacagtcaccattttctcaataaattcttctcgccgataatgtatctgctctctcactccttagggttttaattctctactttccggtccatacaattacaatgcaccttctttttcccttcactgtcttgctcttcaaccctagctaagcacagttgaagaaaattcatgctaagttcaacgaatttctagttactaggagttgtaattgtttcaatgtctggaggacctagggttaaattgatgaacaatgctgattctgaagtccgatcagtgctcgggccggcgggtaacaaggctagatccgttgaattacgaaagcccgttgatatacctgttaagaaggctgctgaaagtgaagagactaagggtaagaaatttgagggaacggattccgtgccgctatcacgggcaaggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105684" stop="106713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105984" g_stop="106413" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E342280" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105984" e_stop="106413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGAAAAGCCTGTTAAGAAGGCTGCTGAAAGTGAAGAGTCTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCAATCACGGGCGAGGAAATG</genome_strand>
        <mrna_strand>CCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGATATACCTGTTAAGAAGGCTGCTGAAAGTGAAGAGACTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCTATCACGGGCAAGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210898" ref_strand="-" ref_description="SGN-E210898 [cLEC-69-C2]">
      <seq>tttttttttttttttttttgtatacacaaacggaaaggttttataaatcaaattataaaaaatatttattggagcaaatccaccctttaaatttcaaggggcccccaaaagtctcaatcttgtgagactgaaaaggagcaaactgagacctaagtaatatagggtgctatagaaaattagcccatcccattttcacgtgcacttactagtcctacctactggatactgttctcccaaaaaaaaagaagacaaatatagtaaacaatatatacaatttataacgacatgtcntagtggctgcctgtctttctctggaacatttcaatgtgtcaacataattttcgttttaattatttatccttagtgttactattattttgcaagaattttcctgatatggcggctgctaaggctgcttgaaaacttggatctttagtcaatgatgaagccatttgttctatcaagaaatgttgaaactctggtctattttgctgttgttgatcagttcctggtgatttacgcttctgaccacttgcactacttgtacttgtaatgctatgaacttttttgatatcattttgtaatgtttttggttctgccaaatcaagagttaaggtttgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="+" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="97677" stop="114467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113376" g_stop="113376" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113377" i_stop="113546" i_length="170">
            <donor d_prob="0.614" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113547" g_stop="114167" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="625" r_length="624" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="+" ref_id="SGN-E210898" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210898" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113376" e_stop="113376"/>
          <exon e_start="113547" e_stop="114167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTCTTTTCTTCTATTGACTTCAACGTGGCCTCCATTTTTTAACTCTAGTCGATTAGAGTCGAAACCAATAAGAAAAAACACAGTAGTAAACAAGCTTGTCGTGTTAAAACAGTTTTAAAATATTTTTAACATGATATGATATTATCCATTTTTGTTCATTTCAACAGTTAAAATAGACTTCATTTGTATACACAAACGGAAAGG-TCTATAAATCAAATTAT-AAAAATATTTATTTGAGCAAATCCAACACTTTAATTTCAA-GGGCCACCAAAAGTCTCAATCTTGTGAGACTGAAAAGGAGCAAACTGAGACCTAACTAATATAGGCTGCTATAGAAAATTAGCCCATCCCATTTTCACGTGCACTTACTAGTCCTACCTACTGGCTACTGTTCTCCCAAAAAAAAAGAAGACAAATATAGTAAACAATATATACAATTTATAACGACATGTCCTAGTGGCTGCCTGTCTTTCTCTGGAACATTTCAATGTGTCAACATAATTTTCGTTTTAATTATTTATCCTTAGTGTTACTATTATTTTGCAAGAATTTTCCTGATATGGCGGCTGCTAAGGCTGCTTGAAAACTTGGATCTTTAGTCAATGATGAAGCCATTTGTTCTATCAAGAAATGTTGAAACTCTGGTCTATTTTGCTGTTGTTGATCAGTTCCTGGTGATTTACGCTTCTGACCACTTGCACTACTTGTACTTGTAATGCTATGAACTTTTTTGATATCATTTTGTAATGTTTTTGGTTCTGCCAAATCAAGAGTTAAGGTTTGTCTTG</genome_strand>
        <mrna_strand>T..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGTATACACAAACGGAAAGGTTTTATAAATCAAATTATAAAAAATATTTATTGGAGCAAATCCACCCTTTAAATTTCAAGGGGCCCCCAAAAGTCTCAATCTTGTGAGACTGAAAAGGAGCAAACTGAGACCTAAGTAATATAGGGTGCTATAGAAAATTAGCCCATCCCATTTTCACGTGCACTTACTAGTCCTACCTACTGGATACTGTTCTCCCAAAAAAAAAGAAGACAAATATAGTAAACAATATATACAATTTATAACGACATGTCNTAGTGGCTGCCTGTCTTTCTCTGGAACATTTCAATGTGTCAACATAATTTTCGTTTTAATTATTTATCCTTAGTGTTACTATTATTTTGCAAGAATTTTCCTGATATGGCGGCTGCTAAGGCTGCTTGAAAACTTGGATCTTTAGTCAATGATGAAGCCATTTGTTCTATCAAGAAATGTTGAAACTCTGGTCTATTTTGCTGTTGTTGATCAGTTCCTGGTGATTTACGCTTCTGACCACTTGCACTACTTGTACTTGTAATGCTATGAACTTTTTTGATATCATTTTGTAATGTTTTTGGTTCTGCCAAATCAAGAGTTAAGGTTTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368431" ref_strand="+" ref_description="SGN-E368431 [TUS-23-H1](-)">
      <seq>gaacacaaccattctaaagtggataccgcaggccctgttacatcaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggattagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaatataatatttttataatttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114570" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114270" g_stop="113589" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113423" g_stop="113414" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="693" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E368431" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114270" e_stop="113589"/>
          <exon e_start="113423" e_stop="113414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATA-AATATTTTTATAATTTGATTTATAGACCTTTCCGTTTGTGTATACAAATGAAGTCTATTTTAACTGTTGAAATGAACAAAAATGGATAATATCATATCATGTTAAAAATATTTTAAAACTGTTTTAACACGACAAGCTTGTTTACTACTGTGTTTTTTCTTATTGGTTTCGACTCTAATCGACTAGAGTTAAAAAA</genome_strand>
        <mrna_strand>GAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACATCAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGATTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATATAATATTTTTATAATTTGATTT.....................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377168" ref_strand="+" ref_description="SGN-E377168 [TUS-21-M23](-)">
      <seq>aaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114555" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114255" g_stop="113589" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113423" g_stop="113414" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="677" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E377168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114255" e_stop="113589"/>
          <exon e_start="113423" e_stop="113414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTTTCCGTTTGTGTATACAAATGAAGTCTATTTTAACTGTTGAAATGAACAAAAATGGATAATATCATATCATGTTAAAAATATTTTAAAACTGTTTTAACACGACAAGCTTGTTTACTACTGTGTTTTTTCTTATTGGTTTCGACTCTAATCGACTAGAGTTAAAAAA</genome_strand>
        <mrna_strand>AAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT.....................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390792" ref_strand="+" ref_description="SGN-E390792 [TUS-44-G5](-)">
      <seq>aaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattcaagtgttggatttgctcaaataaatatttttataatttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114461" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114161" g_stop="113589" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113423" g_stop="113414" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="583" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E390792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114161" e_stop="113589"/>
          <exon e_start="113423" e_stop="113414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTTTCCGTTTGTGTATACAAATGAAGTCTATTTTAACTGTTGAAATGAACAAAAATGGATAATATCATATCATGTTAAAAATATTTTAAAACTGTTTTAACACGACAAGCTTGTTTACTACTGTGTTTTTTCTTATTGGTTTCGACTCTAATCGACTAGAGTTAAAAAA</genome_strand>
        <mrna_strand>AAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTCAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT.....................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227065" ref_strand="+" ref_description="SGN-E227065 [cLED-1-P20](-)">
      <seq>aaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114433" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114133" g_stop="113589" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113423" g_stop="113414" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="555" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E227065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114133" e_stop="113589"/>
          <exon e_start="113423" e_stop="113414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTTTCCGTTTGTGTATACAAATGAAGTCTATTTTAACTGTTGAAATGAACAAAAATGGATAATATCATATCATGTTAAAAATATTTTAAAACTGTTTTAACACGACAAGCTTGTTTACTACTGTGTTTTTTCTTATTGGTTTCGACTCTAATCGACTAGAGTTAAAAAA</genome_strand>
        <mrna_strand>AAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT.....................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392463" ref_strand="+" ref_description="SGN-E392463 [TUS-36-C18](-)">
      <seq>acaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114531" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114231" g_stop="113580" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E392463" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114231" e_stop="113580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTT</genome_strand>
        <mrna_strand>ACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395921" ref_strand="+" ref_description="SGN-E395921 [TUS-18-H13](-)">
      <seq>cgatttaacccgaaaaataatacttatgctgcggcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114510" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114210" g_stop="113580" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E395921" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114210" e_stop="113580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTT</genome_strand>
        <mrna_strand>CGATTTAACCCGAAAAATAATACTTATGCTGCGGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368131" ref_strand="+" ref_description="SGN-E368131 [TUS-22-C6](-)">
      <seq>attgaaatgttccacagaaaggcaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgctccttttcagtctcacaagattgagacttttggtggcccttgaaattaaagtgttggatttgctcaaataaatatttttataatttgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114168" stop="113284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113868" g_stop="113580" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E368131" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113868" e_stop="113580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTT</genome_strand>
        <mrna_strand>ATTGAAATGTTCCACAGAAAGGCAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392676" ref_strand="+" ref_description="SGN-E392676 [TUS-36-H15](-)">
      <seq>agccgatttaacccgaaaaataatatttatgctgccgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacattttttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgttttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggttaattttttatagcagcctatattagttaggtttcagtttggtccttttcagtctcacaagattgagacttttggtggccctggaaattaaagtgttggatttgctcaaataaatatttttataattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114513" stop="113292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114213" g_stop="113583" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E392676" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114213" e_stop="113583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGAC</genome_strand>
        <mrna_strand>AGCCGATTTAACCCGAAAAATAATATTTATGCTGCCGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTTTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTTTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGTTAATTTTTTATAGCAGCCTATATTAGTTAGGTTTCAGTTTGGTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTGGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390566" ref_strand="+" ref_description="SGN-E390566 [TUS-44-I5](-)">
      <seq>gaaaaataatacttatgctgctgcggtaatgccaagactaaccttaactcatgactaggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtgcaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagagcaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtatcactaaggataaataattaaaacgaaaattatgttgccacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatattagtcttctttttttttgggagaacagtagccagtatgttggagtagtaagtgcacgtgaaaatgggatggggtaattttctatagcagcctatattagttaggtctcagtctgctccttttcagtctcacaagagtgagacttttggtggccctagaaattaaagtgtgggatttgctcaaataaatatttttataataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114499" stop="113296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114199" g_stop="113598" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="620"/>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E390566" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114199" e_stop="113598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATA</genome_strand>
        <mrna_strand>GAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACTAACCTTAACTCATGACTAGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTGCAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAGCAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTATCACTAAGGATAAATAATTAAAACGAAAATTATGTTGCCACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTAGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTATGTTGGAGTAGTAAGTGCACGTGAAAATGGGATGGGGTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTCTGCTCCTTTTCAGTCTCACAAGAGTGAGACTTTTGGTGGCCCTAGAAATTAAAGTGTGGGATTTGCTCAAATAAATATTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368432" ref_strand="+" ref_description="SGN-E368432 [TUS-23-H1]">
      <seq>cgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataaattgtatatattgtttactatatttgtcttctttttttttgggagaacagtagccagtaggtaggactagtaagtgcacgtgaaaatgggatgggctaattttctatagcagcctatattagttaggtctcagtttgcttcttttcagtctcacaagattgagacttttggtggcctttgaaattaaagtgttggatttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114623" stop="113312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114321" g_stop="113612" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="723" r_length="710" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E368432" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114321" e_stop="113612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAA</genome_strand>
        <mrna_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTTCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCTTTGAAATTAAAGTGTTGGATTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227147" ref_strand="+" ref_description="SGN-E227147 [cLED-1-P14](-)">
      <seq>tatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtcaagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114579" stop="97676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114279" g_stop="113844" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113843" i_stop="113773" i_length="71">
            <donor d_prob="0.911" d_score="0.68"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113772" g_stop="113764" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="445" r_length="9" r_score="0.444"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E227147" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114279" e_stop="113844"/>
          <exon e_start="113772" e_stop="113764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGC</genome_strand>
        <mrna_strand>TATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCAAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377524" ref_strand="+" ref_description="SGN-E377524 [TUS-20-B3](-)">
      <seq>actgaaccatctgatactttttttatagtgaaagatggataccagtggaggaaatatggacaaaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaaaaaaaaggttcaaagaagcgtggaagaccaatcgattttagtagcaacctatgaaggagaacccaaccattttaaagtggataccgcaggccctgttacaacaacttccccgtttagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaacttttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagggcaagtggtcagaagggtaaatccccaggaactgatcaacaacagcaaaatagaccagagtttcaacattttttgatagaacaaatgggttcatcattgaataaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaaccctaaggataaataattaaaacgaaaattatgtgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115581" stop="97676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115281" g_stop="115258" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="113844" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="619" r_length="478" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113843" i_stop="113773" i_length="71">
            <donor d_prob="0.911" d_score="0.64"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113772" g_stop="113765" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="627" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E377524" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115281" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113844"/>
          <exon e_start="113772" e_stop="113765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAG</genome_strand>
        <mrna_strand>ACTGAACCATCTGATACTTTTTTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAAAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTTTAGTAGCAACCTATGAAGGAGAACCCAACCATTTTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTTTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTTTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGGGCAAGTGGTCAGAAGGGTAAATCCCCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTTTTGATAGAACAAATGGGTTCATCATTGAATAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACCCTAAGGATAAATAATTAAAACGAAAATTATGTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235683" ref_strand="+" ref_description="SGN-E235683 [cLED-15-H21]">
      <seq>tcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactaggacatgtcgttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115162" stop="113518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114862" g_stop="114830" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114321" g_stop="113818" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="537" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114862" e_stop="114830"/>
          <exon e_start="114321" e_stop="113818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAA</genome_strand>
        <mrna_strand>TCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241936" ref_strand="+" ref_description="SGN-E241936 [cLED-27-N22]">
      <seq>gaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttacccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactattgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccggcatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttccagagaaagacaggcagccactacgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114606" stop="113527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114306" g_stop="113827" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E241936" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114306" e_stop="113827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATG</genome_strand>
        <mrna_strand>GAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTACCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTATTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGGCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTACGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392217" ref_strand="+" ref_description="SGN-E392217 [TUS-36-C18]">
      <seq>cacagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114846" stop="113557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114546" g_stop="113857" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E392217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114546" e_stop="113857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTC</genome_strand>
        <mrna_strand>CACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202626" ref_strand="+" ref_description="SGN-E202626 [cLEC-19-J6]">
      <seq>gaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115583" stop="113561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115283" g_stop="115258" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="113861" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="604" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E202626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115283" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAAT</genome_strand>
        <mrna_strand>GAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237694" ref_strand="+" ref_description="SGN-E237694 [cLED-19-F11]">
      <seq>cgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcaggaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114623" stop="113561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114321" g_stop="113861" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="474" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E237694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114321" e_stop="113861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAAT</genome_strand>
        <mrna_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243612" ref_strand="+" ref_description="SGN-E243612 [cLED-34-O6]">
      <seq>tcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttnaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcagccttagcagccgccatatcangaaaattcttgcaaaataatagtaacactaaggataaataattaaaacgaaaattatgttgacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115162" stop="113566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114862" g_stop="114830" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114321" g_stop="113866" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="489" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E243612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114862" e_stop="114830"/>
          <exon e_start="114321" e_stop="113866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATT</genome_strand>
        <mrna_strand>TCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTNAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCANGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238407" ref_strand="+" ref_description="SGN-E238407 [cLED-17-J9]">
      <seq>gagcagctcaagttatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagatccaagttttcaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115666" stop="113655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115366" g_stop="115258" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="226" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="113955" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="593" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115366" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAG</genome_strand>
        <mrna_strand>GAGCAGCTCAAGTTATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207423" ref_strand="+" ref_description="SGN-E207423 [cLEC-36-J12]">
      <seq>acacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgactaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115618" stop="113671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115318" g_stop="115258" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="178" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="113971" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="529" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E207423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115318" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGAT</genome_strand>
        <mrna_strand>ACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208537" ref_strand="+" ref_description="SGN-E208537 [cLEC-39-J11]">
      <seq>gatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatctaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaacaaatggcttcatcattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115258" stop="113678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="129" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114321" g_stop="113978" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="473" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E208537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="113978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGAC</genome_strand>
        <mrna_strand>ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATCTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232730" ref_strand="+" ref_description="SGN-E232730 [cLED-8-M11]">
      <seq>acagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacatttcttgatagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114845" stop="113697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114545" g_stop="113997" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E232730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114545" e_stop="113997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAAC</genome_strand>
        <mrna_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243583" ref_strand="+" ref_description="SGN-E243583 [cLED-34-E8]">
      <seq>cgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaatagaccagagtttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114623" stop="113710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114321" g_stop="114010" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="325" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E243583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114321" e_stop="114010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACAT</genome_strand>
        <mrna_strand>GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398529" ref_strand="+" ref_description="SGN-E398529 [TUS-18-H13]">
      <seq>cagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaacaacagcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115767" stop="113728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115467" g_stop="115258" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="327" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114028" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="621" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E398529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115467" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAAT</genome_strand>
        <mrna_strand>CAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207451" ref_strand="+" ref_description="SGN-E207451 [cLEC-36-E21]">
      <seq>tgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcagaagcgtaaatcaccaggaactgatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115777" stop="113739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115477" g_stop="115258" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="337" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114039" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="620" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E207451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115477" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAAC</genome_strand>
        <mrna_strand>TGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390556" ref_strand="+" ref_description="SGN-E390556 [TUS-44-G5]">
      <seq>cacagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattaggggggggatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtggtcaaaagcgtaaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114846" stop="113754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114546" g_stop="114054" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E390556" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114546" e_stop="114054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTA-CAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCAC</genome_strand>
        <mrna_strand>CACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTAGGGGGGGGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAAAAGCGTAAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377169" ref_strand="+" ref_description="SGN-E377169 [TUS-21-M23]">
      <seq>gaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactctttgatttgcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcatttacagtacaagtagtgcaagtggtcagaagcgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115911" stop="113758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115611" g_stop="115258" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="471" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114058" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="735" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E377169" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115611" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTC-TTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAA</genome_strand>
        <mrna_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTTGATTT-GCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTTACAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235785" ref_strand="+" ref_description="SGN-E235785 [cLED-15-C4]">
      <seq>gagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacagcttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagtacaagtagtgcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115666" stop="113772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115366" g_stop="115258" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="226" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114072" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="476" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115366" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTG</genome_strand>
        <mrna_strand>GAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAGCTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325689" ref_strand="+" ref_description="SGN-E325689 [cTOC-15-I22]">
      <seq>taatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatagcattacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115921" stop="113788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115621" g_stop="115258" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114088" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="715" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E325689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115621" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGT</genome_strand>
        <mrna_strand>TAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202374" ref_strand="+" ref_description="SGN-E202374 [cLEC-6-F20]">
      <seq>gctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatttggcagaaccaaaaacattacaaaatgatatcaaaaaagttcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115779" stop="113798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115479" g_stop="115258" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="339" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114098" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="563" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E202374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115479" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAG</genome_strand>
        <mrna_strand>GCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368132" ref_strand="+" ref_description="SGN-E368132 [TUS-22-C6]">
      <seq>acagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttccaacaacttacccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgcctaaacaaaccttaactcttgatttggcacaacccgaaacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114845" stop="113825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114545" g_stop="114123" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E368132" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114545" e_stop="114123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTAC</genome_strand>
        <mrna_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTCCAACAACTTACCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCTAAACAAACCTTAACTCTTGATTTGGCACAACCCGAAACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235408" ref_strand="+" ref_description="SGN-E235408 [cLED-11-J12]">
      <seq>gaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaccttaactcttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115911" stop="113844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115611" g_stop="115258" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="471" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114144" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="649" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115611" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATT</genome_strand>
        <mrna_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238031" ref_strand="+" ref_description="SGN-E238031 [cLED-18-J14]">
      <seq>gaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgctgctgcggtaatgccaagacaaaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115911" stop="113855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115611" g_stop="115258" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="471" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114155" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="639" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238031" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115611" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGAC-AAACCTT</genome_strand>
        <mrna_strand>GAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232944" ref_strand="+" ref_description="SGN-E232944 [cLED-6-I11]">
      <seq>aatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115893" stop="113881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115593" g_stop="115258" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="453" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114181" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="594" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E232944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115593" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</genome_strand>
        <mrna_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228227" ref_strand="+" ref_description="SGN-E228227 [cLED-2-F13]">
      <seq>ggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115816" stop="113881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115516" g_stop="115258" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="376" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114181" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="517" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E228227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115516" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</genome_strand>
        <mrna_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231464" ref_strand="+" ref_description="SGN-E231464 [cLED-4-C22]">
      <seq>aatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaanaataatacttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115814" stop="113881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115514" g_stop="115258" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="374" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114181" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="515" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E231464" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115514" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</genome_strand>
        <mrna_strand>AATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAANAATAATACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244567" ref_strand="+" ref_description="SGN-E244567 [cLED-38-F13]">
      <seq>tattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114832" stop="113881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114532" g_stop="114181" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E244567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114532" e_stop="114181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</genome_strand>
        <mrna_strand>TATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238307" ref_strand="+" ref_description="SGN-E238307 [cLED-17-E15]">
      <seq>acagccacatttttattagattaaactgaacttaattattattttcaacttgaactagttgtagagtactattatcccctttactagcaagggttaaaactgaaaaaatagataaaatttcacttattttgaattcaatacatgttctagatcgcgaatttgtcttttttttccccacagttatatgcattttctaacaatgaactacgtgatatttttgtcaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggataccgcaggccctgttacaacaacttccccgtctagccgatttaacccgaaaaataatacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="114845" stop="113883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114545" g_stop="114183" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114545" e_stop="114183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATG</genome_strand>
        <mrna_strand>ACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213770" ref_strand="+" ref_description="SGN-E213770 [cLEC-76-I1]">
      <seq>caccagcccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagacacaaccattctaaagtggataccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116310" stop="113942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116012" g_stop="115867" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="209" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="578" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="695" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114321" g_stop="114242" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="774" r_length="79" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E213770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116012" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGC</genome_strand>
        <mrna_strand>CACCAGCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAG-ACACAACCATTCTAAAGTGGATACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244710" ref_strand="+" ref_description="SGN-E244710 [cLED-38-M4]">
      <seq>ggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115816" stop="113944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115516" g_stop="115258" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="376" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114244" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="454" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E244710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115516" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACC</genome_strand>
        <mrna_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235799" ref_strand="+" ref_description="SGN-E235799 [cLED-15-G8]">
      <seq>ttgttttgtgcaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115939" stop="113946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115639" g_stop="115258" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="499" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114246" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="575" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115639" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATA</genome_strand>
        <mrna_strand>TTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232815" ref_strand="+" ref_description="SGN-E232815 [cLED-8-A9]">
      <seq>aaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattctaaagtggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115878" stop="113946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115578" g_stop="115258" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="438" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114246" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="514" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E232815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115578" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATA</genome_strand>
        <mrna_strand>AAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549785" ref_strand="+" ref_description="SGN-E549785 [TUS-6-M15]">
      <seq>ggagctgatcaggatcacaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtggaagaccaatcgattctagtagcaacctatgaaggagaacacaaccattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115782" stop="113955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115482" g_stop="115258" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="342" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114321" g_stop="114255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="409" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E549785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115482" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
          <exon e_start="114321" e_stop="114255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAGGTACTACTAATTCGTACAACTTTTAGAGCATAATGAACAGTTTTTACGCTTCCATAGTGTAACGAGACGGTGTAATTTTAGAGCCTAATAAACAATTTTACGCTCTCATAGTGTAACAGACGGTGTATACTAAAAAGTATGAAATATCCCAAGTCATTTTCGATTAGGAAACAACTCAACAAGTAGAAGTAATTTAATAATTAGGTAACCCAACTTTCGTTGAAGTTACTTAGTTCTAGTAGTTGCAGCTTCCAGATATTTTATGTATTTGGTGGCCAGAATTCACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTA</genome_strand>
        <mrna_strand>GGAGCTGATCAGGATCACAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231445" ref_strand="+" ref_description="SGN-E231445 [cLED-4-M13]">
      <seq>gatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtcccgttaagaaaaaggttcaaagaagcgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115931" stop="114520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115731" g_stop="115726" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="375" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114946" g_stop="114830" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="492" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E231445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115731" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG</genome_strand>
        <mrna_strand>GATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227064" ref_strand="+" ref_description="SGN-E227064 [cLED-1-P20]">
      <seq>ggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgctcctacctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115816" stop="114544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115516" g_stop="115258" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114844" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="362" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E227064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115516" e_stop="115258"/>
          <exon e_start="114946" e_stop="114844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTC</genome_strand>
        <mrna_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238531" ref_strand="+" ref_description="SGN-E238531 [cLED-17-I18]">
      <seq>tcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctcttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116316" stop="114554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116016" g_stop="115867" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="213" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="582" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114854" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="675" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116016" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCT</genome_strand>
        <mrna_strand>TCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233080" ref_strand="+" ref_description="SGN-E233080 [cLED-6-F19]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctncaagagcttatttcaaatgctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="114557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115867" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="214" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="583" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114857" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="673" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E233080" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTT</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTNCAAGAGCTTATTTCAAATGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240247" ref_strand="+" ref_description="SGN-E240247 [cLED-25-J19]">
      <seq>aatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115893" stop="114557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115593" g_stop="115258" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114857" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="426" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115593" e_stop="115258"/>
          <exon e_start="114946" e_stop="114857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTT</genome_strand>
        <mrna_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377525" ref_strand="+" ref_description="SGN-E377525 [TUS-20-B3]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="114563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115867" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="214" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="583" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114863" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="667" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E377525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGC</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204556" ref_strand="+" ref_description="SGN-E204556 [cLEC-24-C4]">
      <seq>tcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116188" stop="114565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115888" g_stop="115867" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="85" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="454" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114865" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="536" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E204556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115888" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAAT</genome_strand>
        <mrna_strand>TCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240686" ref_strand="+" ref_description="SGN-E240686 [cLED-21-J13]">
      <seq>gatggatcgaagaaaattaaaattggnnncccgggaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaatccatctccaagagcttatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115758" stop="114565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115458" g_stop="115258" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114865" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="282" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240686" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115458" e_stop="115258"/>
          <exon e_start="114946" e_stop="114865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAAT</genome_strand>
        <mrna_strand>GATGGATCGAAGAAAATTAAAATTGGNNNC-CCGGGAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241878" ref_strand="+" ref_description="SGN-E241878 [cLED-27-O18]">
      <seq>ttgttttgtgcaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacatttaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115939" stop="114591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115639" g_stop="115258" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114891" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="438" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E241878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115639" e_stop="115258"/>
          <exon e_start="114946" e_stop="114891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAA</genome_strand>
        <mrna_strand>TTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTTAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235978" ref_strand="+" ref_description="SGN-E235978 [cLED-16-A6]">
      <seq>aatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115893" stop="114591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115593" g_stop="115258" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114946" g_stop="114891" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="392" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115593" e_stop="115258"/>
          <exon e_start="114946" e_stop="114891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAA</genome_strand>
        <mrna_strand>AATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238581" ref_strand="+" ref_description="SGN-E238581 [cLED-17-B6]">
      <seq>gatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagtaacaagagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116049" stop="114593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115749" g_stop="115726" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="393" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114946" g_stop="114893" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="447" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115749" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGAC</genome_strand>
        <mrna_strand>GATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392677" ref_strand="+" ref_description="SGN-E392677 [TUS-36-H15]">
      <seq>cccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaaaagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataaaaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116310" stop="114602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116010" g_stop="115867" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="207" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="576" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114902" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="621" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E392677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116010" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTA</genome_strand>
        <mrna_strand>CCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAAAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAAAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213970" ref_strand="+" ref_description="SGN-E213970 [cLEC-80-I10]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatatggacagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="114603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114903" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="619" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E213970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGT</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238017" ref_strand="+" ref_description="SGN-E238017 [cLED-18-D14]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggatacccatggaggaaatatggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114906" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="616" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAA</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCCATGGAGGAAATATGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231149" ref_strand="+" ref_description="SGN-E231149 [cLED-5-K19]">
      <seq>ttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttcttttatagtgaaagatggataccagtggaggaaatttggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116235" stop="114606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115935" g_stop="115867" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="132" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="501" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114906" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="542" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E231149" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115935" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAA</genome_strand>
        <mrna_strand>TTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTTTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATTTGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235568" ref_strand="+" ref_description="SGN-E235568 [cLED-11-H8]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggaggaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="114614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114914" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="608" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGGAAATAT</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGGAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236170" ref_strand="+" ref_description="SGN-E236170 [cLED-20-C15]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggataccagtggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="114620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114920" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="602" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E236170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCAGTGGAGG</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCAGTGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237876" ref_strand="+" ref_description="SGN-E237876 [cLED-18-H8]">
      <seq>tctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116290" stop="114627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115990" g_stop="115867" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115782" g_stop="115726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="181" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="550" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114946" g_stop="114927" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="570" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E237876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115990" e_stop="115867"/>
          <exon e_start="115782" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="114946" e_stop="114927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGTTCGAAAAACATCTCTTCCCCTTTTGTGATCAATTATAACTTTCTACATACACGTATTTAATACCATAAGATTAAATCACTTTTTAGTGCATTTTACAACTTTTTTTTAAATCAAAAATAAAACAGACAAATTAAAAGGGAATTTTTTTTTCATCACGAGATATATATAAATCATATATGTAACGGTAAGAGTATGTATGTGTAATTTTTATAACGAGGATATGTTAATGTTGTTGCAGATAGTGAAAGATGGATACCA</genome_strand>
        <mrna_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA....................................................................................GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT.......................................................................................................................................................................................................................................................................................................................ATAGTGAAAGATGGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231817" ref_strand="+" ref_description="SGN-E231817 [cLED-7-K9]">
      <seq>tctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataatcataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116290" stop="114952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115990" g_stop="115867" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115782" g_stop="115726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="181" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="550" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115257" i_stop="115190" i_length="68">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115189" g_stop="115185" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="555" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E231817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115990" e_stop="115867"/>
          <exon e_start="115782" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
          <exon e_start="115189" e_stop="115185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTTGTAAGTTACCCAAATACTCTCCTCCGTTTCAATTTATTCATCTTACTTTTTCTTTTTTAATTTTATAGCTCGT</genome_strand>
        <mrna_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA....................................................................................GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATCATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT....................................................................ATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243852" ref_strand="+" ref_description="SGN-E243852 [cLED-35-K3]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="114950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E243852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243416" ref_strand="+" ref_description="SGN-E243416 [cLED-34-M5]">
      <seq>ccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacagtaataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116305" stop="114956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116005" g_stop="115867" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="571" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E243416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116005" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAGTAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210037" ref_strand="+" ref_description="SGN-E210037 [cLEC-40-C17]">
      <seq>ccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116305" stop="114958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116005" g_stop="115867" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="571" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E210037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116005" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206455" ref_strand="+" ref_description="SGN-E206455 [cLEC-23-E12]">
      <seq>ttctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcagaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116293" stop="114950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115993" g_stop="115867" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="190" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115258" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="559" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E206455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115993" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>TTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAGAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232710" ref_strand="+" ref_description="SGN-E232710 [cLED-8-C15]">
      <seq>ggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgatacttctcttatagtgaaagatggatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="115816" stop="114950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115516" g_stop="115258" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E232710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115516" e_stop="115258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</genome_strand>
        <mrna_strand>GGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230984" ref_strand="+" ref_description="SGN-E230984 [cLED-5-O3]">
      <seq>agttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcatcggacttggaagagatctggtacctgtaaaagatgaggcacgtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggcgatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagctgaatagtacgtctagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaatagtaataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacatttaaactaagacttcaagagtttatatgagaactgaaccatctgatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116237" stop="114963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115937" g_stop="115867" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="134" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115263" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="498" r_length="364" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E230984" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115937" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTT</genome_strand>
        <mrna_strand>AGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATCGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCACGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGCGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCTGAATAGTACGTCTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAGTAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTTAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235481" ref_strand="+" ref_description="SGN-E235481 [cLED-11-C12]">
      <seq>ccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagatgaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116305" stop="114966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116005" g_stop="115867" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115266" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="563" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116005" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATA</genome_strand>
        <mrna_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGATGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237907" ref_strand="+" ref_description="SGN-E237907 [cLED-18-C13]">
      <seq>ccaattttctataacacagaacttaatcaattttgaagaacaaagatcaaagcataatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcaagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116297" stop="114967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115997" g_stop="115867" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="194" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115267" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="555" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E237907" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115997" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGC-AGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGAT</genome_strand>
        <mrna_strand>CCAATTTTCTATAACACAGAACTTAATCAATTTTGAAGAACAAAGATCAAAGCATAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265888" ref_strand="+" ref_description="SGN-E265888 [cLEI-11-B18]">
      <seq>aattttccaattctctataacaaaaattttaatcagggttgaagaacaggggtcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgcccgaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacactaataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctactaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaactgaaccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116303" stop="114969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116003" g_stop="115867" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="200" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115269" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="558" r_length="358" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E265888" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116003" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTG</genome_strand>
        <mrna_strand>AATTTTCCAATTCTCTATAACAAAAATTTTAATCAGGGTTGAAGAACAGGGGTCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCCGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACACTAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACTAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241066" ref_strand="+" ref_description="SGN-E241066 [cLED-26-M11]">
      <seq>tctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttatatgagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116290" stop="114979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115990" g_stop="115867" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115782" g_stop="115726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="181" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115279" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="529" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E241066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115990" e_stop="115867"/>
          <exon e_start="115782" e_stop="115726"/>
          <exon e_start="115626" e_stop="115279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACT</genome_strand>
        <mrna_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA....................................................................................GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235872" ref_strand="+" ref_description="SGN-E235872 [cLED-16-C23]">
      <seq>tctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaagacttcaagagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116290" stop="114988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115990" g_stop="115867" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115782" g_stop="115726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="181" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115288" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="520" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E235872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115990" e_stop="115867"/>
          <exon e_start="115782" e_stop="115726"/>
          <exon e_start="115626" e_stop="115288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTAT</genome_strand>
        <mrna_strand>TCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA....................................................................................GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236182" ref_strand="+" ref_description="SGN-E236182 [cLED-20-I15]">
      <seq>cccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaactaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116306" stop="115003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116006" g_stop="115867" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="203" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115303" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="527" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E236182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116006" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAG</genome_strand>
        <mrna_strand>CCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207120" ref_strand="+" ref_description="SGN-E207120 [cLEC-30-E7]">
      <seq>cccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacacattaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116310" stop="115005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116010" g_stop="115867" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="207" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115305" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="529" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E207120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116010" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTA</genome_strand>
        <mrna_strand>CCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233306" ref_strand="+" ref_description="SGN-E233306 [cLED-9-A1]">
      <seq>tcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataattatgaaattgtgaaatcgtcagttcaagtgtttaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116311" stop="115014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116011" g_stop="115867" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="208" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115314" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="521" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E233306" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116011" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACA</genome_strand>
        <mrna_strand>TCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATTATGAAATTGTGAAATCGTCAGTTCAAGTGTTTAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240633" ref_strand="+" ref_description="SGN-E240633 [cLED-21-H16]">
      <seq>tcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgtttaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116311" stop="115015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116011" g_stop="115867" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="208" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115315" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="520" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240633" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116011" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACAC</genome_strand>
        <mrna_strand>TCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTTAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211160" ref_strand="+" ref_description="SGN-E211160 [cLEC-70-G4]">
      <seq>tcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattcatctacaaagaaaccaagagaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116251" stop="115018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115951" g_stop="115867" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115318" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="457" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E211160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115951" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAA</genome_strand>
        <mrna_strand>TCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208376" ref_strand="+" ref_description="SGN-E208376 [cLEC-37-K20]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaaganatctcgtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacgggatatatgagcaggcagaatagtagtacgtagtggagctagatcaggatcagaacagcgatggatcgaagaaaattaaaattggaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgtgggattcaaagagcagctcaagtgatgaagattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="115040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115340" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="495" r_length="289" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E208376" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTAC-TAGTGGAGCT-GATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATC</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGANATCTCGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGGATATATGAGCAGGCAGAATAGTAGTACGTAGTGGAGCTAGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGGAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTGGGATTCAAAGAGCAGCTCAAGTGATGAAGATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240619" ref_strand="+" ref_description="SGN-E240619 [cLED-21-B14]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="115042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115867" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="214" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115342" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="499" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240698" ref_strand="+" ref_description="SGN-E240698 [cLED-21-F22]">
      <seq>ccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116305" stop="115042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116005" g_stop="115867" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115342" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="487" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116005" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</genome_strand>
        <mrna_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236311" ref_strand="+" ref_description="SGN-E236311 [cLED-20-H19]">
      <seq>caaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaaaaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaattcagagagcagctcaagtgatgaagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116245" stop="115042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115945" g_stop="115867" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="142" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115342" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="427" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E236311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115945" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</genome_strand>
        <mrna_strand>CAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAAAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237938" ref_strand="+" ref_description="SGN-E237938 [cLED-18-E24]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgataacaacagcaataattataataattatgaaattgtgaaatcgtcagttcaagtgttgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="115070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115370" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="463" r_length="257" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E237938" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTC</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGATAACAACAGCAATAATTATAATAATTATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243695" ref_strand="+" ref_description="SGN-E243695 [cLED-35-E11]">
      <seq>ccccccaattttccaattctctataacaaaaagtgtaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgangaaccaattgacggaatatatgaacaagcagaatagtantactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaccaataataataataataatgaaattgtgaaatcgtcagttcaagtgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="115073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115373" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="460" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E243695" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAA</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAAGTGTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGANGAACCAATTGACGGAATATATGAACAAGCAGAATAGTANTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACACCAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240381" ref_strand="+" ref_description="SGN-E240381 [cLED-25-B21]">
      <seq>ccaattctctataacaaaaattttaatcaattttgaagaacacaaatcaacgcctaatggcgttcacaagattagatgatactcctctggatttgaactttacacctcttctagtttccgatgaattaccaaaacaggaagttgagagtaatttcatatgacttggaagagatctggtacctgttaaagatgatgcaagcaatttaatataggaactaaatagagtaaatgctgaaaataagaaattgacggagatgataacagttatgtgccagaattacaattcattgacgaaccaattgacggaatatatgagcaagcagaatagttgtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaatattgacaacaacaacaataatactaataataatgaacttgtgaaatcgtcagttcaagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116297" stop="115076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115997" g_stop="115867" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="194" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115376" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="445" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240381" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115997" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTT</genome_strand>
        <mrna_strand>CCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACACAAATCAACGCCTAATGGCGTTCACAAGATTAGATGATACTCCTCTGGATTTGAACTTTACACCTCTTCTAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATATGACTTGGAAGAGATCTGGTACCTGTTAAAGATGAT...................................................................................................GCAAGCAATTTAATATAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGATAACAGTTATGTGCCAGAATTACAATTCATTGACGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTTGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAATATTGACAACAACAACAATAATACTAATAATAATGAACTTGTGAAATCGTCAGTTCAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238055" ref_strand="+" ref_description="SGN-E238055 [cLED-22-C15]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagtatgtggaaagcgatataattttttttttgttctcaatataattattttgatgtgatgatttgatttttcgttgcagaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcgtcagttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="115081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115726" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115381" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="538" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115726"/>
          <exon e_start="115626" e_stop="115381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAA</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390778" ref_strand="+" ref_description="SGN-E390778 [TUS-44-A13]">
      <seq>gagcttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaggggggggggcagtaatactaccaataatgaaattgtgaaatcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116320" stop="115088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116021" g_stop="115867" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="218" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115388" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="458" r_length="240" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E390778" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116021" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGA-AAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTC</genome_strand>
        <mrna_strand>GAGCTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAGGGGGGGGGGCAGTAATACTACCAATAATGAAATTGTGAAATCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231332" ref_strand="+" ref_description="SGN-E231332 [cLED-10-L13]">
      <seq>ttcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaattgtgaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116312" stop="115090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116012" g_stop="115867" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="209" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115390" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="446" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E231332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116012" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCG</genome_strand>
        <mrna_strand>TTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236113" ref_strand="+" ref_description="SGN-E236113 [cLED-16-O7]">
      <seq>caattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacatcaatattaataataataatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116304" stop="115099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116004" g_stop="115867" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115782" g_stop="115726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="195" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115399" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="423" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E236113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116004" e_stop="115867"/>
          <exon e_start="115782" e_stop="115726"/>
          <exon e_start="115626" e_stop="115399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATT</genome_strand>
        <mrna_strand>CAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA....................................................................................GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACATCAATATTAATAATAATAATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202511" ref_strand="+" ref_description="SGN-E202511 [cLEC-6-H5]">
      <seq>ttttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaacaacaacaataataataataataatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116301" stop="115101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116001" g_stop="115867" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="198" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115401" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="424" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E202511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116001" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAA</genome_strand>
        <mrna_strand>TTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240843" ref_strand="+" ref_description="SGN-E240843 [cLED-24-D12]">
      <seq>ccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116305" stop="115130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116005" g_stop="115867" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115430" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="399" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116005" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAA</genome_strand>
        <mrna_strand>CCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227146" ref_strand="+" ref_description="SGN-E227146 [cLED-1-P14]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="115132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115867" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="214" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115432" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="409" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E227146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAA</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239497" ref_strand="+" ref_description="SGN-E239497 [cLED-23-F6]">
      <seq>cccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116308" stop="115136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116008" g_stop="115867" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="205" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115436" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="396" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E239497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116008" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAAT</genome_strand>
        <mrna_strand>CCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240617" ref_strand="+" ref_description="SGN-E240617 [cLED-21-B10]">
      <seq>tcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116316" stop="115137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116016" g_stop="115867" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="213" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115437" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="403" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116016" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAA</genome_strand>
        <mrna_strand>TCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208378" ref_strand="+" ref_description="SGN-E208378 [cLEC-37-K24]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="115137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115437" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="396" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E208378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAA</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208307" ref_strand="+" ref_description="SGN-E208307 [cLEC-37-P20]">
      <seq>ccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcacgtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116309" stop="115141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116009" g_stop="115867" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115441" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="392" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E208307" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116009" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATT</genome_strand>
        <mrna_strand>CCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCACGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241969" ref_strand="+" ref_description="SGN-E241969 [cLED-27-M13]">
      <seq>ccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgagcaagcagaatagtagtactagtggagctgatcaggatcagaacagcgatggatcgaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116297" stop="115143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115997" g_stop="115867" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="194" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115443" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="378" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E241969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115997" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAA</genome_strand>
        <mrna_strand>CCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238107" ref_strand="+" ref_description="SGN-E238107 [cLED-22-I24]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagtatgtggaaagcgatataattttttttttgttctcaatataattattttgatgtgatgatttgatttttcgttgcagaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgccagaattacaattcattgaggaaccaattgacggaatatatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="115205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115726" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115505" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E238107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115726"/>
          <exon e_start="115626" e_stop="115505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAG</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233633" ref_strand="+" ref_description="SGN-E233633 [cLED-14-M23]">
      <seq>ttcaattcccccccaattttccaattctctataacaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccagtatgtggaaagcgatataattttttttttgttctcaatataattattttgatgtgatgatttgatttttcgttgcagaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaattgacggagatgttaacagttatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116317" stop="115249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116017" g_stop="115726" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115626" g_stop="115549" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="370" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E233633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116017" e_stop="115726"/>
          <exon e_start="115626" e_stop="115549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGC</genome_strand>
        <mrna_strand>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240482" ref_strand="+" ref_description="SGN-E240482 [cLED-21-F15]">
      <seq>agcttcaattcccccccaattttccaattctctnccgcaaaaattttaatcaattttgaagaacaaaaatcaaagcaaaatggagttcacaagtttagttgatacttctctggatttgaactttagacctcttcgagtttccgatgaattaccaaaacaggaagttgagagtaatttcataggacttggaagagatctggtacctgtaaaagatgaggcaagtaatttaatagaggaactaaatagagtaaatgctgaaaataagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0157P11-OchTs/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0157P11.1" temp_strand="-" temp_description="C03HBa0157P11.1  AC238454.1 htgs_phase:2 submitted_to_sgn_as:gi|260903626|gb|AC238454.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0157p11, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116320" stop="115274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116020" g_stop="115867" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115788" g_stop="115726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="217" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115626" g_stop="115574" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0157P11.1" gen_strand="-" ref_id="SGN-E240482" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0157P11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116020" e_stop="115867"/>
          <exon e_start="115788" e_stop="115726"/>
          <exon e_start="115626" e_stop="115574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAGGTTGGTAAAATCTTCATCTTCTCCGATTTGTGTTCGTTGATAACAATGTCAGATCCAGAATTTGAAGTTTATACGATTGTATTGTGTTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATT</genome_strand>
        <mrna_strand>AGCTTCAATTCCCCCCCAATTTTCCAATTCTCTNCCGCAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA..............................................................................AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG...................................................................................................GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>217</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2300" PGL_stop="100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2300" e_stop="1724"/>
            <exon e_start="1637" e_stop="1497"/>
            <exon e_start="1412" e_stop="1272"/>
            <exon e_start="478" e_stop="372"/>
            <exon e_start="285" e_stop="100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2300" e_stop="1724" e_length="577"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1723" i_stop="1638" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1637" e_stop="1497" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="1496" i_stop="1413" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1412" e_stop="1272" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.976">
            <gDNA_intron_boundary i_start="1271" i_stop="479" i_length="793"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="478" e_stop="372" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="371" i_stop="286" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="285" e_stop="100" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2300" stop="1724"/>
              <exon start="1637" stop="1518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2298" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2298" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2297" stop="1724"/>
              <exon start="1637" stop="1556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2297" stop="1724"/>
              <exon start="1637" stop="1587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2286" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2207" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2172" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1902" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280898" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1895" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1842" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1272"/>
              <exon start="478" stop="372"/>
              <exon start="285" stop="100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1842" stop="1724"/>
              <exon start="1637" stop="1497"/>
              <exon start="1412" stop="1374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAATGGCCCTCTTATCACCACCGCCCTCTAAGTCCAAGCCTTACCCATTTTCGCCGCTTCCCCGAGCAGTTCATAGACAGGGGAGAAGCACTCAAACAACGAAAAATGTAAATTCCTTGTCTTGTACTTCAATGACAACAAAAATTGGCGTTGTTAACAAGTGGAATTGTTATGGACTGGAAGGAAAAGTTAGATTTAGCAGAAGAGTAATGCTAATGCCAATCGTGAATGCAGCAGTGACGCAGCCTGTATCAGAAAATGAAAGAGAATCGAACTTTAAGAGGATTCTTCTTTCTGATGTAGTCGTGACCCGGCCTAGGGATGTGCTTTGGGGAAGGAAATGGAATTCAATGGATATGGCCTCAGCTGCGGTGGTGGTGTCTATGCATTTGCTCTGTCTATTTGCACCCTTTACTTTCAATTACGCTGCTCTTGGGATTGCATTTGGGTTATATGTAATCACTGGACTTCTCGGTATTACACTTTCTTTTCACAGAAACCTCTCTCATAGAAGTTTCAAACTTCCCAAATGGCTTGAATACTTTTTTGCCTATTGTGGTGTCCAAGCACTTCAG : GGACATCCAATTGATTGGGTGAGTACTCATAGGTACCACCATCAGTTTTGTGATTCAGAGAAAGACCCTCACAGTCCTTATGAAGGATTTTGGTTCAGTCATATGAGTTGGATGTTTGATACCAACACCCTTACTGAGAGG : TGTGGGAAGCCCAATAATGTGGGGGATTTGGAGAAGCAAGGTTTCTATCAATTCATTCGTGATACTTATGTGATCCATCCAGTCGCCCTTGGAGCTCTGTTGTATGCAATGGGAGGATTCCCTTACATTGTTTGGGGCATG : GGGGTGAGAATTGTGTGGGTATACCACATAACTTGGCTAGTAAATTCAGCATGCCATGTATGGGGAAAGCAGGCGTGGAATACTGGTGACTTATCAAGGAACAACTG : GTGGGTGGCATTGCTTGCATTTGGAGAAGGTTGGCACAACAACCACCACGCGTTTGAGTATTCAGCCAGGCATGGATTAAAATGGTGGCAACTTGACATGACTTGGTATGTAGTACGATTTCTTCAAGCTATTGGATTGGCCACTGATGTCAAGTTACCAACTGATACTCATAAACAGAGGCTGGC</gDNA_template>
            <first_frame> N  N  G  P  L  I  T  T  A  L  *  V  Q  A  L  P  I  F  A  A  S  P  S  S  S  *  T  G  E  K  H  S  N  N  E  K  C  K  F  L  V  L  Y  F  N  D  N  K  N  W  R  C  *  Q  V  E  L  L  W  T  G  R  K  S  *  I  *  Q  K  S  N  A  N  A  N  R  E  C  S  S  D  A  A  C  I  R  K  *  K  R  I  E  L  *  E  D  S  S  F  *  C  S  R  D  P  A  *  G  C  A  L  G  K  E  M  E  F  N  G  Y  G  L  S  C  G  G  G  V  Y  A  F  A  L  S  I  C  T  L  Y  F  Q  L  R  C  S  W  D  C  I  W  V  I  C  N  H  W  T  S  R  Y  Y  T  F  F  S  Q  K  P  L  S  *  K  F  Q  T  S  Q  M  A  *  I  L  F  C  L  L  W  C  P  S  T  S   : G  T  S  N  *  L  G  E  Y  S  *  V  P  P  S  V  L  *  F  R  E  R  P  S  Q  S  L  *  R  I  L  V  Q  S  Y  E  L  D  V  *  Y  Q  H  P  Y  *  E   : V  W  E  A  Q  *  C  G  G  F  G  E  A  R  F  L  S  I  H  S  *  Y  L  C  D  P  S  S  R  P  W  S  S  V  V  C  N  G  R  I  P  L  H  C  L  G  H   : G  G  E  N  C  V  G  I  P  H  N  L  A  S  K  F  S  M  P  C  M  G  K  A  G  V  E  Y  W  *  L  I  K  E  Q  L  :  V  G  G  I  A  C  I  W  R  R  L  A  Q  Q  P  P  R  V  *  V  F  S  Q  A  W  I  K  M  V  A  T  *  H  D  L  V  C  S  T  I  S  S  S  Y  W  I  G  H  *  C  Q  V  T  N  *  Y  S  *  T  E  A  G </first_frame>
            <second_frame>  T  M  A  L  L  S  P  P  P  S  K  S  K  P  Y  P  F  S  P  L  P  R  A  V  H  R  Q  G  R  S  T  Q  T  T  K  N  V  N  S  L  S  C  T  S  M  T  T  K  I  G  V  V  N  K  W  N  C  Y  G  L  E  G  K  V  R  F  S  R  R  V  M  L  M  P  I  V  N  A  A  V  T  Q  P  V  S  E  N  E  R  E  S  N  F  K  R  I  L  L  S  D  V  V  V  T  R  P  R  D  V  L  W  G  R  K  W  N  S  M  D  M  A  S  A  A  V  V  V  S  M  H  L  L  C  L  F  A  P  F  T  F  N  Y  A  A  L  G  I  A  F  G  L  Y  V  I  T  G  L  L  G  I  T  L  S  F  H  R  N  L  S  H  R  S  F  K  L  P  K  W  L  E  Y  F  F  A  Y  C  G  V  Q  A  L  Q  :  G  H  P  I  D  W  V  S  T  H  R  Y  H  H  Q  F  C  D  S  E  K  D  P  H  S  P  Y  E  G  F  W  F  S  H  M  S  W  M  F  D  T  N  T  L  T  E  R  :  C  G  K  P  N  N  V  G  D  L  E  K  Q  G  F  Y  Q  F  I  R  D  T  Y  V  I  H  P  V  A  L  G  A  L  L  Y  A  M  G  G  F  P  Y  I  V  W  G  M  :  G  V  R  I  V  W  V  Y  H  I  T  W  L  V  N  S  A  C  H  V  W  G  K  Q  A  W  N  T  G  D  L  S  R  N  N  W :   W  V  A  L  L  A  F  G  E  G  W  H  N  N  H  H  A  F  E  Y  S  A  R  H  G  L  K  W  W  Q  L  D  M  T  W  Y  V  V  R  F  L  Q  A  I  G  L  A  T  D  V  K  L  P  T  D  T  H  K  Q  R  L   </second_frame>
            <third_frame>   Q  W  P  S  Y  H  H  R  P  L  S  P  S  L  T  H  F  R  R  F  P  E  Q  F  I  D  R  G  E  A  L  K  Q  R  K  M  *  I  P  C  L  V  L  Q  *  Q  Q  K  L  A  L  L  T  S  G  I  V  M  D  W  K  E  K  L  D  L  A  E  E  *  C  *  C  Q  S  *  M  Q  Q  *  R  S  L  Y  Q  K  M  K  E  N  R  T  L  R  G  F  F  F  L  M  *  S  *  P  G  L  G  M  C  F  G  E  G  N  G  I  Q  W  I  W  P  Q  L  R  W  W  C  L  C  I  C  S  V  Y  L  H  P  L  L  S  I  T  L  L  L  G  L  H  L  G  Y  M  *  S  L  D  F  S  V  L  H  F  L  F  T  E  T  S  L  I  E  V  S  N  F  P  N  G  L  N  T  F  L  P  I  V  V  S  K  H  F  R :   D  I  Q  L  I  G  *  V  L  I  G  T  T  I  S  F  V  I  Q  R  K  T  L  T  V  L  M  K  D  F  G  S  V  I  *  V  G  C  L  I  P  T  P  L  L  R  G :   V  G  S  P  I  M  W  G  I  W  R  S  K  V  S  I  N  S  F  V  I  L  M  *  S  I  Q  S  P  L  E  L  C  C  M  Q  W  E  D  S  L  T  L  F  G  A  W :   G  *  E  L  C  G  Y  T  T  *  L  G  *  *  I  Q  H  A  M  Y  G  E  S  R  R  G  I  L  V  T  Y  Q  G  T  T   : G  G  W  H  C  L  H  L  E  K  V  G  T  T  T  T  T  R  L  S  I  Q  P  G  M  D  *  N  G  G  N  L  T  *  L  G  M  *  Y  D  F  F  K  L  L  D  W  P  L  M  S  S  Y  Q  L  I  L  I  N  R  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2299" stop="1724"/>
                    <exon start="1637" stop="1497"/>
                    <exon start="1412" stop="1272"/>
                    <exon start="478" stop="372"/>
                    <exon start="285" stop="102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMALLSPPPSKSKPYPFSPLPRAVHRQGRSTQTTKNVNSLSCTSMTTKIGVVNKWNCYGLEGKVRFSRRVMLMPIVNAAVTQPVSENERESNFKRILLSDVVVTRPRDVLWGRKWNSMDMASAAVVVSMHLLCLFAPFTFNYAALGIAFGLYVITGLLGITLSFHRNLSHRSFKLPKWLEYFFAYCGVQALQGHPIDWVSTHRYHHQFCDSEKDPHSPYEGFWFSHMSWMFDTNTLTERCGKPNNVGDLEKQGFYQFIRDTYVIHPVALGALLYAMGGFPYIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLKWWQLDMTWYVVRFLQAIGLATDVKLPTDTHKQRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10247" PGL_stop="7908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10247" e_stop="10045"/>
            <exon e_start="9905" e_stop="9768"/>
            <exon e_start="8443" e_stop="7908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.107" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10247" e_stop="10045" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.107" acc_prob="0.955">
            <gDNA_intron_boundary i_start="10044" i_stop="9906" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9905" e_stop="9768" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9767" i_stop="8444" i_length="1324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="7908" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10247" stop="10045"/>
              <exon start="9905" stop="9768"/>
              <exon start="8443" stop="7923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10057" stop="10045"/>
              <exon start="9905" stop="9768"/>
              <exon start="8443" stop="7908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578218" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTATTCGGTGTAGTGAAGTACCATCCAATACCGTGTATCTTCGCTGCTTCACTGTTGTTTTTCATGGGAGTGGAATATACGCTTCATATGATTCCAGCTTCTGCTCCGCCTTTCGATCTCGGATTTATTGTTACAGTTCCTCTTAATCGATTGCTTGCTGCTAAACCCGCTCTCAACACTCTCTTTGCTGGCCTAAACACG : GTGTTTGTGGCGATGCAAACGGCGTACATTTTGGGGACTTTTCTAATTGAAGGACGGCCTCGAGCGACAATATCGGCGCTGTTTATGTTCACATTCAGAGGGATTCTCGGGTATGCTACACAATTGCCGTTGCCGGAG : GATTTCTTGGGGTCAGGGGTGGATTTCCCAGTAGGGAATGTGTCGTTTTTCTTGTTTTATTCAGGGCATGTTGCGGCCTCGGTGATTGCTTCGCTGGATATGAAACGTATGCAGAGATGGGAAATGGCTAGAGTATTTGACGCATTGAATGTATTGCAAGTTGTGAGGTTACTAAGCACTAGGGGCCATTACACTATTGATTTGGCTGTTGGTATTGGCGCTGGCATTTTGTTTGATTCTATGGCAGGAAACTATGTGGAGACTAGGACAAAACTATCTGCCACTAATGGTATTGGTGTGGAATACTCTCCTAAGCATGAAAACGGAGTGAAATACCAAAGTGTATCTTCAGATTAAAATGTATCCACTCAAATGTGTGATGGTGGATTTTAGGTCGAAATGTAAAGATAAGTTTGGGTTGGTCCAATTGTAGGGTCTTTATCTTAGTGCACTTCTGTTCCAATTTAGGTACTTTGTAAACTGCAACTGCAGCTTCCCACTCACCCCACCAAACTCACCATGCTTTTAATTTTAAT</gDNA_template>
            <first_frame> M  Y  S  V  *  *  S  T  I  Q  Y  R  V  S  S  L  L  H  C  C  F  S  W  E  W  N  I  R  F  I  *  F  Q  L  L  L  R  L  S  I  S  D  L  L  L  Q  F  L  L  I  D  C  L  L  L  N  P  L  S  T  L  S  L  L  A  *  T  R :   C  L  W  R  C  K  R  R  T  F  W  G  L  F  *  L  K  D  G  L  E  R  Q  Y  R  R  C  L  C  S  H  S  E  G  F  S  G  M  L  H  N  C  R  C  R  R :   I  S  W  G  Q  G  W  I  S  Q  *  G  M  C  R  F  S  C  F  I  Q  G  M  L  R  P  R  *  L  L  R  W  I  *  N  V  C  R  D  G  K  W  L  E  Y  L  T  H  *  M  Y  C  K  L  *  G  Y  *  A  L  G  A  I  T  L  L  I  W  L  L  V  L  A  L  A  F  C  L  I  L  W  Q  E  T  M  W  R  L  G  Q  N  Y  L  P  L  M  V  L  V  W  N  T  L  L  S  M  K  T  E  *  N  T  K  V  Y  L  Q  I  K  M  Y  P  L  K  C  V  M  V  D  F  R  S  K  C  K  D  K  F  G  L  V  Q  L  *  G  L  Y  L  S  A  L  L  F  Q  F  R  Y  F  V  N  C  N  C  S  F  P  L  T  P  P  N  S  P  C  F  *  F  *  </first_frame>
            <second_frame>  C  I  R  C  S  E  V  P  S  N  T  V  Y  L  R  C  F  T  V  V  F  H  G  S  G  I  Y  A  S  Y  D  S  S  F  C  S  A  F  R  S  R  I  Y  C  Y  S  S  S  *  S  I  A  C  C  *  T  R  S  Q  H  S  L  C  W  P  K  H   : G  V  C  G  D  A  N  G  V  H  F  G  D  F  S  N  *  R  T  A  S  S  D  N  I  G  A  V  Y  V  H  I  Q  R  D  S  R  V  C  Y  T  I  A  V  A  G   : G  F  L  G  V  R  G  G  F  P  S  R  E  C  V  V  F  L  V  L  F  R  A  C  C  G  L  G  D  C  F  A  G  Y  E  T  Y  A  E  M  G  N  G  *  S  I  *  R  I  E  C  I  A  S  C  E  V  T  K  H  *  G  P  L  H  Y  *  F  G  C  W  Y  W  R  W  H  F  V  *  F  Y  G  R  K  L  C  G  D  *  D  K  T  I  C  H  *  W  Y  W  C  G  I  L  S  *  A  *  K  R  S  E  I  P  K  C  I  F  R  L  K  C  I  H  S  N  V  *  W  W  I  L  G  R  N  V  K  I  S  L  G  W  S  N  C  R  V  F  I  L  V  H  F  C  S  N  L  G  T  L  *  T  A  T  A  A  S  H  S  P  H  Q  T  H  H  A  F  N  F  N </second_frame>
            <third_frame>   V  F  G  V  V  K  Y  H  P  I  P  C  I  F  A  A  S  L  L  F  F  M  G  V  E  Y  T  L  H  M  I  P  A  S  A  P  P  F  D  L  G  F  I  V  T  V  P  L  N  R  L  L  A  A  K  P  A  L  N  T  L  F  A  G  L  N  T  :  V  F  V  A  M  Q  T  A  Y  I  L  G  T  F  L  I  E  G  R  P  R  A  T  I  S  A  L  F  M  F  T  F  R  G  I  L  G  Y  A  T  Q  L  P  L  P  E  :  D  F  L  G  S  G  V  D  F  P  V  G  N  V  S  F  F  L  F  Y  S  G  H  V  A  A  S  V  I  A  S  L  D  M  K  R  M  Q  R  W  E  M  A  R  V  F  D  A  L  N  V  L  Q  V  V  R  L  L  S  T  R  G  H  Y  T  I  D  L  A  V  G  I  G  A  G  I  L  F  D  S  M  A  G  N  Y  V  E  T  R  T  K  L  S  A  T  N  G  I  G  V  E  Y  S  P  K  H  E  N  G  V  K  Y  Q  S  V  S  S  D  *  N  V  S  T  Q  M  C  D  G  G  F  *  V  E  M  *  R  *  V  W  V  G  P  I  V  G  S  L  S  *  C  T  S  V  P  I  *  V  L  C  K  L  Q  L  Q  L  P  T  H  P  T  K  L  T  M  L  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10245" stop="10045"/>
                    <exon start="9905" stop="9768"/>
                    <exon start="8443" stop="8087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFGVVKYHPIPCIFAASLLFFMGVEYTLHMIPASAPPFDLGFIVTVPLNRLLAAKPALNTLFAGLNTVFVAMQTAYILGTFLIEGRPRATISALFMFTFRGILGYATQLPLPEDFLGSGVDFPVGNVSFFLFYSGHVAASVIASLDMKRMQRWEMARVFDALNVLQVVRLLSTRGHYTIDLAVGIGAGILFDSMAGNYVETRTKLSATNGIGVEYSPKHENGVKYQSVSSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15745" PGL_stop="12879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15745" e_stop="15669"/>
            <exon e_start="15537" e_stop="15358"/>
            <exon e_start="15254" e_stop="15126"/>
            <exon e_start="15024" e_stop="14929"/>
            <exon e_start="14149" e_stop="13961"/>
            <exon e_start="13694" e_stop="13534"/>
            <exon e_start="13402" e_stop="12879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.422" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.551" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.430" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15745" e_stop="15669" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.422" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15537" e_stop="15358" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.789" acc_prob="0.823">
            <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15254" e_stop="15126" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15024" e_stop="14929" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14149" e_stop="13961" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.551">
            <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13694" e_stop="13534" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.430">
            <gDNA_intron_boundary i_start="13533" i_stop="13403" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13402" e_stop="12879" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15745" stop="15669"/>
              <exon start="15537" stop="15358"/>
              <exon start="15254" stop="15126"/>
              <exon start="15024" stop="14929"/>
              <exon start="14149" stop="14119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15023" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13534"/>
              <exon start="13402" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15022" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15006" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="14929"/>
              <exon start="14149" stop="13964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14047" stop="13961"/>
              <exon start="13694" stop="13534"/>
              <exon start="13402" stop="12889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13604" stop="13534"/>
              <exon start="13402" stop="12911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13602" stop="13534"/>
              <exon start="13402" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301576" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG : GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG : ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG : GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG : CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG : TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG : CTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</gDNA_template>
            <first_frame> Q  F  W  L  W  H  T  M  P  Y  T  N  S  G  S  G  N  G  T  R  G  T  *  Q  E  R :   H  L  L  L  S  P  L  N  Y  G  N  L  P  V  E  F  *  *  Q  M  I  *  A  T  Q  T  L  K  K  L  F  H  A  L  H  F  P  R  M  T  L  M  L  C  P  H  L  V  E  K  F  L  C  L  T  *  *  L  L  R :   P  *  Q  L  S  C  P  L  H  L  Q  Q  L  F  L  L  F  I  H  R  I  I  T  L  L  L  S  E  W  R  T  L  L  Y  K  Y  I  M  F  A  L  M  R :   *  K  A  N  S  K  V  I  R  R  E  *  L  A  W  L  S  L  A  F  *  M  F  W  Y  H  L  V  L  M  L  S :   Y  V  F  G  A  W  M  D  G  R  R  K  P  A  S  F  C  R  S  P  L  V  E  Q  *  I  L  L  L  R  H  G  F  S  S  I  K  I  R  R  I  C  W  L  F  M  K  H  R  *  Q  Y  M  K  H  Q  S  L  N  A  *  S  S :   G  F  H  Q  I  L  Q  L  L  M  R  R  I  R  V  I  A  N  Q  F  L  Q  V  L  M  M  E  V  *  V  S  L  P  L  Q  H  S  S  *  G  V  G  *  I  L  P  P  T  C  L  L  T  Q   : A  P  E  Y  I  H  L  S  L  L  L  I  H  L  N  Q  T  N  A  Q  *  D  L  L  M  A  E  F  M  C  L  S  L  *  S  R  K  V  N  G  A  H  H  L  Q  M  K  M  V  L  P  L  A  *  A  L  L  P  L  V  L  I  K  H  Q  G  S  G  S  G  L  S  D  A  N  A  P  V  L  Y  F  R  G  S  C  R  F  S  D  L  G  Y  N  L  L  T  S  V  I  R  S  G  S  V  S  C  G  S  *  D  G  M  E  D  Q  L  F  S  *  R  K  D  S  K  K  K  T  K  C  *  *  L  *  V  D  *  G  F  S  S  T  S  *  E  I  L  P  V  L  S  C  F  C  P  S  T  K  L  W  Q  C  N  Y  R  K  L  K  Q  A  S  *  F  Y  S  L </first_frame>
            <second_frame>  N  S  G  F  G  I  Q  C  R  T  Q  T  L  E  V  A  T  E  R  E  E  R  D  R  K   : G  I  Y  C  C  P  P  S  I  M  A  T  F  Q  W  N  S  D  D  K  *  Y  K  R  H  K  P  *  R  S  C  S  M  L  C  T  F  Q  E  *  L  L  C  Y  V  R  I  W  W  K  N  F  F  V  *  H  D  D  F  *   : D  H  D  N  F  H  A  P  S  T  C  S  N  F  S  C  F  S  S  T  G  *  *  H  Y  C  Y  R  N  G  G  L  F  Y  T  N  I  *  C  S  R  *  *   : G  E  K  Q  T  Q  R  S  S  E  E  S  N  W  L  G  F  L  *  R  F  E  C  S  G  I  I  W  C  *  C  S   : A  M  C  L  E  H  G  W  M  G  E  E  S  Q  Q  V  F  A  D  P  L  W  *  S  N  K  S  S  C  S  D  T  G  S  V  P  S  R  S  D  A  F  V  G  C  S  *  N  T  D  S  N  I  *  S  I  K  A  *  M  R  E  A   : V  G  F  T  K  F  C  S  Y  *  C  D  V  F  V  *  *  P  I  N  F  C  K  F  *  *  W  K  C  E  Y  L  Y  R  C  S  T  Q  A  E  V  S  G  E  S  C  R  L  L  A  F  *  P  K  :  L  Q  S  I  S  T  C  R  C  C  S  S  I  *  I  K  P  M  R  S  R  T  Y  *  W  R  S  L  C  A  *  A  S  R  V  G  R  *  M  G  H  T  T  S  K  *  K  W  C  C  P  W  H  E  L  C  C  H  W  S  *  S  S  I  K  V  A  A  V  V  S  L  M  Q  M  L  L  C  Y  I  F  G  G  A  V  D  F  Q  I  *  D  T  T  S  *  R  Q  *  *  E  V  A  V  S  P  V  E  A  E  T  V  W  K  I  S  Y  S  V  K  G  R  I  Q  R  K  R  Q  N  V  D  N  Y  R  *  I  R  D  S  V  Q  P  L  E  K  F  C  L  F  *  V  V  S  V  Q  A  L  N  Y  G  S  V  I  I  E  S  S  S  K  P  V  D  F  T  L   </second_frame>
            <third_frame>   I  L  A  L  A  Y  N  A  V  H  K  L  W  K  W  Q  R  N  E  R  N  V  T  G  K  :  A  S  T  A  V  P  P  Q  L  W  Q  P  S  S  G  I  L  M  T  N  D  I  S  D  T  N  P  E  E  A  V  P  C  F  A  L  S  K  N  D  S  Y  V  M  S  A  S  G  G  K  I  S  L  F  N  M  M  T  F  K  :  T  M  T  T  F  M  P  P  P  P  A  A  T  F  L  A  F  H  P  Q  D  N  N  I  I  A  I  G  M  E  D  S  S  I  Q  I  Y  N  V  R  V  D  E  :  V  K  S  K  L  K  G  H  Q  K  R  V  T  G  L  A  F  S  S  V  L  N  V  L  V  S  S  G  A  D  A  Q  :  L  C  V  W  S  M  D  G  W  E  K  K  A  S  K  F  L  Q  I  P  S  G  R  A  I  N  P  L  A  Q  T  R  V  Q  F  H  Q  D  Q  T  H  L  L  V  V  H  E  T  Q  I  A  I  Y  E  A  S  K  L  E  C  V  K  Q  :  W  V  S  P  N  F  A  V  T  D  A  T  Y  S  C  D  S  Q  S  I  F  A  S  F  D  D  G  S  V  S  I  F  T  A  A  A  L  K  L  R  C  R  V  N  P  A  A  Y  L  P  S  N  P  S :   S  R  V  Y  P  L  V  V  A  A  H  P  S  E  S  N  Q  C  A  V  G  L  T  D  G  G  V  Y  V  L  E  P  L  E  S  E  G  K  W  G  T  P  P  P  N  E  N  G  V  A  P  G  M  S  S  A  A  T  G  L  D  Q  A  S  R  *  R  Q  W  S  L  *  C  K  C  S  C  A  I  F  S  G  E  L  *  I  F  R  S  R  I  Q  P  L  D  V  S  D  K  K  W  Q  C  L  L  W  K  L  R  R  Y  G  R  S  V  I  Q  L  K  E  G  F  K  E  K  D  K  M  L  I  I  I  G  R  L  G  I  Q  F  N  L  L  R  N  F  A  C  F  K  L  F  L  S  K  H  *  T  M  A  V  *  L  S  K  A  Q  A  S  Q  L  I  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15743" stop="15669"/>
                    <exon start="15537" stop="15358"/>
                    <exon start="15254" stop="15126"/>
                    <exon start="15024" stop="14929"/>
                    <exon start="14149" stop="13961"/>
                    <exon start="13694" stop="13534"/>
                    <exon start="13402" stop="13204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILALAYNAVHKLWKWQRNERNVTGKASTAVPPQLWQPSSGILMTNDISDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSSVLNVLVSSGADAQLCVWSMDGWEKKASKFLQIPSGRAINPLAQTRVQFHQDQTHLLVVHETQIAIYEASKLECVKQWVSPNFAVTDATYSCDSQSIFASFDDGSVSIFTAAALKLRCRVNPAAYLPSNPSSRVYPLVVAAHPSESNQCAVGLTDGGVYVLEPLESEGKWGTPPPNENGVAPGMSSAATGLDQASR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13146" stop="12934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRSRIQPLDVSDKKWQCLLWKLRRYGRSVIQLKEGFKEKDKMLIIIGRLGIQFNLLRNFACFKLFLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15745" e_stop="15669"/>
            <exon e_start="15537" e_stop="15358"/>
            <exon e_start="15254" e_stop="15126"/>
            <exon e_start="15024" e_stop="14929"/>
            <exon e_start="14149" e_stop="13961"/>
            <exon e_start="13694" e_stop="13534"/>
            <exon e_start="13396" e_stop="12879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.422" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.551" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15745" e_stop="15669" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.422" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15537" e_stop="15358" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.789" acc_prob="0.823">
            <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15254" e_stop="15126" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15024" e_stop="14929" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14149" e_stop="13961" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.551">
            <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13694" e_stop="13534" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13533" i_stop="13397" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13396" e_stop="12879" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15745" stop="15669"/>
              <exon start="15537" stop="15358"/>
              <exon start="15254" stop="15126"/>
              <exon start="15024" stop="14929"/>
              <exon start="14149" stop="14119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15022" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15006" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="14929"/>
              <exon start="14149" stop="13964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14015" stop="13961"/>
              <exon start="13694" stop="13534"/>
              <exon start="13396" stop="13076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301576" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG : GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG : ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG : GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG : CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG : TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAG : AGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</gDNA_template>
            <first_frame> Q  F  W  L  W  H  T  M  P  Y  T  N  S  G  S  G  N  G  T  R  G  T  *  Q  E  R :   H  L  L  L  S  P  L  N  Y  G  N  L  P  V  E  F  *  *  Q  M  I  *  A  T  Q  T  L  K  K  L  F  H  A  L  H  F  P  R  M  T  L  M  L  C  P  H  L  V  E  K  F  L  C  L  T  *  *  L  L  R :   P  *  Q  L  S  C  P  L  H  L  Q  Q  L  F  L  L  F  I  H  R  I  I  T  L  L  L  S  E  W  R  T  L  L  Y  K  Y  I  M  F  A  L  M  R :   *  K  A  N  S  K  V  I  R  R  E  *  L  A  W  L  S  L  A  F  *  M  F  W  Y  H  L  V  L  M  L  S :   Y  V  F  G  A  W  M  D  G  R  R  K  P  A  S  F  C  R  S  P  L  V  E  Q  *  I  L  L  L  R  H  G  F  S  S  I  K  I  R  R  I  C  W  L  F  M  K  H  R  *  Q  Y  M  K  H  Q  S  L  N  A  *  S  S :   G  F  H  Q  I  L  Q  L  L  M  R  R  I  R  V  I  A  N  Q  F  L  Q  V  L  M  M  E  V  *  V  S  L  P  L  Q  H  S  S  *  G  V  G  *  I  L  P  P  T  C  L  L  T  Q   : E  Y  I  H  L  S  L  L  L  I  H  L  N  Q  T  N  A  Q  *  D  L  L  M  A  E  F  M  C  L  S  L  *  S  R  K  V  N  G  A  H  H  L  Q  M  K  M  V  L  P  L  A  *  A  L  L  P  L  V  L  I  K  H  Q  G  S  G  S  G  L  S  D  A  N  A  P  V  L  Y  F  R  G  S  C  R  F  S  D  L  G  Y  N  L  L  T  S  V  I  R  S  G  S  V  S  C  G  S  *  D  G  M  E  D  Q  L  F  S  *  R  K  D  S  K  K  K  T  K  C  *  *  L  *  V  D  *  G  F  S  S  T  S  *  E  I  L  P  V  L  S  C  F  C  P  S  T  K  L  W  Q  C  N  Y  R  K  L  K  Q  A  S  *  F  Y  S  L </first_frame>
            <second_frame>  N  S  G  F  G  I  Q  C  R  T  Q  T  L  E  V  A  T  E  R  E  E  R  D  R  K   : G  I  Y  C  C  P  P  S  I  M  A  T  F  Q  W  N  S  D  D  K  *  Y  K  R  H  K  P  *  R  S  C  S  M  L  C  T  F  Q  E  *  L  L  C  Y  V  R  I  W  W  K  N  F  F  V  *  H  D  D  F  *   : D  H  D  N  F  H  A  P  S  T  C  S  N  F  S  C  F  S  S  T  G  *  *  H  Y  C  Y  R  N  G  G  L  F  Y  T  N  I  *  C  S  R  *  *   : G  E  K  Q  T  Q  R  S  S  E  E  S  N  W  L  G  F  L  *  R  F  E  C  S  G  I  I  W  C  *  C  S   : A  M  C  L  E  H  G  W  M  G  E  E  S  Q  Q  V  F  A  D  P  L  W  *  S  N  K  S  S  C  S  D  T  G  S  V  P  S  R  S  D  A  F  V  G  C  S  *  N  T  D  S  N  I  *  S  I  K  A  *  M  R  E  A   : V  G  F  T  K  F  C  S  Y  *  C  D  V  F  V  *  *  P  I  N  F  C  K  F  *  *  W  K  C  E  Y  L  Y  R  C  S  T  Q  A  E  V  S  G  E  S  C  R  L  L  A  F  *  P  K  :  S  I  S  T  C  R  C  C  S  S  I  *  I  K  P  M  R  S  R  T  Y  *  W  R  S  L  C  A  *  A  S  R  V  G  R  *  M  G  H  T  T  S  K  *  K  W  C  C  P  W  H  E  L  C  C  H  W  S  *  S  S  I  K  V  A  A  V  V  S  L  M  Q  M  L  L  C  Y  I  F  G  G  A  V  D  F  Q  I  *  D  T  T  S  *  R  Q  *  *  E  V  A  V  S  P  V  E  A  E  T  V  W  K  I  S  Y  S  V  K  G  R  I  Q  R  K  R  Q  N  V  D  N  Y  R  *  I  R  D  S  V  Q  P  L  E  K  F  C  L  F  *  V  V  S  V  Q  A  L  N  Y  G  S  V  I  I  E  S  S  S  K  P  V  D  F  T  L   </second_frame>
            <third_frame>   I  L  A  L  A  Y  N  A  V  H  K  L  W  K  W  Q  R  N  E  R  N  V  T  G  K  :  A  S  T  A  V  P  P  Q  L  W  Q  P  S  S  G  I  L  M  T  N  D  I  S  D  T  N  P  E  E  A  V  P  C  F  A  L  S  K  N  D  S  Y  V  M  S  A  S  G  G  K  I  S  L  F  N  M  M  T  F  K  :  T  M  T  T  F  M  P  P  P  P  A  A  T  F  L  A  F  H  P  Q  D  N  N  I  I  A  I  G  M  E  D  S  S  I  Q  I  Y  N  V  R  V  D  E  :  V  K  S  K  L  K  G  H  Q  K  R  V  T  G  L  A  F  S  S  V  L  N  V  L  V  S  S  G  A  D  A  Q  :  L  C  V  W  S  M  D  G  W  E  K  K  A  S  K  F  L  Q  I  P  S  G  R  A  I  N  P  L  A  Q  T  R  V  Q  F  H  Q  D  Q  T  H  L  L  V  V  H  E  T  Q  I  A  I  Y  E  A  S  K  L  E  C  V  K  Q  :  W  V  S  P  N  F  A  V  T  D  A  T  Y  S  C  D  S  Q  S  I  F  A  S  F  D  D  G  S  V  S  I  F  T  A  A  A  L  K  L  R  C  R  V  N  P  A  A  Y  L  P  S  N  P  R :   V  Y  P  L  V  V  A  A  H  P  S  E  S  N  Q  C  A  V  G  L  T  D  G  G  V  Y  V  L  E  P  L  E  S  E  G  K  W  G  T  P  P  P  N  E  N  G  V  A  P  G  M  S  S  A  A  T  G  L  D  Q  A  S  R  *  R  Q  W  S  L  *  C  K  C  S  C  A  I  F  S  G  E  L  *  I  F  R  S  R  I  Q  P  L  D  V  S  D  K  K  W  Q  C  L  L  W  K  L  R  R  Y  G  R  S  V  I  Q  L  K  E  G  F  K  E  K  D  K  M  L  I  I  I  G  R  L  G  I  Q  F  N  L  L  R  N  F  A  C  F  K  L  F  L  S  K  H  *  T  M  A  V  *  L  S  K  A  Q  A  S  Q  L  I  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15743" stop="15669"/>
                    <exon start="15537" stop="15358"/>
                    <exon start="15254" stop="15126"/>
                    <exon start="15024" stop="14929"/>
                    <exon start="14149" stop="13961"/>
                    <exon start="13694" stop="13534"/>
                    <exon start="13396" stop="13204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILALAYNAVHKLWKWQRNERNVTGKASTAVPPQLWQPSSGILMTNDISDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSSVLNVLVSSGADAQLCVWSMDGWEKKASKFLQIPSGRAINPLAQTRVQFHQDQTHLLVVHETQIAIYEASKLECVKQWVSPNFAVTDATYSCDSQSIFASFDDGSVSIFTAAALKLRCRVNPAAYLPSNPRVYPLVVAAHPSESNQCAVGLTDGGVYVLEPLESEGKWGTPPPNENGVAPGMSSAATGLDQASR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13146" stop="12934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRSRIQPLDVSDKKWQCLLWKLRRYGRSVIQLKEGFKEKDKMLIIIGRLGIQFNLLRNFACFKLFLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15745" e_stop="15669"/>
            <exon e_start="15537" e_stop="15358"/>
            <exon e_start="15254" e_stop="15126"/>
            <exon e_start="15024" e_stop="14929"/>
            <exon e_start="14149" e_stop="13961"/>
            <exon e_start="13694" e_stop="12879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.422" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.551" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15745" e_stop="15669" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.422" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15668" i_stop="15538" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15537" e_stop="15358" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.789" acc_prob="0.823">
            <gDNA_intron_boundary i_start="15357" i_stop="15255" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15254" e_stop="15126" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15125" i_stop="15025" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15024" e_stop="14929" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14928" i_stop="14150" i_length="779"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14149" e_stop="13961" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.551">
            <gDNA_intron_boundary i_start="13960" i_stop="13695" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="13694" e_stop="12879" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15745" stop="15669"/>
              <exon start="15537" stop="15358"/>
              <exon start="15254" stop="15126"/>
              <exon start="15024" stop="14929"/>
              <exon start="14149" stop="14119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15022" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15006" stop="14929"/>
              <exon start="14149" stop="13961"/>
              <exon start="13694" stop="13538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="14929"/>
              <exon start="14149" stop="13964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14110" stop="13961"/>
              <exon start="13694" stop="12976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="12879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301576" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTGGCTTTGGCATACAATGCCGTACACAAACTCTGGAAGTGGCAACGGAACGAGAGGAACGTGACAGGAAAG : GCATCTACTGCTGTCCCCCCTCAATTATGGCAACCTTCCAGTGGAATTCTGATGACAAATGATATAAGCGACACAAACCCTGAAGAAGCTGTTCCATGCTTTGCACTTTCCAAGAATGACTCTTATGTTATGTCCGCATCTGGTGGAAAAATTTCTTTGTTTAACATGATGACTTTTAAG : ACCATGACAACTTTCATGCCCCCTCCACCTGCAGCAACTTTTCTTGCTTTTCATCCACAGGATAATAACATTATTGCTATCGGAATGGAGGACTCTTCTATACAAATATATAATGTTCGCGTTGATGAG : GTGAAAAGCAAACTCAAAGGTCATCAGAAGAGAGTAACTGGCTTGGCTTTCTCTAGCGTTTTGAATGTTCTGGTATCATCTGGTGCTGATGCTCAG : CTATGTGTTTGGAGCATGGATGGATGGGAGAAGAAAGCCAGCAAGTTTTTGCAGATCCCCTCTGGTAGAGCAATAAATCCTCTTGCTCAGACACGGGTTCAGTTCCATCAAGATCAGACGCATTTGTTGGTTGTTCATGAAACACAGATAGCAATATATGAAGCATCAAAGCTTGAATGCGTGAAGCAG : TGGGTTTCACCAAATTTTGCAGTTACTGATGCGACGTATTCGTGTGATAGCCAATCAATTTTTGCAAGTTTTGATGATGGAAGTGTGAGTATCTTTACCGCTGCAGCACTCAAGCTGAGGTGTCGGGTGAATCCTGCCGCCTACTTGCCTTCTAACCCAAGGTATGCATCTTTGTATTCTAATTTTTTTCCAAAGGTATGAATCATATCAGGGACAATAGGGGACTAAAACTAGGTGTAGTTTCATATTCTCTCATGTCTGTCTCCTAGTTGCCTGACAATGTACTTGACAGCTCCAGAGTATATCCACTTGTCGTTGCTGCTCATCCATCTGAATCAAACCAATGCGCAGTAGGACTTACTGATGGCGGAGTTTATGTGCTTGAGCCTCTAGAGTCGGAAGGTAAATGGGGCACACCACCTCCAAATGAAAATGGTGTTGCCCCTGGCATGAGCTCTGCTGCCACTGGTCTTGATCAAGCATCAAGGTAGCGGCAGTGGTCTCTCTGATGCAAATGCTCCTGTGCTATATTTTCGGGGGAGCTGTAGATTTTCAGATCTAGGATACAACCTCTTGACGTCAGTGATAAGAAGTGGCAGTGTCTCCTGTGGAAGCTGAGACGGTATGGAAGATCAGTTATTCAGTTAAAGGAAGGATTCAAAGAAAAAGACAAAATGTTGATAATTATAGGTAGATTAGGGATTCAGTTCAACCTCTTGAGAAATTTTGCCTGTTTTAAGTTGTTTCTGTCCAAGCACTAAACTATGGCAGTGTAATTATCGAAAGCTCAAGCAAGCCAGTTGATTTTACTCTCTC</gDNA_template>
            <first_frame> Q  F  W  L  W  H  T  M  P  Y  T  N  S  G  S  G  N  G  T  R  G  T  *  Q  E  R :   H  L  L  L  S  P  L  N  Y  G  N  L  P  V  E  F  *  *  Q  M  I  *  A  T  Q  T  L  K  K  L  F  H  A  L  H  F  P  R  M  T  L  M  L  C  P  H  L  V  E  K  F  L  C  L  T  *  *  L  L  R :   P  *  Q  L  S  C  P  L  H  L  Q  Q  L  F  L  L  F  I  H  R  I  I  T  L  L  L  S  E  W  R  T  L  L  Y  K  Y  I  M  F  A  L  M  R :   *  K  A  N  S  K  V  I  R  R  E  *  L  A  W  L  S  L  A  F  *  M  F  W  Y  H  L  V  L  M  L  S :   Y  V  F  G  A  W  M  D  G  R  R  K  P  A  S  F  C  R  S  P  L  V  E  Q  *  I  L  L  L  R  H  G  F  S  S  I  K  I  R  R  I  C  W  L  F  M  K  H  R  *  Q  Y  M  K  H  Q  S  L  N  A  *  S  S :   G  F  H  Q  I  L  Q  L  L  M  R  R  I  R  V  I  A  N  Q  F  L  Q  V  L  M  M  E  V  *  V  S  L  P  L  Q  H  S  S  *  G  V  G  *  I  L  P  P  T  C  L  L  T  Q  G  M  H  L  C  I  L  I  F  F  Q  R  Y  E  S  Y  Q  G  Q  *  G  T  K  T  R  C  S  F  I  F  S  H  V  C  L  L  V  A  *  Q  C  T  *  Q  L  Q  S  I  S  T  C  R  C  C  S  S  I  *  I  K  P  M  R  S  R  T  Y  *  W  R  S  L  C  A  *  A  S  R  V  G  R  *  M  G  H  T  T  S  K  *  K  W  C  C  P  W  H  E  L  C  C  H  W  S  *  S  S  I  K  V  A  A  V  V  S  L  M  Q  M  L  L  C  Y  I  F  G  G  A  V  D  F  Q  I  *  D  T  T  S  *  R  Q  *  *  E  V  A  V  S  P  V  E  A  E  T  V  W  K  I  S  Y  S  V  K  G  R  I  Q  R  K  R  Q  N  V  D  N  Y  R  *  I  R  D  S  V  Q  P  L  E  K  F  C  L  F  *  V  V  S  V  Q  A  L  N  Y  G  S  V  I  I  E  S  S  S  K  P  V  D  F  T  L   </first_frame>
            <second_frame>  N  S  G  F  G  I  Q  C  R  T  Q  T  L  E  V  A  T  E  R  E  E  R  D  R  K   : G  I  Y  C  C  P  P  S  I  M  A  T  F  Q  W  N  S  D  D  K  *  Y  K  R  H  K  P  *  R  S  C  S  M  L  C  T  F  Q  E  *  L  L  C  Y  V  R  I  W  W  K  N  F  F  V  *  H  D  D  F  *   : D  H  D  N  F  H  A  P  S  T  C  S  N  F  S  C  F  S  S  T  G  *  *  H  Y  C  Y  R  N  G  G  L  F  Y  T  N  I  *  C  S  R  *  *   : G  E  K  Q  T  Q  R  S  S  E  E  S  N  W  L  G  F  L  *  R  F  E  C  S  G  I  I  W  C  *  C  S   : A  M  C  L  E  H  G  W  M  G  E  E  S  Q  Q  V  F  A  D  P  L  W  *  S  N  K  S  S  C  S  D  T  G  S  V  P  S  R  S  D  A  F  V  G  C  S  *  N  T  D  S  N  I  *  S  I  K  A  *  M  R  E  A   : V  G  F  T  K  F  C  S  Y  *  C  D  V  F  V  *  *  P  I  N  F  C  K  F  *  *  W  K  C  E  Y  L  Y  R  C  S  T  Q  A  E  V  S  G  E  S  C  R  L  L  A  F  *  P  K  V  C  I  F  V  F  *  F  F  S  K  G  M  N  H  I  R  D  N  R  G  L  K  L  G  V  V  S  Y  S  L  M  S  V  S  *  L  P  D  N  V  L  D  S  S  R  V  Y  P  L  V  V  A  A  H  P  S  E  S  N  Q  C  A  V  G  L  T  D  G  G  V  Y  V  L  E  P  L  E  S  E  G  K  W  G  T  P  P  P  N  E  N  G  V  A  P  G  M  S  S  A  A  T  G  L  D  Q  A  S  R  *  R  Q  W  S  L  *  C  K  C  S  C  A  I  F  S  G  E  L  *  I  F  R  S  R  I  Q  P  L  D  V  S  D  K  K  W  Q  C  L  L  W  K  L  R  R  Y  G  R  S  V  I  Q  L  K  E  G  F  K  E  K  D  K  M  L  I  I  I  G  R  L  G  I  Q  F  N  L  L  R  N  F  A  C  F  K  L  F  L  S  K  H  *  T  M  A  V  *  L  S  K  A  Q  A  S  Q  L  I  L  L  S  </second_frame>
            <third_frame>   I  L  A  L  A  Y  N  A  V  H  K  L  W  K  W  Q  R  N  E  R  N  V  T  G  K  :  A  S  T  A  V  P  P  Q  L  W  Q  P  S  S  G  I  L  M  T  N  D  I  S  D  T  N  P  E  E  A  V  P  C  F  A  L  S  K  N  D  S  Y  V  M  S  A  S  G  G  K  I  S  L  F  N  M  M  T  F  K  :  T  M  T  T  F  M  P  P  P  P  A  A  T  F  L  A  F  H  P  Q  D  N  N  I  I  A  I  G  M  E  D  S  S  I  Q  I  Y  N  V  R  V  D  E  :  V  K  S  K  L  K  G  H  Q  K  R  V  T  G  L  A  F  S  S  V  L  N  V  L  V  S  S  G  A  D  A  Q  :  L  C  V  W  S  M  D  G  W  E  K  K  A  S  K  F  L  Q  I  P  S  G  R  A  I  N  P  L  A  Q  T  R  V  Q  F  H  Q  D  Q  T  H  L  L  V  V  H  E  T  Q  I  A  I  Y  E  A  S  K  L  E  C  V  K  Q  :  W  V  S  P  N  F  A  V  T  D  A  T  Y  S  C  D  S  Q  S  I  F  A  S  F  D  D  G  S  V  S  I  F  T  A  A  A  L  K  L  R  C  R  V  N  P  A  A  Y  L  P  S  N  P  R  Y  A  S  L  Y  S  N  F  F  P  K  V  *  I  I  S  G  T  I  G  D  *  N  *  V  *  F  H  I  L  S  C  L  S  P  S  C  L  T  M  Y  L  T  A  P  E  Y  I  H  L  S  L  L  L  I  H  L  N  Q  T  N  A  Q  *  D  L  L  M  A  E  F  M  C  L  S  L  *  S  R  K  V  N  G  A  H  H  L  Q  M  K  M  V  L  P  L  A  *  A  L  L  P  L  V  L  I  K  H  Q  G  S  G  S  G  L  S  D  A  N  A  P  V  L  Y  F  R  G  S  C  R  F  S  D  L  G  Y  N  L  L  T  S  V  I  R  S  G  S  V  S  C  G  S  *  D  G  M  E  D  Q  L  F  S  *  R  K  D  S  K  K  K  T  K  C  *  *  L  *  V  D  *  G  F  S  S  T  S  *  E  I  L  P  V  L  S  C  F  C  P  S  T  K  L  W  Q  C  N  Y  R  K  L  K  Q  A  S  *  F  Y  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15743" stop="15669"/>
                    <exon start="15537" stop="15358"/>
                    <exon start="15254" stop="15126"/>
                    <exon start="15024" stop="14929"/>
                    <exon start="14149" stop="13961"/>
                    <exon start="13694" stop="13494"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILALAYNAVHKLWKWQRNERNVTGKASTAVPPQLWQPSSGILMTNDISDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSSVLNVLVSSGADAQLCVWSMDGWEKKASKFLQIPSGRAINPLAQTRVQFHQDQTHLLVVHETQIAIYEASKLECVKQWVSPNFAVTDATYSCDSQSIFASFDDGSVSIFTAAALKLRCRVNPAAYLPSNPRYASLYSNFFPKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13425" stop="13204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPDNVLDSSRVYPLVVAAHPSESNQCAVGLTDGGVYVLEPLESEGKWGTPPPNENGVAPGMSSAATGLDQASR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13146" stop="12934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRSRIQPLDVSDKKWQCLLWKLRRYGRSVIQLKEGFKEKDKMLIIIGRLGIQFNLLRNFACFKLFLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12934" PGL_stop="13170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12934" e_stop="13170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="12934" e_stop="13170" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12934" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGTGCTTGGACAGAAACAACTTAAAACAGGCAAAATTTCTCAAGAGGTTGAACTGAATCCCTAATCTACCTATAATTATCAACATTTTGTCTTTTTCTTTGAATCCTTCCTTTAACTGAATAACTGATCTTCCATACCGTCTCAGCTTCCACAGGAGACACTGCCACTTCTTATCACTGACGTCAAGAGGTTGTATCCTAGATCTGAAAATCTACAGCTCCCCCGAAAATATAGC</gDNA_template>
            <first_frame> L  V  L  G  Q  K  Q  L  K  T  G  K  I  S  Q  E  V  E  L  N  P  *  S  T  Y  N  Y  Q  H  F  V  F  F  F  E  S  F  L  *  L  N  N  *  S  S  I  P  S  Q  L  P  Q  E  T  L  P  L  L  I  T  D  V  K  R  L  Y  P  R  S  E  N  L  Q  L  P  R  K  Y  S </first_frame>
            <second_frame>  *  C  L  D  R  N  N  L  K  Q  A  K  F  L  K  R  L  N  *  I  P  N  L  P  I  I  I  N  I  L  S  F  S  L  N  P  S  F  N  *  I  T  D  L  P  Y  R  L  S  F  H  R  R  H  C  H  F  L  S  L  T  S  R  G  C  I  L  D  L  K  I  Y  S  S  P  E  N  I   </second_frame>
            <third_frame>   S  A  W  T  E  T  T  *  N  R  Q  N  F  S  R  G  *  T  E  S  L  I  Y  L  *  L  S  T  F  C  L  F  L  *  I  L  P  L  T  E  *  L  I  F  H  T  V  S  A  S  T  G  D  T  A  T  S  Y  H  *  R  Q  E  V  V  S  *  I  *  K  S  T  A  P  P  K  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0157P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20710" PGL_stop="18427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20710" e_stop="20553"/>
            <exon e_start="20431" e_stop="20254"/>
            <exon e_start="20126" e_stop="20006"/>
            <exon e_start="19852" e_stop="19737"/>
            <exon e_start="19493" e_stop="19325"/>
            <exon e_start="19224" e_stop="19115"/>
            <exon e_start="19027" e_stop="18958"/>
            <exon e_start="18485" e_stop="18427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.474" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20710" e_stop="20553" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20552" i_stop="20432" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20431" e_stop="20254" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20253" i_stop="20127" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20126" e_stop="20006" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.867">
            <gDNA_intron_boundary i_start="20005" i_stop="19853" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19852" e_stop="19737" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.717">
            <gDNA_intron_boundary i_start="19736" i_stop="19494" i_length="243"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19493" e_stop="19325" e_length="169"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19324" i_stop="19225" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19224" e_stop="19115" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.474" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19114" i_stop="19028" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19027" e_stop="18958" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18957" i_stop="18486" i_length="472"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="18485" e_stop="18427" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20710" stop="20553"/>
              <exon start="20431" stop="20254"/>
              <exon start="20126" stop="20006"/>
              <exon start="19852" stop="19806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20335" stop="20254"/>
              <exon start="20126" stop="20006"/>
              <exon start="19852" stop="19737"/>
              <exon start="19493" stop="19325"/>
              <exon start="19224" stop="19115"/>
              <exon start="19027" stop="18958"/>
              <exon start="18485" stop="18427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAATGAACAGCTTTCAAAGTATGGAGATACCAAGTCTGCTAGGGCGATAATGCTTGTTGAGTTAAAAAAATTGATCGAGGCCAATCCTCTTTTCCGCGAGAAGCTTCAGTTTCCTAGCTTAAAGAACTCAAGGCTGCGGACATTGATAAACCAGAG : TTTAAATTGGCAGCATCAGCTATGCAAGAACCCAAAGCCCAATCCTGATATAAAAACACTCTTTGTTGACCATGCTTGTGGGCAACCAAATGGTGCTCGGGCTCCTTCGCCAGTTGCTAATCCAATAATTGGTTCTATGCCTAAAGTAGGTGGTTTTCCACCTATAGGCGCCCATGGA : CCATTCCAGCCAGCACAAGCACCTATTGCTTCGCTTGGAGGATGGATGACCAATCCTCCCTCTATGCCACACCAAGCTATTTCAGGAGGACCAATAGGCTTAAGCCCTCCTACTAATGCTG : CATCCATGCTAAAGCATCCTAGGACTCCTCCTGCTAGCAATGCTGCGTTGGACTACCAAACAGCCGATTCAGAGCATGTACTGAAGAGGCCAAGACCCTTTGGGATGTCAGAGGAG : GTCAATAATCTCCCCGTCAACATTTTCCCCGTCACATATCCTGGACAGAGCCATGCTCATAGCTTGCATTCTTCTGATGACTTGCCCAAGACTGTTGTGGTGAACTTGAATCAAGGGTCTGCTGTTAAGAGCATGGATTTCCATCCTGTGCAACAAACTCTTCTTCTTG : TTGGAACAAACATTGGTGACATTGCTATATGGGAGATTGGTGGCAGGGAAAGGCTTGCATTTAAAAATTTTAAAGTTTGGGAGATAGGTAACTGTTCAATGACTTTGCAG : GCTTCTTTAGCGAATGAATACACTGCAACAGTTAACCGTGTGATGTGGAGTCCTGATGGGAACCTTCTTG : GTGTTGCATATTCTAAGCACATAGTTCATCTATACTCATACCATGGTGGTGATGATTTG</gDNA_template>
            <first_frame> E  N  E  Q  L  S  K  Y  G  D  T  K  S  A  R  A  I  M  L  V  E  L  K  K  L  I  E  A  N  P  L  F  R  E  K  L  Q  F  P  S  L  K  N  S  R  L  R  T  L  I  N  Q  S :   L  N  W  Q  H  Q  L  C  K  N  P  K  P  N  P  D  I  K  T  L  F  V  D  H  A  C  G  Q  P  N  G  A  R  A  P  S  P  V  A  N  P  I  I  G  S  M  P  K  V  G  G  F  P  P  I  G  A  H  G  :  P  F  Q  P  A  Q  A  P  I  A  S  L  G  G  W  M  T  N  P  P  S  M  P  H  Q  A  I  S  G  G  P  I  G  L  S  P  P  T  N  A   : A  S  M  L  K  H  P  R  T  P  P  A  S  N  A  A  L  D  Y  Q  T  A  D  S  E  H  V  L  K  R  P  R  P  F  G  M  S  E  E  :  V  N  N  L  P  V  N  I  F  P  V  T  Y  P  G  Q  S  H  A  H  S  L  H  S  S  D  D  L  P  K  T  V  V  V  N  L  N  Q  G  S  A  V  K  S  M  D  F  H  P  V  Q  Q  T  L  L  L   : V  G  T  N  I  G  D  I  A  I  W  E  I  G  G  R  E  R  L  A  F  K  N  F  K  V  W  E  I  G  N  C  S  M  T  L  Q  :  A  S  L  A  N  E  Y  T  A  T  V  N  R  V  M  W  S  P  D  G  N  L  L   : G  V  A  Y  S  K  H  I  V  H  L  Y  S  Y  H  G  G  D  D  L </first_frame>
            <second_frame>  R  M  N  S  F  Q  S  M  E  I  P  S  L  L  G  R  *  C  L  L  S  *  K  N  *  S  R  P  I  L  F  S  A  R  S  F  S  F  L  A  *  R  T  Q  G  C  G  H  *  *  T  R   : V  *  I  G  S  I  S  Y  A  R  T  Q  S  P  I  L  I  *  K  H  S  L  L  T  M  L  V  G  N  Q  M  V  L  G  L  L  R  Q  L  L  I  Q  *  L  V  L  C  L  K  *  V  V  F  H  L  *  A  P  M  D :   H  S  S  Q  H  K  H  L  L  L  R  L  E  D  G  *  P  I  L  P  L  C  H  T  K  L  F  Q  E  D  Q  *  A  *  A  L  L  L  M  L  :  H  P  C  *  S  I  L  G  L  L  L  L  A  M  L  R  W  T  T  K  Q  P  I  Q  S  M  Y  *  R  G  Q  D  P  L  G  C  Q  R  R :   S  I  I  S  P  S  T  F  S  P  S  H  I  L  D  R  A  M  L  I  A  C  I  L  L  M  T  C  P  R  L  L  W  *  T  *  I  K  G  L  L  L  R  A  W  I  S  I  L  C  N  K  L  F  F  L  :  L  E  Q  T  L  V  T  L  L  Y  G  R  L  V  A  G  K  G  L  H  L  K  I  L  K  F  G  R  *  V  T  V  Q  *  L  C  R :   L  L  *  R  M  N  T  L  Q  Q  L  T  V  *  C  G  V  L  M  G  T  F  L  :  V  L  H  I  L  S  T  *  F  I  Y  T  H  T  M  V  V  M  I   </second_frame>
            <third_frame>   E  *  T  A  F  K  V  W  R  Y  Q  V  C  *  G  D  N  A  C  *  V  K  K  I  D  R  G  Q  S  S  F  P  R  E  A  S  V  S  *  L  K  E  L  K  A  A  D  I  D  K  P  E  :  F  K  L  A  A  S  A  M  Q  E  P  K  A  Q  S  *  Y  K  N  T  L  C  *  P  C  L  W  A  T  K  W  C  S  G  S  F  A  S  C  *  S  N  N  W  F  Y  A  *  S  R  W  F  S  T  Y  R  R  P  W   : T  I  P  A  S  T  S  T  Y  C  F  A  W  R  M  D  D  Q  S  S  L  Y  A  T  P  S  Y  F  R  R  T  N  R  L  K  P  S  Y  *  C  C :   I  H  A  K  A  S  *  D  S  S  C  *  Q  C  C  V  G  L  P  N  S  R  F  R  A  C  T  E  E  A  K  T  L  W  D  V  R  G   : G  Q  *  S  P  R  Q  H  F  P  R  H  I  S  W  T  E  P  C  S  *  L  A  F  F  *  *  L  A  Q  D  C  C  G  E  L  E  S  R  V  C  C  *  E  H  G  F  P  S  C  A  T  N  S  S  S  C :   W  N  K  H  W  *  H  C  Y  M  G  D  W  W  Q  G  K  A  C  I  *  K  F  *  S  L  G  D  R  *  L  F  N  D  F  A   : G  F  F  S  E  *  I  H  C  N  S  *  P  C  D  V  E  S  *  W  E  P  S  W :   C  C  I  F  *  A  H  S  S  S  I  L  I  P  W  W  *  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20710" stop="20553"/>
                    <exon start="20431" stop="20254"/>
                    <exon start="20126" stop="20006"/>
                    <exon start="19852" stop="19737"/>
                    <exon start="19493" stop="19325"/>
                    <exon start="19224" stop="19115"/>
                    <exon start="19027" stop="18958"/>
                    <exon start="18485" stop="18427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENEQLSKYGDTKSARAIMLVELKKLIEANPLFREKLQFPSLKNSRLRTLINQSLNWQHQLCKNPKPNPDIKTLFVDHACGQPNGARAPSPVANPIIGSMPKVGGFPPIGAHGPFQPAQAPIASLGGWMTNPPSMPHQAISGGPIGLSPPTNAASMLKHPRTPPASNAALDYQTADSEHVLKRPRPFGMSEEVNNLPVNIFPVTYPGQSHAHSLHSSDDLPKTVVVNLNQGSAVKSMDFHPVQQTLLLVGTNIGDIAIWEIGGRERLAFKNFKVWEIGNCSMTLQASLANEYTATVNRVMWSPDGNLLGVAYSKHIVHLYSYHGGDDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34118" PGL_stop="29524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34118" e_stop="33862"/>
            <exon e_start="33596" e_stop="33449"/>
            <exon e_start="30811" e_stop="30549"/>
            <exon e_start="30410" e_stop="29524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.784" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34118" e_stop="33862" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.784" acc_prob="0.828">
            <gDNA_intron_boundary i_start="33861" i_stop="33597" i_length="265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33596" e_stop="33449" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="33448" i_stop="30812" i_length="2637"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30811" e_stop="30549" e_length="263"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.973">
            <gDNA_intron_boundary i_start="30548" i_stop="30411" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="30410" e_stop="29524" e_length="887"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="33862"/>
              <exon start="33596" stop="33449"/>
              <exon start="30811" stop="30771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33869" stop="33862"/>
              <exon start="33596" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="30212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33868" stop="33862"/>
              <exon start="33596" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="30360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33543" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="30274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33543" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="30336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33472" stop="33449"/>
              <exon start="30811" stop="30549"/>
              <exon start="30410" stop="29843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30151" stop="29524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30151" stop="29529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGCTGTAACGGAAATGGGGGAGCTTTATTCTTTTTGAGCAGAGAAAAACAGTCAGATAAAGTGATTGCTGAGTGGAGTTTACGGCTTTTTCTTCTTTTCTGCTATGGGGTTCTGAAAGATTGATTCTTGATCGACTTATTTGATATACTCTTCTGTTAAGAAAGAGAAAGTTGAGTTTTTTGCTGTTTCAATATTCAAAATTCAAAAGCTATGGACTTTTCGTCTATATTTTGCTGTGTCAAGGGTTCAGATCG : AAAGGGGCAAGCGAAGAAGCAGCCAACATGGAGGGTTTTTTCTCTGAAGGAGTTGCACTCTGCTACGAATAATTTTAACTATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTTTACTGGGGGCAGCTCTGGGATGGATCTCAG : ATAGCAGTCAAAAGGCTAAAGGTGTGGAGCAACAAAGCTGAGATGGAATTTGCTGTTGAAGTTGAAATTCTGGCTAGAGTACGACACAAAAATCTTCTAAGTTTACGCGGTTACTGTGCAGAAGGCCAGGAACGTCTGATCGTATATGACTACATGCCTAATTTAAGCTTGCTTTCTCATCTTCACGGCCAGCATTCTGCTGAAAGCCTTCTTGATTGGAAACGCCGAATGAATGTTGCAATTGGATCAGCTGAGGGAATTGC : CTATCTGCACCACCATGCAACCCCGCATATCATCCACAGAGACATCAAAGCAAGCAACGTGCTGCTCGATTCTGATTTCCAAGCCCAAGTTGCTGATTTTGGATTTGCAAAGTTCATCCCAGATGGTGCAACACATGTAACCACTAGAGTAAAAGGCACTCTAGGCTATCTTGCACCAGAATATGCAATGTTAGGGAAGGCATCGGAGAGCTGTGATGTTTACAGCTTTGGTATTCTTTTGCTAGAGCTTGCTAGTGGCAAGAAACCAATTGAGAAGGTCAATCTAACTGTGAAACGCACAATCACTGATTGGGCACTACCACTTGTGTGTGAAGGGAAGTTGAGTGAACTTGCAGACCCAAGGTTGAGTGGGAACTACGTGGAGGAAGAATTCAAAAGAGTGGTTCTTGTTGCTCTCGTTTGTGCTCAAAATCGACCTGAGAAGAGACCAACTATGCTTGACGTTATCGAGCTACTGAAAGGAGAAGCAAAAGAGAAATTCACAGCTTTGGAAAATGATGATATGTTCAAGATTCCTCCAGTAGTGGATGATGATGTTTTGTCAGGAACAGAAGGCAATGCAGACTCTACTGCTTCAGAGGAAAAAGAACCAAAACCAGAAATTGAAAAGGTAGAGGTACAAGCTTAAGAGAATGTGGGTAATTGATTGTGGCTTGTTCATATTGAATTTGTGTAGGACTTAATGTATTTTTTGGAGAAGAAATACTGATAATCATTACTTGGAACAACAGGTACTTTTCTTTTTTTTTTTGAATTGGAAGTATCATTTCATTGGGTTGTGCAGGAATGGATGTTATTCTCGTCTTTCGTGTGATTTTCTCGTGTAATATGTTGAACACAAGAAATGAAAACTGTTTATATGCTGA</gDNA_template>
            <first_frame> L  C  C  N  G  N  G  G  A  L  F  F  L  S  R  E  K  Q  S  D  K  V  I  A  E  W  S  L  R  L  F  L  L  F  C  Y  G  V  L  K  D  *  F  L  I  D  L  F  D  I  L  F  C  *  E  R  E  S  *  V  F  C  C  F  N  I  Q  N  S  K  A  M  D  F  S  S  I  F  C  C  V  K  G  S  D  R :   K  G  Q  A  K  K  Q  P  T  W  R  V  F  S  L  K  E  L  H  S  A  T  N  N  F  N  Y  D  N  K  L  G  E  G  G  F  G  S  V  Y  W  G  Q  L  W  D  G  S  Q  :  I  A  V  K  R  L  K  V  W  S  N  K  A  E  M  E  F  A  V  E  V  E  I  L  A  R  V  R  H  K  N  L  L  S  L  R  G  Y  C  A  E  G  Q  E  R  L  I  V  Y  D  Y  M  P  N  L  S  L  L  S  H  L  H  G  Q  H  S  A  E  S  L  L  D  W  K  R  R  M  N  V  A  I  G  S  A  E  G  I  A :   Y  L  H  H  H  A  T  P  H  I  I  H  R  D  I  K  A  S  N  V  L  L  D  S  D  F  Q  A  Q  V  A  D  F  G  F  A  K  F  I  P  D  G  A  T  H  V  T  T  R  V  K  G  T  L  G  Y  L  A  P  E  Y  A  M  L  G  K  A  S  E  S  C  D  V  Y  S  F  G  I  L  L  L  E  L  A  S  G  K  K  P  I  E  K  V  N  L  T  V  K  R  T  I  T  D  W  A  L  P  L  V  C  E  G  K  L  S  E  L  A  D  P  R  L  S  G  N  Y  V  E  E  E  F  K  R  V  V  L  V  A  L  V  C  A  Q  N  R  P  E  K  R  P  T  M  L  D  V  I  E  L  L  K  G  E  A  K  E  K  F  T  A  L  E  N  D  D  M  F  K  I  P  P  V  V  D  D  D  V  L  S  G  T  E  G  N  A  D  S  T  A  S  E  E  K  E  P  K  P  E  I  E  K  V  E  V  Q  A  *  E  N  V  G  N  *  L  W  L  V  H  I  E  F  V  *  D  L  M  Y  F  L  E  K  K  Y  *  *  S  L  L  G  T  T  G  T  F  L  F  F  F  E  L  E  V  S  F  H  W  V  V  Q  E  W  M  L  F  S  S  F  V  *  F  S  R  V  I  C  *  T  Q  E  M  K  T  V  Y  M  L  </first_frame>
            <second_frame>  F  A  V  T  E  M  G  E  L  Y  S  F  *  A  E  K  N  S  Q  I  K  *  L  L  S  G  V  Y  G  F  F  F  F  S  A  M  G  F  *  K  I  D  S  *  S  T  Y  L  I  Y  S  S  V  K  K  E  K  V  E  F  F  A  V  S  I  F  K  I  Q  K  L  W  T  F  R  L  Y  F  A  V  S  R  V  Q  I   : E  R  G  K  R  R  S  S  Q  H  G  G  F  F  L  *  R  S  C  T  L  L  R  I  I  L  T  M  I  T  S  L  E  K  V  V  L  E  V  F  T  G  G  S  S  G  M  D  L  R :   *  Q  S  K  G  *  R  C  G  A  T  K  L  R  W  N  L  L  L  K  L  K  F  W  L  E  Y  D  T  K  I  F  *  V  Y  A  V  T  V  Q  K  A  R  N  V  *  S  Y  M  T  T  C  L  I  *  A  C  F  L  I  F  T  A  S  I  L  L  K  A  F  L  I  G  N  A  E  *  M  L  Q  L  D  Q  L  R  E  L   : P  I  C  T  T  M  Q  P  R  I  S  S  T  E  T  S  K  Q  A  T  C  C  S  I  L  I  S  K  P  K  L  L  I  L  D  L  Q  S  S  S  Q  M  V  Q  H  M  *  P  L  E  *  K  A  L  *  A  I  L  H  Q  N  M  Q  C  *  G  R  H  R  R  A  V  M  F  T  A  L  V  F  F  C  *  S  L  L  V  A  R  N  Q  L  R  R  S  I  *  L  *  N  A  Q  S  L  I  G  H  Y  H  L  C  V  K  G  S  *  V  N  L  Q  T  Q  G  *  V  G  T  T  W  R  K  N  S  K  E  W  F  L  L  L  S  F  V  L  K  I  D  L  R  R  D  Q  L  C  L  T  L  S  S  Y  *  K  E  K  Q  K  R  N  S  Q  L  W  K  M  M  I  C  S  R  F  L  Q  *  W  M  M  M  F  C  Q  E  Q  K  A  M  Q  T  L  L  L  Q  R  K  K  N  Q  N  Q  K  L  K  R  *  R  Y  K  L  K  R  M  W  V  I  D  C  G  L  F  I  L  N  L  C  R  T  *  C  I  F  W  R  R  N  T  D  N  H  Y  L  E  Q  Q  V  L  F  F  F  F  L  N  W  K  Y  H  F  I  G  L  C  R  N  G  C  Y  S  R  L  S  C  D  F  L  V  *  Y  V  E  H  K  K  *  K  L  F  I  C  * </second_frame>
            <third_frame>   L  L  *  R  K  W  G  S  F  I  L  F  E  Q  R  K  T  V  R  *  S  D  C  *  V  E  F  T  A  F  S  S  F  L  L  W  G  S  E  R  L  I  L  D  R  L  I  *  Y  T  L  L  L  R  K  R  K  L  S  F  L  L  F  Q  Y  S  K  F  K  S  Y  G  L  F  V  Y  I  L  L  C  Q  G  F  R  S  :  K  G  A  S  E  E  A  A  N  M  E  G  F  F  S  E  G  V  A  L  C  Y  E  *  F  *  L  *  *  Q  A  W  R  R  W  F  W  K  C  L  L  G  A  A  L  G  W  I  S   : D  S  S  Q  K  A  K  G  V  E  Q  Q  S  *  D  G  I  C  C  *  S  *  N  S  G  *  S  T  T  Q  K  S  S  K  F  T  R  L  L  C  R  R  P  G  T  S  D  R  I  *  L  H  A  *  F  K  L  A  F  S  S  S  R  P  A  F  C  *  K  P  S  *  L  E  T  P  N  E  C  C  N  W  I  S  *  G  N  C  :  L  S  A  P  P  C  N  P  A  Y  H  P  Q  R  H  Q  S  K  Q  R  A  A  R  F  *  F  P  S  P  S  C  *  F  W  I  C  K  V  H  P  R  W  C  N  T  C  N  H  *  S  K  R  H  S  R  L  S  C  T  R  I  C  N  V  R  E  G  I  G  E  L  *  C  L  Q  L  W  Y  S  F  A  R  A  C  *  W  Q  E  T  N  *  E  G  Q  S  N  C  E  T  H  N  H  *  L  G  T  T  T  C  V  *  R  E  V  E  *  T  C  R  P  K  V  E  W  E  L  R  G  G  R  I  Q  K  S  G  S  C  C  S  R  L  C  S  K  S  T  *  E  E  T  N  Y  A  *  R  Y  R  A  T  E  R  R  S  K  R  E  I  H  S  F  G  K  *  *  Y  V  Q  D  S  S  S  S  G  *  *  C  F  V  R  N  R  R  Q  C  R  L  Y  C  F  R  G  K  R  T  K  T  R  N  *  K  G  R  G  T  S  L  R  E  C  G  *  L  I  V  A  C  S  Y  *  I  C  V  G  L  N  V  F  F  G  E  E  I  L  I  I  I  T  W  N  N  R  Y  F  S  F  F  F  *  I  G  S  I  I  S  L  G  C  A  G  M  D  V  I  L  V  F  R  V  I  F  S  C  N  M  L  N  T  R  N  E  N  C  L  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33941" stop="33862"/>
                    <exon start="33596" stop="33449"/>
                    <exon start="30811" stop="30549"/>
                    <exon start="30410" stop="29762"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCCFNIQNSKAMDFSSIFCCVKGSDRKGQAKKQPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKAEMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWKRRMNVAIGSAEGIAYLHHHATPHIIHRDIKASNVLLDSDFQAQVADFGFAKFIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKKPIEKVNLTVKRTITDWALPLVCEGKLSELADPRLSGNYVEEEFKRVVLVALVCAQNRPEKRPTMLDVIELLKGEAKEKFTALENDDMFKIPPVVDDDVLSGTEGNADSTASEEKEPKPEIEKVEVQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40600" PGL_stop="55549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44134"/>
            <exon e_start="44370" e_stop="44399"/>
            <exon e_start="44531" e_stop="44541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.526" e_score="0.633"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44134" e_length="367"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44135" i_stop="44369" i_length="235"/>
          </intron>
          <exon e_serial="6" e_score="0.633">
            <gDNA_exon_boundary e_start="44370" e_stop="44399" e_length="30"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="44400" i_stop="44530" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="0.727">
            <gDNA_exon_boundary e_start="44531" e_stop="44541" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40769" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40780" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40926" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44370" stop="44399"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42766" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44370" stop="44399"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA : AATTATGTAAAAAAAAAAAACCGAGTACAA : AAAGATAATAA</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H  T  L  L  * :   I  M  *  K  K  K  T  E  Y  K :   K  I  I  </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  L  C  Y   : K  L  C  K  K  K  K  P  S  T   : K  R  *  * </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  Y  F  A  I  :  N  Y  V  K  K  K  N  R  V  Q  :  K  D  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="43768" e_stop="44194" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40769" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40780" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40926" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43863" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATAATTTTGCTTTCTGCTTCTCAGTTTGTTCTACAATTTTTTTGCTGTGATGAATGAAATGAT</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H  T  L  L  *  F  C  F  L  L  L  S  L  F  Y  N  F  F  A  V  M  N  E  M   </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  L  C  Y  N  F  A  F  C  F  S  V  C  S  T  I  F  L  L  *  *  M  K  *  </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  Y  F  A  I  I  L  L  S  A  S  Q  F  V  L  Q  F  F  C  C  D  E  *  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44134"/>
            <exon e_start="44378" e_stop="44393"/>
            <exon e_start="44531" e_stop="44541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.526" e_score="0.812"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44134" e_length="367"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44135" i_stop="44377" i_length="243"/>
          </intron>
          <exon e_serial="6" e_score="0.812">
            <gDNA_exon_boundary e_start="44378" e_stop="44393" e_length="16"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="44394" i_stop="44530" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="0.727">
            <gDNA_exon_boundary e_start="44531" e_stop="44541" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40769" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40780" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40926" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42747" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44378" stop="44393"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42747" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44378" stop="44393"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA : AAAAAAAAAAAACCGA : AAAGATAATAA</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H  T  L  L  * :   K  K  K  N  R  :  K  D  N   </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  L  C  Y   : K  K  K  K  T  E :   K  I  I  </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  Y  F  A  I  :  K  K  K  K  P   : K  R  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44124"/>
            <exon e_start="44531" e_stop="44548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.526" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44124" e_length="357"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="44125" i_stop="44530" i_length="406"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="44531" e_stop="44548" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40769" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40780" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40926" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42741" stop="42779"/>
              <exon start="43768" stop="44124"/>
              <exon start="44531" stop="44548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATA : AAAGATAATAAGGGGTGA</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H   : K  R  *  *  G  V  </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  :  K  D  N  K  G  * </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  * :   K  I  I  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44124"/>
            <exon e_start="44658" e_stop="44668"/>
            <exon e_start="44895" e_stop="44909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.590" e_score="0.909"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44124" e_length="357"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44125" i_stop="44657" i_length="533"/>
          </intron>
          <exon e_serial="6" e_score="0.909">
            <gDNA_exon_boundary e_start="44658" e_stop="44668" e_length="11"/>
          </exon>
          <intron i_serial="6" don_prob="0.869" acc_prob="0.590">
            <gDNA_intron_boundary i_start="44669" i_stop="44894" i_length="226"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="44895" e_stop="44909" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40769" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40780" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40926" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="43951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42277" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
              <exon start="44658" stop="44668"/>
              <exon start="44895" stop="44909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATA : AAAAAAAAGAA : AAGATTCCGGGACGA</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H   : K  K  K  E  :  K  I  P  G  R </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  :  K  K  K  K :   R  F  R  D   </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  * :   K  K  R   : K  D  S  G  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="40600" e_stop="41077"/>
            <exon e_start="41216" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40600" e_stop="41077" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41078" i_stop="41215" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41216" e_stop="41336" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42915" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40773" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40775" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40777" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40778" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40781" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40803" stop="41077"/>
              <exon start="41216" stop="41290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40881" stop="41077"/>
              <exon start="41216" stop="41336"/>
              <exon start="42091" stop="42307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40893" stop="41077"/>
              <exon start="41216" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42123" stop="42311"/>
              <exon start="42606" stop="42915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGACAAACATTAGTTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAG : GTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAGGTACAAACTGGAGCTTTAGAGGCCAACTTTTCCTGATGTGGTTTATCTTTTTAATCTGGGATTTTTAGTTTTATTTTTGTTTACGGGTAGTGGTCTTACTGTTTTTGGTTCTCATATTTTTTAATGAACACTTATT</gDNA_template>
            <first_frame> L  R  Q  T  L  V  A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S   : G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *  G  T  N  W  S  F  R  G  Q  L  F  L  M  W  F  I  F  L  I  W  D  F  *  F  Y  F  C  L  R  V  V  V  L  L  F  L  V  L  I  F  F  N  E  H  L   </first_frame>
            <second_frame>  L  D  K  H  *  L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  :  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  V  Q  T  G  A  L  E  A  N  F  S  *  C  G  L  S  F  *  S  G  I  F  S  F  I  F  V  Y  G  *  W  S  Y  C  F  W  F  S  Y  F  L  M  N  T  Y  </second_frame>
            <third_frame>   *  T  N  I  S  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R :   L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R  Y  K  L  E  L  *  R  P  T  F  P  D  V  V  Y  L  F  N  L  G  F  L  V  L  F  L  F  T  G  S  G  L  T  V  F  G  S  H  I  F  *  *  T  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41077"/>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42815"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVQTGALEANFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="40616" e_stop="41336"/>
            <exon e_start="42091" e_stop="42311"/>
            <exon e_start="42606" e_stop="42779"/>
            <exon e_start="43768" e_stop="44134"/>
            <exon e_start="44370" e_stop="44399"/>
            <exon e_start="44531" e_stop="44541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.526" e_score="0.633"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40616" e_stop="41336" e_length="721"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41337" i_stop="42090" i_length="754"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42091" e_stop="42311" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42312" i_stop="42605" i_length="294"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42606" e_stop="42779" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42780" i_stop="43767" i_length="988"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43768" e_stop="44134" e_length="367"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44135" i_stop="44369" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="0.633">
            <gDNA_exon_boundary e_start="44370" e_stop="44399" e_length="30"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="44400" i_stop="44530" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="0.727">
            <gDNA_exon_boundary e_start="44531" e_stop="44541" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40797" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41336"/>
              <exon start="42091" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42311"/>
              <exon start="42606" stop="42779"/>
              <exon start="43768" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44370" stop="44399"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42766" stop="42779"/>
              <exon start="43768" stop="44134"/>
              <exon start="44370" stop="44399"/>
              <exon start="44531" stop="44541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43770" stop="43996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCGGCAACATGACGGTGTACTTCCATAATCTCCACCATGAATTCCCGGAAGGACGTAACACTCTCCCCTTTAAGCGCGTGTTCGGGGACGCTCCTTCTCATCTCCACTATATAAAAAGAGGAACCTAACCCACCAAGGCAAAAATTGAGTGCACCTCAAGATAAAGCTTCGAATCCCCAAAACCTTTAGACTCGCAAAAAACCCTAATTCCAATTCCAATTTCATTTCATATTATCAGCAAAATTAGTTTGATCTGCCGAGAGGCAGACGGAGATTTACAATGTCTGCAATTGTCTGCGGCAAGAGATCTTTCTTCGAAGATTTACAATCGCCGTCGCCGACATCAGCGTCGCCGCCTGTTTCCAAGAAGATTCGTTGCTCTTCCTCTACTTCTCCGGTTCGGTTCCCGACCAGTTTGATCGATCAACTGAGAACTTTGTTTCCTGATATGGATAATCAGGTTTTTTCATTTTCTTTCTTGTTTTTAGTTATCTTTTTTAAATTCACAGTTTTGATGTTTTCCTTGTATAACAATATCTGATATATATATATATATATATATATATATATGTTTATCTTTTTATGATGTACTGTTTAGGTTGTTGAGAAGGCTTTGGAAGAGTCCGGCAATGACTTGGATGCTGCTATTAAGAGGTTACATGAGCTTCACCTTGTGTATGGCGATGCAAAGACAGTTGCTGATGGAGAGATGGATAATG : GAGAAAAACCAACTAACGGGCCAGATGTTCAATCTGAAGGTCCTCCTCTCCAGAATAATCTTCCAGCTGATGGTGCAGAATGGGTGGAGTTGCTTGTCAGGGAAATGATGAGTGCTACAAGTGTAGATGATGCCAGGGCTAGGGCCACAAGGGTGTTGGAGAGCCTGGAGCGATCAATTAGTGTTCATGCTGGTGCTGCAGCAGCTGAAAATGTTCACAAG : GAAAATGTGATGCTGAAAGAGCAAATTGAAGTGTTCCTTAGAGAAAAGGCCATTTTTAAACGTGCTATTGCTATCCAACACGAAAGGCAAAAAGAGTATGATGATAGAAACCAGGAAGTGCAGCAATTGAAGCAGATGATTGCTCAATATCAGGAACAAATAAAAAATCTTGAG : GTGAATAATTATGCGTTGACAATGCATTTGCACCAGGCTCAGCAAAACAACTCTATTCCGGGACGCTTCCATCCAGACATCTTCTAGTGCGGAGGCTAGTCCAGTTAAAGCTGTGGAACATACAAAGAAACAAGCTTGTTGGCATCTTGTCAGCTGTGATATAGGATGTATTAATCAAATTATGAATCAATGTTGTTTTTATAATTAGATTGAGTAACGGTTTGCGTGTTGAGTTGAAGCCACTTTGGTGGATGACCCTGGTCAAGTAAGTAGTGTTGTACTGGACATCGTCCAAATGGTGAAGTCCTCAAACGTGCTAGTATTTAACTAATATCAGAAAACTGGCTATAAAACATACTTTGCTATA : AATTATGTAAAAAAAAAAAACCGAGTACAA : AAAGATAATAA</gDNA_template>
            <first_frame> L  R  Q  H  D  G  V  L  P  *  S  P  P  *  I  P  G  R  T  *  H  S  P  L  *  A  R  V  R  G  R  S  F  S  S  P  L  Y  K  K  R  N  L  T  H  Q  G  K  N  *  V  H  L  K  I  K  L  R  I  P  K  T  F  R  L  A  K  N  P  N  S  N  S  N  F  I  S  Y  Y  Q  Q  N  *  F  D  L  P  R  G  R  R  R  F  T  M  S  A  I  V  C  G  K  R  S  F  F  E  D  L  Q  S  P  S  P  T  S  A  S  P  P  V  S  K  K  I  R  C  S  S  S  T  S  P  V  R  F  P  T  S  L  I  D  Q  L  R  T  L  F  P  D  M  D  N  Q  V  F  S  F  S  F  L  F  L  V  I  F  F  K  F  T  V  L  M  F  S  L  Y  N  N  I  *  Y  I  Y  I  Y  I  Y  I  Y  M  F  I  F  L  *  C  T  V  *  V  V  E  K  A  L  E  E  S  G  N  D  L  D  A  A  I  K  R  L  H  E  L  H  L  V  Y  G  D  A  K  T  V  A  D  G  E  M  D  N   : G  E  K  P  T  N  G  P  D  V  Q  S  E  G  P  P  L  Q  N  N  L  P  A  D  G  A  E  W  V  E  L  L  V  R  E  M  M  S  A  T  S  V  D  D  A  R  A  R  A  T  R  V  L  E  S  L  E  R  S  I  S  V  H  A  G  A  A  A  A  E  N  V  H  K  :  E  N  V  M  L  K  E  Q  I  E  V  F  L  R  E  K  A  I  F  K  R  A  I  A  I  Q  H  E  R  Q  K  E  Y  D  D  R  N  Q  E  V  Q  Q  L  K  Q  M  I  A  Q  Y  Q  E  Q  I  K  N  L  E  :  V  N  N  Y  A  L  T  M  H  L  H  Q  A  Q  Q  N  N  S  I  P  G  R  F  H  P  D  I  F  *  C  G  G  *  S  S  *  S  C  G  T  Y  K  E  T  S  L  L  A  S  C  Q  L  *  Y  R  M  Y  *  S  N  Y  E  S  M  L  F  L  *  L  D  *  V  T  V  C  V  L  S  *  S  H  F  G  G  *  P  W  S  S  K  *  C  C  T  G  H  R  P  N  G  E  V  L  K  R  A  S  I  *  L  I  S  E  N  W  L  *  N  I  L  C  Y   : K  L  C  K  K  K  K  P  S  T   : K  R  *  * </first_frame>
            <second_frame>  C  G  N  M  T  V  Y  F  H  N  L  H  H  E  F  P  E  G  R  N  T  L  P  F  K  R  V  F  G  D  A  P  S  H  L  H  Y  I  K  R  G  T  *  P  T  K  A  K  I  E  C  T  S  R  *  S  F  E  S  P  K  P  L  D  S  Q  K  T  L  I  P  I  P  I  S  F  H  I  I  S  K  I  S  L  I  C  R  E  A  D  G  D  L  Q  C  L  Q  L  S  A  A  R  D  L  S  S  K  I  Y  N  R  R  R  R  H  Q  R  R  R  L  F  P  R  R  F  V  A  L  P  L  L  L  R  F  G  S  R  P  V  *  S  I  N  *  E  L  C  F  L  I  W  I  I  R  F  F  H  F  L  S  C  F  *  L  S  F  L  N  S  Q  F  *  C  F  P  C  I  T  I  S  D  I  Y  I  Y  I  Y  I  Y  I  C  L  S  F  Y  D  V  L  F  R  L  L  R  R  L  W  K  S  P  A  M  T  W  M  L  L  L  R  G  Y  M  S  F  T  L  C  M  A  M  Q  R  Q  L  L  M  E  R  W  I  M  :  E  K  N  Q  L  T  G  Q  M  F  N  L  K  V  L  L  S  R  I  I  F  Q  L  M  V  Q  N  G  W  S  C  L  S  G  K  *  *  V  L  Q  V  *  M  M  P  G  L  G  P  Q  G  C  W  R  A  W  S  D  Q  L  V  F  M  L  V  L  Q  Q  L  K  M  F  T  R :   K  M  *  C  *  K  S  K  L  K  C  S  L  E  K  R  P  F  L  N  V  L  L  L  S  N  T  K  G  K  K  S  M  M  I  E  T  R  K  C  S  N  *  S  R  *  L  L  N  I  R  N  K  *  K  I  L  R :   *  I  I  M  R  *  Q  C  I  C  T  R  L  S  K  T  T  L  F  R  D  A  S  I  Q  T  S  S  S  A  E  A  S  P  V  K  A  V  E  H  T  K  K  Q  A  C  W  H  L  V  S  C  D  I  G  C  I  N  Q  I  M  N  Q  C  C  F  Y  N  *  I  E  *  R  F  A  C  *  V  E  A  T  L  V  D  D  P  G  Q  V  S  S  V  V  L  D  I  V  Q  M  V  K  S  S  N  V  L  V  F  N  *  Y  Q  K  T  G  Y  K  T  Y  F  A  I  :  N  Y  V  K  K  K  N  R  V  Q  :  K  D  N   </second_frame>
            <third_frame>   A  A  T  *  R  C  T  S  I  I  S  T  M  N  S  R  K  D  V  T  L  S  P  L  S  A  C  S  G  T  L  L  L  I  S  T  I  *  K  E  E  P  N  P  P  R  Q  K  L  S  A  P  Q  D  K  A  S  N  P  Q  N  L  *  T  R  K  K  P  *  F  Q  F  Q  F  H  F  I  L  S  A  K  L  V  *  S  A  E  R  Q  T  E  I  Y  N  V  C  N  C  L  R  Q  E  I  F  L  R  R  F  T  I  A  V  A  D  I  S  V  A  A  C  F  Q  E  D  S  L  L  F  L  Y  F  S  G  S  V  P  D  Q  F  D  R  S  T  E  N  F  V  S  *  Y  G  *  S  G  F  F  I  F  F  L  V  F  S  Y  L  F  *  I  H  S  F  D  V  F  L  V  *  Q  Y  L  I  Y  I  Y  I  Y  I  Y  I  Y  V  Y  L  F  M  M  Y  C  L  G  C  *  E  G  F  G  R  V  R  Q  *  L  G  C  C  Y  *  E  V  T  *  A  S  P  C  V  W  R  C  K  D  S  C  *  W  R  D  G  *  W :   R  K  T  N  *  R  A  R  C  S  I  *  R  S  S  S  P  E  *  S  S  S  *  W  C  R  M  G  G  V  A  C  Q  G  N  D  E  C  Y  K  C  R  *  C  Q  G  *  G  H  K  G  V  G  E  P  G  A  I  N  *  C  S  C  W  C  C  S  S  *  K  C  S  Q   : G  K  C  D  A  E  R  A  N  *  S  V  P  *  R  K  G  H  F  *  T  C  Y  C  Y  P  T  R  K  A  K  R  V  *  *  *  K  P  G  S  A  A  I  E  A  D  D  C  S  I  S  G  T  N  K  K  S  *   : G  E  *  L  C  V  D  N  A  F  A  P  G  S  A  K  Q  L  Y  S  G  T  L  P  S  R  H  L  L  V  R  R  L  V  Q  L  K  L  W  N  I  Q  R  N  K  L  V  G  I  L  S  A  V  I  *  D  V  L  I  K  L  *  I  N  V  V  F  I  I  R  L  S  N  G  L  R  V  E  L  K  P  L  W  W  M  T  L  V  K  *  V  V  L  Y  W  T  S  S  K  W  *  S  P  Q  T  C  *  Y  L  T  N  I  R  K  L  A  I  K  H  T  L  L  * :   I  M  *  K  K  K  T  E  Y  K :   K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41216" stop="41336"/>
                    <exon start="42091" stop="42311"/>
                    <exon start="42606" stop="42779"/>
                    <exon start="43768" stop="43854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEKALEESGNDLDAAIKRLHELHLVYGDAKTVADGEMDNGEKPTNGPDVQSEGPPLQNNLPADGAEWVELLVREMMSATSVDDARARATRVLESLERSISVHAGAAAAENVHKENVMLKEQIEVFLREKAIFKRAIAIQHERQKEYDDRNQEVQQLKQMIAQYQEQIKNLEVNNYALTMHLHQAQQNNSIPGRFHPDIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40865" stop="41158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLPRGRRRFTMSAIVCGKRSFFEDLQSPSPTSASPPVSKKIRCSSSTSPVRFPTSLIDQLRTLFPDMDNQVFSFSFLFLVIFFKFTVLMFSLYNNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="44646" e_stop="45023"/>
            <exon e_start="45574" e_stop="45642"/>
            <exon e_start="46021" e_stop="46113"/>
            <exon e_start="47274" e_stop="47392"/>
            <exon e_start="48153" e_stop="48348"/>
            <exon e_start="49810" e_stop="49985"/>
            <exon e_start="51437" e_stop="51566"/>
            <exon e_start="52155" e_stop="52315"/>
            <exon e_start="53447" e_stop="53538"/>
            <exon e_start="54701" e_stop="54809"/>
            <exon e_start="55183" e_stop="55549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="44646" e_stop="45023" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45024" i_stop="45573" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45574" e_stop="45642" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45643" i_stop="46020" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46021" e_stop="46113" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46114" i_stop="47273" i_length="1160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47274" e_stop="47392" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47393" i_stop="48152" i_length="760"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48153" e_stop="48348" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.949">
            <gDNA_intron_boundary i_start="48349" i_stop="49809" i_length="1461"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="49810" e_stop="49985" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49986" i_stop="51436" i_length="1451"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51437" e_stop="51566" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="51567" i_stop="52154" i_length="588"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52155" e_stop="52315" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="52316" i_stop="53446" i_length="1131"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53447" e_stop="53538" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.973">
            <gDNA_intron_boundary i_start="53539" i_stop="54700" i_length="1162"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54701" e_stop="54809" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54810" i_stop="55182" i_length="373"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="55183" e_stop="55549" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44646" stop="45023"/>
              <exon start="45574" stop="45642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44803" stop="45023"/>
              <exon start="45574" stop="45642"/>
              <exon start="46021" stop="46113"/>
              <exon start="47274" stop="47357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45574" stop="45642"/>
              <exon start="46021" stop="46113"/>
              <exon start="47274" stop="47392"/>
              <exon start="48153" stop="48291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46045" stop="46113"/>
              <exon start="47274" stop="47392"/>
              <exon start="48153" stop="48348"/>
              <exon start="49810" stop="49985"/>
              <exon start="51437" stop="51566"/>
              <exon start="52155" stop="52306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49900" stop="49985"/>
              <exon start="51437" stop="51566"/>
              <exon start="52155" stop="52315"/>
              <exon start="53447" stop="53515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49900" stop="49985"/>
              <exon start="51437" stop="51566"/>
              <exon start="52155" stop="52241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52171" stop="52315"/>
              <exon start="53447" stop="53538"/>
              <exon start="54701" stop="54809"/>
              <exon start="55183" stop="55549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52214" stop="52315"/>
              <exon start="53447" stop="53538"/>
              <exon start="54701" stop="54809"/>
              <exon start="55183" stop="55545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTCTTGTGAAAAAAAAGAAGCAAGCAAGCATCAAAACGCGGGACAGTTAACCAGTCTTCTGTAGTCCAATGAACTCGACGGCAATGGCCAGCACAGCATCTCTATCTCTCCGTCCTTCTTCTCTCATCTCCGACCGTTCCCATTCTCCCTGTCTTCCTCCTTCCTCCTCCTCTAGTTTCTTCTCCGGTGGGACCCGCTTGTGGGCCCATACGAAGTTTATATCCATTTCCTTTTCTTCATCTCAGAAGATTCCGGGACGACGTTTTGGGAGATTGGTGGTTGCTGCTGCTGCCGATTATTACTCTACACTTGGGGTCCCAAAATCTGCTAACAGTAAAGACATCAAGGCTGCTTATCGAAGGTTAGCTCGACAG : TATCACCCTGATGTCAACAAGGAACCTAATGCACCAGAAAAGTTTAAGGAGATTAAAGATGCTTATGAG : ATACTATCAGATGACAAAAAAAGAGCACTATATGATCAATATGGTGAAGCCGGGGTGAAAAGTTCTGTAGGGGCCCAAGCCGGTGCTTACACG : ACAAATCCTTTTGATCTATTTGAGACATTCTTTGGACCTTCTATGGGTGGTTTTGGAATGGATGGAGCTGGATTTGGAACGCGTCGCCGCAGTACTGTTACCAAGGGTGAAGATCTACG : TTACGACATGACATTAGAATTTTCAGCGGCTATCTTTGGAGCTGAAAAAGATTTCGAGCTTTCACATCTTGAAACTTGTGAGGTCTGTGTGGGAACTGGGGCAAAGGTAGGCTCCAAAATGAGGATATGTTCAACTTGTGGTGGCCGAGGTCAAGTTATGAGGACCGAACAAACACCGTTTGGCATGTTTTCTCAG : GTTTCTGTCTGCCCAAACTGTGGTGGGGATGGTGAAATGATCTCTGAATATTGTCGTAAATGCTCAGGCGAGGGGCGGATACGAGTGAAGAAAGATATAAAAGTCAAGATACCCCCTGGAGTAAACAAGGGAAGTATCCTCAGAGTTGCTGGTGAGGGTGATGCAGGTCCTAGGGG : TGCCCCACCGGGAGATCTTTATGTCTATCTTGACATTGAAGAGATACCTGAGATCCAAAGAGATGGCATAAATCTGATTTCAACAGTTTCAGTCGGTTATCTAGATGCTATACTTGGGGCTGTTGTTAAG : GTTAAAACAGTGGATGGTTTGACTGATCTCCAGATTCCTCCAGGCACTCAACCTGGGGATGTGCTTGTCTTGGCAAGGAAAGGAGCACCAAAGCTAAATAAGCCATCAATACGCGGTGATCACTTGTTCACGATTAAAGTTAGCATACCAAAACGCATCAG : TGTGATGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTTACTAAGGGATCAAGCACTCGTACAAAAACTCGCCCGGCGGTTCAGCAAACGG : CAAAAGTTACTGAAACTCCAGTAGGTTCAGATTCAAGTGCAGCAAAAACTGATGAGTCATCATCAGAAGATCGAGACGATCCATTGAAGAAGTTAGCAAATTTTGCTGG : GTCTGTCGTAAATGGTGCACTGAAATGGTTAAGAGACAACCTGTAGTACTTGGTGCTGGGATACTGCCTCAGCAATCTTCTTTTATACGACAATGGCATTGAATTTTATGTGCTTCAAAACAGCCATTATTGCATCTTGCGGCCTTTCATTTCTTAGAATAACTTTTTGGTGATTCTGCCTGTAAAATTGAATCCAGCCACCTTATTCTTTTAGGAAACCTAATCCTTCGCCTTTGTAAATTCTGACAAATATATTCTCCACCTCAAAGAAGTTGGTGAGATGGATTCTAACAGCTATTTTTGTATAAGAAATTTTGTATGTCAGCAAGCATTTAACAGAAACCCAGAAATATCCCAACATTGGTAG</gDNA_template>
            <first_frame> F  F  L  V  K  K  K  K  Q  A  S  I  K  T  R  D  S  *  P  V  F  C  S  P  M  N  S  T  A  M  A  S  T  A  S  L  S  L  R  P  S  S  L  I  S  D  R  S  H  S  P  C  L  P  P  S  S  S  S  S  F  F  S  G  G  T  R  L  W  A  H  T  K  F  I  S  I  S  F  S  S  S  Q  K  I  P  G  R  R  F  G  R  L  V  V  A  A  A  A  D  Y  Y  S  T  L  G  V  P  K  S  A  N  S  K  D  I  K  A  A  Y  R  R  L  A  R  Q  :  Y  H  P  D  V  N  K  E  P  N  A  P  E  K  F  K  E  I  K  D  A  Y  E  :  I  L  S  D  D  K  K  R  A  L  Y  D  Q  Y  G  E  A  G  V  K  S  S  V  G  A  Q  A  G  A  Y  T  :  T  N  P  F  D  L  F  E  T  F  F  G  P  S  M  G  G  F  G  M  D  G  A  G  F  G  T  R  R  R  S  T  V  T  K  G  E  D  L  R :   Y  D  M  T  L  E  F  S  A  A  I  F  G  A  E  K  D  F  E  L  S  H  L  E  T  C  E  V  C  V  G  T  G  A  K  V  G  S  K  M  R  I  C  S  T  C  G  G  R  G  Q  V  M  R  T  E  Q  T  P  F  G  M  F  S  Q  :  V  S  V  C  P  N  C  G  G  D  G  E  M  I  S  E  Y  C  R  K  C  S  G  E  G  R  I  R  V  K  K  D  I  K  V  K  I  P  P  G  V  N  K  G  S  I  L  R  V  A  G  E  G  D  A  G  P  R  G :   A  P  P  G  D  L  Y  V  Y  L  D  I  E  E  I  P  E  I  Q  R  D  G  I  N  L  I  S  T  V  S  V  G  Y  L  D  A  I  L  G  A  V  V  K  :  V  K  T  V  D  G  L  T  D  L  Q  I  P  P  G  T  Q  P  G  D  V  L  V  L  A  R  K  G  A  P  K  L  N  K  P  S  I  R  G  D  H  L  F  T  I  K  V  S  I  P  K  R  I  S :   V  M  E  R  E  L  L  E  E  L  A  S  L  T  K  G  S  S  T  R  T  K  T  R  P  A  V  Q  Q  T   : A  K  V  T  E  T  P  V  G  S  D  S  S  A  A  K  T  D  E  S  S  S  E  D  R  D  D  P  L  K  K  L  A  N  F  A  G :   S  V  V  N  G  A  L  K  W  L  R  D  N  L  *  Y  L  V  L  G  Y  C  L  S  N  L  L  L  Y  D  N  G  I  E  F  Y  V  L  Q  N  S  H  Y  C  I  L  R  P  F  I  S  *  N  N  F  L  V  I  L  P  V  K  L  N  P  A  T  L  F  F  *  E  T  *  S  F  A  F  V  N  S  D  K  Y  I  L  H  L  K  E  V  G  E  M  D  S  N  S  Y  F  C  I  R  N  F  V  C  Q  Q  A  F  N  R  N  P  E  I  S  Q  H  W  * </first_frame>
            <second_frame>  S  F  L  *  K  K  R  S  K  Q  A  S  K  R  G  T  V  N  Q  S  S  V  V  Q  *  T  R  R  Q  W  P  A  Q  H  L  Y  L  S  V  L  L  L  S  S  P  T  V  P  I  L  P  V  F  L  L  P  P  P  L  V  S  S  P  V  G  P  A  C  G  P  I  R  S  L  Y  P  F  P  F  L  H  L  R  R  F  R  D  D  V  L  G  D  W  W  L  L  L  L  P  I  I  T  L  H  L  G  S  Q  N  L  L  T  V  K  T  S  R  L  L  I  E  G  *  L  D  S :   I  T  L  M  S  T  R  N  L  M  H  Q  K  S  L  R  R  L  K  M  L  M  R :   Y  Y  Q  M  T  K  K  E  H  Y  M  I  N  M  V  K  P  G  *  K  V  L  *  G  P  K  P  V  L  T  R :   Q  I  L  L  I  Y  L  R  H  S  L  D  L  L  W  V  V  L  E  W  M  E  L  D  L  E  R  V  A  A  V  L  L  P  R  V  K  I  Y   : V  T  T  *  H  *  N  F  Q  R  L  S  L  E  L  K  K  I  S  S  F  H  I  L  K  L  V  R  S  V  W  E  L  G  Q  R  *  A  P  K  *  G  Y  V  Q  L  V  V  A  E  V  K  L  *  G  P  N  K  H  R  L  A  C  F  L  R :   F  L  S  A  Q  T  V  V  G  M  V  K  *  S  L  N  I  V  V  N  A  Q  A  R  G  G  Y  E  *  R  K  I  *  K  S  R  Y  P  L  E  *  T  R  E  V  S  S  E  L  L  V  R  V  M  Q  V  L  G   : V  P  H  R  E  I  F  M  S  I  L  T  L  K  R  Y  L  R  S  K  E  M  A  *  I  *  F  Q  Q  F  Q  S  V  I  *  M  L  Y  L  G  L  L  L  R :   L  K  Q  W  M  V  *  L  I  S  R  F  L  Q  A  L  N  L  G  M  C  L  S  W  Q  G  K  E  H  Q  S  *  I  S  H  Q  Y  A  V  I  T  C  S  R  L  K  L  A  Y  Q  N  A  S   : V  *  W  S  V  N  C  L  K  N  L  L  L  L  L  R  D  Q  A  L  V  Q  K  L  A  R  R  F  S  K  R  :  Q  K  L  L  K  L  Q  *  V  Q  I  Q  V  Q  Q  K  L  M  S  H  H  Q  K  I  E  T  I  H  *  R  S  *  Q  I  L  L   : G  L  S  *  M  V  H  *  N  G  *  E  T  T  C  S  T  W  C  W  D  T  A  S  A  I  F  F  Y  T  T  M  A  L  N  F  M  C  F  K  T  A  I  I  A  S  C  G  L  S  F  L  R  I  T  F  W  *  F  C  L  *  N  *  I  Q  P  P  Y  S  F  R  K  P  N  P  S  P  L  *  I  L  T  N  I  F  S  T  S  K  K  L  V  R  W  I  L  T  A  I  F  V  *  E  I  L  Y  V  S  K  H  L  T  E  T  Q  K  Y  P  N  I  G   </second_frame>
            <third_frame>   L  S  C  E  K  K  E  A  S  K  H  Q  N  A  G  Q  L  T  S  L  L  *  S  N  E  L  D  G  N  G  Q  H  S  I  S  I  S  P  S  F  F  S  H  L  R  P  F  P  F  S  L  S  S  S  F  L  L  L  *  F  L  L  R  W  D  P  L  V  G  P  Y  E  V  Y  I  H  F  L  F  F  I  S  E  D  S  G  T  T  F  W  E  I  G  G  C  C  C  C  R  L  L  L  Y  T  W  G  P  K  I  C  *  Q  *  R  H  Q  G  C  L  S  K  V  S  S  T   : V  S  P  *  C  Q  Q  G  T  *  C  T  R  K  V  *  G  D  *  R  C  L  *   : D  T  I  R  *  Q  K  K  S  T  I  *  S  I  W  *  S  R  G  E  K  F  C  R  G  P  S  R  C  L  H   : D  K  S  F  *  S  I  *  D  I  L  W  T  F  Y  G  W  F  W  N  G  W  S  W  I  W  N  A  S  P  Q  Y  C  Y  Q  G  *  R  S  T  :  L  R  H  D  I  R  I  F  S  G  Y  L  W  S  *  K  R  F  R  A  F  T  S  *  N  L  *  G  L  C  G  N  W  G  K  G  R  L  Q  N  E  D  M  F  N  L  W  W  P  R  S  S  Y  E  D  R  T  N  T  V  W  H  V  F  S   : G  F  C  L  P  K  L  W  W  G  W  *  N  D  L  *  I  L  S  *  M  L  R  R  G  A  D  T  S  E  E  R  Y  K  S  Q  D  T  P  W  S  K  Q  G  K  Y  P  Q  S  C  W  *  G  *  C  R  S  *  G  :  C  P  T  G  R  S  L  C  L  S  *  H  *  R  D  T  *  D  P  K  R  W  H  K  S  D  F  N  S  F  S  R  L  S  R  C  Y  T  W  G  C  C  *   : G  *  N  S  G  W  F  D  *  S  P  D  S  S  R  H  S  T  W  G  C  A  C  L  G  K  E  R  S  T  K  A  K  *  A  I  N  T  R  *  S  L  V  H  D  *  S  *  H  T  K  T  H  Q  :  C  D  G  A  *  I  A  *  R  T  C  F  S  Y  *  G  I  K  H  S  Y  K  N  S  P  G  G  S  A  N  G :   K  S  Y  *  N  S  S  R  F  R  F  K  C  S  K  N  *  *  V  I  I  R  R  S  R  R  S  I  E  E  V  S  K  F  C  W  :  V  C  R  K  W  C  T  E  M  V  K  R  Q  P  V  V  L  G  A  G  I  L  P  Q  Q  S  S  F  I  R  Q  W  H  *  I  L  C  A  S  K  Q  P  L  L  H  L  A  A  F  H  F  L  E  *  L  F  G  D  S  A  C  K  I  E  S  S  H  L  I  L  L  G  N  L  I  L  R  L  C  K  F  *  Q  I  Y  S  P  P  Q  R  S  W  *  D  G  F  *  Q  L  F  L  Y  K  K  F  C  M  S  A  S  I  *  Q  K  P  R  N  I  P  T  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44700" stop="45023"/>
                    <exon start="45574" stop="45642"/>
                    <exon start="46021" stop="46113"/>
                    <exon start="47274" stop="47392"/>
                    <exon start="48153" stop="48348"/>
                    <exon start="49810" stop="49985"/>
                    <exon start="51437" stop="51566"/>
                    <exon start="52155" stop="52315"/>
                    <exon start="53447" stop="53538"/>
                    <exon start="54701" stop="54809"/>
                    <exon start="55183" stop="55228"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVFCSPMNSTAMASTASLSLRPSSLISDRSHSPCLPPSSSSSFFSGGTRLWAHTKFISISFSSSQKIPGRRFGRLVVAAAADYYSTLGVPKSANSKDIKAAYRRLARQYHPDVNKEPNAPEKFKEIKDAYEILSDDKKRALYDQYGEAGVKSSVGAQAGAYTTNPFDLFETFFGPSMGGFGMDGAGFGTRRRSTVTKGEDLRYDMTLEFSAAIFGAEKDFELSHLETCEVCVGTGAKVGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSVCPNCGGDGEMISEYCRKCSGEGRIRVKKDIKVKIPPGVNKGSILRVAGEGDAGPRGAPPGDLYVYLDIEEIPEIQRDGINLISTVSVGYLDAILGAVVKVKTVDGLTDLQIPPGTQPGDVLVLARKGAPKLNKPSIRGDHLFTIKVSIPKRISVMERELLEELASLTKGSSTRTKTRPAVQQTAKVTETPVGSDSSAAKTDESSSEDRDDPLKKLANFAGSVVNGALKWLRDNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56487" PGL_stop="55823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56487" e_stop="56246"/>
            <exon e_start="56177" e_stop="55823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56487" e_stop="56246" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56245" i_stop="56178" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56177" e_stop="55823" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56487" stop="56246"/>
              <exon start="56177" stop="55836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56487" stop="56246"/>
              <exon start="56177" stop="55838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56487" stop="56246"/>
              <exon start="56177" stop="55910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56470" stop="56246"/>
              <exon start="56177" stop="55837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56461" stop="56246"/>
              <exon start="56177" stop="55834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56461" stop="56246"/>
              <exon start="56177" stop="55834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56167" stop="55823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281077" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCTGAGAACATGGAAGCTACCGCAATGCGACCAAACGCTGCCAAGCTTCTGGTGAACTGCTCAACGCCGGTGTCATTTCTTCAGCCGCCGTCTGCTGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAG : GAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCT</gDNA_template>
            <first_frame> F  L  L  R  T  W  K  L  P  Q  C  D  Q  T  L  P  S  F  W  *  T  A  Q  R  R  C  H  F  F  S  R  R  L  L  P  E  L  S  S  S  F  Q  N  M  F  D  *  L  P  H  L  R  R  S  *  L  P  E  L  P  T  L  K  L  T  K  Q  V  R  A  L  M  N  L  A  F  L  S  Y  R  R :   R  I  R  I  F  W  *  N  W  E  *  V  Q  W  R  E  E  Q  R  *  S  T  E  V  *  F  S  Q  R  *  Q  H  Q  T  F  H  *  L  C  L  *  *  Q  L  R  *  L  L  R  W  C  Y  Y  S  Y  K  A  V  Q  I  Q  L  L  R  E  Q  S  S  S  S  S  V  L  R  T  S  Q  I  C  T  R  *  F  L  Y  I  L  S  W  I  L  *  L  L  C  H  N  *  I  F  T  H  V  *  *  N  L  K  L  H  I  Y  K  I  Q  V  Q  S </first_frame>
            <second_frame>  F  F  *  E  H  G  S  Y  R  N  A  T  K  R  C  Q  A  S  G  E  L  L  N  A  G  V  I  S  S  A  A  V  C  C  R  S  C  L  P  R  S  K  I  C  S  I  D  F  L  I  *  D  V  H  D  C  P  S  F  R  P  *  N  *  P  S  K  S  E  H  *  *  T  W  P  S  F  P  T  A   : G  G  F  E  F  F  G  E  T  G  S  R  F  S  G  G  R  S  S  D  K  V  R  K  C  N  F  L  R  D  N  N  T  K  H  F  I  S  S  V  Y  D  N  S  S  D  D  C  C  G  G  A  I  I  L  T  K  P  Y  R  F  N  F  C  V  N  K  A  L  L  L  L  Y  *  G  H  L  K  F  V  P  D  D  F  Y  T  F  F  P  G  F  C  S  S  C  V  T  I  K  Y  L  H  M  F  N  K  T  L  N  Y  I  Y  I  R  S  K  Y  N   </second_frame>
            <third_frame>   S  S  E  N  M  E  A  T  A  M  R  P  N  A  A  K  L  L  V  N  C  S  T  P  V  S  F  L  Q  P  P  S  A  A  G  V  V  F  L  V  P  K  Y  V  R  L  T  S  S  F  K  T  F  M  I  A  R  A  S  D  P  K  T  D  Q  A  S  P  S  T  D  E  P  G  L  P  F  L  P  Q  :  E  D  S  N  F  L  V  K  L  G  V  G  S  V  A  G  G  A  A  I  K  Y  G  S  V  I  F  S  E  I  T  T  P  N  I  S  L  A  L  F  M  I  T  A  P  M  I  V  A  V  V  L  L  F  L  Q  S  R  T  D  S  T  S  A  *  T  K  L  F  F  F  C  T  K  D  I  S  N  L  Y  Q  M  I  F  I  H  S  F  L  D  F  V  A  P  V  S  Q  L  N  I  Y  T  C  L  I  K  P  *  I  T  Y  I  *  D  P  S  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56485" stop="56246"/>
                    <exon start="56177" stop="55983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSENMEATAMRPNAAKLLVNCSTPVSFLQPPSAAGVVFLVPKYVRLTSSFKTFMIARASDPKTDQASPSTDEPGLPFLPQEDSNFLVKLGVGSVAGGAAIKYGSVIFSEITTPNISLALFMITAPMIVAVVLLFLQSRTDSTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57136" PGL_stop="58451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57136" e_stop="57437"/>
            <exon e_start="58025" e_stop="58124"/>
            <exon e_start="58298" e_stop="58451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.542" acc_prob="0.992" e_score="0.990"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57136" e_stop="57437" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57438" i_stop="58024" i_length="587"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="58025" e_stop="58124" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.542" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58125" i_stop="58297" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="58298" e_stop="58451" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57136" stop="57437"/>
              <exon start="58025" stop="58124"/>
              <exon start="58298" stop="58451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTGGCATTCACAAACATTGAAGTTCCTTCATAATCCTGTTGATTTCGTTAATCGATCTCCGTCAAGATGGTGTTAGCACAATTAGGGGGGAGCATCTCGCGTGCTCTCCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTCCTCAACGAGTGCCTCAATGAGATCACCCGTGCTCTTCTACAGGCCGATGTTCAATTTAAGCTAGTTCGTGATATGTCAACAAATATCAAGAAGATTGTCAATCTTGAAGATCTTGCCGCTGGACACAACAAGCGTAGGATTATTCAACAG : GCTGTGTATAATGAGCTCTGCAAGATATTGGATCCTGGGAAACCTGCATTTACACTTAAAAAAGGGAAACCTAGTGTTGTAATGTTTGTTGGTTTGCAAG : GGTCTGGAAAAACTACAACGTGTACAAAATATGCTTACCACCACCAGAAAAGGGGTTGGAAGCCGGCTCTAGTCTGTGCAGATACCTTCAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCTACAAAAGCTAAAATTCCTTTTTATGGAAG</gDNA_template>
            <first_frame> I  D  W  H  S  Q  T  L  K  F  L  H  N  P  V  D  F  V  N  R  S  P  S  R  W  C  *  H  N  *  G  G  A  S  R  V  L  S  S  R  *  A  M  P  Q  S  S  M  K  R  S  S  T  S  A  S  M  R  S  P  V  L  F  Y  R  P  M  F  N  L  S  *  F  V  I  C  Q  Q  I  S  R  R  L  S  I  L  K  I  L  P  L  D  T  T  S  V  G  L  F  N  R :   L  C  I  M  S  S  A  R  Y  W  I  L  G  N  L  H  L  H  L  K  K  G  N  L  V  L  *  C  L  L  V  C  K  :  G  L  E  K  L  Q  R  V  Q  N  M  L  T  T  T  R  K  G  V  G  S  R  L  *  S  V  Q  I  P  S  E  L  V  L  S  I  N  *  S  R  M  L  Q  K  L  K  F  L  F  M  E  </first_frame>
            <second_frame>  S  I  G  I  H  K  H  *  S  S  F  I  I  L  L  I  S  L  I  D  L  R  Q  D  G  V  S  T  I  R  G  E  H  L  A  C  S  P  A  D  E  Q  C  H  N  H  R  *  K  G  P  Q  R  V  P  Q  *  D  H  P  C  S  S  T  G  R  C  S  I  *  A  S  S  *  Y  V  N  K  Y  Q  E  D  C  Q  S  *  R  S  C  R  W  T  Q  Q  A  *  D  Y  S  T   : G  C  V  *  *  A  L  Q  D  I  G  S  W  E  T  C  I  Y  T  *  K  R  E  T  *  C  C  N  V  C  W  F  A  R :   V  W  K  N  Y  N  V  Y  K  I  C  L  P  P  P  E  K  G  L  E  A  G  S  S  L  C  R  Y  L  Q  S  W  C  F  R  S  I  E  A  E  C  Y  K  S  *  N  S  F  L  W  K </second_frame>
            <third_frame>   R  L  A  F  T  N  I  E  V  P  S  *  S  C  *  F  R  *  S  I  S  V  K  M  V  L  A  Q  L  G  G  S  I  S  R  A  L  Q  Q  M  S  N  A  T  I  I  D  E  K  V  L  N  E  C  L  N  E  I  T  R  A  L  L  Q  A  D  V  Q  F  K  L  V  R  D  M  S  T  N  I  K  K  I  V  N  L  E  D  L  A  A  G  H  N  K  R  R  I  I  Q  Q  :  A  V  Y  N  E  L  C  K  I  L  D  P  G  K  P  A  F  T  L  K  K  G  K  P  S  V  V  M  F  V  G  L  Q   : G  S  G  K  T  T  T  C  T  K  Y  A  Y  H  H  Q  K  R  G  W  K  P  A  L  V  C  A  D  T  F  R  A  G  A  F  D  Q  L  K  Q  N  A  T  K  A  K  I  P  F  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57192" stop="57437"/>
                    <exon start="58025" stop="58124"/>
                    <exon start="58298" stop="58449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISVKMVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59194" PGL_stop="64550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59194" e_stop="59255"/>
            <exon e_start="59319" e_stop="59467"/>
            <exon e_start="60212" e_stop="60312"/>
            <exon e_start="60411" e_stop="60568"/>
            <exon e_start="63802" e_stop="63916"/>
            <exon e_start="64018" e_stop="64550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59194" e_stop="59255" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59256" i_stop="59318" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59319" e_stop="59467" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59468" i_stop="60211" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60212" e_stop="60312" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60313" i_stop="60410" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60411" e_stop="60568" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60569" i_stop="63801" i_length="3233"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63802" e_stop="63916" e_length="115"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63917" i_stop="64017" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="64018" e_stop="64550" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59194" stop="59255"/>
              <exon start="59319" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59202" stop="59255"/>
              <exon start="59319" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59241" stop="59255"/>
              <exon start="59319" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59363" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59370" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59370" stop="59467"/>
              <exon start="60212" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60224" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60251" stop="60312"/>
              <exon start="60411" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60424" stop="60568"/>
              <exon start="63802" stop="63916"/>
              <exon start="64018" stop="64550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGGCGCCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGACAAGTTTCTGAAGCAACG : AAACCGGATCTCGTGATTTTTGTTATGGATAGTAGTATTGGACAAGCTGCTTTTGATCAAGCTCAAGCATTTCGACAAAGTGTTGCGGTTGGAGCCGTGATTGTTACTAAGATGGATGGCCATGCAAAAGGAGGTGGTGCCCTAAGTGC : AGTTGCTGCAACTAAAAGTCCAGTCATATTTATTGGAACTGGTGAACACATGGACGAGTTTGAAGTTTTTGATGTTAAACCATTTGTCAGCCGTCTTTTAG : GCATGGGTGACTTGTCTGGATTGGTGAACAAGATACAAGATGTGGTCCCAATGGATCAACAGCCTGAGCTTCTTCAGAAGTTATCAGAAGGACATTTTACCTTGAGGATCATGTACGAGCAATTTCAGAGCATGCTTAAAATGGGTCCCCTTGGACAG : GTTTTTTCAATGCTTCCTGGATTTAGTGCAGAGATGATGCCACAAGGTCGTGAAAAGGAAAGTCAAGCAAAGTTTAAAAGGTATATGACAATGATGGACTCCATGACTGATGAAG : AATTGGGCAGTACCAATCCAAAGATTTTGACTGAATCTCGGATCATGCGTATAGCTAGGGGATCTGGCCGCCTCGTGCATGAGGTGATGGAGATGTTGGAAGAATACAAACGACTTGCCAAAATATTCAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGATATGAGCTCCCTGTCGAGAAACATGAATGCACAAAACATGAGCAAAGTCCTCCCCCCTCAGATGTTGAAGCAGATCGGTGGAATGGGTGGTTTGCAGAACTTAATGAAGCAAATGGGTTCCGCCAAGGACATGATGGGTATGTTTGGTGGTGGTGGTGGAGAGTAATAATGGAATCACAATTGAACTACAGTTTACGTCGTCAATTCATAGTTGGTGGAAATAGCATGTAACCAAATCTCTGTCACTCCCTATCTTTCAAATTTTGAATCTGATGCATTTGGTAAATTTATTTGATTCAGAATGAAACACTGTATGGTTTTGATGCTCCACTTCATGCTATGCTTGTATGACATGATCTCTTCATAC</gDNA_template>
            <first_frame> V  G  A  T  N  K  K  Q  L  F  L  K  K  C  D  K  F  L  K  Q  R :   N  R  I  S  *  F  L  L  W  I  V  V  L  D  K  L  L  L  I  K  L  K  H  F  D  K  V  L  R  L  E  P  *  L  L  L  R  W  M  A  M  Q  K  E  V  V  P  *  V   : Q  L  L  Q  L  K  V  Q  S  Y  L  L  E  L  V  N  T  W  T  S  L  K  F  L  M  L  N  H  L  S  A  V  F  *  :  A  W  V  T  C  L  D  W  *  T  R  Y  K  M  W  S  Q  W  I  N  S  L  S  F  F  R  S  Y  Q  K  D  I  L  P  *  G  S  C  T  S  N  F  R  A  C  L  K  W  V  P  L  D  R :   F  F  Q  C  F  L  D  L  V  Q  R  *  C  H  K  V  V  K  R  K  V  K  Q  S  L  K  G  I  *  Q  *  W  T  P  *  L  M  K  :  N  W  A  V  P  I  Q  R  F  *  L  N  L  G  S  C  V  *  L  G  D  L  A  A  S  C  M  R  *  W  R  C  W  K  N  T  N  D  L  P  K  Y  S  A  R  *  R  V  L  R  F  Q  R  R  E  I  *  A  P  C  R  E  T  *  M  H  K  T  *  A  K  S  S  P  L  R  C  *  S  R  S  V  E  W  V  V  C  R  T  *  *  S  K  W  V  P  P  R  T  *  W  V  C  L  V  V  V  V  E  S  N  N  G  I  T  I  E  L  Q  F  T  S  S  I  H  S  W  W  K  *  H  V  T  K  S  L  S  L  P  I  F  Q  I  L  N  L  M  H  L  V  N  L  F  D  S  E  *  N  T  V  W  F  *  C  S  T  S  C  Y  A  C  M  T  *  S  L  H   </first_frame>
            <second_frame>  W  A  P  Q  T  R  S  S  S  F  *  R  N  A  T  S  F  *  S  N   : E  T  G  S  R  D  F  C  Y  G  *  *  Y  W  T  S  C  F  *  S  S  S  S  I  S  T  K  C  C  G  W  S  R  D  C  Y  *  D  G  W  P  C  K  R  R  W  C  P  K  C  :  S  C  C  N  *  K  S  S  H  I  Y  W  N  W  *  T  H  G  R  V  *  S  F  *  C  *  T  I  C  Q  P  S  F  R :   H  G  *  L  V  W  I  G  E  Q  D  T  R  C  G  P  N  G  S  T  A  *  A  S  S  E  V  I  R  R  T  F  Y  L  E  D  H  V  R  A  I  S  E  H  A  *  N  G  S  P  W  T   : G  F  F  N  A  S  W  I  *  C  R  D  D  A  T  R  S  *  K  G  K  S  S  K  V  *  K  V  Y  D  N  D  G  L  H  D  *  *  R :   I  G  Q  Y  Q  S  K  D  F  D  *  I  S  D  H  A  Y  S  *  G  I  W  P  P  R  A  *  G  D  G  D  V  G  R  I  Q  T  T  C  Q  N  I  Q  Q  D  E  G  S  *  D  S  K  E  G  R  Y  E  L  P  V  E  K  H  E  C  T  K  H  E  Q  S  P  P  P  S  D  V  E  A  D  R  W  N  G  W  F  A  E  L  N  E  A  N  G  F  R  Q  G  H  D  G  Y  V  W  W  W  W  W  R  V  I  M  E  S  Q  L  N  Y  S  L  R  R  Q  F  I  V  G  G  N  S  M  *  P  N  L  C  H  S  L  S  F  K  F  *  I  *  C  I  W  *  I  Y  L  I  Q  N  E  T  L  Y  G  F  D  A  P  L  H  A  M  L  V  *  H  D  L  F  I  </second_frame>
            <third_frame>   G  R  H  K  Q  E  A  A  L  F  E  E  M  R  Q  V  S  E  A  T  :  K  P  D  L  V  I  F  V  M  D  S  S  I  G  Q  A  A  F  D  Q  A  Q  A  F  R  Q  S  V  A  V  G  A  V  I  V  T  K  M  D  G  H  A  K  G  G  G  A  L  S  A :   V  A  A  T  K  S  P  V  I  F  I  G  T  G  E  H  M  D  E  F  E  V  F  D  V  K  P  F  V  S  R  L  L   : G  M  G  D  L  S  G  L  V  N  K  I  Q  D  V  V  P  M  D  Q  Q  P  E  L  L  Q  K  L  S  E  G  H  F  T  L  R  I  M  Y  E  Q  F  Q  S  M  L  K  M  G  P  L  G  Q  :  V  F  S  M  L  P  G  F  S  A  E  M  M  P  Q  G  R  E  K  E  S  Q  A  K  F  K  R  Y  M  T  M  M  D  S  M  T  D  E   : E  L  G  S  T  N  P  K  I  L  T  E  S  R  I  M  R  I  A  R  G  S  G  R  L  V  H  E  V  M  E  M  L  E  E  Y  K  R  L  A  K  I  F  S  K  M  K  G  L  K  I  P  K  K  G  D  M  S  S  L  S  R  N  M  N  A  Q  N  M  S  K  V  L  P  P  Q  M  L  K  Q  I  G  G  M  G  G  L  Q  N  L  M  K  Q  M  G  S  A  K  D  M  M  G  M  F  G  G  G  G  G  E  *  *  W  N  H  N  *  T  T  V  Y  V  V  N  S  *  L  V  E  I  A  C  N  Q  I  S  V  T  P  Y  L  S  N  F  E  S  D  A  F  G  K  F  I  *  F  R  M  K  H  C  M  V  L  M  L  H  F  M  L  C  L  Y  D  M  I  S  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59196" stop="59255"/>
                    <exon start="59319" stop="59467"/>
                    <exon start="60212" stop="60312"/>
                    <exon start="60411" stop="60568"/>
                    <exon start="63802" stop="63916"/>
                    <exon start="64018" stop="64349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLGQVFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELGSTNPKILTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGGGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67014" PGL_stop="64923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67014" e_stop="66831"/>
            <exon e_start="66744" e_stop="66502"/>
            <exon e_start="66279" e_stop="66061"/>
            <exon e_start="65177" e_stop="64923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.107" e_score="0.946"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="67014" e_stop="66831" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.107">
            <gDNA_intron_boundary i_start="66830" i_stop="66745" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="66744" e_stop="66502" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="66501" i_stop="66280" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66279" e_stop="66061" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66060" i_stop="65178" i_length="883"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65177" e_stop="64923" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67014" stop="66831"/>
              <exon start="66744" stop="66502"/>
              <exon start="66279" stop="66061"/>
              <exon start="65177" stop="64923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66909" stop="66831"/>
              <exon start="66744" stop="66502"/>
              <exon start="66279" stop="66061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGTGGACTTACACAGGTCAAAGATTTGGAAATTGAGCTTGATTCCCTAAAACAGAGTGGCCAAGAGAACCTGCAGCAAGCAGTTCTAACTGAGAAGGAAAAATTTACTGAAATGCAATGGGATATGGAGGAACTTAGAAGAAAGTGTGTGGAGATGGAATTGAAGCTGGCGGCTGAACAG : GCTGACAAGATTCGGATGGAATCAACTCAAAGAATCATAGTACAAGAGAATGAAAGACTGTACCAAGAATTGGATGCTGCTCAACAGCAGAACAATAGCTTGCAGAAACTCCATTTGGAGTTGGAGTCGAAGTCCAACACAGATGTCAAACTTTTAGTCAAGGAGGTTAAATCTTTACGAAGTTCCCACTCAGAACTCAAGCAGGAGCTCAGCAACTTGGCTAAATAGAAGGCAGAAGTTGAA : ATGATTTTACGGGAGGAAAGGCAAACTAGGGAACATGCTACCGCTGCAAATATTAAGCTGCTGCATGAGTATGAAATTCTTCGCAGTAGACTGGAGGAATGCAGTGTCAGTTTTCTCATCGAGGAAGAAAATAAACTGGTTCTGAATGCTTCTATCCCTTCGGATGCCATTGATATGCTGTCAACATCTGATGATCGAATAGGTCTACTTCTTGCAGAG : GCCCAGATCCTAGCACAAGATGTTGAAACTACTGTTGCTGGTGGAAATCTTGATGGAGAATATTCATGCACAACAGTGGATGAATTGAGGAAACAACTAGCTGATGTGTATGTTGACAATGCCAAATTGAGGAAACAGATGAATTCTGTCATTCGTTATGCACTACAAACAGCTAGTAGGTCAAAGGACAATGAGGAAGAGAACCCTTCTACAAAGACAGCTCTTACGAAGTCTTTAGATGGATGATTTATAAAA</gDNA_template>
            <first_frame> H  L  W  T  Y  T  G  Q  R  F  G  N  *  A  *  F  P  K  T  E  W  P  R  E  P  A  A  S  S  S  N  *  E  G  K  I  Y  *  N  A  M  G  Y  G  G  T  *  K  K  V  C  G  D  G  I  E  A  G  G  *  T   : G  *  Q  D  S  D  G  I  N  S  K  N  H  S  T  R  E  *  K  T  V  P  R  I  G  C  C  S  T  A  E  Q  *  L  A  E  T  P  F  G  V  G  V  E  V  Q  H  R  C  Q  T  F  S  Q  G  G  *  I  F  T  K  F  P  L  R  T  Q  A  G  A  Q  Q  L  G  *  I  E  G  R  S  *   : N  D  F  T  G  G  K  A  N  *  G  T  C  Y  R  C  K  Y  *  A  A  A  *  V  *  N  S  S  Q  *  T  G  G  M  Q  C  Q  F  S  H  R  G  R  K  *  T  G  S  E  C  F  Y  P  F  G  C  H  *  Y  A  V  N  I  *  *  S  N  R  S  T  S  C  R   : G  P  D  P  S  T  R  C  *  N  Y  C  C  W  W  K  S  *  W  R  I  F  M  H  N  S  G  *  I  E  E  T  T  S  *  C  V  C  *  Q  C  Q  I  E  E  T  D  E  F  C  H  S  L  C  T  T  N  S  *  *  V  K  G  Q  *  G  R  E  P  F  Y  K  D  S  S  Y  E  V  F  R  W  M  I  Y  K  </first_frame>
            <second_frame>  I  C  G  L  T  Q  V  K  D  L  E  I  E  L  D  S  L  K  Q  S  G  Q  E  N  L  Q  Q  A  V  L  T  E  K  E  K  F  T  E  M  Q  W  D  M  E  E  L  R  R  K  C  V  E  M  E  L  K  L  A  A  E  Q  :  A  D  K  I  R  M  E  S  T  Q  R  I  I  V  Q  E  N  E  R  L  Y  Q  E  L  D  A  A  Q  Q  Q  N  N  S  L  Q  K  L  H  L  E  L  E  S  K  S  N  T  D  V  K  L  L  V  K  E  V  K  S  L  R  S  S  H  S  E  L  K  Q  E  L  S  N  L  A  K  *  K  A  E  V  E  :  M  I  L  R  E  E  R  Q  T  R  E  H  A  T  A  A  N  I  K  L  L  H  E  Y  E  I  L  R  S  R  L  E  E  C  S  V  S  F  L  I  E  E  E  N  K  L  V  L  N  A  S  I  P  S  D  A  I  D  M  L  S  T  S  D  D  R  I  G  L  L  L  A  E  :  A  Q  I  L  A  Q  D  V  E  T  T  V  A  G  G  N  L  D  G  E  Y  S  C  T  T  V  D  E  L  R  K  Q  L  A  D  V  Y  V  D  N  A  K  L  R  K  Q  M  N  S  V  I  R  Y  A  L  Q  T  A  S  R  S  K  D  N  E  E  E  N  P  S  T  K  T  A  L  T  K  S  L  D  G  *  F  I  K </second_frame>
            <third_frame>   F  V  D  L  H  R  S  K  I  W  K  L  S  L  I  P  *  N  R  V  A  K  R  T  C  S  K  Q  F  *  L  R  R  K  N  L  L  K  C  N  G  I  W  R  N  L  E  E  S  V  W  R  W  N  *  S  W  R  L  N  R :   L  T  R  F  G  W  N  Q  L  K  E  S  *  Y  K  R  M  K  D  C  T  K  N  W  M  L  L  N  S  R  T  I  A  C  R  N  S  I  W  S  W  S  R  S  P  T  Q  M  S  N  F  *  S  R  R  L  N  L  Y  E  V  P  T  Q  N  S  S  R  S  S  A  T  W  L  N  R  R  Q  K  L  K :   *  F  Y  G  R  K  G  K  L  G  N  M  L  P  L  Q  I  L  S  C  C  M  S  M  K  F  F  A  V  D  W  R  N  A  V  S  V  F  S  S  R  K  K  I  N  W  F  *  M  L  L  S  L  R  M  P  L  I  C  C  Q  H  L  M  I  E  *  V  Y  F  L  Q  R :   P  R  S  *  H  K  M  L  K  L  L  L  L  V  E  I  L  M  E  N  I  H  A  Q  Q  W  M  N  *  G  N  N  *  L  M  C  M  L  T  M  P  N  *  G  N  R  *  I  L  S  F  V  M  H  Y  K  Q  L  V  G  Q  R  T  M  R  K  R  T  L  L  Q  R  Q  L  L  R  S  L  *  M  D  D  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66516" stop="66502"/>
                    <exon start="66279" stop="66061"/>
                    <exon start="65177" stop="64932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAEVEMILREERQTREHATAANIKLLHEYEILRSRLEECSVSFLIEEENKLVLNASIPSDAIDMLSTSDDRIGLLLAEAQILAQDVETTVAGGNLDGEYSCTTVDELRKQLADVYVDNAKLRKQMNSVIRYALQTASRSKDNEEENPSTKTALTKSLDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67013" stop="66831"/>
                    <exon start="66744" stop="66517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICGLTQVKDLEIELDSLKQSGQENLQQAVLTEKEKFTEMQWDMEELRRKCVEMELKLAAEQADKIRMESTQRIIVQENERLYQELDAAQQQNNSLQKLHLELESKSNTDVKLLVKEVKSLRSSHSELKQELSNLAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71223" PGL_stop="71912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71223" e_stop="71486"/>
            <exon e_start="71902" e_stop="71912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.902"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="71223" e_stop="71486" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71487" i_stop="71901" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="71902" e_stop="71912" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71223" stop="71486"/>
              <exon start="71902" stop="71912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAGGCACAGGTGTACGATAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGCTGCTTATCTCTTAAAG : AGAATGAATAC</gDNA_template>
            <first_frame> V  Q  A  Q  V  Y  D  R  A  T  S  S  L  L  Q  L  S  G  R  Q  H  S  S  G  V  W  *  V  L  M  P  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  R  L  C  I  G  A  I  L  A  D  I  Q  L  I  F  N  E  L  F  L  S  A  A  Y  L  L  K  :  R  M  N   </first_frame>
            <second_frame>  C  R  H  R  C  T  I  E  L  Q  V  L  C  C  S  Y  L  D  V  S  I  H  P  E  F  G  R  S  L  C  L  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  V  G  H  V  P  L  A  F  L  S  C  F  G  S  D  F  V  L  V  L  F  W  P  I  Y  N  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  *  R :   E  *  I  </second_frame>
            <third_frame>   A  G  T  G  V  R  *  S  Y  K  F  F  V  A  A  I  W  T  S  A  F  I  R  S  L  V  G  P  Y  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  W  G  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  I  N  I  *  *  I  I  S  F  S  C  L  S  L  K   : E  N  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0157P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="102954" PGL_stop="100344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102954" e_stop="102389"/>
            <exon e_start="101927" e_stop="101737"/>
            <exon e_start="101598" e_stop="101341"/>
            <exon e_start="101187" e_stop="101082"/>
            <exon e_start="100827" e_stop="100742"/>
            <exon e_start="100645" e_stop="100344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102954" e_stop="102389" e_length="566"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="102388" i_stop="101928" i_length="461"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101737" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101736" i_stop="101599" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101598" e_stop="101341" e_length="258"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="101340" i_stop="101188" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101187" e_stop="101082" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.767">
            <gDNA_intron_boundary i_start="101081" i_stop="100828" i_length="254"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100827" e_stop="100742" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.962">
            <gDNA_intron_boundary i_start="100741" i_stop="100646" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100645" e_stop="100344" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102954" stop="102468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102942" stop="102389"/>
              <exon start="101927" stop="101737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102905" stop="102404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102463" stop="102389"/>
              <exon start="101927" stop="101737"/>
              <exon start="101598" stop="101353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102436" stop="102389"/>
              <exon start="101927" stop="101737"/>
              <exon start="101598" stop="101341"/>
              <exon start="101187" stop="101082"/>
              <exon start="100827" stop="100764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101538" stop="101341"/>
              <exon start="101187" stop="101082"/>
              <exon start="100827" stop="100742"/>
              <exon start="100645" stop="100344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101177" stop="101082"/>
              <exon start="100827" stop="100742"/>
              <exon start="100645" stop="100358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101176" stop="101082"/>
              <exon start="100827" stop="100742"/>
              <exon start="100645" stop="100346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101176" stop="101082"/>
              <exon start="100827" stop="100742"/>
              <exon start="100645" stop="100359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTATCTAACTCCATTTCTCCTTTCTTTGCTAATCCACCTAATTTTCCTGTAACCCATGTCACAAATGTACCTTTCTTGAACCACAATCCATCTTTTCCCGCCAGAAAATCAGGGAATTTTTGCCTCAATGCCAAGAAAAAAAATCCATGGCTTGACCCTTTTGACTATGGTGATGATCCTGAAATGGAATATGGTTCACTTTTTTCTGAAGGGAAACAAGATGAAGATCCAAGGCCACCTGATAATCCTGATAACCCATATGGATTTCTCAAATTCCCAATGGGATACTCTGTTGAGATTGCTTCGTTGGGTTTGAAAATTAGAGGTGATGTTCGGAGATGTTGTTGTGTTATTGATGGTGGGGTTTATGAGAATTTGCTGTTCTTTCCAGTAATTCAGATGATTAAGGATAGGTACCCTGGTGTTCAAGTGGATATACTTGCAACAGCCAGGGGAAAACAGACATTTGAGATGAATAAAAATGTGAGGTGGGCTAATGCCTATGATCTGGATGATGATTTTCCTGAACCAGCTGAGTATACGGATATGCTTGGAATTCTTAAG : AGTAGGTACTATGATATGATCTTGTCAACCAAACTGGCAGGGATTGGACATGCAGTATTTTTGTTTATGTCGACTGCTCGTGACAGAGTTAGCTACATTTACCCAAATGTGAATTCTGCAGGAGCAGGATTGTTTCTGTCAGAAACTTTTACACCAGAAAGCATGAACCTCTCCGAGGGCGGATATCATAT : GTACCGTCAGATGGTTGATTGGTTGGGCAGACCAGCTCGTAAAGTACCTCGACAACCTTTACCCCCACTTAAAGTTTCAATCTCAAGAAAGGTTAGGGAGGTTGTAGAGGCAAAATATAAGAATGTTGGTGCACAGAAAGGCAAATATATTGTGATTCATGGGATTAAATCAGATTCAAAAGCTTCTATGCAGTCAAGGGGTGATATTGATAGCTTGCTCCCTATTGAGATTTGGGCTGAGATAGCAGAGGAGATAAG : GGGAGTCAAGCCAGTTTTTGTCATTCCACACGAAAAAGAAAGAGAAAATGTGGAAGATGCAGTTGGTTACGATGCTAGTATAGTGTTCATAACCACCCCTGGACAG : CTTGCTGCTCTTGTTGATGACTCTGCTGGAGTGATAGCTACAAATACAGCTGCGATACAACTTGCTCACGCACGTGGAAAACCAAG : TATTGGGCTATTCTGCTCTGAGGATAAGGCCAGAAGTTTTGTTCCCAATGCAGAAGCAAAGAAATGTGCAACTATTTCATCAAATACTGGAAAATTGGTTGATATTGATGTTGAAGCTGTGAAGAGTGCTGTTCAAATTTTCACCATGCCCCTAGCAATCTTCTAAATATTATACATCCTCCAGTTCTCTTACATATAGTAATTAAGTATTCCTGTAATTGTTACTAGTTCCATTTTCTTCTCAATTGTAATTAATAGAAGCGGAAATATATATATTCGTTCTTTTTTCTCAACAGAAAAGG</gDNA_template>
            <first_frame> Y  Y  L  T  P  F  L  L  S  L  L  I  H  L  I  F  L  *  P  M  S  Q  M  Y  L  S  *  T  T  I  H  L  F  P  P  E  N  Q  G  I  F  A  S  M  P  R  K  K  I  H  G  L  T  L  L  T  M  V  M  I  L  K  W  N  M  V  H  F  F  L  K  G  N  K  M  K  I  Q  G  H  L  I  I  L  I  T  H  M  D  F  S  N  S  Q  W  D  T  L  L  R  L  L  R  W  V  *  K  L  E  V  M  F  G  D  V  V  V  L  L  M  V  G  F  M  R  I  C  C  S  F  Q  *  F  R  *  L  R  I  G  T  L  V  F  K  W  I  Y  L  Q  Q  P  G  E  N  R  H  L  R  *  I  K  M  *  G  G  L  M  P  M  I  W  M  M  I  F  L  N  Q  L  S  I  R  I  C  L  E  F  L  R :   V  G  T  M  I  *  S  C  Q  P  N  W  Q  G  L  D  M  Q  Y  F  C  L  C  R  L  L  V  T  E  L  A  T  F  T  Q  M  *  I  L  Q  E  Q  D  C  F  C  Q  K  L  L  H  Q  K  A  *  T  S  P  R  A  D  I  I   : C  T  V  R  W  L  I  G  W  A  D  Q  L  V  K  Y  L  D  N  L  Y  P  H  L  K  F  Q  S  Q  E  R  L  G  R  L  *  R  Q  N  I  R  M  L  V  H  R  K  A  N  I  L  *  F  M  G  L  N  Q  I  Q  K  L  L  C  S  Q  G  V  I  L  I  A  C  S  L  L  R  F  G  L  R  *  Q  R  R  *   : G  E  S  S  Q  F  L  S  F  H  T  K  K  K  E  K  M  W  K  M  Q  L  V  T  M  L  V  *  C  S  *  P  P  L  D  S :   L  L  L  L  L  M  T  L  L  E  *  *  L  Q  I  Q  L  R  Y  N  L  L  T  H  V  E  N  Q   : V  L  G  Y  S  A  L  R  I  R  P  E  V  L  F  P  M  Q  K  Q  R  N  V  Q  L  F  H  Q  I  L  E  N  W  L  I  L  M  L  K  L  *  R  V  L  F  K  F  S  P  C  P  *  Q  S  S  K  Y  Y  T  S  S  S  S  L  T  Y  S  N  *  V  F  L  *  L  L  L  V  P  F  S  S  Q  L  *  L  I  E  A  E  I  Y  I  F  V  L  F  S  Q  Q  K  R </first_frame>
            <second_frame>  T  I  *  L  H  F  S  F  L  C  *  S  T  *  F  S  C  N  P  C  H  K  C  T  F  L  E  P  Q  S  I  F  S  R  Q  K  I  R  E  F  L  P  Q  C  Q  E  K  K  S  M  A  *  P  F  *  L  W  *  *  S  *  N  G  I  W  F  T  F  F  *  R  E  T  R  *  R  S  K  A  T  *  *  S  *  *  P  I  W  I  S  Q  I  P  N  G  I  L  C  *  D  C  F  V  G  F  E  N  *  R  *  C  S  E  M  L  L  C  Y  *  W  W  G  L  *  E  F  A  V  L  S  S  N  S  D  D  *  G  *  V  P  W  C  S  S  G  Y  T  C  N  S  Q  G  K  T  D  I  *  D  E  *  K  C  E  V  G  *  C  L  *  S  G  *  *  F  S  *  T  S  *  V  Y  G  Y  A  W  N  S  *   : E  *  V  L  *  Y  D  L  V  N  Q  T  G  R  D  W  T  C  S  I  F  V  Y  V  D  C  S  *  Q  S  *  L  H  L  P  K  C  E  F  C  R  S  R  I  V  S  V  R  N  F  Y  T  R  K  H  E  P  L  R  G  R  I  S  Y  :  V  P  S  D  G  *  L  V  G  Q  T  S  S  *  S  T  S  T  T  F  T  P  T  *  S  F  N  L  K  K  G  *  G  G  C  R  G  K  I  *  E  C  W  C  T  E  R  Q  I  Y  C  D  S  W  D  *  I  R  F  K  S  F  Y  A  V  K  G  *  Y  *  *  L  A  P  Y  *  D  L  G  *  D  S  R  G  D  K  :  G  S  Q  A  S  F  C  H  S  T  R  K  R  K  R  K  C  G  R  C  S  W  L  R  C  *  Y  S  V  H  N  H  P  W  T   : A  C  C  S  C  *  *  L  C  W  S  D  S  Y  K  Y  S  C  D  T  T  C  S  R  T  W  K  T  K  :  Y  W  A  I  L  L  *  G  *  G  Q  K  F  C  S  Q  C  R  S  K  E  M  C  N  Y  F  I  K  Y  W  K  I  G  *  Y  *  C  *  S  C  E  E  C  C  S  N  F  H  H  A  P  S  N  L  L  N  I  I  H  P  P  V  L  L  H  I  V  I  K  Y  S  C  N  C  Y  *  F  H  F  L  L  N  C  N  *  *  K  R  K  Y  I  Y  S  F  F  F  L  N  R  K   </second_frame>
            <third_frame>   L  S  N  S  I  S  P  F  F  A  N  P  P  N  F  P  V  T  H  V  T  N  V  P  F  L  N  H  N  P  S  F  P  A  R  K  S  G  N  F  C  L  N  A  K  K  K  N  P  W  L  D  P  F  D  Y  G  D  D  P  E  M  E  Y  G  S  L  F  S  E  G  K  Q  D  E  D  P  R  P  P  D  N  P  D  N  P  Y  G  F  L  K  F  P  M  G  Y  S  V  E  I  A  S  L  G  L  K  I  R  G  D  V  R  R  C  C  C  V  I  D  G  G  V  Y  E  N  L  L  F  F  P  V  I  Q  M  I  K  D  R  Y  P  G  V  Q  V  D  I  L  A  T  A  R  G  K  Q  T  F  E  M  N  K  N  V  R  W  A  N  A  Y  D  L  D  D  D  F  P  E  P  A  E  Y  T  D  M  L  G  I  L  K  :  S  R  Y  Y  D  M  I  L  S  T  K  L  A  G  I  G  H  A  V  F  L  F  M  S  T  A  R  D  R  V  S  Y  I  Y  P  N  V  N  S  A  G  A  G  L  F  L  S  E  T  F  T  P  E  S  M  N  L  S  E  G  G  Y  H  M :   Y  R  Q  M  V  D  W  L  G  R  P  A  R  K  V  P  R  Q  P  L  P  P  L  K  V  S  I  S  R  K  V  R  E  V  V  E  A  K  Y  K  N  V  G  A  Q  K  G  K  Y  I  V  I  H  G  I  K  S  D  S  K  A  S  M  Q  S  R  G  D  I  D  S  L  L  P  I  E  I  W  A  E  I  A  E  E  I  R :   G  V  K  P  V  F  V  I  P  H  E  K  E  R  E  N  V  E  D  A  V  G  Y  D  A  S  I  V  F  I  T  T  P  G  Q  :  L  A  A  L  V  D  D  S  A  G  V  I  A  T  N  T  A  A  I  Q  L  A  H  A  R  G  K  P  S :   I  G  L  F  C  S  E  D  K  A  R  S  F  V  P  N  A  E  A  K  K  C  A  T  I  S  S  N  T  G  K  L  V  D  I  D  V  E  A  V  K  S  A  V  Q  I  F  T  M  P  L  A  I  F  *  I  L  Y  I  L  Q  F  S  Y  I  *  *  L  S  I  P  V  I  V  T  S  S  I  F  F  S  I  V  I  N  R  S  G  N  I  Y  I  R  S  F  F  S  T  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102952" stop="102389"/>
                    <exon start="101927" stop="101737"/>
                    <exon start="101598" stop="101341"/>
                    <exon start="101187" stop="101082"/>
                    <exon start="100827" stop="100742"/>
                    <exon start="100645" stop="100480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNSISPFFANPPNFPVTHVTNVPFLNHNPSFPARKSGNFCLNAKKKNPWLDPFDYGDDPEMEYGSLFSEGKQDEDPRPPDNPDNPYGFLKFPMGYSVEIASLGLKIRGDVRRCCCVIDGGVYENLLFFPVIQMIKDRYPGVQVDILATARGKQTFEMNKNVRWANAYDLDDDFPEPAEYTDMLGILKSRYYDMILSTKLAGIGHAVFLFMSTARDRVSYIYPNVNSAGAGLFLSETFTPESMNLSEGGYHMYRQMVDWLGRPARKVPRQPLPPLKVSISRKVREVVEAKYKNVGAQKGKYIVIHGIKSDSKASMQSRGDIDSLLPIEIWAEIAEEIRGVKPVFVIPHEKERENVEDAVGYDASIVFITTPGQLAALVDDSAGVIATNTAAIQLAHARGKPSIGLFCSEDKARSFVPNAEAKKCATISSNTGKLVDIDVEAVKSAVQIFTMPLAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="105984" PGL_stop="106413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105984" e_stop="106413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="105984" e_stop="106413" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105984" stop="106413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGATCGGACAGTCACCATTTTCTCAATAAATTCTTCTCGCCGATAATGTATCTGCTCTCTCACTCCTTAGGGTTTTAATTCTCTACTTTCCGGTCCATACAATTACAATGCACCTTCTTTTTCCCTTCACTGTCTTGCTCTTCAACCCTAGCTAAGCACAGTTGAAGAAAATTCATGCTAAGTTCAACGAATTTCTAGTTACTAGGAGTTGTAATTGTTTCAATGTCTGGAGGACCTAGGGTTAAATTGATGAACAATGCTGATTCTGAAGTCCGATCAGTGCTCGGGCCGGCGGGTAACAAGGCTAGATCCGTTGAATTACGAAAGCCCGTTGAAAAGCCTGTTAAGAAGGCTGCTGAAAGTGAAGAGTCTAAGGGTAAGAAATTTGAGGGAACGGATTCCGTGCCGCAATCACGGGCGAGGAAATG</gDNA_template>
            <first_frame> P  D  R  T  V  T  I  F  S  I  N  S  S  R  R  *  C  I  C  S  L  T  P  *  G  F  N  S  L  L  S  G  P  Y  N  Y  N  A  P  S  F  S  L  H  C  L  A  L  Q  P  *  L  S  T  V  E  E  N  S  C  *  V  Q  R  I  S  S  Y  *  E  L  *  L  F  Q  C  L  E  D  L  G  L  N  *  *  T  M  L  I  L  K  S  D  Q  C  S  G  R  R  V  T  R  L  D  P  L  N  Y  E  S  P  L  K  S  L  L  R  R  L  L  K  V  K  S  L  R  V  R  N  L  R  E  R  I  P  C  R  N  H  G  R  G  N  </first_frame>
            <second_frame>  Q  I  G  Q  S  P  F  S  Q  *  I  L  L  A  D  N  V  S  A  L  S  L  L  R  V  L  I  L  Y  F  P  V  H  T  I  T  M  H  L  L  F  P  F  T  V  L  L  F  N  P  S  *  A  Q  L  K  K  I  H  A  K  F  N  E  F  L  V  T  R  S  C  N  C  F  N  V  W  R  T  *  G  *  I  D  E  Q  C  *  F  *  S  P  I  S  A  R  A  G  G  *  Q  G  *  I  R  *  I  T  K  A  R  *  K  A  C  *  E  G  C  *  K  *  R  V  *  G  *  E  I  *  G  N  G  F  R  A  A  I  T  G  E  E  M </second_frame>
            <third_frame>   R  S  D  S  H  H  F  L  N  K  F  F  S  P  I  M  Y  L  L  S  H  S  L  G  F  *  F  S  T  F  R  S  I  Q  L  Q  C  T  F  F  F  P  S  L  S  C  S  S  T  L  A  K  H  S  *  R  K  F  M  L  S  S  T  N  F  *  L  L  G  V  V  I  V  S  M  S  G  G  P  R  V  K  L  M  N  N  A  D  S  E  V  R  S  V  L  G  P  A  G  N  K  A  R  S  V  E  L  R  K  P  V  E  K  P  V  K  K  A  A  E  S  E  E  S  K  G  K  K  F  E  G  T  D  S  V  P  Q  S  R  A  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106184" stop="106411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLGVVIVSMSGGPRVKLMNNADSEVRSVLGPAGNKARSVELRKPVEKPVKKAAESEESKGKKFEGTDSVPQSRARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="113376" PGL_stop="114167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113376" e_stop="113376"/>
            <exon e_start="113547" e_stop="114167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.614" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113376" e_stop="113376" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.614" acc_prob="0.911">
            <gDNA_intron_boundary i_start="113377" i_stop="113546" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="113547" e_stop="114167" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113376" stop="113376"/>
              <exon start="113547" stop="114167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210898" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>T : TTAAAATAGACTTCATTTGTATACACAAACGGAAAGGTCTATAAATCAAATTATAAAAATATTTATTTGAGCAAATCCAACACTTTAATTTCAAGGGCCACCAAAAGTCTCAATCTTGTGAGACTGAAAAGGAGCAAACTGAGACCTAACTAATATAGGCTGCTATAGAAAATTAGCCCATCCCATTTTCACGTGCACTTACTAGTCCTACCTACTGGCTACTGTTCTCCCAAAAAAAAAGAAGACAAATATAGTAAACAATATATACAATTTATAACGACATGTCCTAGTGGCTGCCTGTCTTTCTCTGGAACATTTCAATGTGTCAACATAATTTTCGTTTTAATTATTTATCCTTAGTGTTACTATTATTTTGCAAGAATTTTCCTGATATGGCGGCTGCTAAGGCTGCTTGAAAACTTGGATCTTTAGTCAATGATGAAGCCATTTGTTCTATCAAGAAATGTTGAAACTCTGGTCTATTTTGCTGTTGTTGATCAGTTCCTGGTGATTTACGCTTCTGACCACTTGCACTACTTGTACTTGTAATGCTATGAACTTTTTTGATATCATTTTGTAATGTTTTTGGTTCTGCCAAATCAAGAGTTAAGGTTTGTCTTG</gDNA_template>
            <first_frame>  : F  K  I  D  F  I  C  I  H  K  R  K  G  L  *  I  K  L  *  K  Y  L  F  E  Q  I  Q  H  F  N  F  K  G  H  Q  K  S  Q  S  C  E  T  E  K  E  Q  T  E  T  *  L  I  *  A  A  I  E  N  *  P  I  P  F  S  R  A  L  T  S  P  T  Y  W  L  L  F  S  Q  K  K  R  R  Q  I  *  *  T  I  Y  T  I  Y  N  D  M  S  *  W  L  P  V  F  L  W  N  I  S  M  C  Q  H  N  F  R  F  N  Y  L  S  L  V  L  L  L  F  C  K  N  F  P  D  M  A  A  A  K  A  A  *  K  L  G  S  L  V  N  D  E  A  I  C  S  I  K  K  C  *  N  S  G  L  F  C  C  C  *  S  V  P  G  D  L  R  F  *  P  L  A  L  L  V  L  V  M  L  *  T  F  L  I  S  F  C  N  V  F  G  S  A  K  S  R  V  K  V  C  L  </first_frame>
            <second_frame>  :  L  K  *  T  S  F  V  Y  T  N  G  K  V  Y  K  S  N  Y  K  N  I  Y  L  S  K  S  N  T  L  I  S  R  A  T  K  S  L  N  L  V  R  L  K  R  S  K  L  R  P  N  *  Y  R  L  L  *  K  I  S  P  S  H  F  H  V  H  L  L  V  L  P  T  G  Y  C  S  P  K  K  K  E  D  K  Y  S  K  Q  Y  I  Q  F  I  T  T  C  P  S  G  C  L  S  F  S  G  T  F  Q  C  V  N  I  I  F  V  L  I  I  Y  P  *  C  Y  Y  Y  F  A  R  I  F  L  I  W  R  L  L  R  L  L  E  N  L  D  L  *  S  M  M  K  P  F  V  L  S  R  N  V  E  T  L  V  Y  F  A  V  V  D  Q  F  L  V  I  Y  A  S  D  H  L  H  Y  L  Y  L  *  C  Y  E  L  F  *  Y  H  F  V  M  F  L  V  L  P  N  Q  E  L  R  F  V  L </second_frame>
            <third_frame>  :   *  N  R  L  H  L  Y  T  Q  T  E  R  S  I  N  Q  I  I  K  I  F  I  *  A  N  P  T  L  *  F  Q  G  P  P  K  V  S  I  L  *  D  *  K  G  A  N  *  D  L  T  N  I  G  C  Y  R  K  L  A  H  P  I  F  T  C  T  Y  *  S  Y  L  L  A  T  V  L  P  K  K  K  K  T  N  I  V  N  N  I  Y  N  L  *  R  H  V  L  V  A  A  C  L  S  L  E  H  F  N  V  S  T  *  F  S  F  *  L  F  I  L  S  V  T  I  I  L  Q  E  F  S  *  Y  G  G  C  *  G  C  L  K  T  W  I  F  S  Q  *  *  S  H  L  F  Y  Q  E  M  L  K  L  W  S  I  L  L  L  L  I  S  S  W  *  F  T  L  L  T  T  C  T  T  C  T  C  N  A  M  N  F  F  D  I  I  L  *  C  F  W  F  C  Q  I  K  S  *  G  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0157P11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="116021" PGL_stop="113414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116021" e_stop="115867"/>
            <exon e_start="115788" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113589"/>
            <exon e_start="113423" e_stop="113414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.650" e_score="0.997"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116021" e_stop="115867" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115788" e_stop="115726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="114321" e_stop="113589" e_length="733"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.650">
            <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="113423" e_stop="113414" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116021" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116020" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116008" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116006" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116003" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116001" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115993" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115951" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115945" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115937" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115935" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115888" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115749" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115731" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114255" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114161" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114133" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT : AGTTAAAAAA</gDNA_template>
            <first_frame> K  L  Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  :  S  *  K  </first_frame>
            <second_frame>  N  F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : K  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L :   V  K  K </second_frame>
            <third_frame>   T  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I   : *  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115788" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116021" e_stop="115867"/>
            <exon e_start="115788" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116021" e_stop="115867" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115788" e_stop="115726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="114321" e_stop="113580" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116021" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116020" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116008" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116006" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116003" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116001" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115993" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115951" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115945" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115937" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115935" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115888" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115749" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115731" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114231" stop="113580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114213" stop="113583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114210" stop="113580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113868" stop="113580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTTATAGACCTT</gDNA_template>
            <first_frame> K  L  Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  I  D  L </first_frame>
            <second_frame>  N  F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : K  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L  *  T   </second_frame>
            <third_frame>   T  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I  Y  R  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115788" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116021" e_stop="115867"/>
            <exon e_start="115788" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113844"/>
            <exon e_start="113772" e_stop="113764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.901" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116021" e_stop="115867" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115866" i_stop="115789" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115788" e_stop="115726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114321" e_stop="113844" e_length="478"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.901">
            <gDNA_intron_boundary i_start="113843" i_stop="113773" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="113772" e_stop="113764" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116021" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116020" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116016" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116012" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116011" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116010" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116009" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116008" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116006" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116005" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116003" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116001" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115997" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115993" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115951" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115945" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115937" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115935" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115888" stop="115867"/>
              <exon start="115788" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115749" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115731" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115281" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113844"/>
              <exon start="113772" stop="113765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114279" stop="113844"/>
              <exon start="113772" stop="113764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : AAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAG : AACAGTAGC</gDNA_template>
            <first_frame> K  L  Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  :  N  S  S </first_frame>
            <second_frame>  N  F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : K  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R :   T  V   </second_frame>
            <third_frame>   T  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T   : E  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115788" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="116004" e_stop="115867"/>
            <exon e_start="115782" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113589"/>
            <exon e_start="113423" e_stop="113414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.650" e_score="0.997"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116004" e_stop="115867" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.981">
            <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115782" e_stop="115726" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="114321" e_stop="113589" e_length="733"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.650">
            <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="113423" e_stop="113414" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116004" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115749" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115731" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114255" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114161" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114133" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT : AGTTAAAAAA</gDNA_template>
            <first_frame> Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I   : *  L  K   </first_frame>
            <second_frame>  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  :  S  *  K  </second_frame>
            <third_frame>   I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : R  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L :   V  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115782" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="116017" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113589"/>
            <exon e_start="113423" e_stop="113414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.650" e_score="0.997"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116017" e_stop="115726" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="114321" e_stop="113589" e_length="733"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.650">
            <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.700">
            <gDNA_exon_boundary e_start="113423" e_stop="113414" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115726"/>
              <exon start="115626" stop="115381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115726"/>
              <exon start="115626" stop="115505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116017" stop="115726"/>
              <exon start="115626" stop="115549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115749" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115731" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="114946" stop="114830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114255" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114161" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114133" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTCCCCCCCAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCAGTATGTGGAAAGCGATATAATTTTTTTTTTGTTCTCAATATAATTATTTTGATGTGATGATTTGATTTTTCGTTGCAGAAACAGGAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT : AGTTAAAAAA</gDNA_template>
            <first_frame> F  N  S  P  P  I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T  S  M  W  K  A  I  *  F  F  F  C  S  Q  Y  N  Y  F  D  V  M  I  *  F  F  V  A  E  T  G  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L :   V  K  K </first_frame>
            <second_frame>  S  I  P  P  Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  V  C  G  K  R  Y  N  F  F  F  V  L  N  I  I  I  L  M  *  *  F  D  F  S  L  Q  K  Q  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I   : *  L  K   </second_frame>
            <third_frame>   Q  F  P  P  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q  Y  V  E  S  D  I  I  F  F  L  F  S  I  *  L  F  *  C  D  D  L  I  F  R  C  R  N  R  K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  :  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115806" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDFSLQKQEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="115639" e_stop="115258"/>
            <exon e_start="114946" e_stop="114830"/>
            <exon e_start="114321" e_stop="113589"/>
            <exon e_start="113423" e_stop="113414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.650" e_score="0.997"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115639" e_stop="115258" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115257" i_stop="114947" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114946" e_stop="114830" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="114829" i_stop="114322" i_length="508"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="114321" e_stop="113589" e_length="733"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.650">
            <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="113423" e_stop="113414" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115639" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115639" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115621" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115611" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115593" stop="115258"/>
              <exon start="114946" stop="114891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115578" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
              <exon start="114946" stop="114844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115514" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115482" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115479" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115477" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115467" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115458" stop="115258"/>
              <exon start="114946" stop="114865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115366" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="114072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115318" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115283" stop="115258"/>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114946" stop="114830"/>
              <exon start="114321" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114862" stop="114830"/>
              <exon start="114321" stop="113866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114255" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114161" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114133" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTGTGCAGGCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : ATAGTGAAAGATGGATACCAGTGGAGGAAATATGGACAGAAAGTAACAAGAGACAATCCATCTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTACCTGTCCCGTTAAGAAAAAG : GTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT : AGTTAAAAAA</gDNA_template>
            <first_frame> L  F  C  A  G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : Y  S  E  R  W  I  P  V  E  E  I  W  T  E  S  N  K  R  Q  S  I  S  K  S  L  F  Q  M  L  F  C  S  Y  L  S  R  *  E  K   : G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L :   V  K  K </first_frame>
            <second_frame>  C  F  V  Q  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  S  P  R  A  Y  F  K  C  S  F  A  P  T  C  P  V  K  K  K  :  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I   : *  L  K   </second_frame>
            <third_frame>   V  L  C  R  Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  L :   *  *  K  M  D  T  S  G  G  N  M  D  R  K  *  Q  E  T  I  H  L  Q  E  L  I  S  N  A  L  L  L  L  P  V  P  L  R  K  R :   F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  :  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115638" stop="115258"/>
                    <exon start="114946" stop="114830"/>
                    <exon start="114321" stop="113893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFVQASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="114546" e_stop="113589"/>
            <exon e_start="113423" e_stop="113414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.650" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114546" e_stop="113589" e_length="958"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.650">
            <gDNA_intron_boundary i_start="113588" i_stop="113424" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="113423" e_stop="113414" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114546" stop="113857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114546" stop="114054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114545" stop="113997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114545" stop="114123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114545" stop="114183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114532" stop="114181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="113861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114321" stop="114010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114255" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114199" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114161" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114133" stop="113589"/>
              <exon start="113423" stop="113414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGCCACATTTTTATTAGATTAAACTGAACTTAATTATTATTTTCAACTTGAACTAGTTGTAGAGTACTATTATCCCCTTTACTAGCAAGGGTTAAAACTGAAAAAATAGATAAAATTTCACTTATTTTGAATTCAATACATGTTCTAGATCGCGAATTTGTCTTTTTTTTCCCCACAGTTATATGCATTTTCTAACAATGAACTACGTGATATTTTTGTCAGGTTCAAAGAAGCGTGGAAGACCAATCGATTCTAGTAGCAACCTATGAAGGAGAACACAACCATTCTAAAGTGGATACCGCAGGCCCTGTTACAACAACTTCCCCGTCTAGCCGATTTAACCCGAAAAATAATACTTATGCTGCTGCGGTAATGCCAAGACAAACCTTAACTCTTGATTTGGCAGAACCAAAAACATTACAAAATGATATCAAAAAAGTTCATAGCATTACAAGTACAAGTAGTGCAAGTGGTCAGAAGCGTAAATCACCAGGAACTGATCAACAACAGCAAAATAGACCAGAGTTTCAACATTTCTTGATAGAACAAATGGCTTCATCATTGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGAAAATTCTTGCAAAATAATAGTAACACTAAGGATAAATAATTAAAACGAAAATTATGTTGACACATTGAAATGTTCCAGAGAAAGACAGGCAGCCACTAGGACATGTCGTTATAAATTGTATATATTGTTTACTATATTTGTCTTCTTTTTTTTTGGGAGAACAGTAGCCAGTAGGTAGGACTAGTAAGTGCACGTGAAAATGGGATGGGCTAATTTTCTATAGCAGCCTATATTAGTTAGGTCTCAGTTTGCTCCTTTTCAGTCTCACAAGATTGAGACTTTTGGTGGCCCTTGAAATTAAAGTGTTGGATTTGCTCAAATAAATATTTTTATAATTTGATTT : AGTTAAAAAA</gDNA_template>
            <first_frame> H  S  H  I  F  I  R  L  N  *  T  *  L  L  F  S  T  *  T  S  C  R  V  L  L  S  P  L  L  A  R  V  K  T  E  K  I  D  K  I  S  L  I  L  N  S  I  H  V  L  D  R  E  F  V  F  F  F  P  T  V  I  C  I  F  *  Q  *  T  T  *  Y  F  C  Q  V  Q  R  S  V  E  D  Q  S  I  L  V  A  T  Y  E  G  E  H  N  H  S  K  V  D  T  A  G  P  V  T  T  T  S  P  S  S  R  F  N  P  K  N  N  T  Y  A  A  A  V  M  P  R  Q  T  L  T  L  D  L  A  E  P  K  T  L  Q  N  D  I  K  K  V  H  S  I  T  S  T  S  S  A  S  G  Q  K  R  K  S  P  G  T  D  Q  Q  Q  Q  N  R  P  E  F  Q  H  F  L  I  E  Q  M  A  S  S  L  T  K  D  P  S  F  Q  A  A  L  A  A  A  I  S  G  K  F  L  Q  N  N  S  N  T  K  D  K  *  L  K  R  K  L  C  *  H  I  E  M  F  Q  R  K  T  G  S  H  *  D  M  S  L  *  I  V  Y  I  V  Y  Y  I  C  L  L  F  F  W  E  N  S  S  Q  *  V  G  L  V  S  A  R  E  N  G  M  G  *  F  S  I  A  A  Y  I  S  *  V  S  V  C  S  F  S  V  S  Q  D  *  D  F  W  W  P  L  K  L  K  C  W  I  C  S  N  K  Y  F  Y  N  L  I   : *  L  K   </first_frame>
            <second_frame>  T  A  T  F  L  L  D  *  T  E  L  N  Y  Y  F  Q  L  E  L  V  V  E  Y  Y  Y  P  L  Y  *  Q  G  L  K  L  K  K  *  I  K  F  H  L  F  *  I  Q  Y  M  F  *  I  A  N  L  S  F  F  S  P  Q  L  Y  A  F  S  N  N  E  L  R  D  I  F  V  R  F  K  E  A  W  K  T  N  R  F  *  *  Q  P  M  K  E  N  T  T  I  L  K  W  I  P  Q  A  L  L  Q  Q  L  P  R  L  A  D  L  T  R  K  I  I  L  M  L  L  R  *  C  Q  D  K  P  *  L  L  I  W  Q  N  Q  K  H  Y  K  M  I  S  K  K  F  I  A  L  Q  V  Q  V  V  Q  V  V  R  S  V  N  H  Q  E  L  I  N  N  S  K  I  D  Q  S  F  N  I  S  *  *  N  K  W  L  H  H  *  L  K  I  Q  V  F  K  Q  P  *  Q  P  P  Y  Q  E  N  S  C  K  I  I  V  T  L  R  I  N  N  *  N  E  N  Y  V  D  T  L  K  C  S  R  E  R  Q  A  A  T  R  T  C  R  Y  K  L  Y  I  L  F  T  I  F  V  F  F  F  F  G  R  T  V  A  S  R  *  D  *  *  V  H  V  K  M  G  W  A  N  F  L  *  Q  P  I  L  V  R  S  Q  F  A  P  F  Q  S  H  K  I  E  T  F  G  G  P  *  N  *  S  V  G  F  A  Q  I  N  I  F  I  I  *  F  :  S  *  K  </second_frame>
            <third_frame>   Q  P  H  F  Y  *  I  K  L  N  L  I  I  I  F  N  L  N  *  L  *  S  T  I  I  P  F  T  S  K  G  *  N  *  K  N  R  *  N  F  T  Y  F  E  F  N  T  C  S  R  S  R  I  C  L  F  F  P  H  S  Y  M  H  F  L  T  M  N  Y  V  I  F  L  S  G  S  K  K  R  G  R  P  I  D  S  S  S  N  L  *  R  R  T  Q  P  F  *  S  G  Y  R  R  P  C  Y  N  N  F  P  V  *  P  I  *  P  E  K  *  Y  L  C  C  C  G  N  A  K  T  N  L  N  S  *  F  G  R  T  K  N  I  T  K  *  Y  Q  K  S  S  *  H  Y  K  Y  K  *  C  K  W  S  E  A  *  I  T  R  N  *  S  T  T  A  K  *  T  R  V  S  T  F  L  D  R  T  N  G  F  I  I  D  *  R  S  K  F  S  S  S  L  S  S  R  H  I  R  K  I  L  A  K  *  *  *  H  *  G  *  I  I  K  T  K  I  M  L  T  H  *  N  V  P  E  K  D  R  Q  P  L  G  H  V  V  I  N  C  I  Y  C  L  L  Y  L  S  S  F  F  L  G  E  Q  *  P  V  G  R  T  S  K  C  T  *  K  W  D  G  L  I  F  Y  S  S  L  Y  *  L  G  L  S  L  L  L  F  S  L  T  R  L  R  L  L  V  A  L  E  I  K  V  L  D  L  L  K  *  I  F  L  *  F  D  L :   V  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114333" stop="113893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFCQVQRSVEDQSILVATYEGEHNHSKVDTAGPVTTTSPSSRFNPKNNTYAAAVMPRQTLTLDLAEPKTLQNDIKKVHSITSTSSASGQKRKSPGTDQQQQNRPEFQHFLIEQMASSLTKDPSFQAALAAAISGKFLQNNSNTKDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="116004" e_stop="115867"/>
            <exon e_start="115782" e_stop="115726"/>
            <exon e_start="115626" e_stop="115258"/>
            <exon e_start="115189" e_stop="115185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116004" e_stop="115867" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.981">
            <gDNA_intron_boundary i_start="115866" i_stop="115783" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115782" e_stop="115726" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115725" i_stop="115627" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115626" e_stop="115258" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.857">
            <gDNA_intron_boundary i_start="115257" i_stop="115190" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="115189" e_stop="115185" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116004" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115258"/>
              <exon start="115189" stop="115185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115990" stop="115867"/>
              <exon start="115782" stop="115726"/>
              <exon start="115626" stop="115288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115516" stop="115258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTTCCAATTCTCTATAACAAAAATTTTAATCAATTTTGAAGAACAAAAATCAAAGCAAAATGGAGTTCACAAGTTTAGTTGATACTTCTCTGGATTTGAACTTTAGACCTCTTCGAGTTTCCGATGAATTACCA : GAAGTTGAGAGTAATTTCATAGGACTTGGAAGAGATCTGGTACCTGTAAAAGATGAG : GCAAGTAATTTAATAGAGGAACTAAATAGAGTAAATGCTGAAAATAAGAAATTGACGGAGATGTTAACAGTTATGTGCCAGAATTACAATTCATTGAGGAACCAATTGACGGAATATATGAGCAAGCAGAATAGTAGTACTAGTGGAGCTGATCAGGATCAGAACAGCGATGGATCGAAGAAAATTAAAATTGAAAACAACAACAATAATAATAATAATAATGAAATTGTGAAATCGTCAGTTCAAGTGTTGAATTCAGAGAGCAGCTCAAGTGATGAAGATTCATCTACAAAGAAACCAAGAGAAGAACACATTAAAACTAAGACTTCAAGAGTTTATATGAGAACTGAACCATCTGATACTTCTCTT : CTCGT</gDNA_template>
            <first_frame> Q  F  S  N  S  L  *  Q  K  F  *  S  I  L  K  N  K  N  Q  S  K  M  E  F  T  S  L  V  D  T  S  L  D  L  N  F  R  P  L  R  V  S  D  E  L  P  :  E  V  E  S  N  F  I  G  L  G  R  D  L  V  P  V  K  D  E  :  A  S  N  L  I  E  E  L  N  R  V  N  A  E  N  K  K  L  T  E  M  L  T  V  M  C  Q  N  Y  N  S  L  R  N  Q  L  T  E  Y  M  S  K  Q  N  S  S  T  S  G  A  D  Q  D  Q  N  S  D  G  S  K  K  I  K  I  E  N  N  N  N  N  N  N  N  N  E  I  V  K  S  S  V  Q  V  L  N  S  E  S  S  S  S  D  E  D  S  S  T  K  K  P  R  E  E  H  I  K  T  K  T  S  R  V  Y  M  R  T  E  P  S  D  T  S  L  :  L   </first_frame>
            <second_frame>  N  F  P  I  L  Y  N  K  N  F  N  Q  F  *  R  T  K  I  K  A  K  W  S  S  Q  V  *  L  I  L  L  W  I  *  T  L  D  L  F  E  F  P  M  N  Y  Q :   K  L  R  V  I  S  *  D  L  E  E  I  W  Y  L  *  K  M  R :   Q  V  I  *  *  R  N  *  I  E  *  M  L  K  I  R  N  *  R  R  C  *  Q  L  C  A  R  I  T  I  H  *  G  T  N  *  R  N  I  *  A  S  R  I  V  V  L  V  E  L  I  R  I  R  T  A  M  D  R  R  K  L  K  L  K  T  T  T  I  I  I  I  I  M  K  L  *  N  R  Q  F  K  C  *  I  Q  R  A  A  Q  V  M  K  I  H  L  Q  R  N  Q  E  K  N  T  L  K  L  R  L  Q  E  F  I  *  E  L  N  H  L  I  L  L  F :   S  </second_frame>
            <third_frame>   I  F  Q  F  S  I  T  K  I  L  I  N  F  E  E  Q  K  S  K  Q  N  G  V  H  K  F  S  *  Y  F  S  G  F  E  L  *  T  S  S  S  F  R  *  I  T   : R  S  *  E  *  F  H  R  T  W  K  R  S  G  T  C  K  R  *   : G  K  *  F  N  R  G  T  K  *  S  K  C  *  K  *  E  I  D  G  D  V  N  S  Y  V  P  E  L  Q  F  I  E  E  P  I  D  G  I  Y  E  Q  A  E  *  *  Y  *  W  S  *  S  G  S  E  Q  R  W  I  E  E  N  *  N  *  K  Q  Q  Q  *  *  *  *  *  *  N  C  E  I  V  S  S  S  V  E  F  R  E  Q  L  K  *  *  R  F  I  Y  K  E  T  K  R  R  T  H  *  N  *  D  F  K  S  L  Y  E  N  *  T  I  *  Y  F  S   : S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0157P11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115971" stop="115867"/>
                    <exon start="115782" stop="115726"/>
                    <exon start="115626" stop="115258"/>
                    <exon start="115189" stop="115187"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILKNKNQSKMEFTSLVDTSLDLNFRPLRVSDELPEVESNFIGLGRDLVPVKDEASNLIEELNRVNAENKKLTEMLTVMCQNYNSLRNQLTEYMSKQNSSTSGADQDQNSDGSKKIKIENNNNNNNNNEIVKSSVQVLNSESSSSDEDSSTKKPREEHIKTKTSRVYMRTEPSDTSLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 264 chains have been computed
$ 
$ memory statistics:
$ 897144 bytes spliced alignments in total
$ 217 spliced alignments have been stored
$ 4134 bytes was the average size of a spliced alignment
$ 33728 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 2108 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 296 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:46:44
-->
