<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:12:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10430" stop="9023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10130" g_stop="9323" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10130" e_stop="9323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGCCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17165" stop="15917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16865" g_stop="16217" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16865" e_stop="16217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17164" stop="16180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16864" g_stop="16480" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16864" e_stop="16480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417044" ref_strand="+" ref_description="SGN-E417044 [STM-24-O10]">
      <seq>ctttcttcctcttccccatcacccctttcttctccatctccaaaaccctctcctatttcaactccacgaactcattcatcttcatctattcttgacccaaatcagctcaaagctctacaatcactcaacatcccaacaggcaaaaccccatgttccccatctcacaatactaccactatttgtgattcttcaaccccatttagtcacattgtgtcattaaacttcattaactgctcagatgatgttgcattatcacttactgctttgaaatcattgtctacagtgaaggatttggggttttacaattgccccatttcacctattaggttaccttctcagcttgctttgaatctgaaatcttttacttgtgttagtagtttgaagaaattaactggggtttggcttagcaaattggtgaatgttactgatttaactgtttctcatgtttcgattggtgctagtggtccatctataatcatgaatagtataaagaatttgcacagtgttacgatttcgaatgctaatcttactggttatttgcctaaacattggcattcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="+" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23821" stop="24979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24121" g_stop="24679" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="+" ref_id="SGN-E417044" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24121" e_stop="24679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCTCTTCCCCATCACCCCTTTCTTCTCCATCTCCAAAACCATCTCCTATTTCATCTCCACCAACTCATTCATCTTCATCTGCTCTTGACCCAAAACAACTCAAAGCTCTACAATCACTCAACATCCCAACAGGCAAAAGCCCATGTTCCCCATCTCACAATACTACCACTATTTGTGATTCTTCAACCCCATTTAGTCACATTGTGTCATTAAACTTCATTAACTGTTCAGATGATGTTGCATTATCACTTACTGCTTTGAAATCATTGTCTACAGTGAAGGATTTGGGGTTTTACAATTGCCCAATTTCACCTATTAGGTTACCTTCTCAGCTTGCTTTGAATCTGAAATCTTTTACTTGTGTTAGTAGTTTGAAGAAATTAACTGGGGTTTGGCTTAGCAAATTGGTTAATGTTACTGATTTAACTGTTTCTCATGTTTCCATTGTTGCTAGTGGTCCATCTATAATCATGAATAGTATAAAGAATTTGCACAGTGTTACGATTTCGAATGCTAATCTTACGGGCTATTTGCCTAAACATTGGCATTCGA</genome_strand>
        <mrna_strand>CTTTCTTCCTCTTCCCCATCACCCCTTTCTTCTCCATCTCCAAAACCCTCTCCTATTTCAACTCCACGAACTCATTCATCTTCATCTATTCTTGACCCAAATCAGCTCAAAGCTCTACAATCACTCAACATCCCAACAGGCAAAACCCCATGTTCCCCATCTCACAATACTACCACTATTTGTGATTCTTCAACCCCATTTAGTCACATTGTGTCATTAAACTTCATTAACTGCTCAGATGATGTTGCATTATCACTTACTGCTTTGAAATCATTGTCTACAGTGAAGGATTTGGGGTTTTACAATTGCCCCATTTCACCTATTAGGTTACCTTCTCAGCTTGCTTTGAATCTGAAATCTTTTACTTGTGTTAGTAGTTTGAAGAAATTAACTGGGGTTTGGCTTAGCAAATTGGTGAATGTTACTGATTTAACTGTTTCTCATGTTTCGATTGGTGCTAGTGGTCCATCTATAATCATGAATAGTATAAAGAATTTGCACAGTGTTACGATTTCGAATGCTAATCTTACTGGTTATTTGCCTAAACATTGGCATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461580" ref_strand="+" ref_description="SGN-E461580 [cPRO-8-N18]">
      <seq>tcaaagcacacccttggcataaggtattccacaaacgaatgccacctgaagctattgaccttgcttcacgtctattgcagtactcacctagtcttcgttgcaatgctcttgaagcatgtgcacatccattctttgatgagcttcgagaacccaacgcacgccttccccatggccggcaattgccgcctcttttcaattttaagcaggagttggctggtgcctctccagacctcattaacaggttgataccagatcatataaaaaggcaaatgggactgcatcatttcacgacccgtgatgacatgacgtgaaaagtacatgtttagccaagtataccggttgatgatgatctgtatatcaagagatccgagtttacattctccccgacaggttccaccatgacaagctgcatctccttgtcgacaagaggacagagtaaagggtggttgctgtgtatttcaatccttcgtcgtggtattgtcttttctcgttccactctttgagtatctctccgtcctctcttaccggccgactagcgtaaggaaagttctttttttgtacatgttttggtagtagtaaatgaccagaaagctcccaccatcatacaaatgaaatgtaatttttttaaaaagaaaagcaaggaactaaggggctgtttaatctcttgtaaaatttgatatatgtgttctgtttgtatttatttttactttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35759" stop="33156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35459" g_stop="35437" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35436" i_stop="34643" i_length="794">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34642" g_stop="34559" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="107" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34558" i_stop="34343" i_length="216">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34342" g_stop="34241" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="209" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34240" i_stop="33976" i_length="265">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33975" g_stop="33468" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="714" r_length="505" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E461580" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35459" e_stop="35437"/>
          <exon e_start="34642" e_stop="34559"/>
          <exon e_start="34342" e_stop="34241"/>
          <exon e_start="33975" e_stop="33468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCACACCCTTGGCATAAGGTATACATACTTGATTTCAGCTTTACCTAGTGTAAGAAAGAGTTTGTAGTCGTCTGTAGCTTATCCTGCTTTCCATTTGGTAAAAGTGTTAAATAAGTACTCCTTCCGTTCAATTTTCTTGTTTGGTTTTGATTTGGCACGAAGTTTAAGAAAGTAAAGAAGTCTTGAATCTTGTGGTCTTAAACTAAAGAGATGTAGAATGTACCAAAAATCTCTTTTATCTTGTGGTCTAAAATATGTCATGTGAAAAGTTGAAATTGAAGAAGTGTGAAAAAGGAAAGAGGCATTTTCTTAAACGGACTCAAAAGAAAAGTAAAACAAACAAATTGAAACGGATGGAGTAATATTTTGCTACGATCATCTGCTCCATAAATTTTAGGGAGCTATTAATTTCTAGTATTTACATTTGCGAGAATTTGCACTCCGAAAATTCATTCAATTTAGTACATTTGAATTTGCAATCGACAAATTGAGAGGCTGAAAAGTTTTAATTAATACCTATGGAGAGTAGGCTTAATTCTGTTTTCGAGTTTGTTTAAAATCCATGATTGTACAGTTTATATTAGCTATAGTGGCAAGATTGACTAGGCATGGAATTCATTCTTCCTAAGAAGCAATCCGTTGAGAATAGAAATCATAAAATAAGTAATTCCTTGACAAGGGAACTTATTATAGTTAAATGAGTTCAGTTTTTTTGTGTATTCTTACCTTCAATAACAACCCTGTAAATTCAATTCATAGCACGTAATTTCTCTTCGGCTGACTCGCTATATTTCCCTTGTCGTGGTCTTTAGGTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCTGTAAGTTTGATCTAGTTGTCTTTAATCTAACGTGACTTTTTTTCATTATGCAAGTTATCTTGATTGCGTCTAGCATGCTTTGCCTACTTCTCATTTGGGGTTAGTTATGCAGGTCTTTTATATTTCCAGCAAACGATACCATGTTTCTAAACCACTCTTTATTGGATGCCACAAACCTAAAACTAACTAGTTAGTGTTCTATTTTTCTTTCTGCAGCTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAGGTATGTATTTCACTCATGGTCGTTCTAGATTTGTGAAACATATTAGAGTGATTCATTCAATGGACCCCCTGTGGGGTAGAGAGGTTGTTCCCGGTAGACCTATGGCTCAAAAGAGAAGATATTGAAGCTATGTAGACAACTTTACTAAATCATCTATTGAAGTAACTCCTTCGCTAATCAGGCGTACTCTTGTTCAATCGAAAACGTTGCTAAAATATTATTAAAGCAGCTGTTGTGCTGATCCAACTATATTTTACCGTTTCAGTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAGGAAAGTTCTTTTTCTGTACATGTTTTGGTAGTAGTACATTGACCAGAAAGCTCCCACCATCATACAAATGAAATGTATTTTTTTTATAAAAAAAATGAGCAAGGAACTAAGGAGCTGTTTAATCTCTTGTAAAATTTGATATATGTGTTCTGTTTGTATTTA-TTTTATTTTATTT</genome_strand>
        <mrna_strand>TCAAAGCACACCCTTGGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCACAAACGAATGCCACCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCT........................................................................................................................................................................................................................CTTGAAGCATGTGCACATCCATTCTTTGATGAGCTTCGAGAACCCAACGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAG.........................................................................................................................................................................................................................................................................TTGGCTGGTGCCTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCATTTCACGACCCGTGATGACATGACGTGAAAAGTACATGTTTAGCCAAGTATACCGGTTGATGATGATCTGTATATCAAGAGATCCGAGTTTACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACAAGAGGACAGAGTAAAGGGTGGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTTGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCGTAAGGAAAGTTCTTTTTTTGTACATGTTTTGGTAGTAGTA-AATGACCAGAAAGCTCCCACCATCATACAAATGAAATGTAATTTTTTTA-AAAAGAAA--AGCAAGGAACTAAGGGGCTGTTTAATCTCTTGTAAAATTTGATATATGTGTTCTGTTTGTATTTATTTTTACTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732382" ref_strand="+" ref_description="SGN-E732382 [LB02AA12]">
      <seq>gttggctggtgcttctccagacctcattaacaggttgataccagatcatataaaaaggcaaatgggactgcatcttttcacgacccgtgatgacatgacataaaaagtacatgtttagctaagtattcgggttgatgatgatctgtatatcaagaaatccgagttcacattctccccgacaggttccaccatgacaagctgcatctccttgtcgacgagaagacaaagtaaagggttgttgctgcgtatttcaatccttcgtcgtggtattgtcttttctcgttccactcttcgagtatctctccgtcctctcttaccggccgactagcttaaggaaagttctttttctgtacatgttttggtagtagtacattgaccagaaagctcccaccatcatacaaatgaaatgtatttttttttaaaaaaaaatgagcaaggaactaaggagctgtttaatctcttgtaaaatttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34276" stop="33200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33976" g_stop="33503" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="485"/>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E732382" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33976" e_stop="33503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAGGAAAGTTCTTTTTCTGTACATGTTTTGGTAGTAGTACATTGACCAGAAAGCTCCCACCATCATACAAATGAAATGTATTTTTTTTATAAAAAAAATGAGCAAGGAACTAAGGAGCTGTTTAATCTCTTGTAAAATTTGAT</genome_strand>
        <mrna_strand>GTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACATAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAAGACAAAGTAAAGGGTTGTTGCTGCGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAGGAAAGTTCTTTTTCTGTACATGTTTTGGTAGTAGTACATTGACCAGAAAGCTCCCACCATCATACAAATGAAATGTATTTTTTTTTAAAAAAAAATGAGCAAGGAACTAAGGAGCTGTTTAATCTCTTGTAAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556395" ref_strand="+" ref_description="SGN-E556395 [cTSD-3-F23]">
      <seq>ccctgttacccatcaagtgaaaatttgtgattttggaagtgcaaaagtgctggttaaaggtgaagcaaacatctcatacatctgctcacggttttatcgggctcctgaacttatattcggtgcaacagagtatacgacctctattgatatctggtcagctggttgtgtccttgcagagcttctcctaggccagccattatttccaggagaaaatgctgtcgatcagcttgttgagataatcaaggtacttggaacaccaacgagagaggaaattcgttgtatgaatccaaattacactgattttcggtttccacaaatcaaagcacacccttggcataaggtattccacaaacgaatgccgcctgaagctattgaccttgcttcacgtctattgcagtactcacctagtcttcgttgcaatgctcttgaagcatgtgcgcatcctttctttgacgagcttcgagaacccaatgcacgccttccccatggccggcaattgccgcctcttttcaattttaagcaggagttggctggtgcttctccagacctcattaacaggttgataccagatcatataaaaaggcaaatgggactgcatcttttcacgacccgtgatgacatgacgtaaaaagtacatgtttagctaagtattcgggttgatgatgatctgtatatcaagaaatccgagttcacattctccccgacaggttccaccatgacaagctgcatctccttgtcgacgagaggacaaagtaaagggttgttgctgtgtatttcaatccttcgtcgtggtattgtcttttctcgttccactcttcgagtatctctccgtcctctctttacggccgactagcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36210" stop="33343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35907" g_stop="35767" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="193" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35766" i_stop="35655" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35654" g_stop="35604" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="244" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35603" i_stop="35533" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35532" g_stop="35437" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="340" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35436" i_stop="34643" i_length="794">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34642" g_stop="34559" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="424" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34558" i_stop="34343" i_length="216">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34342" g_stop="34241" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34240" i_stop="33976" i_length="265">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33975" g_stop="33643" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="859" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E556395" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35907" e_stop="35767"/>
          <exon e_start="35654" e_stop="35604"/>
          <exon e_start="35532" e_stop="35437"/>
          <exon e_start="34642" e_stop="34559"/>
          <exon e_start="34342" e_stop="34241"/>
          <exon e_start="33975" e_stop="33643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGGTGAAGCAAACATCTCATACATCTGCTCACGGTTTTATCGGGCTCCTGAACTTATATTCGGTGCAACAGAGTATACGACCTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAGCTTCTCCTAGGCCAGGTTTGTAAAAATCTAGGTTTTTTTCCTTGCTTAAGTAGTATGTGAGATTTTTCGTGCTCCATAATCCCGCATGAGCAAATTTTTCTGACTAGTTTTGCAATATTTTTTGTAGCCATTATTTCCAGGAGAAAATGCTGTCGATCAGCTTGTTGAGATAATCAAGGTACAACTTGAATTTTTAAATCTGATGCAAATGTTTCTGTACAATTGTTGTTCATTTGCTTCATCTTCCAGGTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAGGTATACATACTTGATTTCAGCTTTACCTAGTGTAAGAAAGAGTTTGTAGTCGTCTGTAGCTTATCCTGCTTTCCATTTGGTAAAAGTGTTAAATAAGTACTCCTTCCGTTCAATTTTCTTGTTTGGTTTTGATTTGGCACGAAGTTTAAGAAAGTAAAGAAGTCTTGAATCTTGTGGTCTTAAACTAAAGAGATGTAGAATGTACCAAAAATCTCTTTTATCTTGTGGTCTAAAATATGTCATGTGAAAAGTTGAAATTGAAGAAGTGTGAAAAAGGAAAGAGGCATTTTCTTAAACGGACTCAAAAGAAAAGTAAAACAAACAAATTGAAACGGATGGAGTAATATTTTGCTACGATCATCTGCTCCATAAATTTTAGGGAGCTATTAATTTCTAGTATTTACATTTGCGAGAATTTGCACTCCGAAAATTCATTCAATTTAGTACATTTGAATTTGCAATCGACAAATTGAGAGGCTGAAAAGTTTTAATTAATACCTATGGAGAGTAGGCTTAATTCTGTTTTCGAGTTTGTTTAAAATCCATGATTGTACAGTTTATATTAGCTATAGTGGCAAGATTGACTAGGCATGGAATTCATTCTTCCTAAGAAGCAATCCGTTGAGAATAGAAATCATAAAATAAGTAATTCCTTGACAAGGGAACTTATTATAGTTAAATGAGTTCAGTTTTTTTGTGTATTCTTACCTTCAATAACAACCCTGTAAATTCAATTCATAGCACGTAATTTCTCTTCGGCTGACTCGCTATATTTCCCTTGTCGTGGTCTTTAGGTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCTGTAAGTTTGATCTAGTTGTCTTTAATCTAACGTGACTTTTTTTCATTATGCAAGTTATCTTGATTGCGTCTAGCATGCTTTGCCTACTTCTCATTTGGGGTTAGTTATGCAGGTCTTTTATATTTCCAGCAAACGATACCATGTTTCTAAACCACTCTTTATTGGATGCCACAAACCTAAAACTAACTAGTTAGTGTTCTATTTTTCTTTCTGCAGCTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAGGTATGTATTTCACTCATGGTCGTTCTAGATTTGTGAAACATATTAGAGTGATTCATTCAATGGACCCCCTGTGGGGTAGAGAGGTTGTTCCCGGTAGACCTATGGCTCAAAAGAGAAGATATTGAAGCTATGTAGACAACTTTACTAAATCATCTATTGAAGTAACTCCTTCGCTAATCAGGCGTACTCTTGTTCAATCGAAAACGTTGCTAAAATATTATTAAAGCAGCTGTTGTGCTGATCCAACTATATTTTACCGTTTCAGTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAG</genome_strand>
        <mrna_strand>GTTAAAGGTGAAGCAAACATCTCATACATCTGCTCACGGTTTTATCGGGCTCCTGAACTTATATTCGGTGCAACAGAGTATACGACCTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAGCTTCTCCTAGGCCAG................................................................................................................CCATTATTTCCAGGAGAAAATGCTGTCGATCAGCTTGTTGAGATAATCAAG.......................................................................GTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCT........................................................................................................................................................................................................................CTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAG.........................................................................................................................................................................................................................................................................TTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTTACGGCCGACTAGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348818" ref_strand="+" ref_description="SGN-E348818 [cTOF-29-H15]">
      <seq>ctctattgatatctggtcagctggttgtgtccttgcagagcttctcctaggccagccattatttccaggagaaaatgctgtcgatcagcttgttgagataatcaaggtacttggaacaccaacgagagaggaaattcgttgtatgaatccaaattacactgattttcggtttccacaaatcaaagcacacccttggcataaggtattccacaaacgaatgccgcctgaagctattgaccttgcttcacgtctattgcagtactcacctagtcttcgttgcaatgctcttgaagcatgtgcgcatcctttctttgacgagcttcgagaacccaatgcacgccttccccatggccggcaattgccgcctcttttcaattttaagcaggagttggctggtgcttctccagacctcattaacaggttgataccagatcatataaaaaggcaaatgggactgcatcttttcacgacccgtgatgacatgacgtaaaaagtacatgtttagctaagtattcgggttgatgatgatctgtatatcaagaaatccgagttcacattctccccgacaggttccaccatgacaagctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="36121" stop="33472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35821" g_stop="35767" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35766" i_stop="35655" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35654" g_stop="35604" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="106" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35603" i_stop="35533" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35532" g_stop="35437" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="202" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35436" i_stop="34643" i_length="794">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34642" g_stop="34559" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="286" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34558" i_stop="34343" i_length="216">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34342" g_stop="34241" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="388" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34240" i_stop="33976" i_length="265">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33975" g_stop="33772" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="592" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E348818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35821" e_stop="35767"/>
          <exon e_start="35654" e_stop="35604"/>
          <exon e_start="35532" e_stop="35437"/>
          <exon e_start="34642" e_stop="34559"/>
          <exon e_start="34342" e_stop="34241"/>
          <exon e_start="33975" e_stop="33772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAGCTTCTCCTAGGCCAGGTTTGTAAAAATCTAGGTTTTTTTCCTTGCTTAAGTAGTATGTGAGATTTTTCGTGCTCCATAATCCCGCATGAGCAAATTTTTCTGACTAGTTTTGCAATATTTTTTGTAGCCATTATTTCCAGGAGAAAATGCTGTCGATCAGCTTGTTGAGATAATCAAGGTACAACTTGAATTTTTAAATCTGATGCAAATGTTTCTGTACAATTGTTGTTCATTTGCTTCATCTTCCAGGTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAGGTATACATACTTGATTTCAGCTTTACCTAGTGTAAGAAAGAGTTTGTAGTCGTCTGTAGCTTATCCTGCTTTCCATTTGGTAAAAGTGTTAAATAAGTACTCCTTCCGTTCAATTTTCTTGTTTGGTTTTGATTTGGCACGAAGTTTAAGAAAGTAAAGAAGTCTTGAATCTTGTGGTCTTAAACTAAAGAGATGTAGAATGTACCAAAAATCTCTTTTATCTTGTGGTCTAAAATATGTCATGTGAAAAGTTGAAATTGAAGAAGTGTGAAAAAGGAAAGAGGCATTTTCTTAAACGGACTCAAAAGAAAAGTAAAACAAACAAATTGAAACGGATGGAGTAATATTTTGCTACGATCATCTGCTCCATAAATTTTAGGGAGCTATTAATTTCTAGTATTTACATTTGCGAGAATTTGCACTCCGAAAATTCATTCAATTTAGTACATTTGAATTTGCAATCGACAAATTGAGAGGCTGAAAAGTTTTAATTAATACCTATGGAGAGTAGGCTTAATTCTGTTTTCGAGTTTGTTTAAAATCCATGATTGTACAGTTTATATTAGCTATAGTGGCAAGATTGACTAGGCATGGAATTCATTCTTCCTAAGAAGCAATCCGTTGAGAATAGAAATCATAAAATAAGTAATTCCTTGACAAGGGAACTTATTATAGTTAAATGAGTTCAGTTTTTTTGTGTATTCTTACCTTCAATAACAACCCTGTAAATTCAATTCATAGCACGTAATTTCTCTTCGGCTGACTCGCTATATTTCCCTTGTCGTGGTCTTTAGGTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCTGTAAGTTTGATCTAGTTGTCTTTAATCTAACGTGACTTTTTTTCATTATGCAAGTTATCTTGATTGCGTCTAGCATGCTTTGCCTACTTCTCATTTGGGGTTAGTTATGCAGGTCTTTTATATTTCCAGCAAACGATACCATGTTTCTAAACCACTCTTTATTGGATGCCACAAACCTAAAACTAACTAGTTAGTGTTCTATTTTTCTTTCTGCAGCTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAGGTATGTATTTCACTCATGGTCGTTCTAGATTTGTGAAACATATTAGAGTGATTCATTCAATGGACCCCCTGTGGGGTAGAGAGGTTGTTCCCGGTAGACCTATGGCTCAAAAGAGAAGATATTGAAGCTATGTAGACAACTTTACTAAATCATCTATTGAAGTAACTCCTTCGCTAATCAGGCGTACTCTTGTTCAATCGAAAACGTTGCTAAAATATTATTAAAGCAGCTGTTGTGCTGATCCAACTATATTTTACCGTTTCAGTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATC</genome_strand>
        <mrna_strand>CTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAGCTTCTCCTAGGCCAG................................................................................................................CCATTATTTCCAGGAGAAAATGCTGTCGATCAGCTTGTTGAGATAATCAAG.......................................................................GTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCT........................................................................................................................................................................................................................CTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAG.........................................................................................................................................................................................................................................................................TTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274275" ref_strand="+" ref_description="SGN-E274275 [cLEN-15-B10]">
      <seq>ataatcaaggtacttggaacaccaacgagagaggaaattcgttgtatgaatccaaattacactgattttcggtttccacaaatcaaagcacacccttggcataaggtattccacaaacgaatgccgcctgaagctattgaccttgcttcacgtctattgcagtactcacctagtctttgttgcaatgctcttgaagcatgtgcgcatcctttctttgacgagcttcgagaacccaatgcacgccttccccatggccggccattgccgccttttttcaattttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0141L10-na2fQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0141L10.1" temp_strand="-" temp_description="C03HBa0141L10.1  AC238453.1 htgs_phase:2 submitted_to_sgn_as:gi|260903625|gb|AC238453.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0141l10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35841" stop="33946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35612" g_stop="35604" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35603" i_stop="35533" i_length="71">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35532" g_stop="35437" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="105" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35436" i_stop="34643" i_length="794">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34642" g_stop="34559" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="189" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34558" i_stop="34343" i_length="216">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34342" g_stop="34246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="286" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0141L10.1" gen_strand="-" ref_id="SGN-E274275" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0141L10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35612" e_stop="35604"/>
          <exon e_start="35532" e_stop="35437"/>
          <exon e_start="34642" e_stop="34559"/>
          <exon e_start="34342" e_stop="34246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAAGGTACAACTTGAATTTTTAAATCTGATGCAAATGTTTCTGTACAATTGTTGTTCATTTGCTTCATCTTCCAGGTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAGGTATACATACTTGATTTCAGCTTTACCTAGTGTAAGAAAGAGTTTGTAGTCGTCTGTAGCTTATCCTGCTTTCCATTTGGTAAAAGTGTTAAATAAGTACTCCTTCCGTTCAATTTTCTTGTTTGGTTTTGATTTGGCACGAAGTTTAAGAAAGTAAAGAAGTCTTGAATCTTGTGGTCTTAAACTAAAGAGATGTAGAATGTACCAAAAATCTCTTTTATCTTGTGGTCTAAAATATGTCATGTGAAAAGTTGAAATTGAAGAAGTGTGAAAAAGGAAAGAGGCATTTTCTTAAACGGACTCAAAAGAAAAGTAAAACAAACAAATTGAAACGGATGGAGTAATATTTTGCTACGATCATCTGCTCCATAAATTTTAGGGAGCTATTAATTTCTAGTATTTACATTTGCGAGAATTTGCACTCCGAAAATTCATTCAATTTAGTACATTTGAATTTGCAATCGACAAATTGAGAGGCTGAAAAGTTTTAATTAATACCTATGGAGAGTAGGCTTAATTCTGTTTTCGAGTTTGTTTAAAATCCATGATTGTACAGTTTATATTAGCTATAGTGGCAAGATTGACTAGGCATGGAATTCATTCTTCCTAAGAAGCAATCCGTTGAGAATAGAAATCATAAAATAAGTAATTCCTTGACAAGGGAACTTATTATAGTTAAATGAGTTCAGTTTTTTTGTGTATTCTTACCTTCAATAACAACCCTGTAAATTCAATTCATAGCACGTAATTTCTCTTCGGCTGACTCGCTATATTTCCCTTGTCGTGGTCTTTAGGTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCTGTAAGTTTGATCTAGTTGTCTTTAATCTAACGTGACTTTTTTTCATTATGCAAGTTATCTTGATTGCGTCTAGCATGCTTTGCCTACTTCTCATTTGGGGTTAGTTATGCAGGTCTTTTATATTTCCAGCAAACGATACCATGTTTCTAAACCACTCTTTATTGGATGCCACAAACCTAAAACTAACTAGTTAGTGTTCTATTTTTCTTTCTGCAGCTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGC</genome_strand>
        <mrna_strand>ATAATCAAG.......................................................................GTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTTGTTGCAATGCT........................................................................................................................................................................................................................CTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCCATTGCCGCCTTTTTTCAATTTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10130" PGL_stop="9323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10130" e_stop="9323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10130" e_stop="9323" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10130" stop="9323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGCCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  A  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  P  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10128" stop="9325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16865" PGL_stop="16217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16865" e_stop="16217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="16865" e_stop="16217" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16865" stop="16217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16864" stop="16480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  R  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  V  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  G  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  S  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16864" stop="16217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHRSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKVRVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTTFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24121" PGL_stop="24679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24121" e_stop="24679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="24121" e_stop="24679" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24121" stop="24679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTTCCTCTTCCCCATCACCCCTTTCTTCTCCATCTCCAAAACCATCTCCTATTTCATCTCCACCAACTCATTCATCTTCATCTGCTCTTGACCCAAAACAACTCAAAGCTCTACAATCACTCAACATCCCAACAGGCAAAAGCCCATGTTCCCCATCTCACAATACTACCACTATTTGTGATTCTTCAACCCCATTTAGTCACATTGTGTCATTAAACTTCATTAACTGTTCAGATGATGTTGCATTATCACTTACTGCTTTGAAATCATTGTCTACAGTGAAGGATTTGGGGTTTTACAATTGCCCAATTTCACCTATTAGGTTACCTTCTCAGCTTGCTTTGAATCTGAAATCTTTTACTTGTGTTAGTAGTTTGAAGAAATTAACTGGGGTTTGGCTTAGCAAATTGGTTAATGTTACTGATTTAACTGTTTCTCATGTTTCCATTGTTGCTAGTGGTCCATCTATAATCATGAATAGTATAAAGAATTTGCACAGTGTTACGATTTCGAATGCTAATCTTACGGGCTATTTGCCTAAACATTGGCATTCGA</gDNA_template>
            <first_frame> L  S  S  S  S  P  S  P  L  S  S  P  S  P  K  P  S  P  I  S  S  P  P  T  H  S  S  S  S  A  L  D  P  K  Q  L  K  A  L  Q  S  L  N  I  P  T  G  K  S  P  C  S  P  S  H  N  T  T  T  I  C  D  S  S  T  P  F  S  H  I  V  S  L  N  F  I  N  C  S  D  D  V  A  L  S  L  T  A  L  K  S  L  S  T  V  K  D  L  G  F  Y  N  C  P  I  S  P  I  R  L  P  S  Q  L  A  L  N  L  K  S  F  T  C  V  S  S  L  K  K  L  T  G  V  W  L  S  K  L  V  N  V  T  D  L  T  V  S  H  V  S  I  V  A  S  G  P  S  I  I  M  N  S  I  K  N  L  H  S  V  T  I  S  N  A  N  L  T  G  Y  L  P  K  H  W  H  S  </first_frame>
            <second_frame>  F  L  P  L  P  H  H  P  F  L  L  H  L  Q  N  H  L  L  F  H  L  H  Q  L  I  H  L  H  L  L  L  T  Q  N  N  S  K  L  Y  N  H  S  T  S  Q  Q  A  K  A  H  V  P  H  L  T  I  L  P  L  F  V  I  L  Q  P  H  L  V  T  L  C  H  *  T  S  L  T  V  Q  M  M  L  H  Y  H  L  L  L  *  N  H  C  L  Q  *  R  I  W  G  F  T  I  A  Q  F  H  L  L  G  Y  L  L  S  L  L  *  I  *  N  L  L  L  V  L  V  V  *  R  N  *  L  G  F  G  L  A  N  W  L  M  L  L  I  *  L  F  L  M  F  P  L  L  L  V  V  H  L  *  S  *  I  V  *  R  I  C  T  V  L  R  F  R  M  L  I  L  R  A  I  C  L  N  I  G  I  R </second_frame>
            <third_frame>   F  F  L  F  P  I  T  P  F  F  S  I  S  K  T  I  S  Y  F  I  S  T  N  S  F  I  F  I  C  S  *  P  K  T  T  Q  S  S  T  I  T  Q  H  P  N  R  Q  K  P  M  F  P  I  S  Q  Y  Y  H  Y  L  *  F  F  N  P  I  *  S  H  C  V  I  K  L  H  *  L  F  R  *  C  C  I  I  T  Y  C  F  E  I  I  V  Y  S  E  G  F  G  V  L  Q  L  P  N  F  T  Y  *  V  T  F  S  A  C  F  E  S  E  I  F  Y  L  C  *  *  F  E  E  I  N  W  G  L  A  *  Q  I  G  *  C  Y  *  F  N  C  F  S  C  F  H  C  C  *  W  S  I  Y  N  H  E  *  Y  K  E  F  A  Q  C  Y  D  F  E  C  *  S  Y  G  L  F  A  *  T  L  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24121" stop="24678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSSSPSPLSSPSPKPSPISSPPTHSSSSALDPKQLKALQSLNIPTGKSPCSPSHNTTTICDSSTPFSHIVSLNFINCSDDVALSLTALKSLSTVKDLGFYNCPISPIRLPSQLALNLKSFTCVSSLKKLTGVWLSKLVNVTDLTVSHVSIVASGPSIIMNSIKNLHSVTISNANLTGYLPKHWHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35907" PGL_stop="33468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35907" e_stop="35767"/>
            <exon e_start="35654" e_stop="35604"/>
            <exon e_start="35532" e_stop="35437"/>
            <exon e_start="34642" e_stop="34559"/>
            <exon e_start="34342" e_stop="34241"/>
            <exon e_start="33975" e_stop="33468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35907" e_stop="35767" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35766" i_stop="35655" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35654" e_stop="35604" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35603" i_stop="35533" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35532" e_stop="35437" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="35436" i_stop="34643" i_length="794"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34642" e_stop="34559" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34558" i_stop="34343" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34342" e_stop="34241" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34240" i_stop="33976" i_length="265"/>
          </intron>
          <exon e_serial="6" e_score="0.945">
            <gDNA_exon_boundary e_start="33975" e_stop="33468" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35907" stop="35767"/>
              <exon start="35654" stop="35604"/>
              <exon start="35532" stop="35437"/>
              <exon start="34642" stop="34559"/>
              <exon start="34342" stop="34241"/>
              <exon start="33975" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35821" stop="35767"/>
              <exon start="35654" stop="35604"/>
              <exon start="35532" stop="35437"/>
              <exon start="34642" stop="34559"/>
              <exon start="34342" stop="34241"/>
              <exon start="33975" stop="33772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35612" stop="35604"/>
              <exon start="35532" stop="35437"/>
              <exon start="34642" stop="34559"/>
              <exon start="34342" stop="34246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35459" stop="35437"/>
              <exon start="34642" stop="34559"/>
              <exon start="34342" stop="34241"/>
              <exon start="33975" stop="33468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAAAGGTGAAGCAAACATCTCATACATCTGCTCACGGTTTTATCGGGCTCCTGAACTTATATTCGGTGCAACAGAGTATACGACCTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAGCTTCTCCTAGGCCAG : CCATTATTTCCAGGAGAAAATGCTGTCGATCAGCTTGTTGAGATAATCAAG : GTACTTGGAACACCAACGAGAGAGGAAATTCGTTGTATGAATCCAAATTACACTGATTTTCGGTTTCCACAAATCAAAGCACACCCTTGGCATAAG : GTATTCCACAAACGAATGCCGCCTGAAGCTATTGACCTTGCTTCACGTCTATTGCAGTACTCACCTAGTCTTCGTTGCAATGCT : CTTGAAGCATGTGCGCATCCTTTCTTTGACGAGCTTCGAGAACCCAATGCACGCCTTCCCCATGGCCGGCAATTGCCGCCTCTTTTCAATTTTAAGCAGGAG : TTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAGGAAAGTTCTTTTTCTGTACATGTTTTGGTAGTAGTACATTGACCAGAAAGCTCCCACCATCATACAAATGAAATGTATTTTTTTTATAAAAAAAATGAGCAAGGAACTAAGGAGCTGTTTAATCTCTTGTAAAATTTGATATATGTGTTCTGTTTGTATTTATTTTATTTTATTT</gDNA_template>
            <first_frame> V  K  G  E  A  N  I  S  Y  I  C  S  R  F  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  N  A  :  L  E  A  C  A  H  P  F  F  D  E  L  R  E  P  N  A  R  L  P  H  G  R  Q  L  P  P  L  F  N  F  K  Q  E  :  L  A  G  A  S  P  D  L  I  N  R  L  I  P  D  H  I  K  R  Q  M  G  L  H  L  F  T  T  R  D  D  M  T  *  K  V  H  V  *  L  S  I  R  V  D  D  D  L  Y  I  K  K  S  E  F  T  F  S  P  T  G  S  T  M  T  S  C  I  S  L  S  T  R  G  Q  S  K  G  L  L  L  C  I  S  I  L  R  R  G  I  V  F  S  R  S  T  L  R  V  S  L  R  P  L  L  P  A  D  *  L  K  E  S  S  F  S  V  H  V  L  V  V  V  H  *  P  E  S  S  H  H  H  T  N  E  M  Y  F  F  Y  K  K  N  E  Q  G  T  K  E  L  F  N  L  L  *  N  L  I  Y  V  F  C  L  Y  L  F  Y  F  I  </first_frame>
            <second_frame>  L  K  V  K  Q  T  S  H  T  S  A  H  G  F  I  G  L  L  N  L  Y  S  V  Q  Q  S  I  R  P  L  L  I  S  G  Q  L  V  V  S  L  Q  S  F  S  *  A  S :   H  Y  F  Q  E  K  M  L  S  I  S  L  L  R  *  S  R :   Y  L  E  H  Q  R  E  R  K  F  V  V  *  I  Q  I  T  L  I  F  G  F  H  K  S  K  H  T  L  G  I  R :   Y  S  T  N  E  C  R  L  K  L  L  T  L  L  H  V  Y  C  S  T  H  L  V  F  V  A  M  L :   L  K  H  V  R  I  L  S  L  T  S  F  E  N  P  M  H  A  F  P  M  A  G  N  C  R  L  F  S  I  L  S  R  S :   W  L  V  L  L  Q  T  S  L  T  G  *  Y  Q  I  I  *  K  G  K  W  D  C  I  F  S  R  P  V  M  T  *  R  K  K  Y  M  F  S  *  V  F  G  L  M  M  I  C  I  S  R  N  P  S  S  H  S  P  R  Q  V  P  P  *  Q  A  A  S  P  C  R  R  E  D  K  V  K  G  C  C  C  V  F  Q  S  F  V  V  V  L  S  F  L  V  P  L  F  E  Y  L  S  V  L  S  Y  R  P  T  S  L  R  K  V  L  F  L  Y  M  F  W  *  *  Y  I  D  Q  K  A  P  T  I  I  Q  M  K  C  I  F  F  I  K  K  M  S  K  E  L  R  S  C  L  I  S  C  K  I  *  Y  M  C  S  V  C  I  Y  F  I  L  F </second_frame>
            <third_frame>   *  R  *  S  K  H  L  I  H  L  L  T  V  L  S  G  S  *  T  Y  I  R  C  N  R  V  Y  D  L  Y  *  Y  L  V  S  W  L  C  P  C  R  A  S  P  R  P   : A  I  I  S  R  R  K  C  C  R  S  A  C  *  D  N  Q   : G  T  W  N  T  N  E  R  G  N  S  L  Y  E  S  K  L  H  *  F  S  V  S  T  N  Q  S  T  P  L  A  *   : G  I  P  Q  T  N  A  A  *  S  Y  *  P  C  F  T  S  I  A  V  L  T  *  S  S  L  Q  C   : S  *  S  M  C  A  S  F  L  *  R  A  S  R  T  Q  C  T  P  S  P  W  P  A  I  A  A  S  F  Q  F  *  A  G   : V  G  W  C  F  S  R  P  H  *  Q  V  D  T  R  S  Y  K  K  A  N  G  T  A  S  F  H  D  P  *  *  H  D  V  K  S  T  C  L  A  K  Y  S  G  *  *  *  S  V  Y  Q  E  I  R  V  H  I  L  P  D  R  F  H  H  D  K  L  H  L  L  V  D  E  R  T  K  *  R  V  V  A  V  Y  F  N  P  S  S  W  Y  C  L  F  S  F  H  S  S  S  I  S  P  S  S  L  T  G  R  L  A  *  G  K  F  F  F  C  T  C  F  G  S  S  T  L  T  R  K  L  P  P  S  Y  K  *  N  V  F  F  L  *  K  K  *  A  R  N  *  G  A  V  *  S  L  V  K  F  D  I  C  V  L  F  V  F  I  L  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35907" stop="35767"/>
                    <exon start="35654" stop="35604"/>
                    <exon start="35532" stop="35437"/>
                    <exon start="34642" stop="34559"/>
                    <exon start="34342" stop="34241"/>
                    <exon start="33975" stop="33874"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCNALEACAHPFFDELREPNARLPHGRQLPPLFNFKQELAGASPDLINRLIPDHIKRQMGLHLFTTRDDMT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33858" stop="33649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSIRVDDDLYIKKSEFTFSPTGSTMTSCISLSTRGQSKGLLLCISILRRGIVFSRSTLRVSLRPLLPAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33976" e_stop="33503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="33976" e_stop="33503" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33976" stop="33503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGCTGGTGCTTCTCCAGACCTCATTAACAGGTTGATACCAGATCATATAAAAAGGCAAATGGGACTGCATCTTTTCACGACCCGTGATGACATGACGTAAAAAGTACATGTTTAGCTAAGTATTCGGGTTGATGATGATCTGTATATCAAGAAATCCGAGTTCACATTCTCCCCGACAGGTTCCACCATGACAAGCTGCATCTCCTTGTCGACGAGAGGACAAAGTAAAGGGTTGTTGCTGTGTATTTCAATCCTTCGTCGTGGTATTGTCTTTTCTCGTTCCACTCTTCGAGTATCTCTCCGTCCTCTCTTACCGGCCGACTAGCTTAAGGAAAGTTCTTTTTCTGTACATGTTTTGGTAGTAGTACATTGACCAGAAAGCTCCCACCATCATACAAATGAAATGTATTTTTTTTATAAAAAAAATGAGCAAGGAACTAAGGAGCTGTTTAATCTCTTGTAAAATTTGAT</gDNA_template>
            <first_frame> V  G  W  C  F  S  R  P  H  *  Q  V  D  T  R  S  Y  K  K  A  N  G  T  A  S  F  H  D  P  *  *  H  D  V  K  S  T  C  L  A  K  Y  S  G  *  *  *  S  V  Y  Q  E  I  R  V  H  I  L  P  D  R  F  H  H  D  K  L  H  L  L  V  D  E  R  T  K  *  R  V  V  A  V  Y  F  N  P  S  S  W  Y  C  L  F  S  F  H  S  S  S  I  S  P  S  S  L  T  G  R  L  A  *  G  K  F  F  F  C  T  C  F  G  S  S  T  L  T  R  K  L  P  P  S  Y  K  *  N  V  F  F  L  *  K  K  *  A  R  N  *  G  A  V  *  S  L  V  K  F  D </first_frame>
            <second_frame>  L  A  G  A  S  P  D  L  I  N  R  L  I  P  D  H  I  K  R  Q  M  G  L  H  L  F  T  T  R  D  D  M  T  *  K  V  H  V  *  L  S  I  R  V  D  D  D  L  Y  I  K  K  S  E  F  T  F  S  P  T  G  S  T  M  T  S  C  I  S  L  S  T  R  G  Q  S  K  G  L  L  L  C  I  S  I  L  R  R  G  I  V  F  S  R  S  T  L  R  V  S  L  R  P  L  L  P  A  D  *  L  K  E  S  S  F  S  V  H  V  L  V  V  V  H  *  P  E  S  S  H  H  H  T  N  E  M  Y  F  F  Y  K  K  N  E  Q  G  T  K  E  L  F  N  L  L  *  N  L   </second_frame>
            <third_frame>   W  L  V  L  L  Q  T  S  L  T  G  *  Y  Q  I  I  *  K  G  K  W  D  C  I  F  S  R  P  V  M  T  *  R  K  K  Y  M  F  S  *  V  F  G  L  M  M  I  C  I  S  R  N  P  S  S  H  S  P  R  Q  V  P  P  *  Q  A  A  S  P  C  R  R  E  D  K  V  K  G  C  C  C  V  F  Q  S  F  V  V  V  L  S  F  L  V  P  L  F  E  Y  L  S  V  L  S  Y  R  P  T  S  L  R  K  V  L  F  L  Y  M  F  W  *  *  Y  I  D  Q  K  A  P  T  I  I  Q  M  K  C  I  F  F  I  K  K  M  S  K  E  L  R  S  C  L  I  S  C  K  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0141L10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33858" stop="33649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSIRVDDDLYIKKSEFTFSPTGSTMTSCISLSTRGQSKGLLLCISILRRGIVFSRSTLRVSLRPLLPAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 95 chains have been computed
$ 
$ memory statistics:
$ 18552 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2061 bytes was the average size of a spliced alignment
$ 9304 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2326 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 101 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:14:25
-->
