<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:38:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369689" ref_strand="+" ref_description="SGN-E369689 [TUS-25-A5](-)">
      <seq>cgcctccgcctgctcaaccaccggtggctgtatctacctctgattcctgtgaagagcaagttctatcgtcgaactcatctgcaggtagcacagcggagcttttaggagaaaacgaacggttaagattggagaatttacagctcagcaaagagttgaaccaaatgaagaagctctgcggcaatatatatggtatgatgtcgacttacgcacatccttcgagcagcggtaatcaatcggcggagagtagttcgccttcgttgaagccactggatctgttagggacggaacggtccgtaggtgaatctcaggtgaaggcggtagaggaccgggagagccatgaggtaccggaggaagcgcaggcgagattattcggtttctcgataggcatggagcgtgttagggaaggggaacaagcaatgatggagcattgtcatgatttacggctgcggcaacctggaacaacggatgttaaagtagaaccgtctgatcaggaaagtaacggtgaaagtgaagagagatcgtggctgctacattgcggtggaagaaatcaaaggacttgtaattgatagtttgttggtgtgatgaaccttaattagatttagattagagattagctgtgatgataatcgagattatattagagattagctgatcaaaatcgaaagaggtgataattacgtgacggactaaatcttgaagaagcttcttcggcccctttttaatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1005" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="705" g_stop="1" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E369689" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="705" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTTCGTTGAAGCCACTGGATCTGTTAGGGACGGAACGGTCCGTAGGTGAATCTCAGGTGAAGGCGGTAGAGGACCGGGAGAGCCATGAGGTACCGGAGGAAGCGCAGGCGAGATTATTCGGTTTCTCGATAGGCATGAAGCGTGTTAGGGAAGGGGAACAAGCAATGATGGAGCATTGTCATGATTTACGGCTGCGGCAACCTGGAACAACGGATGTTAAAGTAGAACCGTCTGATCAGGAAAGTAACGGTGAAAGTGAAGAGAGATCGTGGCTGCTACATTGCGGTGGAAGAAATCAAAGGACTTGTAATTGATAGTTTGTTGGTGTGATGAACCTTAATTAGATTTAGATTAGAGATTAGCTGTGATGATAATCGAGATTATATTAGAGATTAGCTGATCAAAATCGAAAGAGGTGATAATTACGTGACGGACTAAATCTTGAAGAAGCTT</genome_strand>
        <mrna_strand>CGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTTCGTTGAAGCCACTGGATCTGTTAGGGACGGAACGGTCCGTAGGTGAATCTCAGGTGAAGGCGGTAGAGGACCGGGAGAGCCATGAGGTACCGGAGGAAGCGCAGGCGAGATTATTCGGTTTCTCGATAGGCATGGAGCGTGTTAGGGAAGGGGAACAAGCAATGATGGAGCATTGTCATGATTTACGGCTGCGGCAACCTGGAACAACGGATGTTAAAGTAGAACCGTCTGATCAGGAAAGTAACGGTGAAAGTGAAGAGAGATCGTGGCTGCTACATTGCGGTGGAAGAAATCAAAGGACTTGTAATTGATAGTTTGTTGGTGTGATGAACCTTAATTAGATTTAGATTAGAGATTAGCTGTGATGATAATCGAGATTATATTAGAGATTAGCTGATCAAAATCGAAAGAGGTGATAATTACGTGACGGACTAAATCTTGAAGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262799" ref_strand="+" ref_description="SGN-E262799 [cLEG-63-P2]">
      <seq>aagctctgcggcaatatatatggtatgatgtcgacttacgcacatccttcgagcagcggtaatcaatcggcggagagtagttcgccttcgttgaagccactggatctgttagggacggaacggtccgtaggtgaatctcaggtgaaggcggtagaggaccgggagagccatgaggtaccggaggaagcgcaggcgagattattcggtttctcgataggcatgaagcgtgttagggaaggggaacaagcaatgatggagcattgtcatgatttacggctgcggcaacctggaacaacggatgttaaagtagaaccgtctgatcaggaaagtaacggtgaaagtgaagagagatcgtggctgctacattgcggtggaagaaatcaaaggacttgtaattgatagtttgttggtgtgatgaaccttaattagatttagattagagattagctgtgatgataatcgagattatattagagattagcttgatcaaatcgaaagaggtgatatttacgtgacggactaaatcttgaagaagcttcttcggcccctttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="838" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="538" g_stop="1" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E262799" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="538" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTTCGTTGAAGCCACTGGATCTGTTAGGGACGGAACGGTCCGTAGGTGAATCTCAGGTGAAGGCGGTAGAGGACCGGGAGAGCCATGAGGTACCGGAGGAAGCGCAGGCGAGATTATTCGGTTTCTCGATAGGCATGAAGCGTGTTAGGGAAGGGGAACAAGCAATGATGGAGCATTGTCATGATTTACGGCTGCGGCAACCTGGAACAACGGATGTTAAAGTAGAACCGTCTGATCAGGAAAGTAACGGTGAAAGTGAAGAGAGATCGTGGCTGCTACATTGCGGTGGAAGAAATCAAAGGACTTGTAATTGATAGTTTGTTGGTGTGATGAACCTTAATTAGATTTAGATTAGAGATTAGCTGTGATGATAATCGAGATTATATTAGAGATTAGC-TGATCAAAATCGAAAGAGGTGATAATTACGTGACGGACTAAATCTTGAAGAAGCTT</genome_strand>
        <mrna_strand>AAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTTCGTTGAAGCCACTGGATCTGTTAGGGACGGAACGGTCCGTAGGTGAATCTCAGGTGAAGGCGGTAGAGGACCGGGAGAGCCATGAGGTACCGGAGGAAGCGCAGGCGAGATTATTCGGTTTCTCGATAGGCATGAAGCGTGTTAGGGAAGGGGAACAAGCAATGATGGAGCATTGTCATGATTTACGGCTGCGGCAACCTGGAACAACGGATGTTAAAGTAGAACCGTCTGATCAGGAAAGTAACGGTGAAAGTGAAGAGAGATCGTGGCTGCTACATTGCGGTGGAAGAAATCAAAGGACTTGTAATTGATAGTTTGTTGGTGTGATGAACCTTAATTAGATTTAGATTAGAGATTAGCTGTGATGATAATCGAGATTATATTAGAGATTAGCTTGATC-AAATCGAAAGAGGTGATATTTACGTGACGGACTAAATCTTGAAGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707188" ref_strand="+" ref_description="SGN-E707188 [FA32BC01]">
      <seq>cccttctctctttgttcctacccaccccacacccactcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtggcttctccgcctcagcctccacctccacctccgtctccgtctccgcctccgcctccgcctgctcaaccaccggtggctgtatctacctctgattcctgtgaagagcaggttctatcgtcgaactcatctgcaggtagcacagcggagcttttaggagaaaacgaacggttaagattggagaatttacagctcagcaaagagttgaaccaaatgaagaagctctgcggcaatatatatggtatgatgtcgacttacgcacatccttcgagcagcggtaatcaatcggcggagagtagttcgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1823" stop="151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1523" g_stop="1376" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="421" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="451" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="875" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E707188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1523" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTT</genome_strand>
        <mrna_strand>CCCTTCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAGGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730474" ref_strand="+" ref_description="SGN-E730474 [LA24BA03]">
      <seq>atgctacgatgcattttagggtctctctttgattcctacccaccccacacccactcgcgtctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcgttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtggcttctccgcctcagcctccacctccacctccgtctccgtctccgcctccgcctccgcctgctcaaccaccggtggctgtatctacctctgattcctgtgaagagcaagttctatcgtcgaactcatctgcaggtagcacagcggagcttttaggagaaaacgaacggttaagattggagaatttacagctcagcaaagagttgaaccaaatgaagaagctctgcggcaatatatatggtatgatgtcgacttacgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1819" stop="196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1519" g_stop="1376" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="166" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="439" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="496" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="847" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E730474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1519" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTG-TTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCAC</genome_strand>
        <mrna_strand>TCTCTCTTTGATTCCTACCCACCCCACACCCACTCGCGTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTC-GTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729795" ref_strand="+" ref_description="SGN-E729795 [LA22AE07]">
      <seq>ctctctttgttcctacccaccccacacccactcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtggcttctccgcctcagcctccacctccacctccgtctccgtctccgcctccgcctccgcctgctcaaccaccggtggctgtatctacctctgattcctgtgaagagcaagttctatcgtcgaactcatctgcaggtagcacagccggagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1818" stop="303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1518" g_stop="1376" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="416" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="603" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="719" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E729795" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1518" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAG-CGGAGCTTTT</genome_strand>
        <mrna_strand>CTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCCGGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333693" ref_strand="+" ref_description="SGN-E333693 [cTOD-22-E5]">
      <seq>tcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtggcttctccgcctcagcctccacctccacctccgtctccgtctccgcctccgcctccgcctgctcaaccaccggtggctgtatctacctctgattcctgtgaagagcaagttctatcgtcgaactcatctgcaggtagcacagcggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1787" stop="306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1487" g_stop="1376" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="385" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="606" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="684" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E333693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1487" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCT</genome_strand>
        <mrna_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369690" ref_strand="+" ref_description="SGN-E369690 [TUS-25-A5]">
      <seq>tcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtggcttctccgcctcagcctccacctccacctccgtctccgtctccgcctccgcctccgcctgctcaaccaccggtggctgtatctacctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1787" stop="362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1487" g_stop="1376" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="385" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="662" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="628" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E369690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1487" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGAT</genome_strand>
        <mrna_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729359" ref_strand="+" ref_description="SGN-E729359 [LA20DC10]">
      <seq>ccatctctctttgttcctacccaccccacacccactcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgattgtgggttctccgcctcagcctccacctacacctccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1822" stop="422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1522" g_stop="1376" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="420" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="722" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="603" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E729359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1522" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCG</genome_strand>
        <mrna_strand>CCATCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGGTTCTCCGCCTCAGCCTCCACCTACACCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247211" ref_strand="+" ref_description="SGN-E247211 [cLEF-46-E16]">
      <seq>tcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgcaaacgacagcttccggagaggtgagagaagtcagttagttgatatccagcgtcgaaaggttgccacgccgattgctactccttccgcagctgcaacagcggtggcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1787" stop="458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1487" g_stop="1376" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="385" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="758" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="532" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E247211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1487" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATT</genome_strand>
        <mrna_strand>TCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245518" ref_strand="+" ref_description="SGN-E245518 [cLEF-43-B2]">
      <seq>ccacacccactcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagttttggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagaagagatgactccacagccaatagaccggaacaaaggagagacgacagccggcgaaactccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagacggatctacttttatagtgtggaatccaacggagttcgctagggatttgcttcctaaatattttaaacataataatttttctagcttcgttaggcagctcaacacctatggatttcggaaagtagtacctgatcgatgggaattcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1797" stop="567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1497" g_stop="1376" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="395" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="904" g_stop="867" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="433" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E245518" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1497" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
          <exon e_start="904" e_stop="867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTATGTAAGTTTCTTCTTATCTGAAATCATTTGATTTGACCTGAGAGTGATAGAAAATCATTGTTTGTAGTCGATGGTTAAGTTTAGCTTTTCTTTGGTTATGCAGGGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGC</genome_strand>
        <mrna_strand>CCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGCGAAACTCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT......................................................................................................GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549901" ref_strand="+" ref_description="SGN-E549901 [TUS-6-E14]">
      <seq>ccaaagaaaagctaaacttaaccatcgactacaaacaatgattttctatcactctcaggtcaaatcaaatgatttcagataagaagaaacttacataggtgttgagctgcctaacgaagctagaaaaattattatgtttaaaatatttaggaagcaaatccctagcgaactccgttggattccacactataaaagtagatccgtcttcattccaagagatcacatcgtcaatagattgatcctcgatgagctggtaggtctttgttaaaaacggtgtcggcacagacctcggcgtttcaccggctgtcgtctctcctttgttccggtctattggctgtggagtcatctcttcttattacctgacgaactaattaagttcgtattgaatcaactcatcaaaaaaccattttctagctaatataatacatacagcaaaaataatagtaacaccaaaactacgtacttgagtgaagatcgatgaagctattctcacagatctggagccaaaactacagagaggacgaccgtcggaattttcggtgattctggaagtttccggcgccacatanaggtgagtgggtgtggggtgggtaggaacaaagagagatgggaagataattggaaaattcgaaaaagaaggaataaagataaggagaaaatattaataaaagaaaaaagcgagagtacaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="613" stop="1905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="913" g_stop="1605" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E549901" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="913" e_stop="1605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAAAAGCTAAACTTAACCATCGACTACAAACAATGATTTTCTATCACTCTCAGGTCAAATCAAATGATTTCAGATAAGAAGAAACTTACATAGGTGTTGAGCTGCCTAACGAAGCTAGAAAAATTATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTACGTACTTGAGTGAAGATCGATGAAGCTATTCTCACAGATCTGGAGCCAAAACTACAGAGAGGACGACCGTCGGAATTTTCGGTGATTCTGGAAGTTTCCGGCGCCACATAGAGGTGAGTGGGTGTGGGGTGGGTAGGAACAAAGAGAGATGGGAAGATAATTGGAAAATTCGAAAAAGAAGGAATAAAGATAAGGAGAAAATATTAATAAAAGAAAAAAGCGAGAGTACAAAGAA</genome_strand>
        <mrna_strand>CCAAAGAAAAGCTAAACTTAACCATCGACTACAAACAATGATTTTCTATCACTCTCAGGTCAAATCAAATGATTTCAGATAAGAAGAAACTTACATAGGTGTTGAGCTGCCTAACGAAGCTAGAAAAATTATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTACGTACTTGAGTGAAGATCGATGAAGCTATTCTCACAGATCTGGAGCCAAAACTACAGAGAGGACGACCGTCGGAATTTTCGGTGATTCTGGAAGTTTCCGGCGCCACATANAGGTGAGTGGGTGTGGGGTGGGTAGGAACAAAGAGAGATGGGAAGATAATTGGAAAATTCGAAAAAGAAGGAATAAAGATAAGGAGAAAATATTAATAAAAGAAAAAAGCGAGAGTACAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244951" ref_strand="+" ref_description="SGN-E244951 [cLEF-2-C18]">
      <seq>caaagaaaagctaaacttaaccatcgactacaaacaatgattttctatcactctcaggtcaaatcaaatgatttcagataagaagaaacttacataggtgttgagctgcctaacgaagctagaaaaattattatgtttaaaatatttaggaagcaaatccctagcgaactccgttggattccacactataaaagtagatccgtcttcattccaagagatcacatcgtcaatagattgatcctcgatgagctggtaggtctttgttaaaaacggtgtcggcacagacctcggcgtttcaccggctgtcgtctctcctttgttccggtctattggctgtggagtcatctcttcttattacctgacgaactaattaagttcgtattgaatcaactcatcaaaaaaccattttctagctaatataatacatacagcaaaaataatagtaacaccaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="614" stop="1670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="914" g_stop="1370" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E244951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="914" e_stop="1370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAAAGCTAAACTTAACCATCGACTACAAACAATGATTTTCTATCACTCTCAGGTCAAATCAAATGATTTCAGATAAGAAGAAACTTACATAGGTGTTGAGCTGCCTAACGAAGCTAGAAAAATTATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTA</genome_strand>
        <mrna_strand>CAAAGAAAAGCTAAACTTAACCATCGACTACAAACAATGATTTTCTATCACTCTCAGGTCAAATCAAATGATTTCAGATAAGAAGAAACTTACATAGGTGTTGAGCTGCCTAACGAAGCTAGAAAAATTATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725482" ref_strand="+" ref_description="SGN-E725482 [LA03CH03]">
      <seq>atcttcccatctctctttgttactacccaccccacacccactcacctctatgtggcgccggaaacttccagaatcaccgaaaattccgacggtcgtcctctctgtagatatggctccagatctgtgagaatagcttcatcgatcttcactcaattcgtcaggtaataagatgagatgactccacagccaatagaccggaacaaaggagagacgacagccggtgaaacgccgaggtctgtgccgacaccgtttttaacaaagacctaccagctcatcgaggatcaatctattgacgatgtgatctcttggaatgaagaccgatctacttttatagtgtggaatccaacggagttcgctgggattgctacctaaatattctaaacatataattttctagctcgttaggagctcacacctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1828" stop="703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1528" g_stop="1376" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1279" g_stop="1007" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="419" r_length="266" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E725482" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1528" e_stop="1376"/>
          <exon e_start="1279" e_stop="1007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCCATCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAAGTACGTAGTTTTGGTGTTACTATTATTTTTGCTGTATGTATTATATTAGCTAGAAAATGGTTTTTTGATGAGTTGATTCAATACGAACTTAATTAGTTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT</genome_strand>
        <mrna_strand>ATCTTCCCATCTCTCTTTGTTACTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGATATGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA................................................................................................TTCGTCAGGTAATAAGATGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACCGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCT-GGGA-TTGCTACCTAAATATTCTAAACAT-ATAA-TTTTCTAGC-TCGTTAGG-AGCTC-ACACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549842" ref_strand="+" ref_description="SGN-E549842 [TUS-6-E14](-)">
      <seq>attatgttaaaatatttaggaagcaaatccctagcgaactccgttggattccacactataaaagtagatccgtcttcatctcaagagatcacatcgtcaatagattgatcctcgatgagctggtaggtctttgttaaaaacggtgtcggcacagacctcggcgtttcaccggctgtcgtctctcctttgttccggtctattggctgtggagtcatctcttcttattacctgacgaactaattaagttcgtattgaatcaactcatcaaaaaaccattttctagctaatataatacatacagcaaaaataatagtaacaccaaaactacgtacttgagtgaagatcgatgaagctattctcacagatctggagccaaaactacagagaggacgaccgtcggaattttcggtgattctggaagtttccggcgccacatagaggtgagtgggtgtggggtgggtaggaacaaagagagatgggaagataattggaaaattcgaaaaagaaggaataaagataaggagaaaatattaataaaagaaaaaagcgagagtacaaagaaacaagcaaaaagctacgttaagcacagcttcccaaagtagaattaaattaaaaatagaactaaagtcgtagagatacttattgcctttcgggaaacttcttttacgtgttaccttatgagaggctttacggacccacagatgaataggcgatgtattgcgatactcaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="743" stop="2078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1043" g_stop="1778" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E549842" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1043" e_stop="1778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTACGTACTTGAGTGAAGATCGATGAAGCTATTCTCACAGATCTGGAGCCAAAACTACAGAGAGGACGACCGTCGGAATTTTCGGTGATTCTGGAAGTTTCCGGCGCCACATAGAGGTGAGTGGGTGTGGGGTGGGTAGGAACAAAGAGAGATGGGAAGATAATTGGAAAATTCGAAAAAGAAGGAATAAAGATAAGGAGAAAATATTAATAAAAGAAAAAAGCGAGAGTACAAAGAAACAAGCAAAAAGCTACGTTAAGCACAGCTTCCCAAAGTAGAATTAAATTAAAAATAGAACTAAAGTCGTAGAGATACTTATTGCCTTTCGGGAAACTTCTTTTACGTGTTACCTTATGAGAGGCTTTACGCACCCACAGATGAATAGGCGATGTATTTGCGCTACTCAAAATT</genome_strand>
        <mrna_strand>ATTATG-TTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATCTCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTACGTACTTGAGTGAAGATCGATGAAGCTATTCTCACAGATCTGGAGCCAAAACTACAGAGAGGACGACCGTCGGAATTTTCGGTGATTCTGGAAGTTTCCGGCGCCACATAGAGGTGAGTGGGTGTGGGGTGGGTAGGAACAAAGAGAGATGGGAAGATAATTGGAAAATTCGAAAAAGAAGGAATAAAGATAAGGAGAAAATATTAATAAAAGAAAAAAGCGAGAGTACAAAGAAACAAGCAAAAAGCTACGTTAAGCACAGCTTCCCAAAGTAGAATTAAATTAAAAATAGAACTAAAGTCGTAGAGATACTTATTGCCTTTCGGGAAACTTCTTTTACGTGTTACCTTATGAGAGGCTTTACGGACCCACAGATGAATAGGCGATGTA-TTGCGATACTCAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539229" ref_strand="+" ref_description="SGN-E539229 [TUS-58-O4](-)">
      <seq>atgctaactatttggtcatgttttgacatcaatgcttggggtgaaaccgtttactgacctattacttattgatcaaaataagggggctcatcaaaattcaagaattgaaaatgctacaaagttggttggaaatgtgggtatgaagaagtcggaattcgatagctttaggctatggtgtttggtggtttcgggcttattgcagattgtatcgttgcgatcaaacgtgcagatgtacttgaatgaagcagtattgtgttggtatcagagactgcatgcaagcaaagttcctgacttagcttatagtagggccaaggtgttcctgcacaatcactttgtatgccttgtggttctgcagttttttttgcctgcatcaatggtacttatcttccttggcttgtctcaacttggtggcgatttgcttaccaattacgaaggggtatgtagcgtattgccttgttctctgctagacaaagaggtggctttgtttatggcctggtgggttctctttgtttggacaatatatagttcagtcacccttgctctatttagacagggaatcttgtgtgtatcttgatctattgtttacacgactcaccatcaggaagccgaggtctctcattttatgagcttttccacaagtgtgtcacgatgtaactatacaacccttcaactgatctttttttttccctcaaaatattccttccactaagagtttcaattttgtgacacttctgaaatttttatggaatattttgtgataaacttttgaatgtttttatagaatactattttgttttctcctctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10745" stop="9339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10445" g_stop="9640" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="806" polyA_stop="818"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E539229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10445" e_stop="9640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAATGGTACTTATCTTCCTTGGCTTGTCTCAACTTGGTGGCGATTTGCTTACCAATTACGAAGGGGTATGTAGCGTATTGCCTTGTTCTCTGCTAGACAAAGAGGTGGCTTTGTTTATGGCCTGGTGGGTTCTCTTTGTTTGGACAATATATAGTTCAGTCACCCTTGCTCTATTTAGACAGGGAATCTTGTGTGTATCTTGATCTATTGTTTACACGACTCACCATCAGGAAGCCGAGGTCTCTCATTTTATGAGCTTTTCCACAAGTGTGTCACGATGTAACTATACAACCCTTCAACTGATCTTTTTTTTTCCCTCAAAATATTCCTTCCACTAAGAGTTTCAATTTTGTGACACTTCTGAAATTTTTATGGAATATTTTGTGATAAACTTTTGAATGTTTTTATAGAATACTATTTTGTTTTCTCCTCTC</genome_strand>
        <mrna_strand>ATGCTAACTATTTGGTCAT-GTTTTGACATCAATGCTTGGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAATGGTACTTATCTTCCTTGGCTTGTCTCAACTTGGTGGCGATTTGCTTACCAATTACGAAGGGGTATGTAGCGTATTGCCTTGTTCTCTGCTAGACAAAGAGGTGGCTTTGTTTATGGCCTGGTGGGTTCTCTTTGTTTGGACAATATATAGTTCAGTCACCCTTGCTCTATTTAGACAGGGAATCTTGTGTGTATCTTGATCTATTGTTTACACGACTCACCATCAGGAAGCCGAGGTCTCTCATTTTATGAGCTTTTCCACAAGTGTGTCACGATGTAACTATACAACCCTTCAACTGATCTTTTTTTTTCCCTCAAAATATTCCTTCCACTAAGAGTTTCAATTTTGTGACACTTCTGAAATTTTTATGGAATATTTTGTGATAAACTTTTGAATGTTTTTATAGAATACTATTTTGTTTTCTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539232" ref_strand="+" ref_description="SGN-E539232 [TUS-58-O4]">
      <seq>aagttgttttttgcaattttcatgggctgtgtttcatgttttttgtatatgccagcagtgagaattgctcatgccttttggcttggaactgatcagcttcgttgtaatttgcctattgtttcgtgtggatggtttgcgcgattgcttcttcatgctaactatttggtcatggttttgacatcaatgctttgggtgaaaccgtttactgacctattacttattgatcaaaataagggggctcatcaaaattcaagaattgaaaatgctacaaagttggttggaaatgtgggtatgaagaagtcggaattcgatagctttaggctatggtgtttggtggtttcgggcttattgcagattgtatcgttgcgatcaaacgtgcagatgtacttgaatgaagcagtattgtgttggtatcagagactgcatgcaagcaaagttcctgacttagcttatagtagggccaaggtgttcctgcacaatcactttgtatgccttgtggttctgcagttttttttgcctgcatcaatggtacttatcttccttggcttgtctcaacttggtggcgatttgcttaccaattacgaaggggtatgtagcgtattgccttgttctctgctagacaaagaggtggctttgtttatggcctggtgggttctctttgtttggacatatatagttcagtcacccttgctctatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10896" stop="9596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10596" g_stop="9896" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E539232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10596" e_stop="9896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTTTTTTGCAATTTTCATGGGCTGTGTTTCATGTTTTTTGTATATGCCAGCAGTGAGAATTGCTCATGCCTTTTGGCTTGGAACTGATCAGCTTCGTTGTAATTTGCCTATTGTTTCGTGTGGATGGTTTGCGCGATTGCTTCTTCATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAATGGTACTTATCTTCCTTGGCTTGTCTCAACTTGGTGGCGATTTGCTTACCAATTACGAAGGGGTATGTAGCGTATTGCCTTGTTCTCTGCTAGACAAAGAGGTGGCTTTGTTTATGGCCTGGTGGGTTCTCTTTGTTTGGACAATATATAGTTCAGTCACCCTTGCTCTATTTAG</genome_strand>
        <mrna_strand>AAGTTGTTTTTTGCAATTTTCATGGGCTGTGTTTCATGTTTTTTGTATATGCCAGCAGTGAGAATTGCTCATGCCTTTTGGCTTGGAACTGATCAGCTTCGTTGTAATTTGCCTATTGTTTCGTGTGGATGGTTTGCGCGATTGCTTCTTCATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAATGGTACTTATCTTCCTTGGCTTGTCTCAACTTGGTGGCGATTTGCTTACCAATTACGAAGGGGTATGTAGCGTATTGCCTTGTTCTCTGCTAGACAAAGAGGTGGCTTTGTTTATGGCCTGGTGGGTTCTCTTTGTTTGGAC-ATATATAGTTCAGTCACCCTTGCTCTATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283261" ref_strand="+" ref_description="SGN-E283261 [cLER-12-G3]">
      <seq>agttgttttttgcaattttcatgggctgtgtttcatgttttttgtatatgccagcagtgagaattgctcatgccttttggcttggaactgatcagcttcgttgtaatttgcctattgtttcgtgtggatggtttgcgcgattgcttcttcatgctaactatttggtcatggttttgacatcaatgctttgggtgaaaccgtttactgacctattacttattgatcaaaataagggggctcatcaaaattcaagaattgaaaatgctacaaagttggttggaaatgtgggtatgaagaagtcggaattcgatagctttaggctatggtgtttggtggtttcgggcttattgcagattgtatcgttgcgatcaaacgtgcagatgtacttgaatgaagcagtattgtgttggtatcagagactgcatgcaagcaaagttcctgacttagcttatagtagggccaaggtgttcctgcacaatcactttgtatgccttgtggttctgcagttttttttgcctgcatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10895" stop="9770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10595" g_stop="10070" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E283261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10595" e_stop="10070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTTTTTGCAATTTTCATGGGCTGTGTTTCATGTTTTTTGTATATGCCAGCAGTGAGAATTGCTCATGCCTTTTGGCTTGGAACTGATCAGCTTCGTTGTAATTTGCCTATTGTTTCGTGTGGATGGTTTGCGCGATTGCTTCTTCATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAAT</genome_strand>
        <mrna_strand>AGTTGTTTTTTGCAATTTTCATGGGCTGTGTTTCATGTTTTTTGTATATGCCAGCAGTGAGAATTGCTCATGCCTTTTGGCTTGGAACTGATCAGCTTCGTTGTAATTTGCCTATTGTTTCGTGTGGATGGTTTGCGCGATTGCTTCTTCATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313338" ref_strand="+" ref_description="SGN-E313338 [cTOA-13-M14]">
      <seq>agagagaacaaaaaagcgaaaaacacagatcaacccacctggtggtcttccggcaatacaccggcccggaatttcacatttccgacggcagcaccggtcggagaacaattacagatcgactcagttcatatatatatatatggatccgaagaagaaggattttgaaggaaaatacgaatcgtcgagtaacagtttgtattggactaatgaaaggcatgttcattttctgaattcaattgaagcttcttttgttcaaactttgctggagaataatagtaacgccgcccctattcttccgctcgaccgccatttgcccgatagtacagattcaacccttgatactcctaaagaaagacgacgcagattttctacctcagatatcaacatgagcagcggaagcagaatagatgttgagaaaaaaactagaagaatgtcatccatcatttcctcacaagatcaggtggtcccacaatataagcatggaagaggagataaggatgctgatggtcaccctagtgttcctctcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17575" stop="20049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17875" g_stop="18251" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18252" i_stop="19315" i_length="1064">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19316" g_stop="19398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="460" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19399" i_stop="19669" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19670" g_stop="19749" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="540" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E313338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17875" e_stop="18251"/>
          <exon e_start="19316" e_stop="19398"/>
          <exon e_start="19670" e_stop="19749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAACAAAAAAGCGAAAAACACAGATCAACCCACCTGGTGGTCTTCCGGCAATACACCGGCCCGGAATTTCACATTTCCGACGGCAGCACCGGTCGGAGAACAATTACAGATCGACTCAGTTCATATATATATATATGGATCCGAAGAAGAAGGATTTTGAAGGAAAATACGAATCGTCGAGTAACAGTTTGTATTGGACTAATGAAAGGCATGTTCATTTTCTGAATTCAATTGAAGCTTCTTTTGTTCAAACTTTGCTGGAGAATAATAGTAACGCCGCCCCTATTCTTCCGCTCGACCGCCATTTGCCCGATAGTACAGATTCAACCCTTGATACTCCTAAAGAAAGACGACGCAGATTTTCTACCTCAGGTAACTGAACAAAAAAATTATTCCTAATTTATTTAATAGTAAATTATTAAAGTATGTTAGTTAGCCGAAAGCTATTTAGCTAGCCTTCGGCTAACAGAAGTTCGTTGCATGCTGTACTAGTAATGTGTGCGCAAAAAATATTGTACATACTAGTCCTGCAATCTGCGAGGAAACAGATCTGGAATTATATTATTATTATATATATATATATATATATTATATAAATTTTCGCGAGATTGAGTTGATTTTGAAACGTATATATATAAAATATTTACTTATATTTATTTTTAATACGATAGAATTTTTAAAATTTTGAATTTTACCGAACTCCGGATTAGATCCGGAGATGGGTCTACGCATAATTTAATTTGTGTTTTGTGGTATTTTTTAGAAGATCCAAAGGGATAAAAGTGCAAGCTAATTAATTAAATGGGGTTTTTGCTTCGTTCAAAAAAATTAAAATAATTGGATACTTTTTGTGCGATTGAAAATTAGTGATCATCAGAAATTGAACCACACAGATAAAATAGGCTCTCAGTTCTATTTTTCATTTTAGTATGTTTAAGAAAAAGGAATGATTTTCTATTTTTTTTGATAATTTTTTAATTTTAACTTTTTTAATGACACGTTTAAGATAGTAAAATTTAAAAATATTTTAGTATACTTTACACATTTAAGATAAAATATAAAATTTTATTTATTTTCTTAAATTACTTATCAAATCATAACCATAAACAAACAGGTTAAAACAAAAAAACTGCTATTTACTAAGAGATATTTTTTTTTATCGTCATAGGGTACGTAGCAATAGTCTTTTTCTTCTCTCTCTAACACACATATATAATTCAAGCCAAGTAACGTATCTTTTACCTTAAATTCATCTATTGCCCTAAATATATGTATTTTATTTTTTCCTTTCGCAAATCGTATATACATAGATACAGTACATTATATTTAAATACGTGTGTTACATGTGTAGCTGAAATAAATACATAAAAAAAAAAGTGTTCCCTTTGAACTAATATTTTTTTTTTGTATAAATGTTGCAAAAACTATATTATAAGATATCAACATGAGCAGCGGAAGCAGAATAGATGTTGAGAAAAAAACTAGAAGAATGTCATCCATCATTTCCTCACAAGATCAGGTTTGTTTTATTTATTTATTTATTTATTAATATTATTCATATCATACATTAATATTTTATCAACCTTTCCCCACATATTTGAAAACATTCAATAAATATGTCCTATTGAGTGTCTTTTATTAAAAAATAATAAATTGCCACGTACTTTGATCTAGCTCAATATGACAGCTTATATATCCACCAATGAATATTATTAAATTCTACTATTAGGATAAGTCATTAATTAATATTAGTAGATATTAATTATATCTAATGTATTATATGGTTACAGGTGGTCCCACAATATAAGCATGGAAGAGGAGATAAGGATGCTGATGGTCACCCTAGTGTTCCTCTCAATTAAAAAAAAAA</genome_strand>
        <mrna_strand>AGAGAGAACAAAAAAGCGAAAAACACAGATCAACCCACCTGGTGGTCTTCCGGCAATACACCGGCCCGGAATTTCACATTTCCGACGGCAGCACCGGTCGGAGAACAATTACAGATCGACTCAGTTCATATATATATATATGGATCCGAAGAAGAAGGATTTTGAAGGAAAATACGAATCGTCGAGTAACAGTTTGTATTGGACTAATGAAAGGCATGTTCATTTTCTGAATTCAATTGAAGCTTCTTTTGTTCAAACTTTGCTGGAGAATAATAGTAACGCCGCCCCTATTCTTCCGCTCGACCGCCATTTGCCCGATAGTACAGATTCAACCCTTGATACTCCTAAAGAAAGACGACGCAGATTTTCTACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACATGAGCAGCGGAAGCAGAATAGATGTTGAGAAAAAAACTAGAAGAATGTCATCCATCATTTCCTCACAAGATCAG...............................................................................................................................................................................................................................................................................GTGGTCCCACAATATAAGCATGGAAGAGGAGATAAGGATGCTGATGGTCACCCTAGTGTTCCTCTCAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348122" ref_strand="+" ref_description="SGN-E348122 [cTOF-31-P22]">
      <seq>agcgaaaaacacgatcaacccacctggtggtcttccggcaatacaccggcccggaatttcacatttccgacggcagcaccggtcggagaaacaattacagatcgactcagttcatatatatatatatggatccgaagaagaaggattttgaaggaaaatacgaatcgtcgagtaacagtttgtattggactaatgaaaggcatgttcattttctgaattcaattgaagcttcttttgttcaaactttgctggagaataatagtaacgccgcccctattcttccgctcgaccgccatttgcccgatagtacagattcaacccttgatactcctaaagaaagacgacgcagattttctacctcagatatcaacatgagcagcggaagcagaatagatgttgagaaaaaaactagaagaatgtcatccatcatttcctcacaagatncaggtggtcccacaatataagcatggaagaggagataaggatgctgatggtcaccctagtgttcctctcaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17589" stop="20048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17889" g_stop="18251" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18252" i_stop="19315" i_length="1064">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19316" g_stop="19398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="447" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19399" i_stop="19669" i_length="271">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19670" g_stop="19748" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="526" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E348122" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17889" e_stop="18251"/>
          <exon e_start="19316" e_stop="19398"/>
          <exon e_start="19670" e_stop="19748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAAAAACACAGATCAACCCACCTGGTGGTCTTCCGGCAATACACCGGCCCGGAATTTCACATTTCCGACGGCAGCACCGGTCGGAG-AACAATTACAGATCGACTCAGTTCATATATATATATATGGATCCGAAGAAGAAGGATTTTGAAGGAAAATACGAATCGTCGAGTAACAGTTTGTATTGGACTAATGAAAGGCATGTTCATTTTCTGAATTCAATTGAAGCTTCTTTTGTTCAAACTTTGCTGGAGAATAATAGTAACGCCGCCCCTATTCTTCCGCTCGACCGCCATTTGCCCGATAGTACAGATTCAACCCTTGATACTCCTAAAGAAAGACGACGCAGATTTTCTACCTCAGGTAACTGAACAAAAAAATTATTCCTAATTTATTTAATAGTAAATTATTAAAGTATGTTAGTTAGCCGAAAGCTATTTAGCTAGCCTTCGGCTAACAGAAGTTCGTTGCATGCTGTACTAGTAATGTGTGCGCAAAAAATATTGTACATACTAGTCCTGCAATCTGCGAGGAAACAGATCTGGAATTATATTATTATTATATATATATATATATATATTATATAAATTTTCGCGAGATTGAGTTGATTTTGAAACGTATATATATAAAATATTTACTTATATTTATTTTTAATACGATAGAATTTTTAAAATTTTGAATTTTACCGAACTCCGGATTAGATCCGGAGATGGGTCTACGCATAATTTAATTTGTGTTTTGTGGTATTTTTTAGAAGATCCAAAGGGATAAAAGTGCAAGCTAATTAATTAAATGGGGTTTTTGCTTCGTTCAAAAAAATTAAAATAATTGGATACTTTTTGTGCGATTGAAAATTAGTGATCATCAGAAATTGAACCACACAGATAAAATAGGCTCTCAGTTCTATTTTTCATTTTAGTATGTTTAAGAAAAAGGAATGATTTTCTATTTTTTTTGATAATTTTTTAATTTTAACTTTTTTAATGACACGTTTAAGATAGTAAAATTTAAAAATATTTTAGTATACTTTACACATTTAAGATAAAATATAAAATTTTATTTATTTTCTTAAATTACTTATCAAATCATAACCATAAACAAACAGGTTAAAACAAAAAAACTGCTATTTACTAAGAGATATTTTTTTTTATCGTCATAGGGTACGTAGCAATAGTCTTTTTCTTCTCTCTCTAACACACATATATAATTCAAGCCAAGTAACGTATCTTTTACCTTAAATTCATCTATTGCCCTAAATATATGTATTTTATTTTTTCCTTTCGCAAATCGTATATACATAGATACAGTACATTATATTTAAATACGTGTGTTACATGTGTAGCTGAAATAAATACATAAAAAAAAAAGTGTTCCCTTTGAACTAATATTTTTTTTTTGTATAAATGTTGCAAAAACTATATTATAAGATATCAACATGAGCAGCGGAAGCAGAATAGATGTTGAGAAAAAAACTAGAAGAATGTCATCCATCATTTCCTCACAAGAT-CAGGTTTGTTTTATTTATTTATTTATTTATTAATATTATTCATATCATACATTAATATTTTATCAACCTTTCCCCACATATTTGAAAACATTCAATAAATATGTCCTATTGAGTGTCTTTTATTAAAAAATAATAAATTGCCACGTACTTTGATCTAGCTCAATATGACAGCTTATATATCCACCAATGAATATTATTAAATTCTACTATTAGGATAAGTCATTAATTAATATTAGTAGATATTAATTATATCTAATGTATTATATGGTTACAGGTGGTCCCACAATATAAGCATGGAAGAGGAGATAAGGATGCTGATGGTCACCCTAGTGTTCCTCTCAATTAAAAAAAAA</genome_strand>
        <mrna_strand>AGCGAAAAACAC-GATCAACCCACCTGGTGGTCTTCCGGCAATACACCGGCCCGGAATTTCACATTTCCGACGGCAGCACCGGTCGGAGAAACAATTACAGATCGACTCAGTTCATATATATATATATGGATCCGAAGAAGAAGGATTTTGAAGGAAAATACGAATCGTCGAGTAACAGTTTGTATTGGACTAATGAAAGGCATGTTCATTTTCTGAATTCAATTGAAGCTTCTTTTGTTCAAACTTTGCTGGAGAATAATAGTAACGCCGCCCCTATTCTTCCGCTCGACCGCCATTTGCCCGATAGTACAGATTCAACCCTTGATACTCCTAAAGAAAGACGACGCAGATTTTCTACCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACATGAGCAGCGGAAGCAGAATAGATGTTGAGAAAAAAACTAGAAGAATGTCATCCATCATTTCCTCACAAGATNCAG...............................................................................................................................................................................................................................................................................GTGGTCCCACAATATAAGCATGGAAGAGGAGATAAGGATGCTGATGGTCACCCTAGTGTTCCTCTCAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276301" ref_strand="+" ref_description="SGN-E276301 [cLEN-21-O20]">
      <seq>aagctccgtcttctccacaaattccccaaatccagcagcactagatgtgctggtgcaagaaatcgcagatgctgctaaccgcaacggccgggtattcgtatacggtgtgggccgtgaaggattgatgctgaaagccctatcgatgaggcttttccatctcggtttatcatcacactgcgtcttcgacatgaacactcctccaattggtccctccgacctcctaatcgcttccgccggtccaggtggtttctccaccgtcgatgcgatctccggagtggccaaatctagcggcgctcgtgtactgttgttgacagctcagcctcattcgggatcttcaatgaagtacgcgagtgttgttgcttatattccggctcagaccatggctgatgatgatgccggtgacggagagaaggaacggccgctgcttccgatggggagtgtgtatgaaggagcgatgtttgtgctgtttgagatggttgttttcaagttgggtgaaattttgaagcagagtcctgaagctgtgagagcacgccatacaaatctggagtaagcacaagttataaacatacatttncgtactgtaaatctccgtgcttcatgcttaatctgtttgattatacttactgaattcagtacttcgatgaacataaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24161" stop="22909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23861" g_stop="23209" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E276301" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23861" e_stop="23209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTATAAACATACATTTCCGTACTGTAAATCTCCGTGCTTCATGCTTAATCTGTTTGATTATACTTACTGAATTCAGTACTACGATGAACATAAATT</genome_strand>
        <mrna_strand>AAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTATAAACATACATTTNCGTACTGTAAATCTCCGTGCTTCATGCTTAATCTGTTTGATTATACTTACTGAATTCAGTACTTCGATGAACATAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344955" ref_strand="+" ref_description="SGN-E344955 [cTOF-22-E22]">
      <seq>aaactctcttttttcgcgtggagataaagagacgttagccacaactttggaagagaattagcgtcaaatggccgaatcgaaccctagagaagaatcagctctactagcttcaaaaatatgcgatcagataagctccgtcttctccacaaattccccaaatccagcagcactagatgtgctggtgcaagaaatcgcagatgctgctaaccgcaacggccgggtattcgtatacggtgtgggccgtgaaggattgatgctgaaagccctatcgatgaggcttttccatctcggtttatcatcacactgcgtcttcgacatgaacactcctccaattggtccctccgacctcctaatcgcttccgccggtccaggtggtttctccaccgtcgatgcgatctccggagtggccaaatctagcggcgctcgtgtactgttgttgacagctcagcctcattcgggatcttcaatgaagtacgcgagtgttgttgcttatattccggctcagaccatggctgatgatgatgccggtgacggagagaaggaacggccgctgcttccgatggggagtgtgtatgaaggagcgatgtttgtgctgtttgagatggttgttttcaagttgggtgaaattttgaagcagagtcctgaagctgtgagagcacgccatacaaatctggagtaagcacaagttataaacatacatttncgtactgtaaatctncgtgcttcatgcttaatctgnttgattatacttactgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24290" stop="22934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23990" g_stop="23227" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E344955" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23990" e_stop="23227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTCTTTTTTCGCGTGGAGATAAAGAGACGTTAGCCACAACTTTGGAAGAGAATTAGCGTCAAATGGCCGAATCGAACCCTAGAGAAGAATCAGCTCTACTAGCTTCAAAAATATGCGATCAGATAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTATAAACATACATTTCCGTACTGTAAATCTCCGTGCTTCATGCTTAATCTGTTTGATTATACTTACTGAATTCAGTA</genome_strand>
        <mrna_strand>AAACTCTCTTTTTTCGCGTGGAGATAAAGAGACGTTAGCCACAACTTTGGAAGAGAATTAGCGTCAAATGGCCGAATCGAACCCTAGAGAAGAATCAGCTCTACTAGCTTCAAAAATATGCGATCAGATAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTATAAACATACATTTNCGTACTGTAAATCTNCGTGCTTCATGCTTAATCTGNTTGATTATACTTACTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550722" ref_strand="+" ref_description="SGN-E550722 [TUS-50-F11]">
      <seq>taagctccgtcttctccacaaattccccaaatccagcagcactagatgtgctggtgcaagaaatcgcagatgctgctaaccgcaacggccgggtattcgtatacggtgtgggccgtgaaggattgatgctgaaagccctatcgatgaggcttttccatctcggtttatcatcacactgcgtcttcgacatgaacactcctccaattggtccctccgacctcctaatcgcttccgccggtccaggtggtttctccaccgtcgatgcgatctccggagtggccaaatctagcggcgctcgtgtactgttgttgacagctcagcctcattcgggatcttcaatgaagtacgcgagtgttgttgcttatattccggctcagaccatggctgatgatgatgccggtgacggagagaaggaacggccgctgcttccgatggggagtgtgtatgaaggagcgatgtttgtgctgtttgagatggttgttttcaagttgggtgaaattttgaagcagagtcctgaagctgtgagagcacgccatacaaatctggagtaagcacaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24162" stop="23002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23862" g_stop="23302" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E550722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23862" e_stop="23302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTA</genome_strand>
        <mrna_strand>TAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688402" ref_strand="+" ref_description="SGN-E688402 [t3_tus_50_f11]">
      <seq>taagctccgtcttctccacaaattccccaaatccagcagcactagatgtgctggtgcaagaaatcgcagatgctgctaaccgcaacggccgggtattcgtatacggtgtgggccgtgaaggattgatgctgaaagccctatcgatgaggcttttccatctcggtttatcatcacactgcgtcttcgacatgaacactcctccaattggtccctccgacctcctaatcgcttccgccggtccaggtggtttctccaccgtcgatgcgatctccggagtggccaaatctagcggcgctcgtgtactgttgttgacagctcagcctcattcgggatcttcaatgaagtacgcgagtgttgttgcttatattccggctcagaccatggctgatgatgatgccggtgacggagagaaggaacggccgctgcttccgatggggagtgtgtatgaaggagcgatgtttgtgctgtttgagatggttgttttcaagttgggtgaaattttgaagcagagtcctgaagctgtgagagcacgccatacaaatctggagtaagcacaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24162" stop="23002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23862" g_stop="23302" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E688402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23862" e_stop="23302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTA</genome_strand>
        <mrna_strand>TAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321687" ref_strand="+" ref_description="SGN-E321687 [cTOB-25-P24]">
      <seq>tatttttgaaaagtaacgatagtgtaaaactctcttttttcgcgtggagataaagagacgttagccacaactttggaagagaattagcgtcaaatggccgaatcgaaccctagagaagaatcagctctactagcttcaaaaatatgcgatcagataagctccgtcttctccacaaattccccaaatccagcagcactagatgtgctggtgcaagaaatcgcagatgctgctaaccgcaacggccgggtattcgtatacggtgtgggccgtgaaggattgatgctgaaagccctatcgatgaggcttttccatctcggtttatcatcacactgcgtcttcgacatgaacactcctccaattggtccctccgacctcctaatcgcttccgccggtccaggtggtttctccaccgtcgatgcgatctccggagtggccaaatctagcggcgctcgtgtactgttgttgacagctcagcctcattcgggatcttcaatgaagtacgcgagtgttgntgcttatattccggctcanaccatggctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24316" stop="23170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24016" g_stop="23470" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E321687" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24016" e_stop="23470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGAAAAGTAACGATAGTGTAAAACTCTCTTTTTTCGCGTGGAGATAAAGAGACGTTAGCCACAACTTTGGAAGAGAATTAGCGTCAAATGGCCGAATCGAACCCTAGAGAAGAATCAGCTCTACTAGCTTCAAAAATATGCGATCAGATAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATG</genome_strand>
        <mrna_strand>TATTTTTGAAAAGTAACGATAGTGTAAAACTCTCTTTTTTCGCGTGGAGATAAAGAGACGTTAGCCACAACTTTGGAAGAGAATTAGCGTCAAATGGCCGAATCGAACCCTAGAGAAGAATCAGCTCTACTAGCTTCAAAAATATGCGATCAGATAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGNTGCTTATATTCCGGCTCANACCATGGCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368569" ref_strand="+" ref_description="SGN-E368569 [TUS-23-F2](-)">
      <seq>actgcaactgctcgaaggattgagttacattgagaaaataaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatgataaaaaaatttcaccggatataatagcagtaggttttttctgagaatttcagtgttaactcacatgtttattatataaagttctagaataatttagtatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29271" stop="23844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28971" g_stop="28930" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="157" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="331" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24147" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="774" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="788"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E368569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28971" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</genome_strand>
        <mrna_strand>ACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAAT-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221150" ref_strand="+" ref_description="SGN-E221150 [cLEL-22-G24](-)">
      <seq>atgagtatcgaagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatgataaaaaaatttcaccggatataatagcagtaggttttttctgagaatttcagtgttaactcacatgtttattatataaagttctagaataatttagtatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24835" stop="23844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24535" g_stop="24147" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="407"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E221150" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24535" e_stop="24147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</genome_strand>
        <mrna_strand>ATGAGTATCGAAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392649" ref_strand="+" ref_description="SGN-E392649 [TUS-36-F1](-)">
      <seq>atcaccgcatgattgatgatgatggttctttatctctaaaacggggtagttttgaggaaggcaagggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaactagagtattaatgatgataaaaaaatttcaccggatataatagcagtaggttttttctgagaatttcagtgtaaagtcacatgtttattatataaagttctagaataatttaaaggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28715" stop="23853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28415" g_stop="28392" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="198" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24589" g_stop="24153" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="635" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="655"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E392649" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28415" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTA</genome_strand>
        <mrna_strand>ATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCTAAAACGGGGTAGTTTTGAGGAAGGCAAGGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTAGAGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTAAAGTCACATGTTTATTATATAAAGTTCTAGAATAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542798" ref_strand="+" ref_description="SGN-E542798 [TUS-64-E14](-)">
      <seq>gtacttgctcaacatggttatattgaagaactcatgaaggttccatgtaaagtagctaataggtaagctctatagtcctgctttttgatggactgatcattcatctgaatttagagaggattgtttatattggtctctgaatgatagcttatattgcctaaacctatgcaagttcatttcttcctcttgacttttcctgatttcgttgatgtgataggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatgataaaaaaatttcaccggaaaaaaaaaaaaaaaagaaaaaaaaaactcgagggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25947" stop="23923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25257" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24589" g_stop="24220" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="761" r_length="370" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="777"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E542798" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25257"/>
          <exon e_start="24589" e_stop="24220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCA</genome_strand>
        <mrna_strand>GTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712368" ref_strand="+" ref_description="SGN-E712368 [FB04CF05]">
      <seq>ctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatgataaaaaaatttcacccggatataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29306" stop="23923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="76" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="192" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="366" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24223" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="734" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E712368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCA-CCGGATATAATA</genome_strand>
        <mrna_strand>GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCCGGATATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213341" ref_strand="+" ref_description="SGN-E213341 [cLEC-71-A11]">
      <seq>tcacaatgggcttcatgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattggtgattttattttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29813" stop="23949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29513" g_stop="29472" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="97" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="213" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="387" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24249" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="728" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E213341" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29513" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAATGGGCTTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATG</genome_strand>
        <mrna_strand>TCACAATGGGCTTCATGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGGTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368570" ref_strand="+" ref_description="SGN-E368570 [TUS-23-F2]">
      <seq>ttcatgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattgttgatttttatttattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29802" stop="23949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29502" g_stop="29472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="86" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="202" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24249" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="717" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E368570" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29502" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATG</genome_strand>
        <mrna_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTTATTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578377" ref_strand="+" ref_description="SGN-E578377 [LE12DB03]">
      <seq>gttcttctcttttatggtgaccagggtaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacttcatantaccgcatgagtgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcacacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaggaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattggtgattttattntattttcatactccctttgtttatatccgtcttacttctgcctgtaacttgtgtattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29298" stop="23953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="70" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="186" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="360" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24253" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="697" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E578377" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAAT</genome_strand>
        <mrna_strand>GGTGACCAGGGTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACTTCATANTACCGCATGAGTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCACACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGGTGATTTTATTNTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260249" ref_strand="+" ref_description="SGN-E260249 [cLEG-53-D13]">
      <seq>tgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgctgctgttaaggacatagagattaaagaaggtagcatggacacttctaaatagtactcctcctccccaagccttggagctcagatcaaaccagatgaatattggtgattttattttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29263" stop="24007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28963" g_stop="28930" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="324" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24307" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="607" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E260249" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28963" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTT</genome_strand>
        <mrna_strand>TGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAAGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGGTGATTTTATTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243469" ref_strand="+" ref_description="SGN-E243469 [cLED-34-D15]">
      <seq>ttcatgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatcttcatcattgagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29802" stop="24126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29502" g_stop="29472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="86" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="202" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24426" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="540" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E243469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29502" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCT</genome_strand>
        <mrna_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237890" ref_strand="+" ref_description="SGN-E237890 [cLED-18-L22]">
      <seq>ttcatgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgatggaaggtctgattcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29802" stop="24141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29502" g_stop="29472" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="86" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="202" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24441" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="525" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E237890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29502" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCT</genome_strand>
        <mrna_strand>TTCATGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392650" ref_strand="+" ref_description="SGN-E392650 [TUS-36-F1]">
      <seq>ctttttgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaactccgtaaaaagggcgaagaagcatcagacgatgaggatctggtgggaaatgagggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29803" stop="24153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29503" g_stop="29472" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="87" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="203" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="377" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24453" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="514" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E392650" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29503" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGG</genome_strand>
        <mrna_strand>CTTTTTGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGAGGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235879" ref_strand="+" ref_description="SGN-E235879 [cLED-16-I3]">
      <seq>cttcatgagatctgttcgtctcttttatgtatggtaaccagtttaactgcaactgctcgaaggattgagttacattgagaaaatgaaaagaggacatgtaaagtgggatgaggcaaatttgggagaaattgaggcaaataaaccggtgaggcagaaaattactgaaccaaagacaccatatcaccgcatgattgatgatgatggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcagattctggttcaaggaaggttaaaaacttcaaggaccacagacgagcacattatgatgagtatcggagagtcaaagaacttcgtaaaaagggcgaagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29803" stop="24189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29503" g_stop="29472" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28984" g_stop="28930" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="87" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28392" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="203" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25430" g_stop="25257" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="377" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24589" g_stop="24489" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="478" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E235879" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29503" e_stop="29472"/>
          <exon e_start="28984" e_stop="28930"/>
          <exon e_start="28507" e_stop="28392"/>
          <exon e_start="25430" e_stop="25257"/>
          <exon e_start="24589" e_stop="24489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGAGATCTGTTCGTCTCTTTTATGTATGTATGTATCTTCTTCGTTTAATCTTGCTTTTGGACGAATTTATTTCTTTGTTGTGCATATTCTGTGGATTTTTGTATTTGAGCGAACTGAATTTGGGGGTTTTTGGGCCCTAAAGCCACTGCTTTAGTGGCTGTAGGGTTGAGCCGCCCTCGAGGTGTATCGGAAACAGCCTCTTTGCCTACCTAAGGTCTGTGTGCGCTGTATCTTCTTGTGGATTAGTCTGTATGATGTTGTTGTTGATTATCTCAATAAGCATGTCGATTTATCATAACCTATGCAGTCTCCAGGCACTTATCATCCTTACACCTTCCAGATGATGAAAAATATTTACTTTAATCTATTAAAAACTGAGCAATTTGTGTAAATGGAGTGTAAATGTTTGTCCAAGTAGAAATTCTCAGGGGTCTTTTGGAACCTGCCATGATATTGTCTACAATGAATTCTTCTGCGTGTTTGACATGTTTATTTTCTTCTTATGTTGGTTCAGGGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAAGTAATGTCTCTTCCTGTTCTGTGAATTCAGTTTATATCTTGGGCTTGCTTAAACTCAGATTTCAGTTTCTAATGAATGCCACATAGACAAGATTGAGAAAAGAAATACTGTATGCACGTATTAATTTACTGTAAGTAGACTGAATGTGCATGCTTTCTCCTGTATATGTGTTCCATGACATGTTTAATACCTTGAGTTATACTTTACCTGATCACAAGAATAAAAAATGGTTACCTTGATATATTATTGCAAGCTCAGTTATTTTTGGGTATGCATTGGTGCTAATGTTGTGTTCTCATCATGATTTTAATTTTTGTTTTATCTGTTCTTTTGAAAAAACCGGACCTATATTGGTCTGCCTGCGGTATGAGTATGGTTAGCAATGAAAATTTAATCGCTTCGAACATTTTCTGTTGGTGTAGAAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATGGTATGTTCATGAAATTGACTCTTCTTTTTCTGTCTGTTTGTCTTAGTTCTGAATCTTTTGTCTCATGCAAGCTTCTTACATTGATCAAATAATGTGGTGATGAGCCCCGAATTGTCATTTTCTGCCTTTCATATGCCTATCCGTCTCTATTTAATAGCATTTAATGCCTAGCAGGCTTATAGATAGATGAAACATGATTAATGTAATAACCCAGTTTTATACACTTTTTTGTCTTCTTTTTCTTCTTTTTTCTATTTTTCTTACCCTGATGATTTATGCACTTGTTCCTTTTTTGAATAACAAAGAAATCCTTTGAGGGATAATGGCACACGGTTCCTTTTTCCCAACTATGTACTCTTTTCTACTTAAATACTAGGCTTTGTATGCGACGGGGTTCAAACCCATGACATGTGCCTAACAAATCACACATCACACATCGTGCTCTTACCACTAGACCAAAGCCCAACAGAAATATACCCATTATAATCCCACAATTGGGGGCTGGGGAGGATAGGATGTATGTAGACCTTACCTCTACCTTTGTGGGGCACTAGGCCAAAGCCCCTGGGGGATGATTTATGCGCGTACTGATCTTCTTTTCTTCCCTTTCTAGATTAGTTTCCATGAGAGGGATGATTTGTGTGGAAACATTTTAAGAAGTCAATTTGCTTCATCAATTCTTTTCTATTAAGAAGGGAAAACGGTCTGATATACTCCTCAACTTTGTCAGTTAGAGATGATATATCCCTCGTTATGAAAGTGACTCATATATACCCTTATCGATATACAAACGACTCACATATACCCCTGCCGTTACAAAATGAGCTCACATATACCCTTCATTTAACGGAAGTTAAAAATTAGTTTTAAGTTTATATTTTTTACTTTTAATTTTTTTTAAAAATTATTTAGGGGTATATATGATTCTTGTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATGACTTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTCATTTTTTTTCTTTCATTCCTTAGTTTTAAAGAAAAAAATTAAAACTATTTTTTTGTCTATATTTTATTTGATTTTTGTATTCTAAGAAAAACTTTTGGTCATCTACAATAAGTTTTAAAGAATATTAGTGAAACATAAACAAATTTGATTATCAAAATAATAATTCTAAATTAGTAATTAAAACAAAAAAAAAGTAAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAAATTAGATTAAAATTATTATTTTTTTCATTTCCGTTTGAGGAGAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGGGTATATATGAGTCACTTTCTTTAACAAGGGGTATATCAGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTACAAATTTAGCCTCCAAAAAAAGAACTATACAGTTGCACAAATTGTCATTACGTCTAAAGATGAAAATAAAAAAATACACAGTTTAAAATTTGTTGTTTTGACAAACTATTTTTGTGGTAAAAATTAATAGAATTTCTGTCAAGTTTTTTTTACTGATTTGGAGCGGAAAAGAAGAAATATACACTAAATTGGAATAAATAACCATTGTACCTAAAGAAGAAACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATTGTTGATTCAGTTTCTTCATCCCTCCTTTTTAACTTCTTTTTCCCTTTGGGTTTTCCTACCTTTTGATTTGAAGACTTGGGGTTGGCTTGGGTGAGAGAGAGCCAAGAGGGAGGGACAGGGAGTCACCGACGTCTGAGTTGGCTAGCGTTGCAGCCAAAGGAAATTGTCTCATCCAGTAAGCTTGAATAGAACTTTCTAGTTCTGTTTTACCCTTACCCCTGTATGAATTGGGGCCTTTCAATTGATTGATTTCGCCATGCAGAGATACATGAGACAACCCTCTTTCTATTGTGGTCCTTTTTTTTCTTTTCTCAAGTGTATTTTGTTACTGGTTGAGTTTTCATTTCCACTATTCCGTAATTTGTATTTTGAATGCAAACTCAAGTATGCTCCGGTATCTGATATTTCTCTGCAATGTGATAGATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCA</genome_strand>
        <mrna_strand>CTTCATGAGATCTGTTCGTCTCTTTTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTTCGTAAAAAGGGCGAAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303063" ref_strand="+" ref_description="SGN-E303063 [cLEW-26-H21]">
      <seq>tgataggttctttatctcctaaacggggtagttttgaggaaggcaatggtgatgcagtacatgcagaagccatacgcagtgcattgaatgagatggcttcttccagtaagaataaattccgacggtctggctggacgtcatctgaggatgaaaccgatgtcatggaccaagatgatgcaggtttagtttgatcttcaagagcttaaaacccaaacatatattggttcatatttctaattcttattgaatgtctggtggagttcttcaggtctactattttcacatttgtttaatttgtcatatggtaaatatgcttcttgacattctttttgtgtcttttttcgtcaacaatcttcacttctctgacagtacgtgatcatattgataatcaaggagggaaaaaaaagcattatgctattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25736" stop="24713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25436" g_stop="25013" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E303063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25436" e_stop="25013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATT</genome_strand>
        <mrna_strand>TGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245967" ref_strand="+" ref_description="SGN-E245967 [cLEF-51-I18]">
      <seq>aacagataaaatataaagttggggtaacatatgtctggtatattaagaggtcagaggaaacacaatgaaacaaataagctattgcatatgattatgtagcattagcagttgggaagtacctcatttaaaagctgattttttaatttttcttcattctcacacgcctaaaaggctgtgtatccatgttcggtgccatgtcaacattctgggtgtgaaggctatcaaatcgtcaagttcggggtacatcattatgtgtcctatatgactagtcttgtgtccactgcatgagttggattcaaggcaactatgttgtgttttagttggtttatagtgtatcttcatagatccaccatatgaagttcctatgctgatgtggtacttgctcaacatggttatattgaagaactcatgaaggttccatgtaaagtagctaataggtaagctctatagtcctgctttttgatggactgatcattcatctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="26322" stop="25236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26022" g_stop="25536" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E245967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26022" e_stop="25536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTT</genome_strand>
        <mrna_strand>AACAGATAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTCAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548773" ref_strand="+" ref_description="SGN-E548773 [TUS-64-E14]">
      <seq>ctctaaatgacaaagttaaggggtatatcagacctttttcctattatgaattaaacttatttggatcatttggtagtacttctgtaaacatcctaaaagtttctttacatggtgcttatacgatttaaatgtttttgtgatgctactggtgcattttatatttctgtttaatttgattctctgaagtttcttacatggggccaaaccttctataatcttttggtggtggaatacaagagttaatacccttatgtttgggtatttgaagtcttagggtctgcttctaataatggcactgatgcttaatttattattatgtacgagaaaatttgattatccaaaagctccaaaaatttcttgaataattgatcttccaagtaagatttccgcgacttcatcagacacagacattctggtattttttcctttattagagtttaatgctcgatagtttatacagttcctatcctggcactaagagaattactgggcactataatggcattgcgtgattttatttctctttactcctctgtaattccagttcttttgcatttgcaagggtctcatttgatatgagttaagacatgatgtagttactctatctaattgaatttattaagcagatagggttttctctgtttcttgntcgacttgggccacatttatcagaaaacatgtttcgaactccatttttaggttaaaatattggatacaaatgatggagtttcacccatttcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27288" stop="25943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26988" g_stop="26243" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E548773" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26988" e_stop="26243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTA</genome_strand>
        <mrna_strand>CTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGNTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAAATATTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300961" ref_strand="+" ref_description="SGN-E300961 [cLEW-8-J11]">
      <seq>agctctaaatgacaaagttaaggggtatatcagacctttttcctattatgaattaaacttatttggatcatttggtagtacttctgtaaacatcctaaaagtttctttacatggtgcttatacgatttaaatgtttttgtgatgctactggtgcattttatatttctgtttaatttgattctctgaagtttcttacatggggccaaaccttctataatcttttggtggtggaatacaagagttaatacccttatgtttgggtatttgaagtcttagggtctgcttctaataatggcactgatgcttaatttattattatgtacgagaaaatttgattatccaaaagctccaaaaatttcttgaataattgatcttccaagtaagatttccgcgacttcatcagactcagacattctggtatttttttcctttattagagtttaatgctcgatagtttatacagttcctatcctggcactaagagaattactgggcactataatggcattgcgtgattttatttctctttactcctctgtaattccagttcttttgcatttgcaagggtctcatttgatatgagttaagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27290" stop="26099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26990" g_stop="26399" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E300961" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26990" e_stop="26399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTA-TTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATG</genome_strand>
        <mrna_strand>AGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACTCAGACATTCTGGTATTTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301395" ref_strand="+" ref_description="SGN-E301395 [cLEW-24-N16]">
      <seq>tctaaatgacaaagttaaagggtatatcagacctttttcctattatgaattaaacttatttggatcatttggtagtacttctgtaaacatcctaaaagtttctttacatggtgcttatacgatttaaatgtttttgtgatgctactggtgcattttatatttctgtttaatttgattctctgaagtttcttacatggggccaaaccttctataatcttttggtggtggaatacaagagttaatacccttatgtttgggtatttgaagtcttaaggtctgcttctaataatggcactgatgcttaatttattattatgtacgagaaaatttgattatccaaaagctccaaaaatttcttgaataattgatcttccaagtaagatttccgcgacttcatcagacacagacattctggtattttttcctttattagagtttaatgctcgatagtttatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27287" stop="26229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26987" g_stop="26529" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E301395" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26987" e_stop="26529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAG</genome_strand>
        <mrna_strand>TCTAAATGACAAAGTTAAAGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAAGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258448" ref_strand="+" ref_description="SGN-E258448 [cLEG-47-H23]">
      <seq>agaaaaggacgatgatggggaagttgtctcgaatactgttagtggaggacatcaagaaaaggaggatattggtaaagttatcttggctacagcaagtggagagcatcaagaggaggatgatgatggtaaagttatctcggctacagcaagtggagaacatcaagaaaaagaggatgatggtaaagttgtctcgaaaactgtaaatggagaaaatcaagacaagccatcactagacggagtggaaaagcatgaccagaaaacatttcaacggaaaagaaaaaagggtatgaacatgcctagcagagcatcaaaacggcttgctggtattaaagctgatacatctcttaagctccaaacaaatgatcaaacccagctaacttcagttagacagcaggaggggacacaagctgccacctccgataaccctttgaattttactaataccagtaagcatgttgcaagtacagtaactggtataaccatcaacaagaaggtagaaactgggaatctgaccattaaaaggaaacaacatcttgttacttcaccacaaacggagggagagaagaagccttctccagctgaacctgcaaaaactgtccttgctagctgtgatgtcgataagaaaggtgaaacagctcttgaatcatctttaagtgatctttggacggacccgtgcatagaatttgctataaaaactctaaccggtacnattccagtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32804" stop="31484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32504" g_stop="31784" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E258448" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32504" e_stop="31784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGACGATGATGGGGAAGTTGTCTCGAATACTGTTAGTGGAGGACATCAAGAAAAGGAGGATATTGGTAAAGTTATCTTGGCTACAGCAAGTGGAGAGCATCAAGAGGAGGATGATGATGGTAAAGTTATCTCGGCTACAGCAAGTGGAGAACATCAAGAAAAAGAGGATGATGGTAAAGTTGTCTCGAAAACTGTAAATGGAGAAAATCAAGACAAGCCATCACTAGACGGAGTGGAAAAGCATGACCAGAAAACATTTCAACGGAAAAGAAAAAAGGGTATGAACATGCCTAGCAGAGCATCAAAACGGCTTGCTGGTATTAAAGCTGATACATCTCTTAAGCTCCAAACAAATGATCAAACCCAGCTAACTTCAGTTAGACAGCAGGAGGGGACACAAGCTGCCACCTCCGATAACCCTTTGAATTTTACTAATACCAGTAAGCATGTTGCAAGTACAGTAACTGGTATAACCATCAACAAGAAGGTAGAAACTGGGAATCTGACCATTAAAAGGAAACAACATCTTGTTACTTCACCACAAACGGAGGGAGAGAAGAAGCCTTCTCCAGCTGAACCTGCAAAAACTGTCCTTGCTAGCTGTGATGTCGATAAGAAAGGTGAAACAGCTCTTGAATCATCTTTAAGTGATCTTTGGACGGACCCGTGCATAGAATTTGCTATAAAAACTCTAACCGGTACAATTCCAGTCATA</genome_strand>
        <mrna_strand>AGAAAAGGACGATGATGGGGAAGTTGTCTCGAATACTGTTAGTGGAGGACATCAAGAAAAGGAGGATATTGGTAAAGTTATCTTGGCTACAGCAAGTGGAGAGCATCAAGAGGAGGATGATGATGGTAAAGTTATCTCGGCTACAGCAAGTGGAGAACATCAAGAAAAAGAGGATGATGGTAAAGTTGTCTCGAAAACTGTAAATGGAGAAAATCAAGACAAGCCATCACTAGACGGAGTGGAAAAGCATGACCAGAAAACATTTCAACGGAAAAGAAAAAAGGGTATGAACATGCCTAGCAGAGCATCAAAACGGCTTGCTGGTATTAAAGCTGATACATCTCTTAAGCTCCAAACAAATGATCAAACCCAGCTAACTTCAGTTAGACAGCAGGAGGGGACACAAGCTGCCACCTCCGATAACCCTTTGAATTTTACTAATACCAGTAAGCATGTTGCAAGTACAGTAACTGGTATAACCATCAACAAGAAGGTAGAAACTGGGAATCTGACCATTAAAAGGAAACAACATCTTGTTACTTCACCACAAACGGAGGGAGAGAAGAAGCCTTCTCCAGCTGAACCTGCAAAAACTGTCCTTGCTAGCTGTGATGTCGATAAGAAAGGTGAAACAGCTCTTGAATCATCTTTAAGTGATCTTTGGACGGACCCGTGCATAGAATTTGCTATAAAAACTCTAACCGGTACNATTCCAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310416" ref_strand="+" ref_description="SGN-E310416 [cTOA-10-A14]">
      <seq>cataatcctcaaattttcttttcccattcaccacattggtattatggtgcacatcttaaagatgtatttaatctaagctttgatctctaacattgatgtgtatttatgttgattgattctggtgattttctattcgtttttggaagataaggtccctattgtgcttttggtgttttaagaataaggagatgcctgtgaacctaacattccattttgtttaaaatgtggagaaaacttaagattctttgaatagtgtgtggcacgaagtcagcgcagattcagagcctgctatcttataacccaacttgtagaattttccttgtgaggaccattttatctttgccaaaatggacaaactacatactgcaatctgtgcttttaatagaaaataccatgtttggaaattttgcttgaatgcgatgccattataaattctcttttccagaaaaagtgaagggaaaggatgagttttgtttattcattaagaaactgtgttgtcctataacggctctacccgtcatatccatgccaacctagttttcacaccaccacttgcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35517" stop="34357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35217" g_stop="34657" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E310416" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35217" e_stop="34657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCCTCAAATTTTCTTTTCCCATTCACCACATTGGTATTATGGTGCACATCTTAAAGATGTATTTAATCTAAGCTTTGATCTCTAACATTGATGTGTATTTATGTTGATTGATTCTGGTGATTTTCTATTCGTTTTTGGAAGATAAGGTCCCTATTGTGCTTTTGGTGTTTTAAGAATAAGGAGATGCCTGTGAACCTAACATTCCATTTTGTTTAAAATGTGGAGAAAACTTAAGATTCTTTGAATAGTGTGTGGCAGGAAGTCAGCGCAGATTCAGAGCCTGCTATCTTATAACCCAACTTGTAGAATTTTCCTTGTGAGGACCATTTTATCTTTGCCAAAATGGACAAACTACATACTGCAATCTGTGCTTTTAATAGAAAATACCATGTTTGGAAATTTTGCTTGAATGCGATGCCATTATAAATTCTCTTTTCCAGAAAAAGTGAAGGGAAAGGATGAGTTTTGTTTATTCATTAAGAAACTGTGTAGTCCTATAACGGCTCTACCCGTCATATCCATGCCAACCTAGTTTCCACACCACCACTTGCAGTTT</genome_strand>
        <mrna_strand>CATAATCCTCAAATTTTCTTTTCCCATTCACCACATTGGTATTATGGTGCACATCTTAAAGATGTATTTAATCTAAGCTTTGATCTCTAACATTGATGTGTATTTATGTTGATTGATTCTGGTGATTTTCTATTCGTTTTTGGAAGATAAGGTCCCTATTGTGCTTTTGGTGTTTTAAGAATAAGGAGATGCCTGTGAACCTAACATTCCATTTTGTTTAAAATGTGGAGAAAACTTAAGATTCTTTGAATAGTGTGTGGCACGAAGTCAGCGCAGATTCAGAGCCTGCTATCTTATAACCCAACTTGTAGAATTTTCCTTGTGAGGACCATTTTATCTTTGCCAAAATGGACAAACTACATACTGCAATCTGTGCTTTTAATAGAAAATACCATGTTTGGAAATTTTGCTTGAATGCGATGCCATTATAAATTCTCTTTTCCAGAAAAAGTGAAGGGAAAGGATGAGTTTTGTTTATTCATTAAGAAACTGTGTTGTCCTATAACGGCTCTACCCGTCATATCCATGCCAACCTAGTTTTCACACCACCACTTGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39862" stop="40755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40162" g_stop="40481" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40162" e_stop="40481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATAC-AAAA-AAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTTGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAATATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39862" stop="40755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40162" g_stop="40450" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40162" e_stop="40450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATAC-AAAA-AAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTTGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAATATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39863" stop="40907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40163" g_stop="40607" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40163" e_stop="40607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATAC-AAAA-AAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTTGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAATATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTCGGGAGAGAGACG-CTGGCAAATTTTAGCTAATATTTGCTATGGAGCACAATTAAATCAAATCATAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550230" ref_strand="+" ref_description="SGN-E550230 [TUS-5-O15](-)">
      <seq>ctggtatgatgtagcacgtactcaatgaaatagtcgaggtatgtggcttgaacagcagaggtatgtggcttgaacagcaccagtacaagagaggaaagaatcagtacttagtcaatctgaagtctaaatcaagtttcatttgattgatgtaaccactttgtctgtatctaccactatgaacgtggcctgatctttcataaatagactttagtacaaacacatacaaaacagcctgaataggcctgtcttctcttctaaacaactatcacaaacacttcagttttactcaaaatcatgaaacctcccacttcattacttcttctcctggttttgattttggttttggttcttgtagcattccgctacgccgattgcagacatttaactgcagcttatcagtctgtaaagctaagaggtagtaagaaatttgtttcagttcatgctggtgctgcagatcatcttgttcctggaggaccaaatcctcttcacaactgaacatatatctttttggtttcccacccaggctccgcctccatacccaagaagactcgaatctgattaaggatgaaagagtacttatcactataccataatcctcttgtcagtcaaacatatacttaattgtctttctttttacaatacatagaaattagaatattactgttctatttgcattgatgtactatacttgcccaattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44720" stop="43419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44420" g_stop="43719" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E550230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44420" e_stop="43719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAATCATGAAACCTCCCACTTCATTACTTCTTCTCCTGGTTTTGATTTTGGTTTTGGTTCTTGTAGCATTCCGCTACGCCGATTGCAGACATTTAACTGCAGCTTATCAGTCTGTAAAGCTAAGAGGTAGTAAGAAATTTGTTTCAGTTCATGCTGGTGCTGCAGATCATCTTGTTCCTGGAGGACCAAATCCTCTTCACAACTGAACATATATCTTTTTGGTTTCCCACCCAGGCTCCGCCTCCATACCCAAGAAGACTCGAATCTGATTAAGGATGAAAGAGTACTTATCACTATACCATAATCCTCTTGTCAGTCAAACATATACTTAATTGTCTTTCTTTTTACAATACATAGAAATTAGAATATTACTGTTCTATTTGCATTGATGTACTATACTTGCCCAATTATTA</genome_strand>
        <mrna_strand>CTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAATCATGAAACCTCCCACTTCATTACTTCTTCTCCTGGTTTTGATTTTGGTTTTGGTTCTTGTAGCATTCCGCTACGCCGATTGCAGACATTTAACTGCAGCTTATCAGTCTGTAAAGCTAAGAGGTAGTAAGAAATTTGTTTCAGTTCATGCTGGTGCTGCAGATCATCTTGTTCCTGGAGGACCAAATCCTCTTCACAACTGAACATATATCTTTTTGGTTTCCCACCCAGGCTCCGCCTCCATACCCAAGAAGACTCGAATCTGATTAAGGATGAAAGAGTACTTATCACTATACCATAATCCTCTTGTCAGTCAAACATATACTTAATTGTCTTTCTTTTTACAATACATAGAAATTAGAATATTACTGTTCTATTTGCATTGATGTACTATACTTGCCCAATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390065" ref_strand="+" ref_description="SGN-E390065 [TUS-4-O15](-)">
      <seq>acttgtactggtatgatgtagcacgtactcaatgaaatagtcgaggtatgtggctgnaacagcagaggtatgtggcttgaacagcaccagtacaagagaggaaagaatcagtacttagtcaatctgaagtctaaatcaagtttcatttgattgatgtaaccactttgtctgtatctaccactatgaacgtggcctgatctttcataaatagactttagtacaaacacatacaaaacagcctgaataggcctgtcttctcttctaaacaactatcacaaacacttcagttttactcaaaatcatgaaacctcccacttcattacttcttctcctggttttgattttggttttggttcttgtagcattccgctacgccgattgcagacatttaactgcagcttatcagtctgtaaagctaagaggtagtaagaaatttgtttcagttcatgctggtgctgcagatcatcttgttcctggaggaccaaatcctcttcacaactgaacatatatctttttggtttcccacccaggctccgcctccatacccaagaagactcgaatctgattaaggatgaaagagtacttatcactataccataatcctcttgtcagtcaaacatatacttaattgtctttctttttacaatacatagaaattagaatattactgttctattggaattgatgtactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44727" stop="43435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44427" g_stop="43735" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E390065" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44427" e_stop="43735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAATCATGAAACCTCCCACTTCATTACTTCTTCTCCTGGTTTTGATTTTGGTTTTGGTTCTTGTAGCATTCCGCTACGCCGATTGCAGACATTTAACTGCAGCTTATCAGTCTGTAAAGCTAAGAGGTAGTAAGAAATTTGTTTCAGTTCATGCTGGTGCTGCAGATCATCTTGTTCCTGGAGGACCAAATCCTCTTCACAACTGAACATATATCTTTTTGGTTTCCCACCCAGGCTCCGCCTCCATACCCAAGAAGACTCGAATCTGATTAAGGATGAAAGAGTACTTATCACTATACCATAATCCTCTTGTCAGTCAAACATATACTTAATTGTCTTTCTTTTTACAATACATAGAAATTAGAATATTACTGTTCTATTTGCATTGATGTACTAT</genome_strand>
        <mrna_strand>ACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTGNAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAATCATGAAACCTCCCACTTCATTACTTCTTCTCCTGGTTTTGATTTTGGTTTTGGTTCTTGTAGCATTCCGCTACGCCGATTGCAGACATTTAACTGCAGCTTATCAGTCTGTAAAGCTAAGAGGTAGTAAGAAATTTGTTTCAGTTCATGCTGGTGCTGCAGATCATCTTGTTCCTGGAGGACCAAATCCTCTTCACAACTGAACATATATCTTTTTGGTTTCCCACCCAGGCTCCGCCTCCATACCCAAGAAGACTCGAATCTGATTAAGGATGAAAGAGTACTTATCACTATACCATAATCCTCTTGTCAGTCAAACATATACTTAATTGTCTTTCTTTTTACAATACATAGAAATTAGAATATTACTGTTCTATTGGAATTGATGTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549985" ref_strand="+" ref_description="SGN-E549985 [TUS-5-O15]">
      <seq>ttgagatgtggttgttagcctcgctaccttcataaggtaagagcaagactacgtatacaccacttcctccagactctactcgtggaattactgtgttgttagcagcttttaccttttatgtgggatgtctgtaaaggagtagtgcatattccctatggcctgcagaagtgctagcacggttagtttctgtttgcttgtgcttgaaccacatttcctatgtataagtaaaaactccaagacaatattcctgttttaactctcttcatcttcgaatagcccacctcatcatataattggcttcgtgtttcacttatctgggctagcagtcaatgaagtcggttactaatttcaacaaagacaaaatacggaaggtgatttctttcaatctgttttaaaccttaataacagagttacctaatacttgtactggtatgatgtagcacgtactcaatgaaatagtcgaggtatgtggcttgaacagcagaggtatgtggcttgaacagcaccagtacaagagaggaaagaatcagtacttagtcaatctgaagtctaaatcaagtttcatttgattgatgtaaccactttgtctgtatctaccactatgaacgtggcctgatctttcataaatagactttagtacnaacacatacaaaacagcctgaataggcctgtcttctcttctaaacnactatcacaaacacttcagttttactcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45146" stop="43828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44846" g_stop="44128" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E549985" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44846" e_stop="44128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAAT</genome_strand>
        <mrna_strand>TTGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACNAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACNACTATCACAAACACTTCAGTTTTACTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389942" ref_strand="+" ref_description="SGN-E389942 [TUS-4-O15]">
      <seq>tcgccgagttgagatgtggttgttagcctcgctaccttcataaggtaagagcaagactacgtatacaccacttcctccagactctactcgtggaattactgtgttgttagcagcttttaccttttatgtgggatgtctgtaaaggagtagtgcatattccctatggcctgcagaagtgctagcacggttagtttctgtttgcttgtgcttgaaccacatttcctatgtataagtaaaaactccaagacaatattcctgttttaactctcttcatcttcgaatagcccacctcatcatataattggcttcgtgtttcacttatctgggctagcagtcaatgaagtcggttactaatttcaacaaagacaaaatacggaaggtgatttctttcaatctgttttaaaccttaataacagagttacctaatacttgtactggtatgatgtagcacgtactcaatgaaatagtcgaggtatgtggcttgaacagcagaggtatgtggcttgaacagcaccagtacaagagaggaaagaatcagtacttagtcaatctgaagtctaaatcaagtttcatttgattgatgtaaccactttgtctgtatctaccactatgaacgtggcctgatctttcnataatagactttagtacaaacacatacaaaacagcctgaataggcctgtcttctcttcntaaacactatcacaaacacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45150" stop="43842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44854" g_stop="44142" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E389942" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44854" e_stop="44142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCCAATTGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCA</genome_strand>
        <mrna_strand>TCGCCGAGTTGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCNATAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCNTAAACACTATCACAAACACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228337" ref_strand="+" ref_description="SGN-E228337 [cLED-3-K1]">
      <seq>tgagatgtggttgttagcctcgctaccttcataaggtaagagcaagactacgtatacaccacttcctccagactctactcgtggaattactgtgttgttagcagcttttaccttttatgtgggatgtctgtaaaggagtagtgcatattccctatggcctgcagaagtgctagcacggttagtttctgtttgcttgtgcttgaaccacatttcctatgtataagtaaaaactccaagacaatattcctgttttaactctcttcatcttcgaatagcccacctcatcatataattggcttcgtgtttcacttatctgggctagcagtcaatgaagtcggttactaatttcaacaaagacaaaatacggaaggtgatttctttcaatctgttttaaaccttaataacagagttacctaatacttgtactggtatgatgtagcacgtactcaatgaaatagtcgaggtatgtggcttgaacagcagaggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45145" stop="44056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44845" g_stop="44356" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E228337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44845" e_stop="44356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATG</genome_strand>
        <mrna_strand>TGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735166" ref_strand="+" ref_description="SGN-E735166 [LB14CE01]">
      <seq>gtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47623" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47323" g_stop="47296" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="650" r_length="622" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44898" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="663" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E735166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47323" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGGAAAT</genome_strand>
        <mrna_strand>GTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706711" ref_strand="+" ref_description="SGN-E706711 [FA30CH05]">
      <seq>tttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttangtattcgagntactctatctaattttgtctatgaaataatgaaacagcccttttatcccctgcatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47957" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47657" g_stop="47296" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45008" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="978" r_length="616" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45007" i_stop="44911" i_length="97">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44899" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="990" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E706711" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>990</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47657" e_stop="47296"/>
          <exon e_start="45623" e_stop="45008"/>
          <exon e_start="44910" e_stop="44899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGGAAA</genome_strand>
        <mrna_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTANGTATTCGAGNTACTCTATCTAATTTTGTCTATGAAATAATGAAACAGCCCTTTTATCCCCTGCATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTA.................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353458" ref_strand="+" ref_description="SGN-E353458 [cTOS-15-A19]">
      <seq>gatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45712" stop="44719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45412" g_stop="45020" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45019" i_stop="44911" i_length="109">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44910" g_stop="44899" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="405" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E353458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45412" e_stop="45020"/>
          <exon e_start="44910" e_stop="44899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGGAAA</genome_strand>
        <mrna_strand>GATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCT.............................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690161" ref_strand="+" ref_description="SGN-E690161 [LH_Ea02M15]">
      <seq>cgcttcgtgccgaattcggcacgagggtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacagaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaatgttaattctagagtatagactccttaggtattcgagttactctatctaattttgtgtatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45927" stop="44728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="630" r_length="590" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45032" i_stop="44911" i_length="122">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44910" g_stop="44900" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="641" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E690161" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45623" e_stop="45033"/>
          <exon e_start="44910" e_stop="44900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGGAA</genome_strand>
        <mrna_strand>AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAGAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAA-TGTTAATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTGTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA..........................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297858" ref_strand="+" ref_description="SGN-E297858 [cLET-38-L8]">
      <seq>gaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45882" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45582" g_stop="45009" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45008" i_stop="44911" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44910" g_stop="44900" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="585" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E297858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45582" e_stop="45009"/>
          <exon e_start="44910" e_stop="44900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGGAA</genome_strand>
        <mrna_strand>GAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTT..................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350064" ref_strand="+" ref_description="SGN-E350064 [cTOS-4-J19]">
      <seq>ccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45789" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45489" g_stop="45002" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44910" g_stop="44902" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="497" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E350064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45489" e_stop="45002"/>
          <exon e_start="44910" e_stop="44902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAGG</genome_strand>
        <mrna_strand>CCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700234" ref_strand="+" ref_description="SGN-E700234 [FA12CC01]">
      <seq>gtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgccatggcagggattgatagagctcatacttgattactatcagtaaagttacctatgtctgtttaatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47954" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47654" g_stop="47296" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="979" r_length="620" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44903" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="987" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E700234" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>989</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47654" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAG</genome_strand>
        <mrna_strand>GTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCCATGGCAGGGATTGATAGAGCTCATACTTGATTA-CTATCAGTAAAG-TTACCTATGTCTGTTTAATCTCAA...........................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390850" ref_strand="+" ref_description="SGN-E390850 [TUS-47-E6](-)">
      <seq>ctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagatcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45816" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45516" g_stop="45002" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44910" g_stop="44903" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="523" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E390850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45516" e_stop="45002"/>
          <exon e_start="44910" e_stop="44903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAAG</genome_strand>
        <mrna_strand>CTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGATCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701663" ref_strand="+" ref_description="SGN-E701663 [FA16CD09]">
      <seq>atctcgtccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaatatgaaacaagctttttatccctgcaatggcaggtattgatagagctcatacttgaatacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47950" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47650" g_stop="47296" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="976" r_length="621" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44904" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="983" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E701663" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47650" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAA</genome_strand>
        <mrna_strand>ATCTCGTCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATATGAAACAAG-CTTTTTATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGAATACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555504" ref_strand="-" ref_description="SGN-E555504 [cTSC-4-H8]">
      <seq>gtagtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgttgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacttggctttgtgaagatatgtgtatttatctcgtcccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctaggtctgttttatctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47795" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47495" g_stop="47296" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="822" r_length="622" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44904" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="829" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E555504" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47495" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAA</genome_strand>
        <mrna_strand>GTAGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGTTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACTTGGCTTTGTGAAGATATGTGTATTTATCTCGTCCCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTAGGTCTGTTTTATCTCAA...........................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372313" ref_strand="+" ref_description="SGN-E372313 [TUS-30-F1](-)">
      <seq>aagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47675" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47375" g_stop="47296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="702" r_length="622" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44904" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="709" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E372313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47375" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAA</genome_strand>
        <mrna_strand>AAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554185" ref_strand="-" ref_description="SGN-E554185 [cTSC-3-H8]">
      <seq>gattcaaagaagcctttgttgatggcaattaagggtcagatttatgaatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47657" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47357" g_stop="47296" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45002" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="685" r_length="622" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44910" g_stop="44904" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="692" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E554185" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47357" e_stop="47296"/>
          <exon e_start="45623" e_stop="45002"/>
          <exon e_start="44910" e_stop="44904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATG-ATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCATCTCTTCTTTTGGTAGCCATAACTAAAACCCTCTACACCCCTTCCCTTTCTTATCTTTTTGAAGCATTCCCTTCATTTGGCTGTAGGAACAAA</genome_strand>
        <mrna_strand>GATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATTTATGAATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA...........................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578311" ref_strand="-" ref_description="SGN-E578311 [LE12CB09]">
      <seq>tgaagcagtatgatgggtcggattcaagaaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47677" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47377" g_stop="47296" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="44997" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="709" r_length="627" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E578311" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47377" e_stop="47296"/>
          <exon e_start="45623" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCA</genome_strand>
        <mrna_strand>TGAAGCAGTATGATGGGTCGGATTCAAGAAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282833" ref_strand="+" ref_description="SGN-E282833 [cLER-15-M22]">
      <seq>tttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45847" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45547" g_stop="44999" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E282833" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45547" e_stop="44999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTG</genome_strand>
        <mrna_strand>TTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283094" ref_strand="-" ref_description="SGN-E283094 [cLER-17-C21]">
      <seq>agtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttatctcaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45725" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45425" g_stop="45002" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E283094" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283094" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45425" e_stop="45002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA</genome_strand>
        <mrna_strand>AGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277314" ref_strand="-" ref_description="SGN-E277314 [cLEL-3-L22]">
      <seq>ctaattggcacttccgtagaacagttctattggagatacaaaaacatggctttgtcaaaatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgaagacctatcagtaaagtttaaatacgcatgttttatctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45551" stop="44702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45251" g_stop="45002" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="267"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E277314" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277314" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45251" e_stop="45002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTGGCACTT-CGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA</genome_strand>
        <mrna_strand>CTAATTGGCACTTCCGTAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTCAAAATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGAAGACCTATCAGTAAAGTTTAAATACGCATGTTTTATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702648" ref_strand="+" ref_description="SGN-E702648 [FA19BC04]">
      <seq>aggaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatnacaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttangtattcgagntactctatctaattttgtctatgaaataatgaaacagcctttttaatccctgcatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47969" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47672" g_stop="47296" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45003" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="998" r_length="621" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E702648" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>998</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47672" e_stop="47296"/>
          <exon e_start="45623" e_stop="45003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTT-AATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCA</genome_strand>
        <mrna_strand>AGGAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATNACAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTANGTATTCGAGNTACTCTATCTAATTTTGTCTATGAAATAATGAAACAGCCTTTTTAATCCCTGC-ATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225874" ref_strand="+" ref_description="SGN-E225874 [cLEL-17-M16](-)">
      <seq>agtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45719" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45419" g_stop="45009" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="429"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E225874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45419" e_stop="45009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTT</genome_strand>
        <mrna_strand>AGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225471" ref_strand="+" ref_description="SGN-E225471 [cLEL-17-M16](-)">
      <seq>aggactaatttggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaaaatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaaatttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttacctatgtctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45555" stop="44708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45255" g_stop="45009" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="266"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E225471" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45255" e_stop="45009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTAA-TTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTT</genome_strand>
        <mrna_strand>AGGACTAATTTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAAATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAAATTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353043" ref_strand="+" ref_description="SGN-E353043 [cTOS-14-D23]">
      <seq>gaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagcctttttatccctgcaatggcaggtattgatagagctcatacttgattacctatcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47676" stop="44730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47376" g_stop="47296" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45030" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="675" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E353043" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47376" e_stop="47296"/>
          <exon e_start="45623" e_stop="45030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTA</genome_strand>
        <mrna_strand>GAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTTATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738418" ref_strand="+" ref_description="SGN-E738418 [LC13CD03]">
      <seq>cagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaagtattcgagttactctatctaattttgtctatgaaataatgaacaagcctttaatccctgcaatggcaagtattgatagagctcatacttgattacctatcagtaaagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47968" stop="44723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47669" g_stop="47296" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="964" r_length="590" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="974" polyA_stop="983"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E738418" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>965</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47669" e_stop="47296"/>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</genome_strand>
        <mrna_strand>CAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAAGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCC-TTTAATCCCTGCAATGGCAAGTATTGATAGAGCTCATACTTGATTACCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738258" ref_strand="+" ref_description="SGN-E738258 [LC13AA05]">
      <seq>cgatacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatcaaattttgtctatgaaataatgaacaacccttttaatccctgcaatggcaggtattgatagagctcatacttgatttacctatcagtaaagtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47967" stop="44723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47668" g_stop="47296" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="965" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="975" polyA_stop="985"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E738258" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47668" e_stop="47296"/>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGA-TTACCTATCA</genome_strand>
        <mrna_strand>CGATACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCAAATTTTGTCTATGAAATAATGAACAACCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTTACCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693175" ref_strand="+" ref_description="SGN-E693175 [LH_Ea10K05]">
      <seq>ccggttgctttctactatgttgtatcagagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccgccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtctgattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacagaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaatgttaattctagagtatagactccttaggtatccgagttactctatctaattttgtgtatgaaataatgaacaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatcagtaaagtttgtctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47812" stop="44720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47513" g_stop="47296" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="808" r_length="590" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E693175" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47513" e_stop="47296"/>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</genome_strand>
        <mrna_strand>CCGGTTGCTTTCTACTATGTTGTATCAGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCGCCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCTGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAGAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAA-TGTTAATTCTAGAGTATAGACTCCTTAGGTATCCGAGTTACTCTATCTAATTTTGTGTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695614" ref_strand="+" ref_description="SGN-E695614 [LH_Ea06P20](-)">
      <seq>gaggaacagaagcctctgccgccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtctgattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacagaaacatggctttgtgaagatatgtgtatttatctcgtcccagatgaatgttaattctagagtatagactccttaggtattcgagttactctatctaattttgtgtatgaaataatgaacaagccttttaatccctgcaatggcaggtagtgatagagctcatacttgattacctatcagtaaagaaagtgggcaagtggtagtaattcaccctttatctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47735" stop="44727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47435" g_stop="47296" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="730" r_length="590" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E695614" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47435" e_stop="47296"/>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</genome_strand>
        <mrna_strand>GAGGAACAGAAGCCTCTGCCGCCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCTGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAGAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTCCCAGATGAA-TGTTAATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTGTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTAGTGATAGAGCTCATACTTGATTACCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693394" ref_strand="+" ref_description="SGN-E693394 [LH_Ea01D08](-)">
      <seq>cagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtctgattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggcccccctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacagaaacatggctttgtgaagacacctgtatttatctcgtaccagatgaatgttaattctagagtatagactccttaggtattcgagttactctatctaattttgtgtatgaaataatgaacaagccttttatacggtgcaatggcaggtattgatagagctcatacttcttaacggtcagtaaagtttgtctgcaagggtagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47710" stop="44739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47410" g_stop="47296" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="704" r_length="589" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="745"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E693394" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47410" e_stop="47296"/>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</genome_strand>
        <mrna_strand>CAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCTGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGCCCCCCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAGAAACATGGCTTTGTGAAGACACCTGTATTTATCTCGTACCAGATGAA-TGTTAATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTGTATGAAATAATGAACAAGCCTTTTATACGGTGCAATGGCAGGTATTGATAGAGCTCATACTT-CTTAACGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694001" ref_strand="+" ref_description="SGN-E694001 [LH_Ea02M15](-)">
      <seq>cctcgtgccgaattcggcacgagggtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacagaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaatgttaattctagagtatagactccttaggtattcgagttactctatctaattttgtgtatgaaataatgaacaagccttttaatccctgcaatggcaagtagggatagagctcatacttgattacctatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45927" stop="44728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45623" g_stop="45033" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="628" r_length="590" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="642"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E694001" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45623" e_stop="45033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA</genome_strand>
        <mrna_strand>AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAGAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAA-TGTTAATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTGTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAAGTAGGGATAGAGCTCATACTTGATTACCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702627" ref_strand="+" ref_description="SGN-E702627 [FA19BA05]">
      <seq>aggaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgancaagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47969" stop="44734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47672" g_stop="47296" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45034" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="967" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E702627" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47672" e_stop="47296"/>
          <exon e_start="45623" e_stop="45034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATC</genome_strand>
        <mrna_strand>AGGAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGANCAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703491" ref_strand="+" ref_description="SGN-E703491 [FA21CF04]">
      <seq>atcaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcngagtactctatctaattttgtctatgaaataatgaacaagcctttttatccctgcaatggcaggtattgatagagctcatacttgattacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47972" stop="44735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47672" g_stop="47296" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45035" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="966" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E703491" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47672" e_stop="47296"/>
          <exon e_start="45623" e_stop="45035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTC-GAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTAT</genome_strand>
        <mrna_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCNGAG-TACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTTATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701827" ref_strand="+" ref_description="SGN-E701827 [FA17AC02]">
      <seq>cttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaaagtgtgattctagagtatagactccttaggtatttcgagtactctatctaattttgtctatgaaaatatgaaacagccttttaatccctgcaatggcaggtattgatagagctcatacttgattacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47963" stop="44735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47663" g_stop="47296" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45035" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="957" r_length="589" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E701827" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>957</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47663" e_stop="47296"/>
          <exon e_start="45623" e_stop="45035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATG-AAGTGTTGATTCTAGAGTATAGACTCCTTAGGTA-TTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTAT</genome_strand>
        <mrna_strand>CTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAAGTG-TGATTCTAGAGTATAGACTCCTTAGGTATTTCGAG-TACTCTATCTAATTTTGTCTATGAAAATATGAAACAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737780" ref_strand="+" ref_description="SGN-E737780 [LC11AG12]">
      <seq>agaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaaagtgtgaatctagagtatagactccttaggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47968" stop="44831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47668" g_stop="47296" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45136" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="861" r_length="488" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45135" i_stop="45066" i_length="70">
            <donor d_prob="0.611" d_score="0.90"/>
            <acceptor a_prob="0.896" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45065" g_stop="45061" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="862" r_stop="866" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E737780" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47668" e_stop="47296"/>
          <exon e_start="45623" e_stop="45136"/>
          <exon e_start="45065" e_stop="45061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATT</genome_strand>
        <mrna_strand>AGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAAGTGTGAATCTAGAGTATAGACTCCTTAG......................................................................GTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712192" ref_strand="+" ref_description="SGN-E712192 [FB04AF10]">
      <seq>gatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccttttaatccctgcaatggcaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47741" stop="44763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47441" g_stop="47296" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45066" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="704" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="720"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E712192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47441" e_stop="47296"/>
          <exon e_start="45623" e_stop="45066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAG</genome_strand>
        <mrna_strand>GATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737918" ref_strand="+" ref_description="SGN-E737918 [LC11CG12]">
      <seq>agaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttaggtattcgagttactctatctaattttgtctatgaaataatgaacaagccnttttaatccctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47968" stop="44771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47668" g_stop="47296" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45071" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="927" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E737918" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47668" e_stop="47296"/>
          <exon e_start="45623" e_stop="45071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCC-TTTTAATCCCTGCAAT</genome_strand>
        <mrna_strand>AGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCNTTTTAATCCCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698169" ref_strand="+" ref_description="SGN-E698169 [FA05BH08]">
      <seq>cggtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgattctagagtatagactccttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47954" stop="44835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47656" g_stop="47296" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45136" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="849" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E698169" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47656" e_stop="47296"/>
          <exon e_start="45623" e_stop="45136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAG</genome_strand>
        <mrna_strand>CGGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733944" ref_strand="+" ref_description="SGN-E733944 [LB11BE02]">
      <seq>gaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggcgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttcggagaaaagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttatctcgtaccagatgaagtgttgaattctagagtatagactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47885" stop="44840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47585" g_stop="47296" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45140" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="775" r_length="485" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E733944" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47585" e_stop="47296"/>
          <exon e_start="45623" e_stop="45140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTG-ATTCTAGAGTATAGACTCC</genome_strand>
        <mrna_strand>GAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGCGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAAAAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGAATTCTAGAGTATAGACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705843" ref_strand="+" ref_description="SGN-E705843 [FA28BB12]">
      <seq>cttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggactaattggcacttccgagaacagttctattggagatacaaaaacatggctttgtgaagatatgtgtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47963" stop="44880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47663" g_stop="47296" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45180" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="812" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E705843" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47663" e_stop="47296"/>
          <exon e_start="45623" e_stop="45180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTAT</genome_strand>
        <mrna_strand>CTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCCGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691774" ref_strand="+" ref_description="SGN-E691774 [LH_Ea06P20]">
      <seq>ctgttagaagtaaaagatttcaacttcttcttcttcttcaatcatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcacttgctttctactatgttgtatcagagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccgccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtctgattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaaccgtggacaagtctgacggtgatgttgacaagaaagactaattggcacttccgagaacagttctattggagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47924" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47616" g_stop="47296" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="351" r_length="321" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45213" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="762" r_length="411" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E691774" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47616" e_stop="47296"/>
          <exon e_start="45623" e_stop="45213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACA</genome_strand>
        <mrna_strand>TTCTTCTTCAATCATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCACTTGCTTTCTACTATGTTGTATCAGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCGCCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCTGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAACCGTGGACAAGTCTGACGGTGATGTTGACAAGAAAGACTAATTGGCACTTCCGAGAACAGTTCTATTGGAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699675" ref_strand="+" ref_description="SGN-E699675 [FA10DE09]">
      <seq>cgattaaaaaagatttcaacttcttcttcaattatggctgtacaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgacaagaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47929" stop="44950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47635" g_stop="47296" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45250" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="715" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E699675" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47635" e_stop="47296"/>
          <exon e_start="45623" e_stop="45250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAA-AGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACT</genome_strand>
        <mrna_strand>CGATTAAAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTACAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286403" ref_strand="+" ref_description="SGN-E286403 [cLES-11-B12]">
      <seq>tcggatacaacatagtagaaagcaagcgctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgcttgaatcgtggacaagtctgacggtgatgttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47755" stop="44958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47450" g_stop="47296" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="179" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45258" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="545" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E286403" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47450" e_stop="47296"/>
          <exon e_start="45623" e_stop="45258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAA</genome_strand>
        <mrna_strand>AGCGCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTTGAATCGTGGACAAGTCTGACGGTGATGTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721668" ref_strand="+" ref_description="SGN-E721668 [FC14DC10]">
      <seq>agggcgattggcggccaatcggccgaattgatcaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcaaaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47972" stop="44960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47672" g_stop="47296" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="407" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45260" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="771" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E721668" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47672" e_stop="47296"/>
          <exon e_start="45623" e_stop="45260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGAC</genome_strand>
        <mrna_strand>ATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699324" ref_strand="+" ref_description="SGN-E699324 [FA09CF01]">
      <seq>cccattagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaacccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtctgacggtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47930" stop="44964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47632" g_stop="47296" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45264" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="698" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E699324" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47632" e_stop="47296"/>
          <exon e_start="45623" e_stop="45264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAA-CCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGT</genome_strand>
        <mrna_strand>CCCATTAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372314" ref_strand="+" ref_description="SGN-E372314 [TUS-30-F1]">
      <seq>agaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagatggcccatctggaagcagtgtcgctgaaatcgtggacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47935" stop="44976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47635" g_stop="47296" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45276" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="688" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E372314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47635" e_stop="47296"/>
          <exon e_start="45623" e_stop="45276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTC</genome_strand>
        <mrna_strand>AGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348239" ref_strand="+" ref_description="SGN-E348239 [cTOF-27-C8]">
      <seq>gaagcaaaagatttcaacttcttcttaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcngaagatggcccatctggaagcagtgtcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47934" stop="44992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47634" g_stop="47296" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45292" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="670" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E348239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47634" e_stop="47296"/>
          <exon e_start="45623" e_stop="45292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTG</genome_strand>
        <mrna_strand>GAAGCAAAAGATTTCAACTTCTTCTT-AATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCNGAAGATGGCCCATCTGGAAGCAGTGTCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307180" ref_strand="+" ref_description="SGN-E307180 [cLEY-15-M6]">
      <seq>aactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatcttgtgaatcaaccgatcctgaaaccaagccagcagaagctgttgcatcagagagcgctaagccatcggaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47893" stop="45017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47593" g_stop="47296" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45317" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="605" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E307180" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47593" e_stop="47296"/>
          <exon e_start="45623" e_stop="45317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGAT</genome_strand>
        <mrna_strand>AACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTTGTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327958" ref_strand="+" ref_description="SGN-E327958 [cTOC-22-D8]">
      <seq>tttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatccctgaaacaagccagcagaagctgttgcatcagagagcgctaagccatcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47953" stop="45021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47653" g_stop="47296" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45321" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="661" r_length="303" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E327958" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47653" e_stop="47296"/>
          <exon e_start="45623" e_stop="45321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGA</genome_strand>
        <mrna_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCCTGAAACAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327957" ref_strand="+" ref_description="SGN-E327957 [cTOC-22-B20]">
      <seq>tttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaacaagccagcagaagctgttgcatcagagagcgctaagccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47953" stop="45023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47653" g_stop="47296" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45323" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="658" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E327957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47653" e_stop="47296"/>
          <exon e_start="45623" e_stop="45323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCG</genome_strand>
        <mrna_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAA-CAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396276" ref_strand="+" ref_description="SGN-E396276 [TUS-47-E6]">
      <seq>agatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaaccaagccagcaaaagctgttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47926" stop="45042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47626" g_stop="47296" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45342" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="613" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E396276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47626" e_stop="47296"/>
          <exon e_start="45623" e_stop="45342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATC</genome_strand>
        <mrna_strand>AGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAAAAGCTGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689554" ref_strand="+" ref_description="SGN-E689554 [LH_Ea01D08]">
      <seq>cctttatatgtttgtctcgcccaacagtagaactaaaagattccttcttcttcttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcacttgctttctactatgttgtatcagagttgtttggttcacctgataatcgtcatcaacagaggcctagacatttcgaggaacagaagcctctgccgccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtctgattcaaagaagcctttgttgatggcaattaagggtcagatctatgatggggcgcagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggaccgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgcatcctgaaaccaagcccagcagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47963" stop="45050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47616" g_stop="47296" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="374" r_length="321" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45350" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="650" r_length="276" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E689554" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47616" e_stop="47296"/>
          <exon e_start="45623" e_stop="45350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCG-ATCCTGAAACCAAG-CCAGCAGAAGCT</genome_strand>
        <mrna_strand>TTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCACTTGCTTTCTACTATGTTGTATCAGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGACATTTCGAGGAACAGAAGCCTCTGCCGCCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCTGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGGGGCGCAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACCGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGCATCCTGAAACCAAGCCCAGCAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305698" ref_strand="+" ref_description="SGN-E305698 [cLEX-14-A11]">
      <seq>gaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47967" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47667" g_stop="47296" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45366" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="630" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E305698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47667" e_stop="47296"/>
          <exon e_start="45623" e_stop="45366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAAC</genome_strand>
        <mrna_strand>GAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330497" ref_strand="+" ref_description="SGN-E330497 [cTOD-4-J6]">
      <seq>tttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttgaatcaaccgatcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47953" stop="45068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47653" g_stop="47296" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45368" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="614" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E330497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47653" e_stop="47296"/>
          <exon e_start="45623" e_stop="45368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAA</genome_strand>
        <mrna_strand>TTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699421" ref_strand="+" ref_description="SGN-E699421 [FA10AA05]">
      <seq>cccctttacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcacacagtgccagtaagtgatggcgcagctaatgatgaatctgttgaatcaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47964" stop="45076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47671" g_stop="47296" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45376" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="624" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E699421" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47671" e_stop="47296"/>
          <exon e_start="45623" e_stop="45376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCG</genome_strand>
        <mrna_strand>CCCCTTTACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCACACAGTGCCAGTAAGTGATGGCGCAGCTAATGATGAATCTGTTGAATCAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305443" ref_strand="+" ref_description="SGN-E305443 [cLEX-15-B13]">
      <seq>tttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcagacagtgccagtaagtgatggtgcagctaatgatgaatctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47957" stop="45084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47657" g_stop="47296" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45384" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="602" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E305443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47657" e_stop="47296"/>
          <exon e_start="45623" e_stop="45384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGA</genome_strand>
        <mrna_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285187" ref_strand="+" ref_description="SGN-E285187 [cLER-20-F3]">
      <seq>gatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtcaagcaaacagtgccagtaagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47925" stop="45110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47625" g_stop="47296" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45410" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="544" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E285187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47625" e_stop="47296"/>
          <exon e_start="45623" e_stop="45410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGAT</genome_strand>
        <mrna_strand>GATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAAACAGTGCCAGTAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310659" ref_strand="+" ref_description="SGN-E310659 [cLEZ-19-H4]">
      <seq>acaaaacctgataattcacaaatcaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47993" stop="45134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47693" g_stop="47296" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45434" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="588" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E310659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47693" e_stop="47296"/>
          <exon e_start="45623" e_stop="45434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTC</genome_strand>
        <mrna_strand>ACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318815" ref_strand="+" ref_description="SGN-E318815 [cTOB-11-N5]">
      <seq>tttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataaattcatgagcaagtatgtcaaggttgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47957" stop="45137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47657" g_stop="47296" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45437" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="549" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E318815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47657" e_stop="47296"/>
          <exon e_start="45623" e_stop="45437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACT</genome_strand>
        <mrna_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203063" ref_strand="+" ref_description="SGN-E203063 [cLEB-3-O18]">
      <seq>gcacgagctagctccgactactttttttattcttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagattttgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagcttgaggccttgcaagattgggagtataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47856" stop="45168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47557" g_stop="47296" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45468" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="417" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E203063" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47557" e_stop="47296"/>
          <exon e_start="45623" e_stop="45468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAA</genome_strand>
        <mrna_strand>GCAC-GAGCTAGCTCCGACTACTTTTTTTATTCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTTGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322950" ref_strand="+" ref_description="SGN-E322950 [cTOB-30-M8]">
      <seq>cccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgaggagaaagatctcactggtgatatctctggccttggtccatttgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47944" stop="45194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47644" g_stop="47296" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45494" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="479" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E322950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47644" e_stop="47296"/>
          <exon e_start="45623" e_stop="45494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTT</genome_strand>
        <mrna_strand>CCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277200" ref_strand="-" ref_description="SGN-E277200 [cLEL-3-L22](-)">
      <seq>acgagctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttgtgtcacctgataatcgtcatcaacccagcgcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccaagatgtcctttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47855" stop="45241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47555" g_stop="47296" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45541" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="343" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E277200" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277200" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47555" e_stop="47296"/>
          <exon e_start="45623" e_stop="45541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAG-GCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGG</genome_strand>
        <mrna_strand>AC-GAGCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGTGTCACCTGATAATCGTCATCAACCCAGCGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334636" ref_strand="+" ref_description="SGN-E334636 [cTOD-23-O2]">
      <seq>tcaactagtcctcgcacagcacaataaaattatgagtaaataaagaaacaaaacctgataattcacaaatcaagaaacttctctttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgctagtagagctcttgccnagatgtccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="48040" stop="45245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47740" g_stop="47296" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45545" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="524" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E334636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47740" e_stop="47296"/>
          <exon e_start="45623" e_stop="45545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTT</genome_strand>
        <mrna_strand>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCNAGATGTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209581" ref_strand="+" ref_description="SGN-E209581 [cLEC-54-G5]">
      <seq>tttgtttatctcgcccaacagtagaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggnaaggatgctagtagagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47957" stop="45262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47657" g_stop="47296" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45562" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="424" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E209581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47657" e_stop="47296"/>
          <exon e_start="45623" e_stop="45562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTC</genome_strand>
        <mrna_strand>TTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGNAAGGATGCTAGTAGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283224" ref_strand="+" ref_description="SGN-E283224 [cLER-17-H24]">
      <seq>agaagcaaaagatttcaacttcttcttcaattatggctgtagaactatgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctagagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaagcagtatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctggaaaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47935" stop="45273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47635" g_stop="47296" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45573" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="391" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E283224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47635" e_stop="47296"/>
          <exon e_start="45623" e_stop="45573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGC</genome_strand>
        <mrna_strand>AGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710928" ref_strand="+" ref_description="SGN-E710928 [FA57BF12]">
      <seq>atgggaaacattgaaagattctattacagcttacactggtctagctccgactactttttttacccttgttgctctagcgcttgctttctactatgttgtatccgagttgtttggttcacctgataatcgtcatcaacagaggcctacagatttcgaggaacagaagcctctgccaccaccagttcaacttggagagatttctggagaggagttgaaccagcatgatgggtcggattcaaagaagcctttgttgatggcaattaagggtcagatctatgatgtttcacagagcagaatgttttatggacctggaggaccttatgcattatttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47889" stop="45282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47589" g_stop="47296" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45623" g_stop="45582" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="336" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E710928" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47589" e_stop="47296"/>
          <exon e_start="45623" e_stop="45582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAATTTTGTTGGGTTTTAAGTGTTCTTAAGATGTTTCTCTGTTCTGGGTTAGTTTTAGTTTTTCATCTTTTTCTTTTTTTACTTTTTATGTGAAGCTTTGGCTTTGAATTCTGGTGTTGTTAGCTTTTTTTTTTGTTCTTGTTTGTTGGTTTTGTTCGTTGAACTTGGGGATTGTGGAAAGTTTAAAGCTTTATGTGAAAGCTGGTTAACTTTTGGTAGAAAAAAAAAGAAAAAGAGTTAGTGATGTAGAATTGATCTTCCTTTTCATTTCCTTTTACTGGTTATGCCTTTTTAGTTGTCGGATATAAAATTTAATTTTGCTGAAGTTTTCAAGACTTGAAATTTGCTATTTACACGGAATCGTGGATTCGGCATGGGAATTGGTCAACAATTTACTGGTGTAATTCCACCAGTGGGGTTTGGAGAGGGTAGATAAAGATAAGATAGAGAGGCAAAGGCATGGGAGTTGGTTGAACACTGGAAATATTGAGTTAATGTGTATGTGTGACAGTCTGGAACACTCAATGGTGTGACATAGTTCCAGTGAAATGGAAGAAAATCATGGAAGATCAGGGTTCAAATTCAGTTCTTGGCGATTTCTTTCAATATGACTAGGCCTTGGTGGGCAAGTTATCTGGTAGCGGTGCTAGTTATAGGTAGTAGTTATCTGACGGAGTAGTAGGTGAGGATGAGCCGGCACCGATATTATTGCTATTGAAGAAAAACATCAATGTGTTTTCGCTTTAGTGTATAGGTGCGATAATTGGACGAATATTCTAGCTAAAAGAGTTTGTTTTGCAAGGATTATCCATCGGCTGTTTAAGTTTATAGGTCTTCCAGCCAGGTAGTCCTTAGGATCGAGGACTTAAAAAGCAGTCTTGACTTGTCCGGGATTCTTTCTTGGAGCACTCTGGCTTTTATTTGATCCTCTCTAGAGTGACCTATATTTGTCAGTTTTAATATAAGCAGTTAGAGAAATCGTAATCATCTTTTGGATTGCGATCAAGCAGGCCTTTTTATGAATGAGTTTCTATTTTGGATATATGGACTTCGTTATGTCTGGTGAACTTGGTTTGTCTCCATGAAGCATTTCATCTTATCTCCAGTTTGGACTATTTACATTCTCTTAGAAATGTTGGCTTTGCTACTTCAATAAATCTTGGATTTAGTAACGTTAATTTAATAATTGTTTTTATGTCTAAATACATAAATAACTAGTCCTTGTTTCATATATGATCCTGTCAGTCTATATGTGCATTAAATTTGTCCAGCCATCCAGGATTGTGTCCTTGAAGGATCGAATACCCCGAATTGGATTTGAATGAGTTCCTTTCCTTATTCTTACCAATCTAAAAAAAAAGAGTTCTTATTCCAAATGTATGCCCAAGTATCTTGATCGTAGCCTCGGTGAGTAGCGTTATTTGGTACCTGTATTGGTGGGAGATAGTAGGTTACCGGTAGAACAGTTGAGGCGCACACAAGCGACTCAGACACCGCCTTCATTTAGAAAAAAATATCTTGATCTACTTTACCTATCAAAAATGGTATCTTGATCAACTTCAAACTTATGGGTTTAACTACTAAGGGACTATTATAGTTTTAGTACCTCACTTAAGTGCTGTAAGGTAACACCGTATATTCGTGTCTAAATCTGTTCACTTTTTCCTGCAGAATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGG</genome_strand>
        <mrna_strand>ATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTACAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAACCAGCATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331342" ref_strand="+" ref_description="SGN-E331342 [cTOD-9-G23]">
      <seq>taaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaagacaggaatatgcagggctattcatatgtgggaagatcttgaatcactgacgatgcctagtatagcaaatcctccgtatgtcatggaggaaattgcaaggagttgcaaaaattttgctgagctcaagataatggggccctgtgatatgctctttgcatctacactggtatcatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="96367" stop="95008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96067" g_stop="95731" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95537" g_stop="95308" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="567" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E331342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96067" e_stop="95731"/>
          <exon e_start="95537" e_stop="95308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCTTC</genome_strand>
        <mrna_strand>TAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344618" ref_strand="+" ref_description="SGN-E344618 [cTOF-14-M10]">
      <seq>tacactatcatcccgcatttttcacccaattttcttttgcgcacactctcaagtgaaacaacgatccaacaatttacctatgttctaaattaaggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaagacaggaatatgcagggctattcatatgtgggaagatcttgaatcactgacgatgcctagtatagcaaatcctncgtatgtcatggaggaaattgcaaggagttgcaaaaattttgctgagctcaagataatggggcccctgtgatatgctctttgcatctacactggtatcatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101153" stop="95010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100853" g_stop="100760" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95731" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="495" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95537" g_stop="95310" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="724" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E344618" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100853" e_stop="100760"/>
          <exon e_start="96131" e_stop="95731"/>
          <exon e_start="95537" e_stop="95310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATCATCCCGCATTTTTCACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGG-CCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCT</genome_strand>
        <mrna_strand>TACACTATCATCCCGCATTTTTCACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTNCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331541" ref_strand="+" ref_description="SGN-E331541 [cTOD-9-F21]">
      <seq>taaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaagacaggaatatgcagggctattcatatgtgggaagatcttgaatcactgacgatgcctagtatagcaaatcctccgtatgtcatggaggaaattgcaaggagttgcaaaaattttgctgagctcaagataatggggccctgtgatatgctctttgcatctacactggtatcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="96367" stop="95011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96067" g_stop="95731" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95537" g_stop="95311" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="564" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E331541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96067" e_stop="95731"/>
          <exon e_start="95537" e_stop="95311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTC</genome_strand>
        <mrna_strand>TAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269258" ref_strand="+" ref_description="SGN-E269258 [cLEM-18-A24]">
      <seq>ttttcttttgcgcacactctcaagtgaaacaacgatccaacaatttacctatgttctaaattaaggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaagacaggaatatgcagggctattcatatgtgggaagatcttgaatcactgacgatgcctagtatagcaaatcctccgtatgtcatggaggaaattgcaaggagttgcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101124" stop="95075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100824" g_stop="100760" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95731" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="466" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95537" g_stop="95375" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="629" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E269258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100824" e_stop="100760"/>
          <exon e_start="96131" e_stop="95731"/>
          <exon e_start="95537" e_stop="95375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAAT</genome_strand>
        <mrna_strand>TTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359024" ref_strand="+" ref_description="SGN-E359024 [cLHT-11-G5]">
      <seq>tcaagtgaaacagcgatccaacaatttacctatgttgttctaaataaaggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatacgtatatgtggactgtcagtctgataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaagacaggaatatgcagggctattcatatgtgggaagaccttgaatcactgacgatgcctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101105" stop="95127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100805" g_stop="100760" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95731" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="450" r_length="401" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95537" g_stop="95427" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="561" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E359024" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100805" e_stop="100760"/>
          <exon e_start="96131" e_stop="95731"/>
          <exon e_start="95537" e_stop="95427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTGAAACAACGATCCAACAATTTACCTA---TGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAG</genome_strand>
        <mrna_strand>TCAAGTGAAACAGCGATCCAACAATTTACCTATGTTGTTCTAAATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATACGTATATGTGGACTGTCAGTCTGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGACCTTGAATCACTGACGATGCCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331107" ref_strand="+" ref_description="SGN-E331107 [cTOD-6-D21]">
      <seq>tgaaacaacgatccaacaatttacctatgttctaaattaaggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgagaggtgtccacgtctaaaacgtctcgttatgcctgcttggaacagaataaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101100" stop="95186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100800" g_stop="100760" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95731" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="442" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95537" g_stop="95486" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E331107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100800" e_stop="100760"/>
          <exon e_start="96131" e_stop="95731"/>
          <exon e_start="95537" e_stop="95486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAGGTATTCCCCCAATAAATCTTCATCTTTCTATGGTACTATAACTTAAATCAAGAAACCGACAGCTAGCCATCATTCCAGAGTTCAGGGATCTGATATCTCAGATGCCCTACGATCTTCCATTGTTCTAATTTAGGTGAAGCAAAGTTTACTGTGAGAACAAAGAAGACAGCTAATCAAATCTCCTTCTTTTCAGGTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAG</genome_strand>
        <mrna_strand>TGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG.................................................................................................................................................................................................GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269776" ref_strand="+" ref_description="SGN-E269776 [cLEM-17-N20]">
      <seq>ttttcttttgcgcacactctcaagtgaaacaacgatccaacaatttacctatgttctaaattaaggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatactgccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101124" stop="95433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100824" g_stop="100760" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95733" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="464" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E269776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100824" e_stop="100760"/>
          <exon e_start="96131" e_stop="95733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAG</genome_strand>
        <mrna_strand>TTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317711" ref_strand="+" ref_description="SGN-E317711 [cTOB-8-F19]">
      <seq>ttgattccaaaacttgttctgggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttgtcgatattaaaatcaaattatatcaaaatcccattagagccatatgtatatgtggactgtcagtcggataaaacattgaccagcctcctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattacaatttgtatgtcagcgacgatcagttgacttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100976" stop="95440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100676" g_stop="100655" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100654" i_stop="96132" i_length="4523">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95740" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="414" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E317711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100676" e_stop="100655"/>
          <exon e_start="96131" e_stop="95740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATAC</genome_strand>
        <mrna_strand>TTGATTCCAAAACTTGTTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302040" ref_strand="+" ref_description="SGN-E302040 [cLEX-3-L12]">
      <seq>ttgcgcgcactctcaagtgaaacaacgaaccaacgatttacctatgttctaaattaaggcatgtaccaaatctctctctctattttcctccgttctttaaaggttgttttttcggattaatttttgattcaaagctggatcttgattccaaaacttgttctgggagcttgtattcccgaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctccatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggactggctcatgtttgtagcgcgcggcgattggcttgtactgatcaacttgtttggatgacgctggacttgtcgatattacaatcaaattatatcaaaatcccactagagccatatgtatatgtggactgtcagtcggataaaacattgaccagccttctgaagatttgtttgaacctcagtagaggaaacatacgaacattaatcttccattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101117" stop="95475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100817" g_stop="100655" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100654" i_stop="96132" i_length="4523">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95775" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="520" r_length="357" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E302040" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100817" e_stop="100655"/>
          <exon e_start="96131" e_stop="95775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTAC</genome_strand>
        <mrna_strand>TTGCGCGCACTCTCAAGTGAAACAACGAACCAACGATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTATTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTGTATTCCCGAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCCATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTGGCTCATGTTTGTAGCGCGCGGCGATTGGCTTGTACTGATCAACTTGTTTGGATGACGCTGGACTTGTCGATATTACAATCAAATTATATCAAAATCCCACTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTTCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543166" ref_strand="+" ref_description="SGN-E543166 [TUS-64-N12]">
      <seq>acccaattttcttttgcgcacactctcaagtgaaacaacgatccaacaatttacctatgttctaaattaaggcatgtaccaaatctctctctctcttttcctccgttctttaaaggttgttttttcggattaatttttgattcaaagctggatcttgattccaaaacttgttctgggagcttttattcccaaacatttaggagattgaagatttcttgatggaagaaggagattcttctgtaaggagatgggaggacctcgatattgatatcttggtgaagatactccagtcttttgacctttttgagttgacttctggacttgctcatgtttgtagtgcgtggcgattggcttgtactgatcaacttctttggatgacgctggacttggcgatattaaaatcaaattatatcaaaatcccattagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="101130" stop="95578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100830" g_stop="100655" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100654" i_stop="96132" i_length="4523">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="95878" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="430" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E543166" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100830" e_stop="100655"/>
          <exon e_start="96131" e_stop="95878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGGGTATGTTTGTACACCTTATGAAGCTTTTTTTTGTCTTATTTTTTGGCATCTTCTGGAGCTTAATCGTAGAAAGATTTGATTTTTTTGATCATACAGGTCTGAATTTGTGCTTGTGTGAATTTTTGTTTCTTTGTTTTTCTGCATTTCAATTATTAGTGTGGTATGATCAAATGGGGGAATTTTTTGTTCTTAAAGTTCAAATCTTTGTAGCAGTTGGTTTCAATTTACTTGTGATAACCTATCATTTTGTTATCGTAATGATTCTTTTGGAAAATTATAACATTTTTTTTACTTGTGTGTGTTAAATGCAAATGTTGGGTTGGTTATTTCGTCTTTTTTTTTTTTTTTTAAAAAAGAAGAGAAAATAGGGTTTTGGGGCATCTTACCTATATACTCTGTAGATGCATGTTAGTAGTTTGAGAGATTGATGGGAAATATTTTTTATTTATTTTTGGATGAAATCGAGGCTCACGTTGTCCTATGTGATAAAAATGTGTCACCGAGCCTTAAAAGGTAAGTTCTATAGGATAGTAGTTGGACCAATTATGTTGTAAGAGGTTAGGGGTTGCCTGTCAAGAACTCTCGCGTTTGGAAGATGAAGATAGCAGAATGAGGAGGATTAAAATATAGATGGATATGGATATGTGGGCATACTAGGAGAGACAAAATTAAGAATAAAGATATACAAGGCATGGTGGGTTGGGCAAGTTGCACGAAGCGAGACTGAGATGATTCATGCATGTGATGAGGAGCATAAATACCCTAGTGTGTGAAAGGTTGACAGTGATAGGTCTAAGAAGAAGTAGAGGTAGACTGAAAAAGAATGGGAAGAGGTTTATTAGATAAGATATTAAACATCTTTAGCTCACTGATGTCTGGTCAATAAAGGCATGGAATTCTTTGTTTTTATAAAAAAAAGTAGAAAATGGATTTGTCTGAACCAATACACGCTACTCATCTGTATAAAACCAATTGGTGTAGGCCATAGACAGAGAGGATGAAAGAAAGCCATAAGAACACACACACCGAAGCTAAAGGGGCCTCTCTATTTAACAAGTTTCTGTTGAAGCTTTTCACTAACTAGAATTCCTAGACCTTTTCTTCTTATTGATATTCATTGCCAGGCTGACAGAGAATCTTCTGTTTAATTGTTTCCTTCTTGATGCTTCAATTTATTGCTGATCCCTTTGCTACTACAAAGGCTTCCAAATCCCTGAGGATTTGTTTCTGAATTCAGCTGGATACCAGCACAAAATCAGTCCCTGATATACTGCATCTTTGCTTTCCGTTATAGGTGTGCGATCTACTCTGTTGACCTAAATTAAAAACCTAATGTTCAAAGTATCCTTGTCGGGACATACGCTTGCAATTGAAGCCATTTCGTAAAGGATTTTCTTTTTTCTGACAACTGCAAGATTCCCGATGGCCATTAACACACGGCTTTGAATCCAGTGGATAAAGAACCCGATCCTCTATCCTTCTCCACATAAATACAAGTGTTTTTTTTCTGCAACATGCTTCTAGCCTATGATGTGCGCCTAACCCATATATACTTGCTATGCTCTTATCACTAGACCAAAGTCCCGGAGGACAGTGCAGAAAGGCAGTCTTAAGTGTTCACATTGATGATTAGGCTGTGGAGCAATTTCTATTTTCTTTGACTTGATTTTAATTACCCATCCTTCCCTTCAATCCTATAAGTATGGCTGATTGGGAACATAAGGTGTGATAACTTAATATCTTTGATCAAAGACTCAATACAATCTTGTAGCTGACATCGATTTGAGCTGTAGCAGCAGGGACTAAGTTAGAGATTTTGTCTCTGAGCTGGTAATTTCTTGAGTAATGTTGGTGTTCCATAATTAATTGTTTATACTTAAATTGATGCTTCGCTCTTTGAGGAACATGTTGTATGGTGACTGGTGAGAACTCTAGTTTGTTTATGAGAAGACGACAAGAACCAAACTGAAGTCCCATTTCATTTAAGTTCTGTTCCTGTCCATTCTTTAAGCTCCTTCTGGGATGAATATTCTGCATCCTGGATAATTTTTTGGAGGTGGCCAGCATAGCCCTTAATCCTGAGGAATATGAATTACCAATTTTCAAAAAAGAAAGAAAGAATATTCTGCATCCTGAAATATTTGTACTCCCTATGTTCCAATTTATGCAACTTTTTTCCCATTTTAGGGCTTCCCAAAATGTTTGGACCCTTTCTATTTTTATAAATTTATCACAGTTTTTAAGTATTTAAGATCTATTAAATTATTCCCTCCTAAACTTTGATGTGATATCACTTTTCAACCACTAAATAGTTCTAAATGTATCATAGGAATGTCTTAAATATCATGCTCAGTCAAACATCTTCACAAAAAATGAGAAACGAAGGGAATACTCAAGAACAATAAGGGAATATTAATTGATTATAAAAGTTTGATACTTGTCCTCAGAGACTAAGCAAAATGTTCCTAGTTCTTTAGGTCCTCTCACTTTTTATTTTAAGCATGTTTTTTGTGCTTTTAGGTGCTAAGTTTAAATCTAAAAGTACTTGTGTTTTTCAGATTTTTTGAAGAGGATTCAAGATCCATCAGTTTTACTTGCTAGTTTAGCTTATTTAGAATTTAGTCATATGCAGATGCCCCTACCAACTATCCTTGGTTCTGTTGTTGAAGACTTGATATCAACACTCTATTTTTCCCAATTTATATGACACTTCATTTCGGGACATTACAAATTGTTTAATACCATTTCTCTTATTATTTCCTTTACTATGAGGATAAACTAGTACTACGTTGATCGTTATTTAACACAACACTCTTTTATTCAGGTCTGAGATTATCAAAGTTGAGTTCACGTAGACCGTTCATATGTCTAGACTCAGTTTCCACGTCAATGGTGTGATAGTCTGATAGACAAAGACATAACACATAAGTTTAAATCATATAGTTGAAATGGAGGAGTATTATGCGATAAGGGATACATACCAGAGTGAAAGAAAGGTTTTGTAAGGCAGTTGTGAGATCTATGATGGTGTATGGCGTGAGTGCAGGGTATCTGAGGTCGACATATCGAAAAAATGAGTGTTGTAAAAATGTGAATGGTAGGATGCTGTGTGGTCATACAAAGCTAGACAAAATAAGTGATGATTATTGAGAAGGTATAAGTAGCACATGTAGAAGCTAAAAGGAAAGATGTCCCTGAATTATAGTTTGGAAATGTGTACGTTAGAAGTTCAAATGGACCGTGTATGACACCATGATGGTTGAATGTTATCCAATCACATGGACAAAGATGTAATAAAGGACCTATAATTTCTCGATATTCTTGTGAAAATAGCATATAACAAAATATAAATGAAGCACAAGAACCATGGTAATTTCAATGACTATGATTAAGGTTTATTTTGTTGCTACACTTATATTAAGTATGTTGTTTGCCAGGAGTCTTTTTAGTTCATTACTGTAGTATTGGAAAGGAACTGCTCCAAATGGAGCTGAATATATATTGAGTGTTCATATATACTGACCTCAACTAGATTAGGTTTGAAGCATAGTTGTTGTGATGTACACTCCAACTCAACTTTAAACAAGTCAGGGCCAGCTATATAGATCCTTAATGTCATATCACTCCATATAAGCTGTTGTAAAATAGTATTGAAAATTTGAACCCGGGTAGAGCGGAATGGTTACAAAGGAACCATACATTTGAGATTAAGGCATACTTATTGTTGTACCTTACGAGTATTGTTTAGATGTCTTTGAAAAGTTTTAGGAATTCATTTTTACGAATTGTAGTCAAATTTTTAATGTGCTGTTTTTTCCTTTCACCTAACTCTTATAACTACTGCTACTTTATTATCTTTTAACTACTCTTTTCTAGATACACAAATTTTTTTAATTTTGTTATTTTCGTTCCTATTCACGAAAAATAGAAGGGATGGAGTATTAAGTTTTTGCATTCACCTTCTATTTTATTCCTGGAAATGATGTATCTTTTTCAGCAGACACTTGTCTCATTCTTCAGTTACTTGTCTTGTTCTTCAAAACATATAACAAGTCTTCTGCTTTTCTATCCTAATGCTAGGGACATTGAACTTCCTTCTTTAGGGAATATTATGTGCAAATCAATGTTTTTGTATCATTTTGCCTTTGGTGATGACTATTTTTGTCCAAATTGTCATACTTCCGTCAGCTATGGCAGCGCGAACTTAGTTCTCTGTCGTTTTCTATAACCAATTTAAGTTCCAGGTCAGGTTTTCCTAGTTCTTCACTTTTGGGAATCCCAGTACTCAGATGTATATGTACATTCTTCTATGCTTCTTCGTATTGCAAGGCTTAACTTTTTTGCTTCATGGTCTGAGTATATTAATAAAAAACAGAATGACAATTAGCAACATTGATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGATGACAATTAGCAACATTAATTTGATGTAAGAGTTCAAATATTCTTTTATGGATCTAGAGAAATAATAACCTTTCTTGTTTCTACAGGAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCC</genome_strand>
        <mrna_strand>ACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGGCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724477" ref_strand="+" ref_description="SGN-E724477 [FC24AH08]">
      <seq>aatcggccgaattggggtcgggtcgggcccgaagcggctctttccggctcaatacaagaggacgggtcttagggctatatgataatacgaattcttcgaagtgagttgtggaacgcccaattgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttcntgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103261" stop="108680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103563" g_stop="103900" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="350" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108379" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="623" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="676"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E724477" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103563" e_stop="103900"/>
          <exon e_start="108107" e_stop="108379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGTCGGGTCGGGTCCGAAGCGGCTCTTTCCGGCTCAATACAAGAGGACGGGTCTTAGGGCTATATGATAATACGAATTCTTCGAAGTGAGTTGTGGAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATG</genome_strand>
        <mrna_strand>TGGGGTCGGGTCGGGCCCGAAGCGGCTCTTTCCGGCTCAATACAAGAGGACGGGTCTTAGGGCTATATGATAATACGAATTCTTCGAAGTGAGTTGTGGAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713232" ref_strand="+" ref_description="SGN-E713232 [FB08AD01]">
      <seq>ggaacgcccaattcatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttcatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103360" stop="108680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103660" g_stop="103900" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108379" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="514" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="531"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E713232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103660" e_stop="103900"/>
          <exon e_start="108107" e_stop="108379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATG</genome_strand>
        <mrna_strand>GGAACGCCCAATTCATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290236" ref_strand="+" ref_description="SGN-E290236 [cLET-5-M24]">
      <seq>gaacgcccaattgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103361" stop="108677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103661" g_stop="103900" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108386" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="520" r_length="280" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E290236" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103661" e_stop="103900"/>
          <exon e_start="108107" e_stop="108386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCT</genome_strand>
        <mrna_strand>GAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295090" ref_strand="+" ref_description="SGN-E295090 [cLET-40-M3]">
      <seq>gaacgcccaattgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103361" stop="108677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103661" g_stop="103900" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108386" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="520" r_length="280" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E295090" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103661" e_stop="103900"/>
          <exon e_start="108107" e_stop="108386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCT</genome_strand>
        <mrna_strand>GAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715277" ref_strand="+" ref_description="SGN-E715277 [FB13DC11]">
      <seq>gcccaattgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacnncaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103365" stop="108668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103665" g_stop="103900" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108358" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="488" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="519"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E715277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103665" e_stop="103900"/>
          <exon e_start="108107" e_stop="108358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAA</genome_strand>
        <mrna_strand>GCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293717" ref_strand="+" ref_description="SGN-E293717 [cLET-21-J24]">
      <seq>ccaattgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103367" stop="108630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103667" g_stop="103900" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108330" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="458" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E293717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103667" e_stop="103900"/>
          <exon e_start="108107" e_stop="108330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACA</genome_strand>
        <mrna_strand>CCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275320" ref_strand="+" ref_description="SGN-E275320 [cLEN-9-J12]">
      <seq>ttgatctttgatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtatgcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgatcaaaggccacatcttccagtccgccccattccttctcaggtatggcgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggatactttttatttgaaatagcgtgacctataatgacaatgttccattgaataagacatgacaccgcgtgctctttttacaactgatcaaagcatgtcaacagactttcatgatggtcttctttgaagtattgctcgacttgctcatccaccatgtaccactgcgctttctatcaaagtagatccagaagaagctaaataagtgaattcttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103371" stop="108782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103671" g_stop="103900" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108482" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="607" r_length="377" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E275320" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103671" e_stop="103900"/>
          <exon e_start="108107" e_stop="108482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAA-ACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATAT</genome_strand>
        <mrna_strand>TTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTATGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGGTATGGCGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGATACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAGACATGACACCGCGTGCTCTTTTTACAACTGATCAAAGCATGTCAACAGACTTTCATGATGGTCTTCTTTGAAGTATTGCTCGACTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716632" ref_strand="+" ref_description="SGN-E716632 [FB17CE01]">
      <seq>cgtatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcctgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttcatgatggtcttctttgaagtattgttcgtcttgctcatccaccatgtaccaccgcgctttctatcaaagtagatccagaagaagctaaataagtgaattcttatatttgccttacatttggtgtgtataatgcaggtattggtgagtgattttacaattataatctctcttcttactagctcgactagttgagctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103381" stop="108875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103678" g_stop="103900" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108583" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="700" r_length="477" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E716632" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103678" e_stop="103900"/>
          <exon e_start="108107" e_stop="108583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTCAAATGCCAATA</genome_strand>
        <mrna_strand>CGTATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCTGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACCGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716449" ref_strand="+" ref_description="SGN-E716449 [FB17AD02]">
      <seq>gatcttttcatctgaaaactctttgcttctcatcagcggtagacggaaaaatggccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcctgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttcatgatggtcttctttgaagtattgttcgtcttgctcatccaccatgtaccaccgcgctttctatcaaagtagatccagaagaagctaaataagtgaattcttatatttgccttacatttggtgtgtataatgcaggtattggtgagtgattttacaattataatctctcttcttactagctcgactagttgagctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103380" stop="108875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103680" g_stop="103900" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108583" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="698" r_length="477" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E716449" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103680" e_stop="103900"/>
          <exon e_start="108107" e_stop="108583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTCAAATGCCAATA</genome_strand>
        <mrna_strand>GATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCTGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACCGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223725" ref_strand="+" ref_description="SGN-E223725 [cLEL-19-J10](-)">
      <seq>ccggcggaggagaccactctcatggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103434" stop="108658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103734" g_stop="103900" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108358" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="419" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="438"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E223725" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103734" e_stop="103900"/>
          <exon e_start="108107" e_stop="108358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAA</genome_strand>
        <mrna_strand>CCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224116" ref_strand="+" ref_description="SGN-E224116 [cLEL-19-J10](-)">
      <seq>catggtggagatttcaggactaaggtctggagtatgagtggtgggccgtactgtaggcccgtacattggaagcgcaataccgcaattgccctcgccggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103454" stop="108658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103754" g_stop="103900" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108358" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="399" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="418"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E224116" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103754" e_stop="103900"/>
          <exon e_start="108107" e_stop="108358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAA</genome_strand>
        <mrna_strand>CATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216705" ref_strand="-" ref_description="SGN-E216705 [cLEL-1-B5](-)">
      <seq>catcggaagcgcaataccgcaattgcccttttcggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagccgtgacctataatgacaatgttccattgaataaacatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103517" stop="108631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103817" g_stop="103900" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108331" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="310" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E216705" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216705" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103817" e_stop="103900"/>
          <exon e_start="108107" e_stop="108331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAG-CGTGACCTATAATGACAATGTTCCATTGAATAAACATGACAC</genome_strand>
        <mrna_strand>CATCGGAAGCGCAATACCGCAATTGCCCTTTTCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216801" ref_strand="+" ref_description="SGN-E216801 [cLEL-1-B5](-)">
      <seq>cggaatcgtactcgtttgcattcctgtcgccttgaaatctgccgagctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattcaagcatgtcaacaaactttcatgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103549" stop="108680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103849" g_stop="103900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108107" g_stop="108379" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="325" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="350"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E216801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103849" e_stop="103900"/>
          <exon e_start="108107" e_stop="108379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAGGTCAGTACCTCCATCCCTCCCTGTTCTCCAGTCTGATCTGAAATGTATTGATAGGTGGTTGGAAATGGAATAGTTTGCTGTAATTTTGGTAAAATATCTGATCTTGTTGACTTCAGCTTTCCGTGTGTATTGATTTATGTTAAAATTCATTAATTTTATTAGATGTAATTGAATCACCTATTTCTGCTTGGTCTCGTGAGGTAAAACACAATCTCATCTCAACTTTTAGCTTTAGTTTTTTTAGGGAAGAAATCAAAGTTCTATATTTTATGCTTTGCTCTACTGGCTCGATGAAATTGGTATATAAACCAAAATGAAGTTCTTATAGTCATGTGGAAACGTGGGATGATGAAGATTCATTGGAGGATTTGCAATACCGTTATAGGGAACAGTGTTGGATGGTCAGGTGATGTGAGGAAATATGAATGCATGGACAAGACCATCACAGGTTGAATGCTCAACCTTTGAGGGATATATTAAACCCAGTGTTTTCTGACAGATCAATCAAACTACAGATGGGAAGCACCTTTGTTTTACCTTTTCTGGTCATCCTAATACCAGCTCTGTATAATTTGGTGCCATACCAGTGACTAAGTAGGGTACCTATTTCAACTCTGAAACCCCCTTCCCCTATCATTAGGTTTATCTGCAAAAGAAAGAGAAATGCCTTTAGAAATAGCTGAGAAGTGTGAAAAGTGTGCACTTTTTGGATACTCTTGTAATGCTCCTTTGAGTCCCGACACAGGCAAAAGTTTGGTATTTAAGTAGAGAAGTGTAATGGGCAAGCCCATTATCCACCGAGTTTCAATCCATATGTCATGGTTCTTGGTGTTTTCTTAGTTAACAGAAAGGAATCAAAGATAATCTAGTGATTCTCTGAACATACAGATTTTAGAAATGGTCGCTCGCACTGTAACCTCCCACTCTGCAGATTGGTTATCTTAAATGGGGAATCATTGATTATGCTAGGCAAAATTGTGAGGGAAGGGGTGTGTGTTCACTAGAATGCCTCCTTTATTCCTGTTCTACATGTGTTGCCTTTTGTTTTCCTTCTAATGTTATCGTCTTGTCCTTAGTTTGTTGATCAAACGTTCAGCCTGCTTATTTGATACTTTTAGTTAGATGCTACAAATTCTGTACTTATTGCTGTCAAACAAGTTCACCTTAAGCATTTTTAAAGAGTAATAGTGTATAAGTAAAAGAAACTGAAGTATTTGGATCATTGGTGCAAGCAAAGAAGATTTTGCCTGACCAATGTTATGTTGTCTGCAAGTTTGAAGCCTCTGTTCAACGCTGATACTGAGTCAGTTTTGTCATGTAAATGGTTGCTCTTCCATCCCAAAGAATAATGGATATTTTCTAGAAGGCCAAATACATAGATAGACACTTAGAGTTATCATCATCTTCCAGTTGTTTATTATCCTCGTGACTAGTTGGACACTTCTTAATTCTCATTAGCATAATGGACCGGGCACACCCTGATCTAACCTGACAATACACTATTGGTGTGTTCACTTTTCAGCGCAGGGGTGTATTTAGAACCCATCTCCGGCTATTAAAAAGAAATTAAATTTCCCCTTTTACCCTTTCGTTTACCCAAATTGGAAACCCTAATTTGATATGGCAAATATTTTTATTTTTATAATACTAATAGCAGAAAATACTGTTCAAATTGTGGAGTTCTGTAGTAAAAAAAGAGGTATAAAACAAACCAAAAAAACCTCTATTCATCCTTACGAAGATTCTAGTACTTAATATATATATATATATATATATATATATAATAGAACAGATAGAATATGAAATATAAATAGAAGAAGTTGAGGAGAAGGGAAAATCGGTCAATTGACCGGCTGACCCTAAGCTCCTCAACATTCGCTTCTATAATACACACACACACACATTCTGTTTGCACCAGTAATGGAACAACATCATGCAATTCAATTTATTTTCTGAATTAAATTGCCCTTATTTTTGGAGCATCTTAAGATCCTCTCCCTACATTTGACCCACCATATGCAAGATGAAGATATGCTCCATCTTCTTTTCTGATTTAATGATCCTCCACTTTGCCAGCTTGACAGCAGTGCCAGAGTTTTCTCTGGCATTATCCAACTCAAACCTGTCATAACCAGAAAGAGGCCCAATAAATGTGTAGTCACTTTACATGTAGAAACATGTAGCTATTTGTTTATGCAAAATTGAACAGGTTTTGTTCCCCTCCTTTTTAAGGTTCGCAAGTTAAACATGCCTCCTCCATACCAGCCAACCAAAGTAAGCCATCTTGTCTGGGATTTTAACCTTCCATATGTGCTTCCGAGGCCACAATTTAGTTTGATCGTTGGCATGGTTCAGATGATTTTATGAAGAAGCTTCTGAGTTATGCCCTAGCCACCATAATTTATCTTGATTCCGGTTCACCACTGTGAACTGCTTGAGTGTGTTGAAAATCAGTGAATCTAGCTATCTCCCAATCATTCATTGGTCTCTTAAAAGTTAAAACTGATATTCCACCCCTGTGCAGTCCATACTTCATTAGGCTGGGCTTCTGTTGCTGGTTTAGAGTGTAGATATCAAAGAATAGTAGCCTGAGAGGCCAAACCAGTTGTCCTCCCAAATAGACGTGTCTTGCCAATTTCCAATTCTGTAGCTGATCCTAAAAATTTGCCAAAGAGCGTTGATAGGTTTCCAAACACTAAAGGGTTGTTTGGTTGCTAGTTAGGAAGAGAGTTATTCATGTATTAATAGCTAATATCATGTTTATTAGCTTTTAATTGATTTGTATAAAGTTCAGCAAACCATGTATACTGTTCAGTTATCAATCATCATTTTTCAATTTCACATTAATAAGATATGTTTAAGTCAATGAGTCAATTTATGTATTGTTTTATGTGGAGTAGAAGATGGAATAACTAATACATGGATTAGTAATACATAAATAACTACCCCATACATAGCTCCAACCAACAACGGTATGACCCCGAACACTATAAGCAGTGGTTACCTCCTTTGTTTTCCAGAAGCACTCCTCTCTATGTTTACCTTTTGATTACTTTCTTCCGCAGGAAGTGATCTTCATTAGATATCTCCATAGCCATTTTATGAGAAGACTTTGATTTTATTTCCTCAAGTTCAGAATACCTAGGCTTCCCTTCCTTGTTTTCTGTTTGACAAGATGAGAACCTCCCCTTTTCTTGTGGTCTTGCCCAAAAAATTTCTTAGTGAGGGAGTTGTTTTGGTGATGGTTTCAAAATGGAGCTTCTGGAAATTCTTCTACAGTGTTGTCAATTGTGGTGGTTTATGGTTCAAAGGTGGAAGAGTATAAGAAAAAGGCGAAGTAGCTTTGTTACCATTTTAAAAAAATGGAGGAGTTACACTGGTAAAAATATGGTGGCTGATGTTGCCTTGAGTTAGTAGAAACTTGCCAAAAAAATTATTTTCAGCATAAGTGGGCAAGAACTTGAATGAACTCAACAGGAAATTTGTCGGACCCAAGCTCATGGTGCTTGAAATGCCAGTTTCTAAACCAAAGTGTTATGGTCTCAGACTCAGTTTGGCTCTGCGGTGTCAGGTCGTATGACTAATGGTGGAAATATATTTATGGGGAGAGGAAATGTGAATGGAATTTTGGGATGAAACTTTGAGGAGGAGCTGCAAGTATTTGGGGTTGTCCAACTAGGGTGTTAGATTTTCTTCTCAGGTCATTGAAGATCCCATTTTTTCTGCCTTGGAGGTTAGGGGAAGGTTGCATTCACTTTTTAGGGAAGCTAATTGAGGAGGTGGTTGTGTGGTGTTTTTTTTTTAAAAAAAAAATTATTGCATCTCAAAAAATTATAAATGACAATTTTTTTTATAAAAAATAACGTGTTAATTTATTGGTTCATTTGACATGTCAGCAATGATTGCACACATGTTGTTTAGAACCGGTATCCAAAGCACACTTACGCCATTGAGGAGTCTAACTTGTTACAAGAAGTCTGAAGTGTCTAATTAGCAGTTGGTGACAACTTTTAGTGTCTTTCTTTGTGTTTTGCTTTTCTAAAATAATGTTTAGTATCTTCCTTTTTATCTTTTATTAACAGCCTGCTCTCTTGTTTTACTTGCATTTCTTGTTCTCCACCGATCAGCGATGTATGGAAGTTTACTCTGTATTTCTGTTGGGGGATATTTGATATTCATGCAATAACAAGTTTATCAATTTTGCAGCAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATG</genome_strand>
        <mrna_strand>CGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTCAAGCATGTCAACAAACTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230406" ref_strand="+" ref_description="SGN-E230406 [cLEL-35-J5](-)">
      <seq>gctcgagcaaaggccacatcttccagtccgccccattccttctcagctatggtgcaagaactttggaacaaaagactactagttttgttagtgaagcaacgatagtagcttgctgtggggaagatgatcgccttgccttctgtatttggattctgaactgcatttcatggttactttttatttgaaatagcgtgacctataatgacaatgttccattgaataaacatgacaccgcgtgctctttttacaactgattaaagcatgtcaacaaactttcatgatggtcttctttgaagtattgttcgtcttgctcatccaccatgtaccactgcgctttctatcaaagtagatccagaagaagctaaataagtgaattcttatatttgccttacatttggtgtgtataatgcaggtattggtgagtgattttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107801" stop="108839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108107" g_stop="108532" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="433" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="449"/>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E230406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108107" e_stop="108532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACA</genome_strand>
        <mrna_strand>CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744463" ref_strand="+" ref_description="SGN-E744463 [GI|399608]">
      <seq>actgattaaagcatgtcaacaactttcatgatggtcttctttgaagtattgttcgtcttgctcatccaccatgtaccactgcgctttctatcaaagtagatccagaagaagctaaataagtgaattcttatatttgccttacatttggtgtgtataatgcaggtattggtgagtgattttacaattataatctctcttcttactagctcgactagttgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108049" stop="108872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108349" g_stop="108572" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E744463" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108349" e_stop="108572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTC</genome_strand>
        <mrna_strand>ACTGATTAAAGCATGTCAAC-AACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279095" ref_strand="-" ref_description="SGN-E279095 [cLEL-4-I22](-)">
      <seq>gcacgaggaaacccagatgccaagaactgtaccggaatgggtgtaaagaatctttgggatatcttggaaccttgcaagaaaactcttcctcttcatcatctccagaacaagagggtatgtatagatctatcttgctggattgttcaacttcagaatgtcaacaaatcccattgtgcgatgaaggagaagctttatctcaggggcctatttcaccgcgttagagctcttattgctttgaattgtagcgttatctttgttactgatggagccattcctgccatcaaatcatctacctatagaaggcgattaaatcttggaaatgtgctcactcaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109924" stop="111269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110217" g_stop="110320" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110321" i_stop="110411" i_length="91">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110412" g_stop="110569" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="262" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110570" i_stop="110905" i_length="336">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110906" g_stop="110967" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="324" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110968" i_stop="111109" i_length="142">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111110" g_stop="111122" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="337" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E279095" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110217" e_stop="110320"/>
          <exon e_start="110412" e_stop="110569"/>
          <exon e_start="110906" e_stop="110967"/>
          <exon e_start="111110" e_stop="111122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTGAAACCCAGATGCCAAGAACTGTACCGGAATGGGTGTAAAGAATCTTTGGGATATCTTGGAATCTTGCAAGAAAACTCTTCCTCTTCATCATCTCCAGTTAAGACTCTTCCCACTTGGCTTTTACATCTTTTTCTCTTGTTTGGAATTGGGATTTACATTTCTTCTACTTAATTTCGTGTGAAAATAGGAACAAGAGGGTATGTATAGATCTATCTTGCTGGATTGTTCAACTTCAGAATGTCAACAAATCCCATTGTGCGATGAAGGAGAAGCTTTATCTCAGGGGCCTATTTCACCGCGTTAGAGCTCTTATTGCTTTGAATTGTAGCGTTATCTTTGTTACTGGTAATTTTGTTTCTTTCTTTGAGAAGATTTATAATGGGGTTTTACAAAAAAAAAAAATTAAAAATGTATACTTTACTCTTTTTCTTGTTGTATTCATAATTAGTTTGACGGTGTTTTACTTGAAGATTCTTAATTGTGGTATTCTAGATAATTTTAAGATTTGAGTTTGGTTCCAGATTAGTATTGTTGCTTCACACAGTTTAGTAACCTATGACAAGAGAAATTTAAATTCTTTACATATCTAAATACGTCTGGAATATGCATATTGGGAAATGCTGTAGTTAATACATGATAGTTGATACACATTTCAGTGGCTTCCTTTTTTTCCTTTTCCAGATGGAGCCATTCCTGCCATCAAATCATCTACCTATAGAAGGCGATTAAATCTTGGAAATGTGGTAGGATTACTTATTTACTTCCTATTTTTCCTTATCTCCTTGTCCAAAACCTCTTGAGTCTGAGTCTTAACATGCCTCTTTTTCAATTGGTAAGCATTCTAGTTTAAGCTGCTCATTACACACTAGTTTTTTTATGATGTAGCTCACTCAAGATG</genome_strand>
        <mrna_strand>GCACGAGGAAACCCAGATGCCAAGAACTGTACCGGAATGGGTGTAAAGAATCTTTGGGATATCTTGGAACCTTGCAAGAAAACTCTTCCTCTTCATCATCTCCA...........................................................................................GAACAAGAGGGTATGTATAGATCTATCTTGCTGGATTGTTCAACTTCAGAATGTCAACAAATCCCATTGTGCGATGAAGGAGAAGCTTTATCTCAGGGGCCTATTTCACCGCGTTAGAGCTCTTATTGCTTTGAATTGTAGCGTTATCTTTGTTACTG................................................................................................................................................................................................................................................................................................................................................ATGGAGCCATTCCTGCCATCAAATCATCTACCTATAGAAGGCGATTAAATCTTGGAAATGTG..............................................................................................................................................CTCACTCAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347339" ref_strand="+" ref_description="SGN-E347339 [cTOF-33-H1]">
      <seq>gaaaacagatgagtatatccttcctaagattgctgaaagggaactgcggagatttgccaacttgcggtccactgcatcacaactgggagttcagcttccactaaatgagatgccaataaagtgtccattatctcaaattgtcaagccaagaaaagttcaaggagtcgattgctttgaggtgtcttgggaagaaatggatgggcttgaaacctccatagtaccagctgatcttgttgagagggcttgtccggagaggattttggagttccaagaaagacgagctcaaggaaagaaacgaaacaatgctcgatcaagaccaagaaaaccagaaaatccacagcttttgggtcaaattgaccagaaactccaagacctcttgcttgagattgatagagaaacctctactaccaatgatgccacttctttatgtagatcagtaccagaggatgatgacgacattgctcatattcaggtggtagatacaggtaaacagtcccattatacatggaacagcaactgtgtgaagaagggtggtgattntacttatgggatcaccagtttccaagagagcaacatttcacaagtttcatctgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="+" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="113601" stop="116267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113680" g_stop="113687" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113688" i_stop="113903" i_length="216">
            <donor d_prob="0.728" d_score="0.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113904" g_stop="114004" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="109" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114005" i_stop="114550" i_length="546">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114551" g_stop="114681" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="240" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114682" i_stop="115609" i_length="928">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115610" g_stop="115967" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="598" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="+" ref_id="SGN-E347339" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113680" e_stop="113687"/>
          <exon e_start="113904" e_stop="114004"/>
          <exon e_start="114551" e_stop="114681"/>
          <exon e_start="115610" e_stop="115967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAGGTGTTTTTGCTGAACCAAATACACAGATTTATCAGACCTGTTTCTTTTGGTTCAACATCTATCATGGATAATTCCAATTACAGTTACTCAGCTGTCTGTTTTTTGATAAACTATAGTTCCATTTTTCCTACTAGTTAGAAAATTATGTACGCTATTATGTTGGCACAATCAATGAGAAGCTTTTCTCTGAAAATCCTCTGTTCTTTGTTGGCTCAGATGAGTATATCCTTCCTAAGATTGCTGAAAGGGAACTGCGGAGATTTGCCAACTTGCGGTCCACTGCATCACAACTGGGAGTTCAGCTTCCACTAAATGAGGTAGCTCATTATACTGCAATGACTGCTCAGTGTTATGAGAAATAACTTTTTGTGCTTCAACCTCAATGGACTCTCAAACCAACTTTGCTTCTGTATAGTAGTTTATTATCAAGACCATTTTTGCAGTTACACCCTTACGTCTACCTGAGAATGTTCCTTTTATGATGATAGAAGCATCTGCAGAACTTCAACTGACTTGCATTTAGAGATGATAATGCCACCTTTTTTATTGCTTCTCCAAATTGTTGCCTGTCCCAGTTAACTAACCCAAAATAGTTGCTGTTCTGGTTACTAGATGAGATATGGTTGTGATTTTTTGGATGTTTGATCAGAATAGCTACTCAGGGAACTGCCTTTCAAAAAAAAAAAAAGTAGCTTCTCCAAATTGTTGCACGTGCAATGATGCATTTCATCTGAAACTTTTCTATTAGAGTTATTGTTTTCTCAATATATTTGTGATTATTTGTCTATGAAAAATTCTACTACTATATTTCATTTTATCAAGTGTGTTTCTGGAAATGATCTCTAAGATCTGAACATGAACAGATGCCAATAAAGTGTCCATTATCTCAAATTGTCAAGCCAAGAAAAGTTCAAGGAGTCGATTGCTTTGAGGTGTCTTGGGAAGAAATGGATGGGCTTGAAACCTCCATAGTACCAGCTGATCTTGTTGAGAGGTATGTCAACTATAAATTGATTTGTTCTAATGAATTAAGGGGCTACTAAGGTACACAATGATCAGTAAGGTCAGGTTTTATACATCAAAGCAATAGGAAAAAACTATTGCTTTAACCATTTTGATACTGGTTTTCAGATGGTTAGGAAGTCCAATTACATTGTTGTGAAGATAACGGAATTTGTTTATGAAACTATAAAGTAAGAAGGAGAAAGTAGTAGTGAGAGGAGAGAAGACTTATTATTTCTTTGAAGGGATGTATTTACAATGAAGGAACCTTTATTTATTGGGAAACTTGACTCAGTTCCCAAGAGATTCACTAGAATACAAATATGTTTATCTCAAGGGTTGGTGATGGTTGTTGACCTAATGCAACTTTATGCTATCAAACACAACACATTAAAAGGTGAATAGTATCTGTAACAAACTACATCTTGCTTGGGTATTTTCTATGCAGACCTAAATATTTTATGTTTGAATATCAAAACGTTTCATGATACATTATCATAGATTCACATCATGTACCCCATGCAAGCAAAAACTGGGAAGTAGACTTCTTTTGGCAACTGAAGAAACTTTCTTGGAGTTTAAGTTCTTTACACTGTCGGCATAAAAGATATTTTATGCTACTCAAGTTACTTATCCACAACATATTTAGTTGAACTTGCTAAGGTCACGCAGCACTGAAACATATTAAATTCAATGAGGATGGATTACTCAGTATACAAGATGACAAGAATATGTATGATTTGCCAGCCATCCTCAGGTTTTTTGGGTGATGTTGACATAAAATACATGAATTCAGTGATATAGCAATTGCTTAGAGATTATGCACTCTGATTGGAGATCCATTCAAATAAAATACAAGCCTCCTAATTTGTTCACAAATTACACTGTTTGATCCATCATTCATCTCTTCTTTCCAACAGGGCTTGTCCGGAGAGGATTTTGGAGTTCCAAGAAAGACGAGCTCAAGGAAAGAAACGAAACAATGCTCGATCAAGACCAAGAAAACCAGAAAATCCACAGCTTTTGGGTCAAATTGACCAGAAACTCCAAGACCTCTTGCTTGAGATTGATAGAGAAACCTCTACTACCAATGATGCCACTTCTTTATGTAGATCAGTACCAGAGGATGATGACGACATTGCTCATATTCAGGTGGTAGATACAGGTAAACAGTCCCATTATACATGGAACAGCAACTGTGTGAAGAAGGGTGGTGATTTTACTTATGGGATCACCAGTTTCCAAGAGAGCAACATTTCACAAGTTTCATCTGAAGAT</genome_strand>
        <mrna_strand>GAAAACAG........................................................................................................................................................................................................................ATGAGTATATCCTTCCTAAGATTGCTGAAAGGGAACTGCGGAGATTTGCCAACTTGCGGTCCACTGCATCACAACTGGGAGTTCAGCTTCCACTAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATAAAGTGTCCATTATCTCAAATTGTCAAGCCAAGAAAAGTTCAAGGAGTCGATTGCTTTGAGGTGTCTTGGGAAGAAATGGATGGGCTTGAAACCTCCATAGTACCAGCTGATCTTGTTGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTCCGGAGAGGATTTTGGAGTTCCAAGAAAGACGAGCTCAAGGAAAGAAACGAAACAATGCTCGATCAAGACCAAGAAAACCAGAAAATCCACAGCTTTTGGGTCAAATTGACCAGAAACTCCAAGACCTCTTGCTTGAGATTGATAGAGAAACCTCTACTACCAATGATGCCACTTCTTTATGTAGATCAGTACCAGAGGATGATGACGACATTGCTCATATTCAGGTGGTAGATACAGGTAAACAGTCCCATTATACATGGAACAGCAACTGTGTGAAGAAGGGTGGTGATTNTACTTATGGGATCACCAGTTTCCAAGAGAGCAACATTTCACAAGTTTCATCTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701489" ref_strand="+" ref_description="SGN-E701489 [FA16AE03]">
      <seq>ttattgctctcatggctcaggttggatcctttgtaccagcgatctctgcaaaactacatgtactggatgggatatatactcgcatgggtgcatcagacagtattcagcagggaaggagtacattcttagaagaactcagtgaggcttctgatatactgagaaaatgctcagccaattcactggttatacttgatgagcttgggagaggcaccagcacacatgatggcgtagcaattgcttatgcaacacttcaatatctcctggagcacaaaaaatgcatggttctatttgttactcattaccctgaaattgtcagtatcaagaataagtttccaggctctgtgggaccataccatgtgtcatatttgacatcccaaagagatgtgaatggggatttcaagtcaaatgagaagatggatcacattaatggtgaggacatcacctacctatacaaacttgcaccaggtgtttctgggagaagttttggttttaaagttgctcagcttgcacaactgccggtcacatgtattcagcaagccattgtaatagctgcaaaactggaagcagcagtctgtaactacactgaacaacaatttcgaaggagctgttctctaagccataggcaagatggctgtaaaaatgaacccacagaggatgtcctagaatcagattccttgtctgctggaatagttgaaggcttagacgacatcagtgagctttacagggagttgtttctgaaccttaactatgcatatcttgaagaacatggtaatgacaggagactccagtttctaatgcaagctagaaagcttgcagctcagttaataagtaggtaaatgctggtaatgaaactgcctgcctgcttgtacagtaggacaccactattttgatccaaatatagatggtgaatatcttgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0114P24-gYLQb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C03HBa0114P24.1" temp_strand="-" temp_description="C03HBa0114P24.1  AC238450.1 htgs_phase:2 submitted_to_sgn_as:gi|260064221|gb|AC238450.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0114p24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="121437" stop="117340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121137" g_stop="121118" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121117" i_stop="119934" i_length="1184">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119933" g_stop="119442" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="512" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119441" i_stop="119193" i_length="249">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119192" g_stop="118873" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="832" r_length="320" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118872" i_stop="117730" i_length="1143">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117729" g_stop="117640" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="922" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0114P24.1" gen_strand="-" ref_id="SGN-E701489" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0114P24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121137" e_stop="121118"/>
          <exon e_start="119933" e_stop="119442"/>
          <exon e_start="119192" e_stop="118873"/>
          <exon e_start="117729" e_stop="117640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCTCTCATGGCTCAGGTAATGCCATACTGATGCTTGCTTCTATGTTATATCTCTAAAATTCTTTATCTCACTATCTTTGTGTGACCTTAGGCATGGAAATATTTCTTTTATAGAAGAATGTATGTGAAGGTAGAATTAGCAGAGAAGTGTATGACACACATCTCTGTACAGTATGACTAGGTGTCTCTGACAGTGTGACTGAAGGAACAATTCCTTAATAGTTGACTGGTTAAAAATAAAGACTGTAATCAAAAGAGTATTTTCCTTGACTATTTTAAAACTTTCCTGGCAACTGCAGCTTATCATAATCTTTTTATTGTAGAACTGGCTTCTAGTTGTAAGGCTGTTCTCATGTAATTGATAAGGATTGATTACTTATATCCAGTGTTGTGAATGGCGAGCGCCTCATCGCCAAAGGCGAGAGGCAATGCGAGGCGAGCCCTTCTCGCCATTCCACACTAAGGCGAGGCGAGCTAATGGCGACAAAAATGGCGCCGCCTTTTTGATTTAAATTTTTTTAAAAGATTTGACTTAACAATATTAGTCAAAATTAGGGTTTTTTTTGTTTATTTTCAAAATTTGCTGCTGCCCAACTCCTCTTCCCCTCGCGATCTCTTCGCGCCGACTCCTCTTCCCTTCGCGATCTCTTCTATTGTCAAAATTTGCCGGTCGCGTCTCTTCTCCTGTTTTCCATAATCTTCAAGGTGCTGCTGCACTGAGGACCTGAGGTATACCTCTTTTTTTCTTCTTCTTTTGATTTTTTCAGTTCTTCTTGAGTTCTTTTCTTCAAGAGTTGGATAGTTTTGAAGAAGAATAGACATTTAAAGTTTTAGTATTGTATTTTGGATTTTTGGTCTTTAAAGTTTTACTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTACTATTAAGATTTTGGATATTTATGTATGCAATTAAATATTTTTAATTTTTGGTATTAATTGGCGCCTTAATTCAAAAAGGCAAGCGCCTCACCGCTCGCCTCGCCGCGTGGTGAGGCAGGCCCTTGTCGCCTTTTGTCGCCTCTCGCCGTTCAAAACACTTATATCTCAAACAAGTGTAATTGGAAAGAAGTTTTAATGATGGCTTGTTAGTGCAAATCTGTCTACTGAAGATCCACAATAGTATGATTTAATAAAAGGTATTCTTTTCCTCCTGGGTACCTCTAGGTTGGATCCTTTGTACCAGCGATCTCTGCAAAACTACATGTACTGGATGGGATATATACTCGCATGGGTGCATCAGACAGTATTCAGCAGGGAAGGAGTACATTCTTAGAAGAACTCAGTGAGGCTTCTGATATACTGAGAAAATGCTCAGCCAATTCACTGGTTATACTTGATGAGCTTGGGAGAGGCACCAGCACACATGATGGCGTAGCAATTGCTTATGCAACACTTCAATATCTCCTGGAGCACAAAAAATGCATGGTTCTATTTGTTACTCATTACCCTGAAATTGTCAGTATCAAGAATAAGTTTCCAGGCTCTGTGGGACCATACCATGTGTCATATTTGACATCCCAAAGAGATGTGAATGGGGATTTCAAGTCAAATGAGAAGATGGATCACATTAATGGTGAGGACATCACCTACCTATACAAACTTGCACCAGGTGTTTCTGGGAGAAGTTTTGGTTTTAAAGTTGCTCAGCTTGCACAAGTGAGTTTCCCTCTTTTCATGCTTCCTCTTTGTGCAGGTCCAATAAAAGACAGGCTCAATGAAGCCTGATAGTAAAATTTAATGTGATACTAAAAGTTGGACACTAGCTAAAGTTTTCAGTCATTGATGCCAGTGTCTTTTTACCTGTTACTCAATTGCCTGGGTCAATGTGTGATGATTTCTGGTCAGATCTTTTCAATTGGTTTATTCAAACATCCATTGTTTATCTCATGTTCTTGTTTGTTTCAGCTGCCGGTCACATGTATTCAGCAAGCCATTGTAATAGCTGCAAAACTGGAAGCAGCAGTCTGTAACTACACTGAACAACAATTTCGAAGGAGCTGTTCTCTAAGCCATAGGCAAGATGGCTGTAAAAATGAACCCACAGAGGATGTCCTAGAATCAGATTCCTTGTCTGCTGGAATAGTTGAAGGCTTAGACGACATCAGTGAGCTTTACAGGGAGTTGTTTATGAACCTTAACTATGCATATCTTGAAGAACATGGTAATGACAGGAGACTCCAGTTTCTAATGCAAGCTAGAAGCCTTGCAGCTCAGTTAATAAGTAGGTAAAGATAAGTCAATTTATCCTATCTTTCTTTCCTCTGTTTTTCTGTACTTCTTGTGTTCCATTTACATGACAGTCTTTCCTTTTGATCCATTCCAATAATATTGACACATTCTACATTCAGAAACTCTTTTGTTTCACCCTTTCCATTTTTCTCCATGGAAGGGGAGAGCCTTGGAGCAACGATAAAGTTGTTACGTGTGACCCATAGGTCAAAAGTTCGATCTGTTGAAGCAGCCATTAATGCTTGCATTAGAATAGACTGTCTACATCACACCTTAGGGTGCAGCCTTTCTCCGGACCTTGCTAACGTGGGATGCTTTGTGCATCCAGCTGTCCTTTCCATTTTTCTCCTAATAACATGTTATTGGAATGGCATGACATGTTGAAGACAACATTCTAAGGATACTTTTGGTATGCTAGTATATCGCCTCCCTTTTCAATTTATATGACCTTGTTTGACTAGGCATGGAGTTTAAGAAAGAAATAAAGACTTTTGATACGTGTGGCTTCAAATACGCCATAGCATTTGTGTGGCTAGAGAACTTTTGTTGTGGTCATAAACATGTTTCAACATTCTTGTGACTATAAAAGATTGTGAATAACAGTTTCCATAAAAAAAATTAATAAGAGAAAAATGGGAAATTTAAGTAACTTTCCTTTTGTCACGGACTAATAACGAAATAGTGTCATTCTTCAGGAACGGAGGGATTGGTTAATTATGCATCATCTATCTTTTTTCCTTTCTAAATTAGGTGTGTTCCAATTTCTCCATGTCCGGTGGGTCAAACTTTTTGGAAAACATGTGACTTTGAAACAAGTCACTTAAAAATGAGAAAAATGACTACCCTAGTGGAAGTACGGAAAAAAAGTTCCACAAGTGGCATACCACATTGATTGTGCCCTACAATCCTCCAACACACATCTCCTTCATCCCACCCGACACCCCTGCCCCTGCCCCTACCCCTACCCCCACATCCCATAGTAATTGTTTAGGTTATATACAAATGCTTTTAGGATAATATTCTTGCTTATGTACCAACCAATGAACATAAGAAAATGATTCTTAGAAAATATTTTTCGTGGCAGTACTTTGCTTATGTCCTACTGTTCCATCATGAAAAAGATCCTTCTCATTTTGCAGGTAAATGCTGGTAGTGAAACTGCCTGCCTGCTTGTACAGTAGGACACCACTATTTTGATCCAAATATAGATGTTGAATATCTTGCTTTTT</genome_strand>
        <mrna_strand>TTATTGCTCTCATGGCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCCTTTGTACCAGCGATCTCTGCAAAACTACATGTACTGGATGGGATATATACTCGCATGGGTGCATCAGACAGTATTCAGCAGGGAAGGAGTACATTCTTAGAAGAACTCAGTGAGGCTTCTGATATACTGAGAAAATGCTCAGCCAATTCACTGGTTATACTTGATGAGCTTGGGAGAGGCACCAGCACACATGATGGCGTAGCAATTGCTTATGCAACACTTCAATATCTCCTGGAGCACAAAAAATGCATGGTTCTATTTGTTACTCATTACCCTGAAATTGTCAGTATCAAGAATAAGTTTCCAGGCTCTGTGGGACCATACCATGTGTCATATTTGACATCCCAAAGAGATGTGAATGGGGATTTCAAGTCAAATGAGAAGATGGATCACATTAATGGTGAGGACATCACCTACCTATACAAACTTGCACCAGGTGTTTCTGGGAGAAGTTTTGGTTTTAAAGTTGCTCAGCTTGCACAA.........................................................................................................................................................................................................................................................CTGCCGGTCACATGTATTCAGCAAGCCATTGTAATAGCTGCAAAACTGGAAGCAGCAGTCTGTAACTACACTGAACAACAATTTCGAAGGAGCTGTTCTCTAAGCCATAGGCAAGATGGCTGTAAAAATGAACCCACAGAGGATGTCCTAGAATCAGATTCCTTGTCTGCTGGAATAGTTGAAGGCTTAGACGACATCAGTGAGCTTTACAGGGAGTTGTTTCTGAACCTTAACTATGCATATCTTGAAGAACATGGTAATGACAGGAGACTCCAGTTTCTAATGCAAGCTAGAAAGCTTGCAGCTCAGTTAATAAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGCTGGTAATGAAACTGCCTGCCTGCTTGTACAGTAGGACACCACTATTTTGATCCAAATATAGATGGTGAATATCTTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>141</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1528" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1528" e_stop="1376"/>
            <exon e_start="1279" e_stop="1007"/>
            <exon e_start="904" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1528" e_stop="1376" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.890">
            <gDNA_intron_boundary i_start="1375" i_stop="1280" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1279" e_stop="1007" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.727" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1006" i_stop="905" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="904" e_stop="1" e_length="904"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1528" stop="1376"/>
              <exon start="1279" stop="1007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1523" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1522" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1519" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1518" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1497" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1487" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1487" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1487" stop="1376"/>
              <exon start="1279" stop="1007"/>
              <exon start="904" stop="758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="705" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="538" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTCCCATCTCTCTTTGTTCCTACCCACCCCACACCCACTCACCTCTATGTGGCGCCGGAAACTTCCAGAATCACCGAAAATTCCGACGGTCGTCCTCTCTGTAGTTTTGGCTCCAGATCTGTGAGAATAGCTTCATCGATCTTCACTCAA : TTCGTCAGGTAATAAGAAGAGATGACTCCACAGCCAATAGACCGGAACAAAGGAGAGACGACAGCCGGTGAAACGCCGAGGTCTGTGCCGACACCGTTTTTAACAAAGACCTACCAGCTCATCGAGGATCAATCTATTGACGATGTGATCTCTTGGAATGAAGACGGATCTACTTTTATAGTGTGGAATCCAACGGAGTTCGCTAGGGATTTGCTTCCTAAATATTTTAAACATAATAATTTTTCTAGCTTCGTTAGGCAGCTCAACACCTAT : GGATTTCGGAAAGTAGTACCTGATCGATGGGAATTCGCAAACGACAGCTTCCGGAGAGGTGAGAGAAGTCAGTTAGTTGATATCCAGCGTCGAAAGGTTGCCACGCCGATTGCTACTCCTTCCGCAGCTGCAACAGCGGTGGCGATTGTGGCTTCTCCGCCTCAGCCTCCACCTCCACCTCCGTCTCCGTCTCCGCCTCCGCCTCCGCCTGCTCAACCACCGGTGGCTGTATCTACCTCTGATTCCTGTGAAGAGCAAGTTCTATCGTCGAACTCATCTGCAGGTAGCACAGCGGAGCTTTTAGGAGAAAACGAACGGTTAAGATTGGAGAATTTACAGCTCAGCAAAGAGTTGAACCAAATGAAGAAGCTCTGCGGCAATATATATGGTATGATGTCGACTTACGCACATCCTTCGAGCAGCGGTAATCAATCGGCGGAGAGTAGTTCGCCTTCGTTGAAGCCACTGGATCTGTTAGGGACGGAACGGTCCGTAGGTGAATCTCAGGTGAAGGCGGTAGAGGACCGGGAGAGCCATGAGGTACCGGAGGAAGCGCAGGCGAGATTATTCGGTTTCTCGATAGGCATGAAGCGTGTTAGGGAAGGGGAACAAGCAATGATGGAGCATTGTCATGATTTACGGCTGCGGCAACCTGGAACAACGGATGTTAAAGTAGAACCGTCTGATCAGGAAAGTAACGGTGAAAGTGAAGAGAGATCGTGGCTGCTACATTGCGGTGGAAGAAATCAAAGGACTTGTAATTGATAGTTTGTTGGTGTGATGAACCTTAATTAGATTTAGATTAGAGATTAGCTGTGATGATAATCGAGATTATATTAGAGATTAGCTGATCAAAATCGAAAGAGGTGATAATTACGTGACGGACTAAATCTTGAAGAAGCTT</gDNA_template>
            <first_frame> I  F  P  S  L  F  V  P  T  H  P  T  P  T  H  L  Y  V  A  P  E  T  S  R  I  T  E  N  S  D  G  R  P  L  C  S  F  G  S  R  S  V  R  I  A  S  S  I  F  T  Q  :  F  V  R  *  *  E  E  M  T  P  Q  P  I  D  R  N  K  G  E  T  T  A  G  E  T  P  R  S  V  P  T  P  F  L  T  K  T  Y  Q  L  I  E  D  Q  S  I  D  D  V  I  S  W  N  E  D  G  S  T  F  I  V  W  N  P  T  E  F  A  R  D  L  L  P  K  Y  F  K  H  N  N  F  S  S  F  V  R  Q  L  N  T  Y  :  G  F  R  K  V  V  P  D  R  W  E  F  A  N  D  S  F  R  R  G  E  R  S  Q  L  V  D  I  Q  R  R  K  V  A  T  P  I  A  T  P  S  A  A  A  T  A  V  A  I  V  A  S  P  P  Q  P  P  P  P  P  P  S  P  S  P  P  P  P  P  P  A  Q  P  P  V  A  V  S  T  S  D  S  C  E  E  Q  V  L  S  S  N  S  S  A  G  S  T  A  E  L  L  G  E  N  E  R  L  R  L  E  N  L  Q  L  S  K  E  L  N  Q  M  K  K  L  C  G  N  I  Y  G  M  M  S  T  Y  A  H  P  S  S  S  G  N  Q  S  A  E  S  S  S  P  S  L  K  P  L  D  L  L  G  T  E  R  S  V  G  E  S  Q  V  K  A  V  E  D  R  E  S  H  E  V  P  E  E  A  Q  A  R  L  F  G  F  S  I  G  M  K  R  V  R  E  G  E  Q  A  M  M  E  H  C  H  D  L  R  L  R  Q  P  G  T  T  D  V  K  V  E  P  S  D  Q  E  S  N  G  E  S  E  E  R  S  W  L  L  H  C  G  G  R  N  Q  R  T  C  N  *  *  F  V  G  V  M  N  L  N  *  I  *  I  R  D  *  L  *  *  *  S  R  L  Y  *  R  L  A  D  Q  N  R  K  R  *  *  L  R  D  G  L  N  L  E  E  A  </first_frame>
            <second_frame>  S  S  H  L  S  L  F  L  P  T  P  H  P  L  T  S  M  W  R  R  K  L  P  E  S  P  K  I  P  T  V  V  L  S  V  V  L  A  P  D  L  *  E  *  L  H  R  S  S  L  N :   S  S  G  N  K  K  R  *  L  H  S  Q  *  T  G  T  K  E  R  R  Q  P  V  K  R  R  G  L  C  R  H  R  F  *  Q  R  P  T  S  S  S  R  I  N  L  L  T  M  *  S  L  G  M  K  T  D  L  L  L  *  C  G  I  Q  R  S  S  L  G  I  C  F  L  N  I  L  N  I  I  I  F  L  A  S  L  G  S  S  T  P  M :   D  F  G  K  *  Y  L  I  D  G  N  S  Q  T  T  A  S  G  E  V  R  E  V  S  *  L  I  S  S  V  E  R  L  P  R  R  L  L  L  L  P  Q  L  Q  Q  R  W  R  L  W  L  L  R  L  S  L  H  L  H  L  R  L  R  L  R  L  R  L  R  L  L  N  H  R  W  L  Y  L  P  L  I  P  V  K  S  K  F  Y  R  R  T  H  L  Q  V  A  Q  R  S  F  *  E  K  T  N  G  *  D  W  R  I  Y  S  S  A  K  S  *  T  K  *  R  S  S  A  A  I  Y  M  V  *  C  R  L  T  H  I  L  R  A  A  V  I  N  R  R  R  V  V  R  L  R  *  S  H  W  I  C  *  G  R  N  G  P  *  V  N  L  R  *  R  R  *  R  T  G  R  A  M  R  Y  R  R  K  R  R  R  D  Y  S  V  S  R  *  A  *  S  V  L  G  K  G  N  K  Q  *  W  S  I  V  M  I  Y  G  C  G  N  L  E  Q  R  M  L  K  *  N  R  L  I  R  K  V  T  V  K  V  K  R  D  R  G  C  Y  I  A  V  E  E  I  K  G  L  V  I  D  S  L  L  V  *  *  T  L  I  R  F  R  L  E  I  S  C  D  D  N  R  D  Y  I  R  D  *  L  I  K  I  E  R  G  D  N  Y  V  T  D  *  I  L  K  K  L </second_frame>
            <third_frame>   L  P  I  S  L  C  S  Y  P  P  H  T  H  S  P  L  C  G  A  G  N  F  Q  N  H  R  K  F  R  R  S  S  S  L  *  F  W  L  Q  I  C  E  N  S  F  I  D  L  H  S   : I  R  Q  V  I  R  R  D  D  S  T  A  N  R  P  E  Q  R  R  D  D  S  R  *  N  A  E  V  C  A  D  T  V  F  N  K  D  L  P  A  H  R  G  S  I  Y  *  R  C  D  L  L  E  *  R  R  I  Y  F  Y  S  V  E  S  N  G  V  R  *  G  F  A  S  *  I  F  *  T  *  *  F  F  *  L  R  *  A  A  Q  H  L   : W  I  S  E  S  S  T  *  S  M  G  I  R  K  R  Q  L  P  E  R  *  E  K  S  V  S  *  Y  P  A  S  K  G  C  H  A  D  C  Y  S  F  R  S  C  N  S  G  G  D  C  G  F  S  A  S  A  S  T  S  T  S  V  S  V  S  A  S  A  S  A  C  S  T  T  G  G  C  I  Y  L  *  F  L  *  R  A  S  S  I  V  E  L  I  C  R  *  H  S  G  A  F  R  R  K  R  T  V  K  I  G  E  F  T  A  Q  Q  R  V  E  P  N  E  E  A  L  R  Q  Y  I  W  Y  D  V  D  L  R  T  S  F  E  Q  R  *  S  I  G  G  E  *  F  A  F  V  E  A  T  G  S  V  R  D  G  T  V  R  R  *  I  S  G  E  G  G  R  G  P  G  E  P  *  G  T  G  G  S  A  G  E  I  I  R  F  L  D  R  H  E  A  C  *  G  R  G  T  S  N  D  G  A  L  S  *  F  T  A  A  A  T  W  N  N  G  C  *  S  R  T  V  *  S  G  K  *  R  *  K  *  R  E  I  V  A  A  T  L  R  W  K  K  S  K  D  L  *  L  I  V  C  W  C  D  E  P  *  L  D  L  D  *  R  L  A  V  M  I  I  E  I  I  L  E  I  S  *  S  K  S  K  E  V  I  I  T  *  R  T  K  S  *  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1264" stop="1007"/>
                    <exon start="904" stop="140"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEMTPQPIDRNKGETTAGETPRSVPTPFLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDSFRRGERSQLVDIQRRKVATPIATPSAAATAVAIVASPPQPPPPPPSPSPPPPPPAQPPVAVSTSDSCEEQVLSSNSSAGSTAELLGENERLRLENLQLSKELNQMKKLCGNIYGMMSTYAHPSSSGNQSAESSSPSLKPLDLLGTERSVGESQVKAVEDRESHEVPEEAQARLFGFSIGMKRVREGEQAMMEHCHDLRLRQPGTTDVKVEPSDQESNGESEERSWLLHCGGRNQRTCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="913" PGL_stop="1778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="913" e_stop="1778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="913" e_stop="1778" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="913" stop="1605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="914" stop="1370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1043" stop="1778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAGAAAAGCTAAACTTAACCATCGACTACAAACAATGATTTTCTATCACTCTCAGGTCAAATCAAATGATTTCAGATAAGAAGAAACTTACATAGGTGTTGAGCTGCCTAACGAAGCTAGAAAAATTATTATGTTTAAAATATTTAGGAAGCAAATCCCTAGCGAACTCCGTTGGATTCCACACTATAAAAGTAGATCCGTCTTCATTCCAAGAGATCACATCGTCAATAGATTGATCCTCGATGAGCTGGTAGGTCTTTGTTAAAAACGGTGTCGGCACAGACCTCGGCGTTTCACCGGCTGTCGTCTCTCCTTTGTTCCGGTCTATTGGCTGTGGAGTCATCTCTTCTTATTACCTGACGAACTAATTAAGTTCGTATTGAATCAACTCATCAAAAAACCATTTTCTAGCTAATATAATACATACAGCAAAAATAATAGTAACACCAAAACTACGTACTTGAGTGAAGATCGATGAAGCTATTCTCACAGATCTGGAGCCAAAACTACAGAGAGGACGACCGTCGGAATTTTCGGTGATTCTGGAAGTTTCCGGCGCCACATAGAGGTGAGTGGGTGTGGGGTGGGTAGGAACAAAGAGAGATGGGAAGATAATTGGAAAATTCGAAAAAGAAGGAATAAAGATAAGGAGAAAATATTAATAAAAGAAAAAAGCGAGAGTACAAAGAAACAAGCAAAAAGCTACGTTAAGCACAGCTTCCCAAAGTAGAATTAAATTAAAAATAGAACTAAAGTCGTAGAGATACTTATTGCCTTTCGGGAAACTTCTTTTACGTGTTACCTTATGAGAGGCTTTACGCACCCACAGATGAATAGGCGATGTATTTGCGCTACTCAAAATT</gDNA_template>
            <first_frame> P  K  K  S  *  T  *  P  S  T  T  N  N  D  F  L  S  L  S  G  Q  I  K  *  F  Q  I  R  R  N  L  H  R  C  *  A  A  *  R  S  *  K  N  Y  Y  V  *  N  I  *  E  A  N  P  *  R  T  P  L  D  S  T  L  *  K  *  I  R  L  H  S  K  R  S  H  R  Q  *  I  D  P  R  *  A  G  R  S  L  L  K  T  V  S  A  Q  T  S  A  F  H  R  L  S  S  L  L  C  S  G  L  L  A  V  E  S  S  L  L  I  T  *  R  T  N  *  V  R  I  E  S  T  H  Q  K  T  I  F  *  L  I  *  Y  I  Q  Q  K  *  *  *  H  Q  N  Y  V  L  E  *  R  S  M  K  L  F  S  Q  I  W  S  Q  N  Y  R  E  D  D  R  R  N  F  R  *  F  W  K  F  P  A  P  H  R  G  E  W  V  W  G  G  *  E  Q  R  E  M  G  R  *  L  E  N  S  K  K  K  E  *  R  *  G  E  N  I  N  K  R  K  K  R  E  Y  K  E  T  S  K  K  L  R  *  A  Q  L  P  K  V  E  L  N  *  K  *  N  *  S  R  R  D  T  Y  C  L  S  G  N  F  F  Y  V  L  P  Y  E  R  L  Y  A  P  T  D  E  *  A  M  Y  L  R  Y  S  K   </first_frame>
            <second_frame>  Q  R  K  A  K  L  N  H  R  L  Q  T  M  I  F  Y  H  S  Q  V  K  S  N  D  F  R  *  E  E  T  Y  I  G  V  E  L  P  N  E  A  R  K  I  I  M  F  K  I  F  R  K  Q  I  P  S  E  L  R  W  I  P  H  Y  K  S  R  S  V  F  I  P  R  D  H  I  V  N  R  L  I  L  D  E  L  V  G  L  C  *  K  R  C  R  H  R  P  R  R  F  T  G  C  R  L  S  F  V  P  V  Y  W  L  W  S  H  L  F  L  L  P  D  E  L  I  K  F  V  L  N  Q  L  I  K  K  P  F  S  S  *  Y  N  T  Y  S  K  N  N  S  N  T  K  T  T  Y  L  S  E  D  R  *  S  Y  S  H  R  S  G  A  K  T  T  E  R  T  T  V  G  I  F  G  D  S  G  S  F  R  R  H  I  E  V  S  G  C  G  V  G  R  N  K  E  R  W  E  D  N  W  K  I  R  K  R  R  N  K  D  K  E  K  I  L  I  K  E  K  S  E  S  T  K  K  Q  A  K  S  Y  V  K  H  S  F  P  K  *  N  *  I  K  N  R  T  K  V  V  E  I  L  I  A  F  R  E  T  S  F  T  C  Y  L  M  R  G  F  T  H  P  Q  M  N  R  R  C  I  C  A  T  Q  N  </second_frame>
            <third_frame>   K  E  K  L  N  L  T  I  D  Y  K  Q  *  F  S  I  T  L  R  S  N  Q  M  I  S  D  K  K  K  L  T  *  V  L  S  C  L  T  K  L  E  K  L  L  C  L  K  Y  L  G  S  K  S  L  A  N  S  V  G  F  H  T  I  K  V  D  P  S  S  F  Q  E  I  T  S  S  I  D  *  S  S  M  S  W  *  V  F  V  K  N  G  V  G  T  D  L  G  V  S  P  A  V  V  S  P  L  F  R  S  I  G  C  G  V  I  S  S  Y  Y  L  T  N  *  L  S  S  Y  *  I  N  S  S  K  N  H  F  L  A  N  I  I  H  T  A  K  I  I  V  T  P  K  L  R  T  *  V  K  I  D  E  A  I  L  T  D  L  E  P  K  L  Q  R  G  R  P  S  E  F  S  V  I  L  E  V  S  G  A  T  *  R  *  V  G  V  G  W  V  G  T  K  R  D  G  K  I  I  G  K  F  E  K  E  G  I  K  I  R  R  K  Y  *  *  K  K  K  A  R  V  Q  R  N  K  Q  K  A  T  L  S  T  A  S  Q  S  R  I  K  L  K  I  E  L  K  S  *  R  Y  L  L  P  F  G  K  L  L  L  R  V  T  L  *  E  A  L  R  T  H  R  *  I  G  D  V  F  A  L  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1394" stop="1645"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSHRSGAKTTERTTVGIFGDSGSFRRHIEVSGCGVGRNKERWEDNWKIRKRRNKDKEKILIKEKSESTKKQAKSYVKHSFPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10596" PGL_stop="9640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10596" e_stop="9640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10596" e_stop="9640" e_length="957"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10596" stop="9896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10595" stop="10070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10445" stop="9640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTGTTTTTTGCAATTTTCATGGGCTGTGTTTCATGTTTTTTGTATATGCCAGCAGTGAGAATTGCTCATGCCTTTTGGCTTGGAACTGATCAGCTTCGTTGTAATTTGCCTATTGTTTCGTGTGGATGGTTTGCGCGATTGCTTCTTCATGCTAACTATTTGGTCATGGTTTTGACATCAATGCTTTGGGTGAAACCGTTTACTGACCTATTACTTATTGATCAAAATAAGGGGGCTCATCAAAATTCAAGAATTGAAAATGCTACAAAGTTGGTTGGAAATGTGGGTATGAAGAAGTCGGAATTCGATAGCTTTAGGCTATGGTGTTTGGTGGTTTCGGGCTTATTGCAGATTGTATCGTTGCGATCAAACGTGCAGATGTACTTGAATGAAGCAGTATTGTGTTGGTATCAGAGACTGCATGCAAGCAAAGTTCCTGACTTAGCTTATAGTAGGGCCAAGGTGTTCCTGCACAATCACTTTGTATGCCTTGTGGTTCTGCAGTTTTTTTTGCCTGCATCAATGGTACTTATCTTCCTTGGCTTGTCTCAACTTGGTGGCGATTTGCTTACCAATTACGAAGGGGTATGTAGCGTATTGCCTTGTTCTCTGCTAGACAAAGAGGTGGCTTTGTTTATGGCCTGGTGGGTTCTCTTTGTTTGGACAATATATAGTTCAGTCACCCTTGCTCTATTTAGACAGGGAATCTTGTGTGTATCTTGATCTATTGTTTACACGACTCACCATCAGGAAGCCGAGGTCTCTCATTTTATGAGCTTTTCCACAAGTGTGTCACGATGTAACTATACAACCCTTCAACTGATCTTTTTTTTTCCCTCAAAATATTCCTTCCACTAAGAGTTTCAATTTTGTGACACTTCTGAAATTTTTATGGAATATTTTGTGATAAACTTTTGAATGTTTTTATAGAATACTATTTTGTTTTCTCCTCTC</gDNA_template>
            <first_frame> K  L  F  F  A  I  F  M  G  C  V  S  C  F  L  Y  M  P  A  V  R  I  A  H  A  F  W  L  G  T  D  Q  L  R  C  N  L  P  I  V  S  C  G  W  F  A  R  L  L  L  H  A  N  Y  L  V  M  V  L  T  S  M  L  W  V  K  P  F  T  D  L  L  L  I  D  Q  N  K  G  A  H  Q  N  S  R  I  E  N  A  T  K  L  V  G  N  V  G  M  K  K  S  E  F  D  S  F  R  L  W  C  L  V  V  S  G  L  L  Q  I  V  S  L  R  S  N  V  Q  M  Y  L  N  E  A  V  L  C  W  Y  Q  R  L  H  A  S  K  V  P  D  L  A  Y  S  R  A  K  V  F  L  H  N  H  F  V  C  L  V  V  L  Q  F  F  L  P  A  S  M  V  L  I  F  L  G  L  S  Q  L  G  G  D  L  L  T  N  Y  E  G  V  C  S  V  L  P  C  S  L  L  D  K  E  V  A  L  F  M  A  W  W  V  L  F  V  W  T  I  Y  S  S  V  T  L  A  L  F  R  Q  G  I  L  C  V  S  *  S  I  V  Y  T  T  H  H  Q  E  A  E  V  S  H  F  M  S  F  S  T  S  V  S  R  C  N  Y  T  T  L  Q  L  I  F  F  F  P  S  K  Y  S  F  H  *  E  F  Q  F  C  D  T  S  E  I  F  M  E  Y  F  V  I  N  F  *  M  F  L  *  N  T  I  L  F  S  P  L </first_frame>
            <second_frame>  S  C  F  L  Q  F  S  W  A  V  F  H  V  F  C  I  C  Q  Q  *  E  L  L  M  P  F  G  L  E  L  I  S  F  V  V  I  C  L  L  F  R  V  D  G  L  R  D  C  F  F  M  L  T  I  W  S  W  F  *  H  Q  C  F  G  *  N  R  L  L  T  Y  Y  L  L  I  K  I  R  G  L  I  K  I  Q  E  L  K  M  L  Q  S  W  L  E  M  W  V  *  R  S  R  N  S  I  A  L  G  Y  G  V  W  W  F  R  A  Y  C  R  L  Y  R  C  D  Q  T  C  R  C  T  *  M  K  Q  Y  C  V  G  I  R  D  C  M  Q  A  K  F  L  T  *  L  I  V  G  P  R  C  S  C  T  I  T  L  Y  A  L  W  F  C  S  F  F  C  L  H  Q  W  Y  L  S  S  L  A  C  L  N  L  V  A  I  C  L  P  I  T  K  G  Y  V  A  Y  C  L  V  L  C  *  T  K  R  W  L  C  L  W  P  G  G  F  S  L  F  G  Q  Y  I  V  Q  S  P  L  L  Y  L  D  R  E  S  C  V  Y  L  D  L  L  F  T  R  L  T  I  R  K  P  R  S  L  I  L  *  A  F  P  Q  V  C  H  D  V  T  I  Q  P  F  N  *  S  F  F  F  P  Q  N  I  P  S  T  K  S  F  N  F  V  T  L  L  K  F  L  W  N  I  L  *  *  T  F  E  C  F  Y  R  I  L  F  C  F  L  L   </second_frame>
            <third_frame>   V  V  F  C  N  F  H  G  L  C  F  M  F  F  V  Y  A  S  S  E  N  C  S  C  L  L  A  W  N  *  S  A  S  L  *  F  A  Y  C  F  V  W  M  V  C  A  I  A  S  S  C  *  L  F  G  H  G  F  D  I  N  A  L  G  E  T  V  Y  *  P  I  T  Y  *  S  K  *  G  G  S  S  K  F  K  N  *  K  C  Y  K  V  G  W  K  C  G  Y  E  E  V  G  I  R  *  L  *  A  M  V  F  G  G  F  G  L  I  A  D  C  I  V  A  I  K  R  A  D  V  L  E  *  S  S  I  V  L  V  S  E  T  A  C  K  Q  S  S  *  L  S  L  *  *  G  Q  G  V  P  A  Q  S  L  C  M  P  C  G  S  A  V  F  F  A  C  I  N  G  T  Y  L  P  W  L  V  S  T  W  W  R  F  A  Y  Q  L  R  R  G  M  *  R  I  A  L  F  S  A  R  Q  R  G  G  F  V  Y  G  L  V  G  S  L  C  L  D  N  I  *  F  S  H  P  C  S  I  *  T  G  N  L  V  C  I  L  I  Y  C  L  H  D  S  P  S  G  S  R  G  L  S  F  Y  E  L  F  H  K  C  V  T  M  *  L  Y  N  P  S  T  D  L  F  F  S  L  K  I  F  L  P  L  R  V  S  I  L  *  H  F  *  N  F  Y  G  I  F  C  D  K  L  L  N  V  F  I  E  Y  Y  F  V  F  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10596" stop="9871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFFAIFMGCVSCFLYMPAVRIAHAFWLGTDQLRCNLPIVSCGWFARLLLHANYLVMVLTSMLWVKPFTDLLLIDQNKGAHQNSRIENATKLVGNVGMKKSEFDSFRLWCLVVSGLLQIVSLRSNVQMYLNEAVLCWYQRLHASKVPDLAYSRAKVFLHNHFVCLVVLQFFLPASMVLIFLGLSQLGGDLLTNYEGVCSVLPCSLLDKEVALFMAWWVLFVWTIYSSVTLALFRQGILCVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17875" PGL_stop="19749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17875" e_stop="18251"/>
            <exon e_start="19316" e_stop="19398"/>
            <exon e_start="19670" e_stop="19749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17875" e_stop="18251" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18252" i_stop="19315" i_length="1064"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19316" e_stop="19398" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19399" i_stop="19669" i_length="271"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19670" e_stop="19749" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17875" stop="18251"/>
              <exon start="19316" stop="19398"/>
              <exon start="19670" stop="19749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17889" stop="18251"/>
              <exon start="19316" stop="19398"/>
              <exon start="19670" stop="19748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAACAAAAAAGCGAAAAACACAGATCAACCCACCTGGTGGTCTTCCGGCAATACACCGGCCCGGAATTTCACATTTCCGACGGCAGCACCGGTCGGAGAACAATTACAGATCGACTCAGTTCATATATATATATATGGATCCGAAGAAGAAGGATTTTGAAGGAAAATACGAATCGTCGAGTAACAGTTTGTATTGGACTAATGAAAGGCATGTTCATTTTCTGAATTCAATTGAAGCTTCTTTTGTTCAAACTTTGCTGGAGAATAATAGTAACGCCGCCCCTATTCTTCCGCTCGACCGCCATTTGCCCGATAGTACAGATTCAACCCTTGATACTCCTAAAGAAAGACGACGCAGATTTTCTACCTCAG : ATATCAACATGAGCAGCGGAAGCAGAATAGATGTTGAGAAAAAAACTAGAAGAATGTCATCCATCATTTCCTCACAAGATCAG : GTGGTCCCACAATATAAGCATGGAAGAGGAGATAAGGATGCTGATGGTCACCCTAGTGTTCCTCTCAATTAAAAAAAAAA</gDNA_template>
            <first_frame> R  E  N  K  K  A  K  N  T  D  Q  P  T  W  W  S  S  G  N  T  P  A  R  N  F  T  F  P  T  A  A  P  V  G  E  Q  L  Q  I  D  S  V  H  I  Y  I  Y  G  S  E  E  E  G  F  *  R  K  I  R  I  V  E  *  Q  F  V  L  D  *  *  K  A  C  S  F  S  E  F  N  *  S  F  F  C  S  N  F  A  G  E  *  *  *  R  R  P  Y  S  S  A  R  P  P  F  A  R  *  Y  R  F  N  P  *  Y  S  *  R  K  T  T  Q  I  F  Y  L  R :   Y  Q  H  E  Q  R  K  Q  N  R  C  *  E  K  N  *  K  N  V  I  H  H  F  L  T  R  S   : G  G  P  T  I  *  A  W  K  R  R  *  G  C  *  W  S  P  *  C  S  S  Q  L  K  K  K </first_frame>
            <second_frame>  E  R  T  K  K  R  K  T  Q  I  N  P  P  G  G  L  P  A  I  H  R  P  G  I  S  H  F  R  R  Q  H  R  S  E  N  N  Y  R  S  T  Q  F  I  Y  I  Y  M  D  P  K  K  K  D  F  E  G  K  Y  E  S  S  S  N  S  L  Y  W  T  N  E  R  H  V  H  F  L  N  S  I  E  A  S  F  V  Q  T  L  L  E  N  N  S  N  A  A  P  I  L  P  L  D  R  H  L  P  D  S  T  D  S  T  L  D  T  P  K  E  R  R  R  R  F  S  T  S   : D  I  N  M  S  S  G  S  R  I  D  V  E  K  K  T  R  R  M  S  S  I  I  S  S  Q  D  Q  :  V  V  P  Q  Y  K  H  G  R  G  D  K  D  A  D  G  H  P  S  V  P  L  N  *  K  K   </second_frame>
            <third_frame>   R  E  Q  K  S  E  K  H  R  S  T  H  L  V  V  F  R  Q  Y  T  G  P  E  F  H  I  S  D  G  S  T  G  R  R  T  I  T  D  R  L  S  S  Y  I  Y  I  W  I  R  R  R  R  I  L  K  E  N  T  N  R  R  V  T  V  C  I  G  L  M  K  G  M  F  I  F  *  I  Q  L  K  L  L  L  F  K  L  C  W  R  I  I  V  T  P  P  L  F  F  R  S  T  A  I  C  P  I  V  Q  I  Q  P  L  I  L  L  K  K  D  D  A  D  F  L  P  Q  :  I  S  T  *  A  A  E  A  E  *  M  L  R  K  K  L  E  E  C  H  P  S  F  P  H  K  I  R :   W  S  H  N  I  S  M  E  E  E  I  R  M  L  M  V  T  L  V  F  L  S  I  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17876" stop="18251"/>
                    <exon start="19316" stop="19398"/>
                    <exon start="19670" stop="19741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTKKRKTQINPPGGLPAIHRPGISHFRRQHRSENNYRSTQFIYIYMDPKKKDFEGKYESSSNSLYWTNERHVHFLNSIEASFVQTLLENNSNAAPILPLDRHLPDSTDSTLDTPKERRRRFSTSDINMSSGSRIDVEKKTRRMSSIISSQDQVVPQYKHGRGDKDADGHPSVPLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24016" PGL_stop="23209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24016" e_stop="23209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="24016" e_stop="23209" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24016" stop="23470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23990" stop="23227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23862" stop="23302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23862" stop="23302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTGAAAAGTAACGATAGTGTAAAACTCTCTTTTTTCGCGTGGAGATAAAGAGACGTTAGCCACAACTTTGGAAGAGAATTAGCGTCAAATGGCCGAATCGAACCCTAGAGAAGAATCAGCTCTACTAGCTTCAAAAATATGCGATCAGATAAGCTCCGTCTTCTCCACAAATTCCCCAAATCCAGCAGCACTAGATGTGCTGGTGCAAGAAATCGCAGATGCTGCTAACCGCAACGGCCGGGTATTCGTATACGGTGTGGGCCGTGAAGGATTGATGCTGAAAGCCCTATCGATGAGGCTTTTCCATCTCGGTTTATCATCACACTGCGTCTTCGACATGAACACTCCTCCAATTGGTCCCTCCGACCTCCTAATCGCTTCCGCCGGTCCAGGTGGTTTCTCCACCGTCGATGCGATCTCCGGAGTGGCCAAATCTAGCGGCGCTCGTGTACTGTTGTTGACAGCTCAGCCTCATTCGGGATCTTCAATGAAGTACGCGAGTGTTGTTGCTTATATTCCGGCTCAGACCATGGCTGATGATGATGCCGGTGACGGAGAGAAGGAACGGCCGCTGCTTCCGATGGGGAGTGTGTATGAAGGAGCGATGTTTGTGCTGTTTGAGATGGTTGTTTTCAAGTTGGGTGAAATTTTGAAGCAGAGTCCTGAAGCTGTGAGAGCACGCCATACAAATCTGGAGTAAGCACAAGTTATAAACATACATTTCCGTACTGTAAATCTCCGTGCTTCATGCTTAATCTGTTTGATTATACTTACTGAATTCAGTACTACGATGAACATAAATT</gDNA_template>
            <first_frame> Y  F  *  K  V  T  I  V  *  N  S  L  F  S  R  G  D  K  E  T  L  A  T  T  L  E  E  N  *  R  Q  M  A  E  S  N  P  R  E  E  S  A  L  L  A  S  K  I  C  D  Q  I  S  S  V  F  S  T  N  S  P  N  P  A  A  L  D  V  L  V  Q  E  I  A  D  A  A  N  R  N  G  R  V  F  V  Y  G  V  G  R  E  G  L  M  L  K  A  L  S  M  R  L  F  H  L  G  L  S  S  H  C  V  F  D  M  N  T  P  P  I  G  P  S  D  L  L  I  A  S  A  G  P  G  G  F  S  T  V  D  A  I  S  G  V  A  K  S  S  G  A  R  V  L  L  L  T  A  Q  P  H  S  G  S  S  M  K  Y  A  S  V  V  A  Y  I  P  A  Q  T  M  A  D  D  D  A  G  D  G  E  K  E  R  P  L  L  P  M  G  S  V  Y  E  G  A  M  F  V  L  F  E  M  V  V  F  K  L  G  E  I  L  K  Q  S  P  E  A  V  R  A  R  H  T  N  L  E  *  A  Q  V  I  N  I  H  F  R  T  V  N  L  R  A  S  C  L  I  C  L  I  I  L  T  E  F  S  T  T  M  N  I  N  </first_frame>
            <second_frame>  I  F  E  K  *  R  *  C  K  T  L  F  F  R  V  E  I  K  R  R  *  P  Q  L  W  K  R  I  S  V  K  W  P  N  R  T  L  E  K  N  Q  L  Y  *  L  Q  K  Y  A  I  R  *  A  P  S  S  P  Q  I  P  Q  I  Q  Q  H  *  M  C  W  C  K  K  S  Q  M  L  L  T  A  T  A  G  Y  S  Y  T  V  W  A  V  K  D  *  C  *  K  P  Y  R  *  G  F  S  I  S  V  Y  H  H  T  A  S  S  T  *  T  L  L  Q  L  V  P  P  T  S  *  S  L  P  P  V  Q  V  V  S  P  P  S  M  R  S  P  E  W  P  N  L  A  A  L  V  Y  C  C  *  Q  L  S  L  I  R  D  L  Q  *  S  T  R  V  L  L  L  I  F  R  L  R  P  W  L  M  M  M  P  V  T  E  R  R  N  G  R  C  F  R  W  G  V  C  M  K  E  R  C  L  C  C  L  R  W  L  F  S  S  W  V  K  F  *  S  R  V  L  K  L  *  E  H  A  I  Q  I  W  S  K  H  K  L  *  T  Y  I  S  V  L  *  I  S  V  L  H  A  *  S  V  *  L  Y  L  L  N  S  V  L  R  *  T  *  I </second_frame>
            <third_frame>   F  L  K  S  N  D  S  V  K  L  S  F  F  A  W  R  *  R  D  V  S  H  N  F  G  R  E  L  A  S  N  G  R  I  E  P  *  R  R  I  S  S  T  S  F  K  N  M  R  S  D  K  L  R  L  L  H  K  F  P  K  S  S  S  T  R  C  A  G  A  R  N  R  R  C  C  *  P  Q  R  P  G  I  R  I  R  C  G  P  *  R  I  D  A  E  S  P  I  D  E  A  F  P  S  R  F  I  I  T  L  R  L  R  H  E  H  S  S  N  W  S  L  R  P  P  N  R  F  R  R  S  R  W  F  L  H  R  R  C  D  L  R  S  G  Q  I  *  R  R  S  C  T  V  V  D  S  S  A  S  F  G  I  F  N  E  V  R  E  C  C  C  L  Y  S  G  S  D  H  G  *  *  *  C  R  *  R  R  E  G  T  A  A  A  S  D  G  E  C  V  *  R  S  D  V  C  A  V  *  D  G  C  F  Q  V  G  *  N  F  E  A  E  S  *  S  C  E  S  T  P  Y  K  S  G  V  S  T  S  Y  K  H  T  F  P  Y  C  K  S  P  C  F  M  L  N  L  F  D  Y  T  Y  *  I  Q  Y  Y  D  E  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23929" stop="23312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQMAESNPREESALLASKICDQISSVFSTNSPNPAALDVLVQEIADAANRNGRVFVYGVGREGLMLKALSMRLFHLGLSSHCVFDMNTPPIGPSDLLIASAGPGGFSTVDAISGVAKSSGARVLLLTAQPHSGSSMKYASVVAYIPAQTMADDDAGDGEKERPLLPMGSVYEGAMFVLFEMVVFKLGEILKQSPEAVRARHTNLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29513" PGL_stop="24147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29513" e_stop="29472"/>
            <exon e_start="28984" e_stop="28930"/>
            <exon e_start="28507" e_stop="28392"/>
            <exon e_start="25430" e_stop="25257"/>
            <exon e_start="24589" e_stop="24147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29513" e_stop="29472" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29471" i_stop="28985" i_length="487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28984" e_stop="28930" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.922">
            <gDNA_intron_boundary i_start="28929" i_stop="28508" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28507" e_stop="28392" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.935">
            <gDNA_intron_boundary i_start="28391" i_stop="25431" i_length="2961"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25430" e_stop="25257" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24589" e_stop="24147" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29513" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29503" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29503" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29502" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29502" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29502" stop="29472"/>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28984" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28971" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28930"/>
              <exon start="28507" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28415" stop="28392"/>
              <exon start="25430" stop="25257"/>
              <exon start="24589" stop="24153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24535" stop="24147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAATGGGCTTCATGAGATCTGTTCGTCTCTTTTATGTAT : GGTAACCAGTTTAACTGCAACTGCTCGAAGGATTGAGTTACATTGAGAAAATGAA : AAGAGGACATGTAAAGTGGGATGAGGCAAATTTGGGAGAAATTGAGGCAAATAAACCGGTGAGGCAGAAAATTACTGAACCAAAGACACCATATCACCGCATGATTGATGATGATG : GTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG : ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</gDNA_template>
            <first_frame> S  Q  W  A  S  *  D  L  F  V  S  F  M  Y  :  G  N  Q  F  N  C  N  C  S  K  D  *  V  T  L  R  K  *   : K  E  D  M  *  S  G  M  R  Q  I  W  E  K  L  R  Q  I  N  R  *  G  R  K  L  L  N  Q  R  H  H  I  T  A  *  L  M  M  M  :  V  L  Y  L  L  N  G  V  V  L  R  K  A  M  V  M  Q  Y  M  Q  K  P  Y  A  V  H  *  M  R  W  L  L  P  V  R  I  N  S  D  G  L  A  G  R  H  L  R  M  K  P  M  S  W  T  K  M  M  Q  :  I  L  V  Q  G  R  L  K  T  S  R  T  T  D  E  H  I  M  M  S  I  G  E  S  K  N  S  V  K  R  A  K  K  H  Q  T  M  R  I  W  W  E  M  M  E  G  L  I  H  L  H  H  *  V  L  L  L  R  T  *  R  L  R  K  V  A  W  T  L  L  N  S  T  P  P  P  Q  A  L  E  L  R  S  N  Q  M  N  I  V  D  F  I  L  F  S  Y  S  L  C  L  Y  P  S  Y  F  C  L  *  L  V  Y  *  *  *  *  K  N  F  T  G  Y  N  S  S  R  F  F  L  R  I  S  V  L  T  H  M  F  I  I  *  S  S  R  I  I  *  Y   </first_frame>
            <second_frame>  H  N  G  L  H  E  I  C  S  S  L  L  C  M :   V  T  S  L  T  A  T  A  R  R  I  E  L  H  *  E  N  E  :  K  R  T  C  K  V  G  *  G  K  F  G  R  N  *  G  K  *  T  G  E  A  E  N  Y  *  T  K  D  T  I  S  P  H  D  *  *  *  W :   F  F  I  S  *  T  G  *  F  *  G  R  Q  W  *  C  S  T  C  R  S  H  T  Q  C  I  E  *  D  G  F  F  Q  *  E  *  I  P  T  V  W  L  D  V  I  *  G  *  N  R  C  H  G  P  R  *  C  R :   F  W  F  K  E  G  *  K  L  Q  G  P  Q  T  S  T  L  *  *  V  S  E  S  Q  R  T  P  *  K  G  R  R  S  I  R  R  *  G  S  G  G  K  *  W  K  V  *  F  I  F  I  I  E  C  C  C  *  G  H  R  D  *  G  R  *  H  G  H  F  *  I  V  L  L  L  P  K  P  W  S  S  D  Q  T  R  *  I  L  L  I  L  F  Y  F  H  T  P  F  V  Y  I  R  L  T  S  A  C  N  L  C  I  N  D  D  K  K  I  S  P  D  I  I  A  V  G  F  F  *  E  F  Q  C  *  L  T  C  L  L  Y  K  V  L  E  *  F  S  I  </second_frame>
            <third_frame>   T  M  G  F  M  R  S  V  R  L  F  Y  V   : W  *  P  V  *  L  Q  L  L  E  G  L  S  Y  I  E  K  M  K :   R  G  H  V  K  W  D  E  A  N  L  G  E  I  E  A  N  K  P  V  R  Q  K  I  T  E  P  K  T  P  Y  H  R  M  I  D  D  D   : G  S  L  S  P  K  R  G  S  F  E  E  G  N  G  D  A  V  H  A  E  A  I  R  S  A  L  N  E  M  A  S  S  S  K  N  K  F  R  R  S  G  W  T  S  S  E  D  E  T  D  V  M  D  Q  D  D  A   : D  S  G  S  R  K  V  K  N  F  K  D  H  R  R  A  H  Y  D  E  Y  R  R  V  K  E  L  R  K  K  G  E  E  A  S  D  D  E  D  L  V  G  N  D  G  R  S  D  S  S  S  S  L  S  A  A  V  K  D  I  E  I  K  E  G  S  M  D  T  S  K  *  Y  S  S  S  P  S  L  G  A  Q  I  K  P  D  E  Y  C  *  F  Y  F  I  F  I  L  P  L  F  I  S  V  L  L  L  P  V  T  C  V  L  M  M  I  K  K  F  H  R  I  *  *  Q  *  V  F  S  E  N  F  S  V  N  S  H  V  Y  Y  I  K  F  *  N  N  L  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28970" stop="28930"/>
                    <exon start="28507" stop="28392"/>
                    <exon start="25430" stop="25257"/>
                    <exon start="24589" stop="24375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQLLEGLSYIEKMKRGHVKWDEANLGEIEANKPVRQKITEPKTPYHRMIDDDGSLSPKRGSFEEGNGDAVHAEAIRSALNEMASSSKNKFRRSGWTSSEDETDVMDQDDADSGSRKVKNFKDHRRAHYDEYRRVKELRKKGEEASDDEDLVGNDGRSDSSSSLSAAVKDIEIKEGSMDTSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26022" e_stop="25257"/>
            <exon e_start="24589" e_stop="24147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="26022" e_stop="25257" e_length="766"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="25256" i_stop="24590" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="24589" e_stop="24147" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26022" stop="25536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25257"/>
              <exon start="24589" stop="24220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24535" stop="24147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGAGAAAATATAAAGTTGGGGTAACATATGTCTGGTATATTAAGAGGTAAGAGGAAACACAATGAAACAAATAAGCTATTGCATATGATTATGTAGCATTAGCAGTTGGGAAGTACCTCATTTAAAAGCTGATTTTTTAATTTTTCTTCATTCTCACACGCCTAAAAGGCTGTGTATCCATGTTCGGTGCCATGTCAACATTCTGGGTGTGAAGGCTATCAAATCGTCAAGTTCGGGGTACATCATTATGTGTCCTATATGACTAGTCTTGTGTCCACTGCATGAGTTGGATTCAAGGCAACTATGTTGTGTTTTAGTTGGTTTATAGTGTATCTTCATAGATCCACCATATGAAGTTCCTATGCTGATGTGGTACTTGCTCAACATGGTTATATTGAAGAACTCATGAAGGTTCCATGTAAAGTAGCTAATAGGTAAGCTCTATAGTCCTGCTTTTTGATGGACTGATCATTCATCTGAATTTAGAGAGGATTGTTTATATTGGTCTCTGAATGATAGCTTATATTGCCTAAACCTATGCAAGTTCATTTCTTCCTCTTGACTTTTCCTGATTTCGTTGATGTGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAG : ATTCTGGTTCAAGGAAGGTTAAAAACTTCAAGGACCACAGACGAGCACATTATGATGAGTATCGGAGAGTCAAAGAACTCCGTAAAAAGGGCGAAGAAGCATCAGACGATGAGGATCTGGTGGGAAATGATGGAAGGTCTGATTCATCTTCATCATTGAGTGCTGCTGTTAAGGACATAGAGATTAAGGAAGGTAGCATGGACACTTCTAAATAGTACTCCTCCTCCCCAAGCCTTGGAGCTCAGATCAAACCAGATGAATATTGTTGATTTTATTTTATTTTCATACTCCCTTTGTTTATATCCGTCTTACTTCTGCCTGTAACTTGTGTATTAATGATGATAAAAAAATTTCACCGGATATAATAGCAGTAGGTTTTTTCTGAGAATTTCAGTGTTAACTCACATGTTTATTATATAAAGTTCTAGAATAATTTAGTATTT</gDNA_template>
            <first_frame> N  R  E  N  I  K  L  G  *  H  M  S  G  I  L  R  G  K  R  K  H  N  E  T  N  K  L  L  H  M  I  M  *  H  *  Q  L  G  S  T  S  F  K  S  *  F  F  N  F  S  S  F  S  H  A  *  K  A  V  Y  P  C  S  V  P  C  Q  H  S  G  C  E  G  Y  Q  I  V  K  F  G  V  H  H  Y  V  S  Y  M  T  S  L  V  S  T  A  *  V  G  F  K  A  T  M  L  C  F  S  W  F  I  V  Y  L  H  R  S  T  I  *  S  S  Y  A  D  V  V  L  A  Q  H  G  Y  I  E  E  L  M  K  V  P  C  K  V  A  N  R  *  A  L  *  S  C  F  L  M  D  *  S  F  I  *  I  *  R  G  L  F  I  L  V  S  E  *  *  L  I  L  P  K  P  M  Q  V  H  F  F  L  L  T  F  P  D  F  V  D  V  I  G  S  L  S  P  K  R  G  S  F  E  E  G  N  G  D  A  V  H  A  E  A  I  R  S  A  L  N  E  M  A  S  S  S  K  N  K  F  R  R  S  G  W  T  S  S  E  D  E  T  D  V  M  D  Q  D  D  A   : D  S  G  S  R  K  V  K  N  F  K  D  H  R  R  A  H  Y  D  E  Y  R  R  V  K  E  L  R  K  K  G  E  E  A  S  D  D  E  D  L  V  G  N  D  G  R  S  D  S  S  S  S  L  S  A  A  V  K  D  I  E  I  K  E  G  S  M  D  T  S  K  *  Y  S  S  S  P  S  L  G  A  Q  I  K  P  D  E  Y  C  *  F  Y  F  I  F  I  L  P  L  F  I  S  V  L  L  L  P  V  T  C  V  L  M  M  I  K  K  F  H  R  I  *  *  Q  *  V  F  S  E  N  F  S  V  N  S  H  V  Y  Y  I  K  F  *  N  N  L  V  F </first_frame>
            <second_frame>  T  E  K  I  *  S  W  G  N  I  C  L  V  Y  *  E  V  R  G  N  T  M  K  Q  I  S  Y  C  I  *  L  C  S  I  S  S  W  E  V  P  H  L  K  A  D  F  L  I  F  L  H  S  H  T  P  K  R  L  C  I  H  V  R  C  H  V  N  I  L  G  V  K  A  I  K  S  S  S  S  G  Y  I  I  M  C  P  I  *  L  V  L  C  P  L  H  E  L  D  S  R  Q  L  C  C  V  L  V  G  L  *  C  I  F  I  D  P  P  Y  E  V  P  M  L  M  W  Y  L  L  N  M  V  I  L  K  N  S  *  R  F  H  V  K  *  L  I  G  K  L  Y  S  P  A  F  *  W  T  D  H  S  S  E  F  R  E  D  C  L  Y  W  S  L  N  D  S  L  Y  C  L  N  L  C  K  F  I  S  S  S  *  L  F  L  I  S  L  M  *  *  V  L  Y  L  L  N  G  V  V  L  R  K  A  M  V  M  Q  Y  M  Q  K  P  Y  A  V  H  *  M  R  W  L  L  P  V  R  I  N  S  D  G  L  A  G  R  H  L  R  M  K  P  M  S  W  T  K  M  M  Q  :  I  L  V  Q  G  R  L  K  T  S  R  T  T  D  E  H  I  M  M  S  I  G  E  S  K  N  S  V  K  R  A  K  K  H  Q  T  M  R  I  W  W  E  M  M  E  G  L  I  H  L  H  H  *  V  L  L  L  R  T  *  R  L  R  K  V  A  W  T  L  L  N  S  T  P  P  P  Q  A  L  E  L  R  S  N  Q  M  N  I  V  D  F  I  L  F  S  Y  S  L  C  L  Y  P  S  Y  F  C  L  *  L  V  Y  *  *  *  *  K  N  F  T  G  Y  N  S  S  R  F  F  L  R  I  S  V  L  T  H  M  F  I  I  *  S  S  R  I  I  *  Y   </second_frame>
            <third_frame>   Q  R  K  Y  K  V  G  V  T  Y  V  W  Y  I  K  R  *  E  E  T  Q  *  N  K  *  A  I  A  Y  D  Y  V  A  L  A  V  G  K  Y  L  I  *  K  L  I  F  *  F  F  F  I  L  T  R  L  K  G  C  V  S  M  F  G  A  M  S  T  F  W  V  *  R  L  S  N  R  Q  V  R  G  T  S  L  C  V  L  Y  D  *  S  C  V  H  C  M  S  W  I  Q  G  N  Y  V  V  F  *  L  V  Y  S  V  S  S  *  I  H  H  M  K  F  L  C  *  C  G  T  C  S  T  W  L  Y  *  R  T  H  E  G  S  M  *  S  S  *  *  V  S  S  I  V  L  L  F  D  G  L  I  I  H  L  N  L  E  R  I  V  Y  I  G  L  *  M  I  A  Y  I  A  *  T  Y  A  S  S  F  L  P  L  D  F  S  *  F  R  *  C  D  R  F  F  I  S  *  T  G  *  F  *  G  R  Q  W  *  C  S  T  C  R  S  H  T  Q  C  I  E  *  D  G  F  F  Q  *  E  *  I  P  T  V  W  L  D  V  I  *  G  *  N  R  C  H  G  P  R  *  C  R :   F  W  F  K  E  G  *  K  L  Q  G  P  Q  T  S  T  L  *  *  V  S  E  S  Q  R  T  P  *  K  G  R  R  S  I  R  R  *  G  S  G  G  K  *  W  K  V  *  F  I  F  I  I  E  C  C  C  *  G  H  R  D  *  G  R  *  H  G  H  F  *  I  V  L  L  L  P  K  P  W  S  S  D  Q  T  R  *  I  L  L  I  L  F  Y  F  H  T  P  F  V  Y  I  R  L  T  S  A  C  N  L  C  I  N  D  D  K  K  I  S  P  D  I  I  A  V  G  F  F  *  E  F  Q  C  *  L  T  C  L  L  Y  K  V  L  E  *  F  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25500" stop="25257"/>
                    <exon start="24589" stop="24375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILPKPMQVHFFLLTFPDFVDVIGSLSPKRGSFEEGNGDAVHAEAIRSALNEMASSSKNKFRRSGWTSSEDETDVMDQDDADSGSRKVKNFKDHRRAHYDEYRRVKELRKKGEEASDDEDLVGNDGRSDSSSSLSAAVKDIEIKEGSMDTSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26990" e_stop="26243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="26990" e_stop="26243" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26990" stop="26399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26988" stop="26243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26987" stop="26529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCTAAATGACAAAGTTAAGGGGTATATCAGACCTTTTTCCTATTATGAATTAAACTTATTTGGATCATTTGGTAGTACTTCTGTAAACATCCTAAAAGTTTCTTTACATGGTGCTTATACGATTTAAATGTTTTTGTGATGCTACTGGTGCATTTTATATTTCTGTTTAATTTGATTCTCTGAAGTTTCTTACATGGGGCCAAACCTTCTATAATCTTTTGGTGGTGGAATACAAGAGTTAATACCCTTATGTTTGGGTATTTGAAGTCTTAGGGTCTGCTTCTAATAATGGCACTGATGCTTAATTTATTATTATGTACGAGAAAATTTGATTATCCAAAAGCTCCAAAAATTTCTTGAATAATTGATCTTCCAAGTAAGATTTCCGCGACTTCATCAGACACAGACATTCTGGTATTTTTTCCTTTATTAGAGTTTAATGCTCGATAGTTTATACAGTTCCTATCCTGGCACTAAGAGAATTACTGGGCACTATAATGGCATTGCGTGATTTTATTTCTCTTTACTCCTCTGTAATTCCAGTTCTTTTGCATTTGCAAGGGTCTCATTTGATATGAGTTAAGACATGATGTAGTTACTCTATCTAATTGAATTTATTAAGCAGATAGGGTTTTCTCTGTTTCTTGTTCGACTTGGGCCACATTTATCAGAAAACATGTTTCGAACTCCATTTTTAGGTTAAATATTTGGATACAAATGATGGAGTTTCACCCATTTCTTTTTA</gDNA_template>
            <first_frame> S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  L  L  *  I  K  L  I  W  I  I  W  *  Y  F  C  K  H  P  K  S  F  F  T  W  C  L  Y  D  L  N  V  F  V  M  L  L  V  H  F  I  F  L  F  N  L  I  L  *  S  F  L  H  G  A  K  P  S  I  I  F  W  W  W  N  T  R  V  N  T  L  M  F  G  Y  L  K  S  *  G  L  L  L  I  M  A  L  M  L  N  L  L  L  C  T  R  K  F  D  Y  P  K  A  P  K  I  S  *  I  I  D  L  P  S  K  I  S  A  T  S  S  D  T  D  I  L  V  F  F  P  L  L  E  F  N  A  R  *  F  I  Q  F  L  S  W  H  *  E  N  Y  W  A  L  *  W  H  C  V  I  L  F  L  F  T  P  L  *  F  Q  F  F  C  I  C  K  G  L  I  *  Y  E  L  R  H  D  V  V  T  L  S  N  *  I  Y  *  A  D  R  V  F  S  V  S  C  S  T  W  A  T  F  I  R  K  H  V  S  N  S  I  F  R  L  N  I  W  I  Q  M  M  E  F  H  P  F  L  F  </first_frame>
            <second_frame>  A  L  N  D  K  V  K  G  Y  I  R  P  F  S  Y  Y  E  L  N  L  F  G  S  F  G  S  T  S  V  N  I  L  K  V  S  L  H  G  A  Y  T  I  *  M  F  L  *  C  Y  W  C  I  L  Y  F  C  L  I  *  F  S  E  V  S  Y  M  G  P  N  L  L  *  S  F  G  G  G  I  Q  E  L  I  P  L  C  L  G  I  *  S  L  R  V  C  F  *  *  W  H  *  C  L  I  Y  Y  Y  V  R  E  N  L  I  I  Q  K  L  Q  K  F  L  E  *  L  I  F  Q  V  R  F  P  R  L  H  Q  T  Q  T  F  W  Y  F  F  L  Y  *  S  L  M  L  D  S  L  Y  S  S  Y  P  G  T  K  R  I  T  G  H  Y  N  G  I  A  *  F  Y  F  S  L  L  L  C  N  S  S  S  F  A  F  A  R  V  S  F  D  M  S  *  D  M  M  *  L  L  Y  L  I  E  F  I  K  Q  I  G  F  S  L  F  L  V  R  L  G  P  H  L  S  E  N  M  F  R  T  P  F  L  G  *  I  F  G  Y  K  *  W  S  F  T  H  F  F  L </second_frame>
            <third_frame>   L  *  M  T  K  L  R  G  I  S  D  L  F  P  I  M  N  *  T  Y  L  D  H  L  V  V  L  L  *  T  S  *  K  F  L  Y  M  V  L  I  R  F  K  C  F  C  D  A  T  G  A  F  Y  I  S  V  *  F  D  S  L  K  F  L  T  W  G  Q  T  F  Y  N  L  L  V  V  E  Y  K  S  *  Y  P  Y  V  W  V  F  E  V  L  G  S  A  S  N  N  G  T  D  A  *  F  I  I  M  Y  E  K  I  *  L  S  K  S  S  K  N  F  L  N  N  *  S  S  K  *  D  F  R  D  F  I  R  H  R  H  S  G  I  F  S  F  I  R  V  *  C  S  I  V  Y  T  V  P  I  L  A  L  R  E  L  L  G  T  I  M  A  L  R  D  F  I  S  L  Y  S  S  V  I  P  V  L  L  H  L  Q  G  S  H  L  I  *  V  K  T  *  C  S  Y  S  I  *  L  N  L  L  S  R  *  G  F  L  C  F  L  F  D  L  G  H  I  Y  Q  K  T  C  F  E  L  H  F  *  V  K  Y  L  D  T  N  D  G  V  S  P  I  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0114P24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25436" e_stop="25013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25436" e_stop="25013" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25436" stop="25013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATAGGTTCTTTATCTCCTAAACGGGGTAGTTTTGAGGAAGGCAATGGTGATGCAGTACATGCAGAAGCCATACGCAGTGCATTGAATGAGATGGCTTCTTCCAGTAAGAATAAATTCCGACGGTCTGGCTGGACGTCATCTGAGGATGAAACCGATGTCATGGACCAAGATGATGCAGGTTTAGTTTGATCTTCAAGAGCTTAAAACCCAAACATATATTGGTTCATATTTCTAATTCTTATTGAATGTCTGGTGGAGTTCTTCAGGTCTACTATTTTCACATTTGTTTAATTTGTCATATGGTAAATATGCTTCTTGACATTCTTTTTGTGTCTTTTTTCGTCAACAATCTTCACTTCTCTGACAGTACGTGATCATATTGATAATCAAGGAGGGAAAAAAAAGCATTATGCTATTATATT</gDNA_template>
            <first_frame> *  *  V  L  Y  L  L  N  G  V  V  L  R  K  A  M  V  M  Q  Y  M  Q  K  P  Y  A  V  H  *  M  R  W  L  L  P  V  R  I  N  S  D  G  L  A  G  R  H  L  R  M  K  P  M  S  W  T  K  M  M  Q  V  *  F  D  L  Q  E  L  K  T  Q  T  Y  I  G  S  Y  F  *  F  L  L  N  V  W  W  S  S  S  G  L  L  F  S  H  L  F  N  L  S  Y  G  K  Y  A  S  *  H  S  F  C  V  F  F  R  Q  Q  S  S  L  L  *  Q  Y  V  I  I  L  I  I  K  E  G  K  K  S  I  M  L  L  Y  </first_frame>
            <second_frame>  D  R  F  F  I  S  *  T  G  *  F  *  G  R  Q  W  *  C  S  T  C  R  S  H  T  Q  C  I  E  *  D  G  F  F  Q  *  E  *  I  P  T  V  W  L  D  V  I  *  G  *  N  R  C  H  G  P  R  *  C  R  F  S  L  I  F  K  S  L  K  P  K  H  I  L  V  H  I  S  N  S  Y  *  M  S  G  G  V  L  Q  V  Y  Y  F  H  I  C  L  I  C  H  M  V  N  M  L  L  D  I  L  F  V  S  F  F  V  N  N  L  H  F  S  D  S  T  *  S  Y  *  *  S  R  R  E  K  K  A  L  C  Y  Y  I </second_frame>
            <third_frame>   I  G  S  L  S  P  K  R  G  S  F  E  E  G  N  G  D  A  V  H  A  E  A  I  R  S  A  L  N  E  M  A  S  S  S  K  N  K  F  R  R  S  G  W  T  S  S  E  D  E  T  D  V  M  D  Q  D  D  A  G  L  V  *  S  S  R  A  *  N  P  N  I  Y  W  F  I  F  L  I  L  I  E  C  L  V  E  F  F  R  S  T  I  F  T  F  V  *  F  V  I  W  *  I  C  F  L  T  F  F  L  C  L  F  S  S  T  I  F  T  S  L  T  V  R  D  H  I  D  N  Q  G  G  K  K  K  H  Y  A  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0114P24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32504" PGL_stop="31784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32504" e_stop="31784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32504" e_stop="31784" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32504" stop="31784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGGACGATGATGGGGAAGTTGTCTCGAATACTGTTAGTGGAGGACATCAAGAAAAGGAGGATATTGGTAAAGTTATCTTGGCTACAGCAAGTGGAGAGCATCAAGAGGAGGATGATGATGGTAAAGTTATCTCGGCTACAGCAAGTGGAGAACATCAAGAAAAAGAGGATGATGGTAAAGTTGTCTCGAAAACTGTAAATGGAGAAAATCAAGACAAGCCATCACTAGACGGAGTGGAAAAGCATGACCAGAAAACATTTCAACGGAAAAGAAAAAAGGGTATGAACATGCCTAGCAGAGCATCAAAACGGCTTGCTGGTATTAAAGCTGATACATCTCTTAAGCTCCAAACAAATGATCAAACCCAGCTAACTTCAGTTAGACAGCAGGAGGGGACACAAGCTGCCACCTCCGATAACCCTTTGAATTTTACTAATACCAGTAAGCATGTTGCAAGTACAGTAACTGGTATAACCATCAACAAGAAGGTAGAAACTGGGAATCTGACCATTAAAAGGAAACAACATCTTGTTACTTCACCACAAACGGAGGGAGAGAAGAAGCCTTCTCCAGCTGAACCTGCAAAAACTGTCCTTGCTAGCTGTGATGTCGATAAGAAAGGTGAAACAGCTCTTGAATCATCTTTAAGTGATCTTTGGACGGACCCGTGCATAGAATTTGCTATAAAAACTCTAACCGGTACAATTCCAGTCATA</gDNA_template>
            <first_frame> R  K  G  R  *  W  G  S  C  L  E  Y  C  *  W  R  T  S  R  K  G  G  Y  W  *  S  Y  L  G  Y  S  K  W  R  A  S  R  G  G  *  *  W  *  S  Y  L  G  Y  S  K  W  R  T  S  R  K  R  G  *  W  *  S  C  L  E  N  C  K  W  R  K  S  R  Q  A  I  T  R  R  S  G  K  A  *  P  E  N  I  S  T  E  K  K  K  G  Y  E  H  A  *  Q  S  I  K  T  A  C  W  Y  *  S  *  Y  I  S  *  A  P  N  K  *  S  N  P  A  N  F  S  *  T  A  G  G  D  T  S  C  H  L  R  *  P  F  E  F  Y  *  Y  Q  *  A  C  C  K  Y  S  N  W  Y  N  H  Q  Q  E  G  R  N  W  E  S  D  H  *  K  E  T  T  S  C  Y  F  T  T  N  G  G  R  E  E  A  F  S  S  *  T  C  K  N  C  P  C  *  L  *  C  R  *  E  R  *  N  S  S  *  I  I  F  K  *  S  L  D  G  P  V  H  R  I  C  Y  K  N  S  N  R  Y  N  S  S  H  </first_frame>
            <second_frame>  E  K  D  D  D  G  E  V  V  S  N  T  V  S  G  G  H  Q  E  K  E  D  I  G  K  V  I  L  A  T  A  S  G  E  H  Q  E  E  D  D  D  G  K  V  I  S  A  T  A  S  G  E  H  Q  E  K  E  D  D  G  K  V  V  S  K  T  V  N  G  E  N  Q  D  K  P  S  L  D  G  V  E  K  H  D  Q  K  T  F  Q  R  K  R  K  K  G  M  N  M  P  S  R  A  S  K  R  L  A  G  I  K  A  D  T  S  L  K  L  Q  T  N  D  Q  T  Q  L  T  S  V  R  Q  Q  E  G  T  Q  A  A  T  S  D  N  P  L  N  F  T  N  T  S  K  H  V  A  S  T  V  T  G  I  T  I  N  K  K  V  E  T  G  N  L  T  I  K  R  K  Q  H  L  V  T  S  P  Q  T  E  G  E  K  K  P  S  P  A  E  P  A  K  T  V  L  A  S  C  D  V  D  K  K  G  E  T  A  L  E  S  S  L  S  D  L  W  T  D  P  C  I  E  F  A  I  K  T  L  T  G  T  I  P  V  I </second_frame>
            <third_frame>   K  R  T  M  M  G  K  L  S  R  I  L  L  V  E  D  I  K  K  R  R  I  L  V  K  L  S  W  L  Q  Q  V  E  S  I  K  R  R  M  M  M  V  K  L  S  R  L  Q  Q  V  E  N  I  K  K  K  R  M  M  V  K  L  S  R  K  L  *  M  E  K  I  K  T  S  H  H  *  T  E  W  K  S  M  T  R  K  H  F  N  G  K  E  K  R  V  *  T  C  L  A  E  H  Q  N  G  L  L  V  L  K  L  I  H  L  L  S  S  K  Q  M  I  K  P  S  *  L  Q  L  D  S  R  R  G  H  K  L  P  P  P  I  T  L  *  I  L  L  I  P  V  S  M  L  Q  V  Q  *  L  V  *  P  S  T  R  R  *  K  L  G  I  *  P  L  K  G  N  N  I  L  L  L  H  H  K  R  R  E  R  R  S  L  L  Q  L  N  L  Q  K  L  S  L  L  A  V  M  S  I  R  K  V  K  Q  L  L  N  H  L  *  V  I  F  G  R  T  R  A  *  N  L  L  *  K  L  *  P  V  Q  F  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32503" stop="31784"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKDDDGEVVSNTVSGGHQEKEDIGKVILATASGEHQEEDDDGKVISATASGEHQEKEDDGKVVSKTVNGENQDKPSLDGVEKHDQKTFQRKRKKGMNMPSRASKRLAGIKADTSLKLQTNDQTQLTSVRQQEGTQAATSDNPLNFTNTSKHVASTVTGITINKKVETGNLTIKRKQHLVTSPQTEGEKKPSPAEPAKTVLASCDVDKKGETALESSLSDLWTDPCIEFAIKTLTGTIPVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="35217" PGL_stop="34657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35217" e_stop="34657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="35217" e_stop="34657" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35217" stop="34657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAATCCTCAAATTTTCTTTTCCCATTCACCACATTGGTATTATGGTGCACATCTTAAAGATGTATTTAATCTAAGCTTTGATCTCTAACATTGATGTGTATTTATGTTGATTGATTCTGGTGATTTTCTATTCGTTTTTGGAAGATAAGGTCCCTATTGTGCTTTTGGTGTTTTAAGAATAAGGAGATGCCTGTGAACCTAACATTCCATTTTGTTTAAAATGTGGAGAAAACTTAAGATTCTTTGAATAGTGTGTGGCAGGAAGTCAGCGCAGATTCAGAGCCTGCTATCTTATAACCCAACTTGTAGAATTTTCCTTGTGAGGACCATTTTATCTTTGCCAAAATGGACAAACTACATACTGCAATCTGTGCTTTTAATAGAAAATACCATGTTTGGAAATTTTGCTTGAATGCGATGCCATTATAAATTCTCTTTTCCAGAAAAAGTGAAGGGAAAGGATGAGTTTTGTTTATTCATTAAGAAACTGTGTAGTCCTATAACGGCTCTACCCGTCATATCCATGCCAACCTAGTTTCCACACCACCACTTGCAGTTT</gDNA_template>
            <first_frame> H  N  P  Q  I  F  F  S  H  S  P  H  W  Y  Y  G  A  H  L  K  D  V  F  N  L  S  F  D  L  *  H  *  C  V  F  M  L  I  D  S  G  D  F  L  F  V  F  G  R  *  G  P  Y  C  A  F  G  V  L  R  I  R  R  C  L  *  T  *  H  S  I  L  F  K  M  W  R  K  L  K  I  L  *  I  V  C  G  R  K  S  A  Q  I  Q  S  L  L  S  Y  N  P  T  C  R  I  F  L  V  R  T  I  L  S  L  P  K  W  T  N  Y  I  L  Q  S  V  L  L  I  E  N  T  M  F  G  N  F  A  *  M  R  C  H  Y  K  F  S  F  P  E  K  V  K  G  K  D  E  F  C  L  F  I  K  K  L  C  S  P  I  T  A  L  P  V  I  S  M  P  T  *  F  P  H  H  H  L  Q  F </first_frame>
            <second_frame>  I  I  L  K  F  S  F  P  I  H  H  I  G  I  M  V  H  I  L  K  M  Y  L  I  *  A  L  I  S  N  I  D  V  Y  L  C  *  L  I  L  V  I  F  Y  S  F  L  E  D  K  V  P  I  V  L  L  V  F  *  E  *  G  D  A  C  E  P  N  I  P  F  C  L  K  C  G  E  N  L  R  F  F  E  *  C  V  A  G  S  Q  R  R  F  R  A  C  Y  L  I  T  Q  L  V  E  F  S  L  *  G  P  F  Y  L  C  Q  N  G  Q  T  T  Y  C  N  L  C  F  *  *  K  I  P  C  L  E  I  L  L  E  C  D  A  I  I  N  S  L  F  Q  K  K  *  R  E  R  M  S  F  V  Y  S  L  R  N  C  V  V  L  *  R  L  Y  P  S  Y  P  C  Q  P  S  F  H  T  T  T  C  S   </second_frame>
            <third_frame>   *  S  S  N  F  L  F  P  F  T  T  L  V  L  W  C  T  S  *  R  C  I  *  S  K  L  *  S  L  T  L  M  C  I  Y  V  D  *  F  W  *  F  S  I  R  F  W  K  I  R  S  L  L  C  F  W  C  F  K  N  K  E  M  P  V  N  L  T  F  H  F  V  *  N  V  E  K  T  *  D  S  L  N  S  V  W  Q  E  V  S  A  D  S  E  P  A  I  L  *  P  N  L  *  N  F  P  C  E  D  H  F  I  F  A  K  M  D  K  L  H  T  A  I  C  A  F  N  R  K  Y  H  V  W  K  F  C  L  N  A  M  P  L  *  I  L  F  S  R  K  S  E  G  K  G  *  V  L  F  I  H  *  E  T  V  *  S  Y  N  G  S  T  R  H  I  H  A  N  L  V  S  T  P  P  L  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0114P24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="40162" PGL_stop="40607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40162" e_stop="40607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="40162" e_stop="40607" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40162" stop="40481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40162" stop="40450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40163" stop="40607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTCTCGCTTTATACAAAAAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTTGTTGGCTTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAATATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTCGGGAGAGAGACGCTGGCAAATTTTAGCTAATATTTGCTATGGAGCACAATTAAATCAAATCATAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  S  L  Y  T  K  K  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  L  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  Y  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  R  E  R  D  A  G  K  F  *  L  I  F  A  M  E  H  N  *  I  K  S  *  L  F  H  L  I  *  V  I   </first_frame>
            <second_frame>  K  I  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  S  R  F  I  Q  K  K  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  C  N  C  I  I  C  W  L  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  N  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  D  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  Y  L  L  W  S  T  I  K  S  N  H  S  Y  S  I  *  F  R  L  L  </second_frame>
            <third_frame>   K  Y  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  K  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  F  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  I  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  T  S  E  N  G  E  W  R  A  R  F  S  G  E  R  R  W  Q  I  L  A  N  I  C  Y  G  A  Q  L  N  Q  I  I  A  I  P  F  N  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40347" stop="40607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRIYIFLHVYIQFSLALYKTETELYTSVYKARETSENGEWRARFSGERRWQILANICYGAQLNQIIAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40165" stop="40362"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NICILHNYKCIARKYMFFSLYTKKNTIYTLLLYKARENCISLQLYNLQLYNLLAFFSAIFEVKCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="44854" PGL_stop="43719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44854" e_stop="43719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44854" e_stop="43719" e_length="1136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44854" stop="44142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44846" stop="44128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44845" stop="44356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44427" stop="43735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44420" stop="43719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTCCAATTGAGATGTGGTTGTTAGCCTCGCTACCTTCATAAGGTAAGAGCAAGACTACGTATACACCACTTCCTCCAGACTCTACTCGTGGAATTACTGTGTTGTTAGCAGCTTTTACCTTTTATGTGGGATGTCTGTAAAGGAGTAGTGCATATTCCCTATGGCCTGCAGAAGTGCTAGCACGGTTAGTTTCTGTTTGCTTGTGCTTGAACCACATTTCCTATGTATAAGTAAAAACTCCAAGACAATATTCCTGTTTTAACTCTCTTCATCTTCGAATAGCCCACCTCATCATATAATTGGCTTCGTGTTTCACTTATCTGGGCTAGCAGTCAATGAAGTCGGTTACTAATTTCAACAAAGACAAAATACGGAAGGTGATTTCTTTCAATCTGTTTTAAACCTTAATAACAGAGTTACCTAATACTTGTACTGGTATGATGTAGCACGTACTCAATGAAATAGTCGAGGTATGTGGCTTGAACAGCAGAGGTATGTGGCTTGAACAGCACCAGTACAAGAGAGGAAAGAATCAGTACTTAGTCAATCTGAAGTCTAAATCAAGTTTCATTTGATTGATGTAACCACTTTGTCTGTATCTACCACTATGAACGTGGCCTGATCTTTCATAAATAGACTTTAGTACAAACACATACAAAACAGCCTGAATAGGCCTGTCTTCTCTTCTAAACAACTATCACAAACACTTCAGTTTTACTCAAAATCATGAAACCTCCCACTTCATTACTTCTTCTCCTGGTTTTGATTTTGGTTTTGGTTCTTGTAGCATTCCGCTACGCCGATTGCAGACATTTAACTGCAGCTTATCAGTCTGTAAAGCTAAGAGGTAGTAAGAAATTTGTTTCAGTTCATGCTGGTGCTGCAGATCATCTTGTTCCTGGAGGACCAAATCCTCTTCACAACTGAACATATATCTTTTTGGTTTCCCACCCAGGCTCCGCCTCCATACCCAAGAAGACTCGAATCTGATTAAGGATGAAAGAGTACTTATCACTATACCATAATCCTCTTGTCAGTCAAACATATACTTAATTGTCTTTCTTTTTACAATACATAGAAATTAGAATATTACTGTTCTATTTGCATTGATGTACTATACTTGCCCAATTATTA</gDNA_template>
            <first_frame> E  S  N  *  D  V  V  V  S  L  A  T  F  I  R  *  E  Q  D  Y  V  Y  T  T  S  S  R  L  Y  S  W  N  Y  C  V  V  S  S  F  Y  L  L  C  G  M  S  V  K  E  *  C  I  F  P  M  A  C  R  S  A  S  T  V  S  F  C  L  L  V  L  E  P  H  F  L  C  I  S  K  N  S  K  T  I  F  L  F  *  L  S  S  S  S  N  S  P  P  H  H  I  I  G  F  V  F  H  L  S  G  L  A  V  N  E  V  G  Y  *  F  Q  Q  R  Q  N  T  E  G  D  F  F  Q  S  V  L  N  L  N  N  R  V  T  *  Y  L  Y  W  Y  D  V  A  R  T  Q  *  N  S  R  G  M  W  L  E  Q  Q  R  Y  V  A  *  T  A  P  V  Q  E  R  K  E  S  V  L  S  Q  S  E  V  *  I  K  F  H  L  I  D  V  T  T  L  S  V  S  T  T  M  N  V  A  *  S  F  I  N  R  L  *  Y  K  H  I  Q  N  S  L  N  R  P  V  F  S  S  K  Q  L  S  Q  T  L  Q  F  Y  S  K  S  *  N  L  P  L  H  Y  F  F  S  W  F  *  F  W  F  W  F  L  *  H  S  A  T  P  I  A  D  I  *  L  Q  L  I  S  L  *  S  *  E  V  V  R  N  L  F  Q  F  M  L  V  L  Q  I  I  L  F  L  E  D  Q  I  L  F  T  T  E  H  I  S  F  W  F  P  T  Q  A  P  P  P  Y  P  R  R  L  E  S  D  *  G  *  K  S  T  Y  H  Y  T  I  I  L  L  S  V  K  H  I  L  N  C  L  S  F  Y  N  T  *  K  L  E  Y  Y  C  S  I  C  I  D  V  L  Y  L  P  N  Y   </first_frame>
            <second_frame>  S  P  I  E  M  W  L  L  A  S  L  P  S  *  G  K  S  K  T  T  Y  T  P  L  P  P  D  S  T  R  G  I  T  V  L  L  A  A  F  T  F  Y  V  G  C  L  *  R  S  S  A  Y  S  L  W  P  A  E  V  L  A  R  L  V  S  V  C  L  C  L  N  H  I  S  Y  V  *  V  K  T  P  R  Q  Y  S  C  F  N  S  L  H  L  R  I  A  H  L  I  I  *  L  A  S  C  F  T  Y  L  G  *  Q  S  M  K  S  V  T  N  F  N  K  D  K  I  R  K  V  I  S  F  N  L  F  *  T  L  I  T  E  L  P  N  T  C  T  G  M  M  *  H  V  L  N  E  I  V  E  V  C  G  L  N  S  R  G  M  W  L  E  Q  H  Q  Y  K  R  G  K  N  Q  Y  L  V  N  L  K  S  K  S  S  F  I  *  L  M  *  P  L  C  L  Y  L  P  L  *  T  W  P  D  L  S  *  I  D  F  S  T  N  T  Y  K  T  A  *  I  G  L  S  S  L  L  N  N  Y  H  K  H  F  S  F  T  Q  N  H  E  T  S  H  F  I  T  S  S  P  G  F  D  F  G  F  G  S  C  S  I  P  L  R  R  L  Q  T  F  N  C  S  L  S  V  C  K  A  K  R  *  *  E  I  C  F  S  S  C  W  C  C  R  S  S  C  S  W  R  T  K  S  S  S  Q  L  N  I  Y  L  F  G  F  P  P  R  L  R  L  H  T  Q  E  D  S  N  L  I  K  D  E  R  V  L  I  T  I  P  *  S  S  C  Q  S  N  I  Y  L  I  V  F  L  F  T  I  H  R  N  *  N  I  T  V  L  F  A  L  M  Y  Y  T  C  P  I  I  </second_frame>
            <third_frame>   V  Q  L  R  C  G  C  *  P  R  Y  L  H  K  V  R  A  R  L  R  I  H  H  F  L  Q  T  L  L  V  E  L  L  C  C  *  Q  L  L  P  F  M  W  D  V  C  K  G  V  V  H  I  P  Y  G  L  Q  K  C  *  H  G  *  F  L  F  A  C  A  *  T  T  F  P  M  Y  K  *  K  L  Q  D  N  I  P  V  L  T  L  F  I  F  E  *  P  T  S  S  Y  N  W  L  R  V  S  L  I  W  A  S  S  Q  *  S  R  L  L  I  S  T  K  T  K  Y  G  R  *  F  L  S  I  C  F  K  P  *  *  Q  S  Y  L  I  L  V  L  V  *  C  S  T  Y  S  M  K  *  S  R  Y  V  A  *  T  A  E  V  C  G  L  N  S  T  S  T  R  E  E  R  I  S  T  *  S  I  *  S  L  N  Q  V  S  F  D  *  C  N  H  F  V  C  I  Y  H  Y  E  R  G  L  I  F  H  K  *  T  L  V  Q  T  H  T  K  Q  P  E  *  A  C  L  L  F  *  T  T  I  T  N  T  S  V  L  L  K  I  M  K  P  P  T  S  L  L  L  L  L  V  L  I  L  V  L  V  L  V  A  F  R  Y  A  D  C  R  H  L  T  A  A  Y  Q  S  V  K  L  R  G  S  K  K  F  V  S  V  H  A  G  A  A  D  H  L  V  P  G  G  P  N  P  L  H  N  *  T  Y  I  F  L  V  S  H  P  G  S  A  S  I  P  K  K  T  R  I  *  L  R  M  K  E  Y  L  S  L  Y  H  N  P  L  V  S  Q  T  Y  T  *  L  S  F  F  L  Q  Y  I  E  I  R  I  L  L  F  Y  L  H  *  C  T  I  L  A  Q  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44162" stop="43926"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTITNTSVLLKIMKPPTSLLLLLVLILVLVLVAFRYADCRHLTAAYQSVKLRGSKKFVSVHAGAADHLVPGGPNPLHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="47740" PGL_stop="44898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45002"/>
            <exon e_start="44910" e_stop="44898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45623" e_stop="45002" e_length="622"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="45001" i_stop="44911" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="44910" e_stop="44898" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47654" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47495" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555504" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47296"/>
              <exon start="45623" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47375" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47357" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47323" stop="47296"/>
              <exon start="45623" stop="45002"/>
              <exon start="44910" stop="44898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45516" stop="45002"/>
              <exon start="44910" stop="44903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45489" stop="45002"/>
              <exon start="44910" stop="44902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45425" stop="45002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45419" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45255" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAA : GAACAAAGGAAAT</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I  S  K  V  Y  L  C  L  F  Y  L  K :   N  K  G  N </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  V  K  F  T  Y  V  C  F  I  S   : R  T  K  E   </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q  *  S  L  P  M  S  V  L  S  Q  :  E  Q  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="44997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="45623" e_stop="44997" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47377" stop="47296"/>
              <exon start="45623" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47296"/>
              <exon start="45623" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45547" stop="44999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45425" stop="45002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45419" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45255" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45251" stop="45002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTATCTCAAGTGCA</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I  S  K  V  Y  L  C  L  F  Y  L  K  C  </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  V  K  F  T  Y  V  C  F  I  S  S  A </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q  *  S  L  P  M  S  V  L  S  Q  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45009"/>
            <exon e_start="44910" e_stop="44900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45623" e_stop="45009" e_length="615"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="45008" i_stop="44911" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="44910" e_stop="44900" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47296"/>
              <exon start="45623" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45582" stop="45009"/>
              <exon start="44910" stop="44900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45419" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45255" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTT : GAACAAAGGAA</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I  S  K  V  Y  L  C  L  F   : *  T  K  E </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  V  K  F  T  Y  V  C  F  :  E  Q  R   </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q  *  S  L  P  M  S  V  L :   N  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45008"/>
            <exon e_start="44910" e_stop="44899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45623" e_stop="45008" e_length="616"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="45007" i_stop="44911" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="44910" e_stop="44899" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45008"/>
              <exon start="44910" stop="44899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47296"/>
              <exon start="45623" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45419" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45255" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCTATGTCTGTTTTA : GAACAAAGGAAA</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I  S  K  V  Y  L  C  L  F  * :   N  K  G   </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  V  K  F  T  Y  V  C  F   : R  T  K  E  </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q  *  S  L  P  M  S  V  L  :  E  Q  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45020"/>
            <exon e_start="44910" e_stop="44899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45623" e_stop="45020" e_length="604"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="45019" i_stop="44911" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="44910" e_stop="44899" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47376" stop="47296"/>
              <exon start="45623" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45412" stop="45020"/>
              <exon start="44910" stop="44899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCAGTAAAGTTTACCT : GAACAAAGGAAA</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I  S  K  V  Y  L :   N  K  G   </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  V  K  F  T   : *  T  K  E  </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q  *  S  L  P  :  E  Q  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45033"/>
            <exon e_start="44910" e_stop="44900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.933" e_score="0.998"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45623" e_stop="45033" e_length="591"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.933">
            <gDNA_intron_boundary i_start="45032" i_stop="44911" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="44910" e_stop="44900" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47513" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47441" stop="47296"/>
              <exon start="45623" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47435" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47410" stop="47296"/>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
              <exon start="44910" stop="44900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAGGTATTCGAGTTACTCTATCTAATTTTGTCTATGAAATAATGAACAAGCCTTTTAATCCCTGCAATGGCAGGTATTGATAGAGCTCATACTTGATTACCTATCA : GAACAAAGGAA</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  V  F  E  L  L  Y  L  I  L  S  M  K  *  *  T  S  L  L  I  P  A  M  A  G  I  D  R  A  H  T  *  L  P  I   : R  T  K  E </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R  Y  S  S  Y  S  I  *  F  C  L  *  N  N  E  Q  A  F  *  S  L  Q  W  Q  V  L  I  E  L  I  L  D  Y  L  S  :  E  Q  R   </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L  G  I  R  V  T  L  S  N  F  V  Y  E  I  M  N  K  P  F  N  P  C  N  G  R  Y  *  *  S  S  Y  L  I  T  Y  Q :   N  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="47740" e_stop="47296"/>
            <exon e_start="45623" e_stop="45136"/>
            <exon e_start="45065" e_stop="45061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.896" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47740" e_stop="47296" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47295" i_stop="45624" i_length="1672"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45623" e_stop="45136" e_length="488"/>
          </exon>
          <intron i_serial="2" don_prob="0.611" acc_prob="0.896">
            <gDNA_intron_boundary i_start="45135" i_stop="45066" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45065" e_stop="45061" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47740" stop="47296"/>
              <exon start="45623" stop="45545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47693" stop="47296"/>
              <exon start="45623" stop="45434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47672" stop="47296"/>
              <exon start="45623" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47671" stop="47296"/>
              <exon start="45623" stop="45376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47668" stop="47296"/>
              <exon start="45623" stop="45136"/>
              <exon start="45065" stop="45061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47667" stop="47296"/>
              <exon start="45623" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="47296"/>
              <exon start="45623" stop="45180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47657" stop="47296"/>
              <exon start="45623" stop="45562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47656" stop="47296"/>
              <exon start="45623" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47653" stop="47296"/>
              <exon start="45623" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47644" stop="47296"/>
              <exon start="45623" stop="45494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47635" stop="47296"/>
              <exon start="45623" stop="45573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47296"/>
              <exon start="45623" stop="45292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47632" stop="47296"/>
              <exon start="45623" stop="45264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47626" stop="47296"/>
              <exon start="45623" stop="45342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47625" stop="47296"/>
              <exon start="45623" stop="45410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47616" stop="47296"/>
              <exon start="45623" stop="45350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47593" stop="47296"/>
              <exon start="45623" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47589" stop="47296"/>
              <exon start="45623" stop="45582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47585" stop="47296"/>
              <exon start="45623" stop="45140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47296"/>
              <exon start="45623" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47555" stop="47296"/>
              <exon start="45623" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47450" stop="47296"/>
              <exon start="45623" stop="45258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAGTCCTCGCACAGCACAATAAAATTATGAGTAAATAAAGAAACAAAACCTGATAATTCACAAATCAAGAAACTTCTCTTTGTTTATCTCGCCCAACAGTAGAAGCAAAAGATTTCAACTTCTTCTTCAATTATGGCTGTAGAACTATGGGAAACATTGAAAGATTCTATTACAGCTTACACTGGTCTAGCTCCGACTACTTTTTTTACCCTTGTTGCTCTAGCGCTTGCTTTCTACTATGTTGTATCCGAGTTGTTTGGTTCACCTGATAATCGTCATCAACAGAGGCCTAGAGATTTCGAGGAACAGAAGCCTCTGCCACCACCAGTTCAACTTGGAGAGATTTCTGGAGAGGAGTTGAAGCAGTATGATGGGTCGGATTCAAAGAAGCCTTTGTTGATGGCAATTAAGGGTCAGATCTATGATGTTTCACAGAGCAG : AATGTTTTATGGACCTGGAGGACCTTATGCATTATTTGCTGGAAAGGATGCTAGTAGAGCTCTTGCCAAGATGTCCTTTGAGGAGAAAGATCTCACTGGTGATATCTCTGGCCTTGGTCCATTTGAGCTTGAGGCCTTGCAAGATTGGGAGTATAAATTCATGAGCAAGTATGTCAAGGTTGGGACTGTCAAGCAGACAGTGCCAGTAAGTGATGGTGCAGCTAATGATGAATCTGTTGAATCAACCGATCCTGAAACCAAGCCAGCAGAAGCTGTTGCATCAGAGAGCGCTAAGCCATCGGAAGATGGCCCATCTGGAAGCAGTGTCGCTGAAATCGTGGACAAGTCTGACGGTGATGTTGACAAGAAGGACTAATTGGCACTTCGGAGAACAGTTCTATTGGAGATACAAAAACATGGCTTTGTGAAGATATGTGTATTTATCTCGTACCAGATGAAGTGTTGATTCTAGAGTATAGACTCCTTAG : GTATT</gDNA_template>
            <first_frame> S  T  S  P  R  T  A  Q  *  N  Y  E  *  I  K  K  Q  N  L  I  I  H  K  S  R  N  F  S  L  F  I  S  P  N  S  R  S  K  R  F  Q  L  L  L  Q  L  W  L  *  N  Y  G  K  H  *  K  I  L  L  Q  L  T  L  V  *  L  R  L  L  F  L  P  L  L  L  *  R  L  L  S  T  M  L  Y  P  S  C  L  V  H  L  I  I  V  I  N  R  G  L  E  I  S  R  N  R  S  L  C  H  H  Q  F  N  L  E  R  F  L  E  R  S  *  S  S  M  M  G  R  I  Q  R  S  L  C  *  W  Q  L  R  V  R  S  M  M  F  H  R  A   : E  C  F  M  D  L  E  D  L  M  H  Y  L  L  E  R  M  L  V  E  L  L  P  R  C  P  L  R  R  K  I  S  L  V  I  S  L  A  L  V  H  L  S  L  R  P  C  K  I  G  S  I  N  S  *  A  S  M  S  R  L  G  L  S  S  R  Q  C  Q  *  V  M  V  Q  L  M  M  N  L  L  N  Q  P  I  L  K  P  S  Q  Q  K  L  L  H  Q  R  A  L  S  H  R  K  M  A  H  L  E  A  V  S  L  K  S  W  T  S  L  T  V  M  L  T  R  R  T  N  W  H  F  G  E  Q  F  Y  W  R  Y  K  N  M  A  L  *  R  Y  V  Y  L  S  R  T  R  *  S  V  D  S  R  V  *  T  P  *  :  V   </first_frame>
            <second_frame>  Q  L  V  L  A  Q  H  N  K  I  M  S  K  *  R  N  K  T  *  *  F  T  N  Q  E  T  S  L  C  L  S  R  P  T  V  E  A  K  D  F  N  F  F  F  N  Y  G  C  R  T  M  G  N  I  E  R  F  Y  Y  S  L  H  W  S  S  S  D  Y  F  F  Y  P  C  C  S  S  A  C  F  L  L  C  C  I  R  V  V  W  F  T  *  *  S  S  S  T  E  A  *  R  F  R  G  T  E  A  S  A  T  T  S  S  T  W  R  D  F  W  R  G  V  E  A  V  *  W  V  G  F  K  E  A  F  V  D  G  N  *  G  S  D  L  *  C  F  T  E  Q  :  N  V  L  W  T  W  R  T  L  C  I  I  C  W  K  G  C  *  *  S  S  C  Q  D  V  L  *  G  E  R  S  H  W  *  Y  L  W  P  W  S  I  *  A  *  G  L  A  R  L  G  V  *  I  H  E  Q  V  C  Q  G  W  D  C  Q  A  D  S  A  S  K  *  W  C  S  *  *  *  I  C  *  I  N  R  S  *  N  Q  A  S  R  S  C  C  I  R  E  R  *  A  I  G  R  W  P  I  W  K  Q  C  R  *  N  R  G  Q  V  *  R  *  C  *  Q  E  G  L  I  G  T  S  E  N  S  S  I  G  D  T  K  T  W  L  C  E  D  M  C  I  Y  L  V  P  D  E  V  L  I  L  E  Y  R  L  L  R :   Y  </second_frame>
            <third_frame>   N  *  S  S  H  S  T  I  K  L  *  V  N  K  E  T  K  P  D  N  S  Q  I  K  K  L  L  F  V  Y  L  A  Q  Q  *  K  Q  K  I  S  T  S  S  S  I  M  A  V  E  L  W  E  T  L  K  D  S  I  T  A  Y  T  G  L  A  P  T  T  F  F  T  L  V  A  L  A  L  A  F  Y  Y  V  V  S  E  L  F  G  S  P  D  N  R  H  Q  Q  R  P  R  D  F  E  E  Q  K  P  L  P  P  P  V  Q  L  G  E  I  S  G  E  E  L  K  Q  Y  D  G  S  D  S  K  K  P  L  L  M  A  I  K  G  Q  I  Y  D  V  S  Q  S  R :   M  F  Y  G  P  G  G  P  Y  A  L  F  A  G  K  D  A  S  R  A  L  A  K  M  S  F  E  E  K  D  L  T  G  D  I  S  G  L  G  P  F  E  L  E  A  L  Q  D  W  E  Y  K  F  M  S  K  Y  V  K  V  G  T  V  K  Q  T  V  P  V  S  D  G  A  A  N  D  E  S  V  E  S  T  D  P  E  T  K  P  A  E  A  V  A  S  E  S  A  K  P  S  E  D  G  P  S  G  S  S  V  A  E  I  V  D  K  S  D  G  D  V  D  K  K  D  *  L  A  L  R  R  T  V  L  L  E  I  Q  K  H  G  F  V  K  I  C  V  F  I  S  Y  Q  M  K  C  *  F  *  S  I  D  S  L   : G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47633" stop="47296"/>
                    <exon start="45623" stop="45248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKISTSSSIMAVELWETLKDSITAYTGLAPTTFFTLVALALAFYYVVSELFGSPDNRHQQRPRDFEEQKPLPPPVQLGEISGEELKQYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGTVKQTVPVSDGAANDESVESTDPETKPAEAVASESAKPSEDGPSGSSVAEIVDKSDGDVDKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="100853" PGL_stop="95308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100853" e_stop="100760"/>
            <exon e_start="96131" e_stop="95731"/>
            <exon e_start="95537" e_stop="95308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.736" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100853" e_stop="100760" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100759" i_stop="96132" i_length="4628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96131" e_stop="95731" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.736">
            <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95537" e_stop="95308" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100853" stop="100760"/>
              <exon start="96131" stop="95731"/>
              <exon start="95537" stop="95310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100824" stop="100760"/>
              <exon start="96131" stop="95731"/>
              <exon start="95537" stop="95375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100824" stop="100760"/>
              <exon start="96131" stop="95733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100805" stop="100760"/>
              <exon start="96131" stop="95731"/>
              <exon start="95537" stop="95427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100800" stop="100760"/>
              <exon start="96131" stop="95731"/>
              <exon start="95537" stop="95486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96067" stop="95731"/>
              <exon start="95537" stop="95308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96067" stop="95731"/>
              <exon start="95537" stop="95311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACACTATCATCCCGCATTTTTCACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAG : GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG : GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCTTC</gDNA_template>
            <first_frame> Y  T  I  I  P  H  F  S  P  N  F  L  L  R  T  L  S  S  E  T  T  I  Q  Q  F  T  Y  V  L  N  *   : G  A  F  I  P  K  H  L  G  D  *  R  F  L  D  G  R  R  R  F  F  C  K  E  M  G  G  P  R  Y  *  Y  L  G  E  D  T  P  V  F  *  P  F  *  V  D  F  W  T  C  S  C  L  *  C  V  A  I  G  L  Y  *  S  T  S  L  D  D  A  G  L  V  D  I  K  I  K  L  Y  Q  N  P  I  R  A  I  C  I  C  G  L  S  V  G  *  N  I  D  Q  P  P  E  D  L  F  E  P  Q  *  R  K  H  T  N  I  N  L  P  L  Q  F  V  C  Q  R  R  S  V  D  L  Y  C  R  E  :  V  S  T  S  K  T  S  R  Y  A  C  L  E  Q  N  K  K  D  R  N  M  Q  G  Y  S  Y  V  G  R  S  *  I  T  D  D  A  *  Y  S  K  S  S  V  C  H  G  G  N  C  K  E  L  Q  K  F  C  *  A  Q  D  N  G  A  L  *  Y  A  L  C  I  Y  T  G  I  I  S   </first_frame>
            <second_frame>  T  L  S  S  R  I  F  H  P  I  F  F  C  A  H  S  Q  V  K  Q  R  S  N  N  L  P  M  F  *  I  K  :  E  L  L  F  P  N  I  *  E  I  E  D  F  L  M  E  E  G  D  S  S  V  R  R  W  E  D  L  D  I  D  I  L  V  K  I  L  Q  S  F  D  L  F  E  L  T  S  G  L  A  H  V  C  S  A  W  R  L  A  C  T  D  Q  L  L  W  M  T  L  D  L  S  I  L  K  S  N  Y  I  K  I  P  L  E  P  Y  V  Y  V  D  C  Q  S  D  K  T  L  T  S  L  L  K  I  C  L  N  L  S  R  G  N  I  R  T  L  I  F  H  Y  N  L  Y  V  S  D  D  Q  L  T  Y  T  A  E  R :   C  P  R  L  K  R  L  V  M  P  A  W  N  R  I  K  K  T  G  I  C  R  A  I  H  M  W  E  D  L  E  S  L  T  M  P  S  I  A  N  P  P  Y  V  M  E  E  I  A  R  S  C  K  N  F  A  E  L  K  I  M  G  P  C  D  M  L  F  A  S  T  L  V  S  F  L  </second_frame>
            <third_frame>   H  Y  H  P  A  F  F  T  Q  F  S  F  A  H  T  L  K  *  N  N  D  P  T  I  Y  L  C  S  K  L  R :   S  F  Y  S  Q  T  F  R  R  L  K  I  S  *  W  K  K  E  I  L  L  *  G  D  G  R  T  S  I  L  I  S  W  *  R  Y  S  S  L  L  T  F  L  S  *  L  L  D  L  L  M  F  V  V  R  G  D  W  L  V  L  I  N  F  F  G  *  R  W  T  C  R  Y  *  N  Q  I  I  S  K  S  H  *  S  H  M  Y  M  W  T  V  S  R  I  K  H  *  P  A  S  *  R  F  V  *  T  S  V  E  E  T  Y  E  H  *  S  S  I  T  I  C  M  S  A  T  I  S  *  L  I  L  P  R   : G  V  H  V  *  N  V  S  L  C  L  L  G  T  E  *  K  R  Q  E  Y  A  G  L  F  I  C  G  K  I  L  N  H  *  R  C  L  V  *  Q  I  L  R  M  S  W  R  K  L  Q  G  V  A  K  I  L  L  S  S  R  *  W  G  P  V  I  C  S  L  H  L  H  W  Y  H  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96107" stop="95731"/>
                    <exon start="95537" stop="95309"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIEDFLMEEGDSSVRRWEDLDIDILVKILQSFDLFELTSGLAHVCSAWRLACTDQLLWMTLDLSILKSNYIKIPLEPYVYVDCQSDKTLTSLLKICLNLSRGNIRTLIFHYNLYVSDDQLTYTAERCPRLKRLVMPAWNRIKKTGICRAIHMWEDLESLTMPSIANPPYVMEEIARSCKNFAELKIMGPCDMLFASTLVSFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100830" e_stop="100655"/>
            <exon e_start="96131" e_stop="95731"/>
            <exon e_start="95537" e_stop="95308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.736" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100830" e_stop="100655" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100654" i_stop="96132" i_length="4523"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96131" e_stop="95731" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.736">
            <gDNA_intron_boundary i_start="95730" i_stop="95538" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95537" e_stop="95308" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100830" stop="100655"/>
              <exon start="96131" stop="95878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100817" stop="100655"/>
              <exon start="96131" stop="95775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100676" stop="100655"/>
              <exon start="96131" stop="95740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96067" stop="95731"/>
              <exon start="95537" stop="95308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96067" stop="95731"/>
              <exon start="95537" stop="95311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTTTCTTTTGCGCACACTCTCAAGTGAAACAACGATCCAACAATTTACCTATGTTCTAAATTAAGGCATGTACCAAATCTCTCTCTCTCTTTTCCTCCGTTCTTTAAAGGTTGTTTTTTCGGATTAATTTTTGATTCAAAGCTGGATCTTGATTCCAAAACTTGTTCTGG : GAGCTTTTATTCCCAAACATTTAGGAGATTGAAGATTTCTTGATGGAAGAAGGAGATTCTTCTGTAAGGAGATGGGAGGACCTCGATATTGATATCTTGGTGAAGATACTCCAGTCTTTTGACCTTTTTGAGTTGACTTCTGGACTTGCTCATGTTTGTAGTGCGTGGCGATTGGCTTGTACTGATCAACTTCTTTGGATGACGCTGGACTTGTCGATATTAAAATCAAATTATATCAAAATCCCATTAGAGCCATATGTATATGTGGACTGTCAGTCGGATAAAACATTGACCAGCCTCCTGAAGATTTGTTTGAACCTCAGTAGAGGAAACATACGAACATTAATCTTCCATTACAATTTGTATGTCAGCGACGATCAGTTGACTTATACTGCCGAGAG : GTGTCCACGTCTAAAACGTCTCGTTATGCCTGCTTGGAACAGAATAAAAAAGACAGGAATATGCAGGGCTATTCATATGTGGGAAGATCTTGAATCACTGACGATGCCTAGTATAGCAAATCCTCCGTATGTCATGGAGGAAATTGCAAGGAGTTGCAAAAATTTTGCTGAGCTCAAGATAATGGGGCCCTGTGATATGCTCTTTGCATCTACACTGGTATCATTTCTTC</gDNA_template>
            <first_frame> T  Q  F  S  F  A  H  T  L  K  *  N  N  D  P  T  I  Y  L  C  S  K  L  R  H  V  P  N  L  S  L  S  F  P  P  F  F  K  G  C  F  F  G  L  I  F  D  S  K  L  D  L  D  S  K  T  C  S  G :   S  F  Y  S  Q  T  F  R  R  L  K  I  S  *  W  K  K  E  I  L  L  *  G  D  G  R  T  S  I  L  I  S  W  *  R  Y  S  S  L  L  T  F  L  S  *  L  L  D  L  L  M  F  V  V  R  G  D  W  L  V  L  I  N  F  F  G  *  R  W  T  C  R  Y  *  N  Q  I  I  S  K  S  H  *  S  H  M  Y  M  W  T  V  S  R  I  K  H  *  P  A  S  *  R  F  V  *  T  S  V  E  E  T  Y  E  H  *  S  S  I  T  I  C  M  S  A  T  I  S  *  L  I  L  P  R   : G  V  H  V  *  N  V  S  L  C  L  L  G  T  E  *  K  R  Q  E  Y  A  G  L  F  I  C  G  K  I  L  N  H  *  R  C  L  V  *  Q  I  L  R  M  S  W  R  K  L  Q  G  V  A  K  I  L  L  S  S  R  *  W  G  P  V  I  C  S  L  H  L  H  W  Y  H  F  F </first_frame>
            <second_frame>  P  N  F  L  L  R  T  L  S  S  E  T  T  I  Q  Q  F  T  Y  V  L  N  *  G  M  Y  Q  I  S  L  S  L  F  L  R  S  L  K  V  V  F  S  D  *  F  L  I  Q  S  W  I  L  I  P  K  L  V  L   : G  A  F  I  P  K  H  L  G  D  *  R  F  L  D  G  R  R  R  F  F  C  K  E  M  G  G  P  R  Y  *  Y  L  G  E  D  T  P  V  F  *  P  F  *  V  D  F  W  T  C  S  C  L  *  C  V  A  I  G  L  Y  *  S  T  S  L  D  D  A  G  L  V  D  I  K  I  K  L  Y  Q  N  P  I  R  A  I  C  I  C  G  L  S  V  G  *  N  I  D  Q  P  P  E  D  L  F  E  P  Q  *  R  K  H  T  N  I  N  L  P  L  Q  F  V  C  Q  R  R  S  V  D  L  Y  C  R  E  :  V  S  T  S  K  T  S  R  Y  A  C  L  E  Q  N  K  K  D  R  N  M  Q  G  Y  S  Y  V  G  R  S  *  I  T  D  D  A  *  Y  S  K  S  S  V  C  H  G  G  N  C  K  E  L  Q  K  F  C  *  A  Q  D  N  G  A  L  *  Y  A  L  C  I  Y  T  G  I  I  S   </second_frame>
            <third_frame>   P  I  F  F  C  A  H  S  Q  V  K  Q  R  S  N  N  L  P  M  F  *  I  K  A  C  T  K  S  L  S  L  F  S  S  V  L  *  R  L  F  F  R  I  N  F  *  F  K  A  G  S  *  F  Q  N  L  F  W  :  E  L  L  F  P  N  I  *  E  I  E  D  F  L  M  E  E  G  D  S  S  V  R  R  W  E  D  L  D  I  D  I  L  V  K  I  L  Q  S  F  D  L  F  E  L  T  S  G  L  A  H  V  C  S  A  W  R  L  A  C  T  D  Q  L  L  W  M  T  L  D  L  S  I  L  K  S  N  Y  I  K  I  P  L  E  P  Y  V  Y  V  D  C  Q  S  D  K  T  L  T  S  L  L  K  I  C  L  N  L  S  R  G  N  I  R  T  L  I  F  H  Y  N  L  Y  V  S  D  D  Q  L  T  Y  T  A  E  R :   C  P  R  L  K  R  L  V  M  P  A  W  N  R  I  K  K  T  G  I  C  R  A  I  H  M  W  E  D  L  E  S  L  T  M  P  S  I  A  N  P  P  Y  V  M  E  E  I  A  R  S  C  K  N  F  A  E  L  K  I  M  G  P  C  D  M  L  F  A  S  T  L  V  S  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96107" stop="95731"/>
                    <exon start="95537" stop="95309"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIEDFLMEEGDSSVRRWEDLDIDILVKILQSFDLFELTSGLAHVCSAWRLACTDQLLWMTLDLSILKSNYIKIPLEPYVYVDCQSDKTLTSLLKICLNLSRGNIRTLIFHYNLYVSDDQLTYTAERCPRLKRLVMPAWNRIKKTGICRAIHMWEDLESLTMPSIANPPYVMEEIARSCKNFAELKIMGPCDMLFASTLVSFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103563" PGL_stop="108583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103563" e_stop="103900"/>
            <exon e_start="108107" e_stop="108583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.944" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="103563" e_stop="103900" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.944">
            <gDNA_intron_boundary i_start="103901" i_stop="108106" i_length="4206"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="108107" e_stop="108583" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103563" stop="103900"/>
              <exon start="108107" stop="108379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103660" stop="103900"/>
              <exon start="108107" stop="108379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103661" stop="103900"/>
              <exon start="108107" stop="108386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103661" stop="103900"/>
              <exon start="108107" stop="108386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103665" stop="103900"/>
              <exon start="108107" stop="108358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103667" stop="103900"/>
              <exon start="108107" stop="108330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103671" stop="103900"/>
              <exon start="108107" stop="108482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103678" stop="103900"/>
              <exon start="108107" stop="108583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103680" stop="103900"/>
              <exon start="108107" stop="108583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103734" stop="103900"/>
              <exon start="108107" stop="108358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103754" stop="103900"/>
              <exon start="108107" stop="108358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103817" stop="103900"/>
              <exon start="108107" stop="108331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216705" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103849" stop="103900"/>
              <exon start="108107" stop="108379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108107" stop="108532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108349" stop="108572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGGTCGGGTCGGGTCCGAAGCGGCTCTTTCCGGCTCAATACAAGAGGACGGGTCTTAGGGCTATATGATAATACGAATTCTTCGAAGTGAGTTGTGGAACGCCCAATTGATCTTTGATCTTTTCATCTGAAAACTCTTTGCTTCTCATCAGCGGTAGACGGAAAAATGGCCGGCGGAGGAGACCACTCTCATGGTGGAGATTTCAGGACTAAGGTCTGGAGTATGAGTGGTGGGCCGTACTGTAGGCCCGTACATTGGAAGCGCAATACCGCAATTGCCCTCGCCGGAATCGTACTCGTTTGCATTCCTGTCGCCTTGAAATCTGCCGAGCTCGAG : CAAAGGCCACATCTTCCAGTCCGCCCCATTCCTTCTCAGCTATGGTGCAAGAACTTTGGAACAAAAGACTACTAGTTTTGTTAGTGAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCATTTCATGGTTACTTTTTATTTGAAATAGCGTGACCTATAATGACAATGTTCCATTGAATAAACATGACACCGCGTGCTCTTTTTACAACTGATTAAAGCATGTCAACAAACTTTCATGATGGTCTTCTTTGAAGTATTGTTCGTCTTGCTCATCCACCATGTACCACTGCGCTTTCTATCAAAGTAGATCCAGAAGAAGCTAAATAAGTGAATTCTTATATTTGCCTTACATTTGGTGTGTATAATGCAGGTATTGGTGAGTGATTTTACAATTATAATCTCTCTTCTTACTAGCTCGACTAGTTGAGCTCAAATGCCAATA</gDNA_template>
            <first_frame> S  G  R  V  G  S  E  A  A  L  S  G  S  I  Q  E  D  G  S  *  G  Y  M  I  I  R  I  L  R  S  E  L  W  N  A  Q  L  I  F  D  L  F  I  *  K  L  F  A  S  H  Q  R  *  T  E  K  W  P  A  E  E  T  T  L  M  V  E  I  S  G  L  R  S  G  V  *  V  V  G  R  T  V  G  P  Y  I  G  S  A  I  P  Q  L  P  S  P  E  S  Y  S  F  A  F  L  S  P  *  N  L  P  S  S  S :   K  G  H  I  F  Q  S  A  P  F  L  L  S  Y  G  A  R  T  L  E  Q  K  T  T  S  F  V  S  E  A  T  I  V  A  C  C  G  E  D  D  R  L  A  F  C  I  W  I  L  N  C  I  S  W  L  L  F  I  *  N  S  V  T  Y  N  D  N  V  P  L  N  K  H  D  T  A  C  S  F  Y  N  *  L  K  H  V  N  K  L  S  *  W  S  S  L  K  Y  C  S  S  C  S  S  T  M  Y  H  C  A  F  Y  Q  S  R  S  R  R  S  *  I  S  E  F  L  Y  L  P  Y  I  W  C  V  *  C  R  Y  W  *  V  I  L  Q  L  *  S  L  F  L  L  A  R  L  V  E  L  K  C  Q   </first_frame>
            <second_frame>  R  V  G  S  G  P  K  R  L  F  P  A  Q  Y  K  R  T  G  L  R  A  I  *  *  Y  E  F  F  E  V  S  C  G  T  P  N  *  S  L  I  F  S  S  E  N  S  L  L  L  I  S  G  R  R  K  N  G  R  R  R  R  P  L  S  W  W  R  F  Q  D  *  G  L  E  Y  E  W  W  A  V  L  *  A  R  T  L  E  A  Q  Y  R  N  C  P  R  R  N  R  T  R  L  H  S  C  R  L  E  I  C  R  A  R   : A  K  A  T  S  S  S  P  P  H  S  F  S  A  M  V  Q  E  L  W  N  K  R  L  L  V  L  L  V  K  Q  R  *  *  L  A  V  G  K  M  I  A  L  P  S  V  F  G  F  *  T  A  F  H  G  Y  F  L  F  E  I  A  *  P  I  M  T  M  F  H  *  I  N  M  T  P  R  A  L  F  T  T  D  *  S  M  S  T  N  F  H  D  G  L  L  *  S  I  V  R  L  A  H  P  P  C  T  T  A  L  S  I  K  V  D  P  E  E  A  K  *  V  N  S  Y  I  C  L  T  F  G  V  Y  N  A  G  I  G  E  *  F  Y  N  Y  N  L  S  S  Y  *  L  D  *  L  S  S  N  A  N  </second_frame>
            <third_frame>   G  S  G  R  V  R  S  G  S  F  R  L  N  T  R  G  R  V  L  G  L  Y  D  N  T  N  S  S  K  *  V  V  E  R  P  I  D  L  *  S  F  H  L  K  T  L  C  F  S  S  A  V  D  G  K  M  A  G  G  G  D  H  S  H  G  G  D  F  R  T  K  V  W  S  M  S  G  G  P  Y  C  R  P  V  H  W  K  R  N  T  A  I  A  L  A  G  I  V  L  V  C  I  P  V  A  L  K  S  A  E  L  E  :  Q  R  P  H  L  P  V  R  P  I  P  S  Q  L  W  C  K  N  F  G  T  K  D  Y  *  F  C  *  *  S  N  D  S  S  L  L  W  G  R  *  S  P  C  L  L  Y  L  D  S  E  L  H  F  M  V  T  F  Y  L  K  *  R  D  L  *  *  Q  C  S  I  E  *  T  *  H  R  V  L  F  L  Q  L  I  K  A  C  Q  Q  T  F  M  M  V  F  F  E  V  L  F  V  L  L  I  H  H  V  P  L  R  F  L  S  K  *  I  Q  K  K  L  N  K  *  I  L  I  F  A  L  H  L  V  C  I  M  Q  V  L  V  S  D  F  T  I  I  I  S  L  L  T  S  S  T  S  *  A  Q  M  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103682" stop="103900"/>
                    <exon start="108107" stop="108181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFHLKTLCFSSAVDGKMAGGGDHSHGGDFRTKVWSMSGGPYCRPVHWKRNTAIALAGIVLVCIPVALKSAELEQRPHLPVRPIPSQLWCKNFGTKDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="110217" PGL_stop="111122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110217" e_stop="110320"/>
            <exon e_start="110412" e_stop="110569"/>
            <exon e_start="110906" e_stop="110967"/>
            <exon e_start="111110" e_stop="111122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.925" e_score="0.933"/>
          <exon-intron don_prob="0.661" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="110217" e_stop="110320" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.925">
            <gDNA_intron_boundary i_start="110321" i_stop="110411" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110412" e_stop="110569" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.661" acc_prob="0.988">
            <gDNA_intron_boundary i_start="110570" i_stop="110905" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110906" e_stop="110967" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110968" i_stop="111109" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111110" e_stop="111122" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110217" stop="110320"/>
              <exon start="110412" stop="110569"/>
              <exon start="110906" stop="110967"/>
              <exon start="111110" stop="111122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279095" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGCTGAAACCCAGATGCCAAGAACTGTACCGGAATGGGTGTAAAGAATCTTTGGGATATCTTGGAATCTTGCAAGAAAACTCTTCCTCTTCATCATCTCCA : GAACAAGAGGGTATGTATAGATCTATCTTGCTGGATTGTTCAACTTCAGAATGTCAACAAATCCCATTGTGCGATGAAGGAGAAGCTTTATCTCAGGGGCCTATTTCACCGCGTTAGAGCTCTTATTGCTTTGAATTGTAGCGTTATCTTTGTTACTG : ATGGAGCCATTCCTGCCATCAAATCATCTACCTATAGAAGGCGATTAAATCTTGGAAATGTG : CTCACTCAAGATG</gDNA_template>
            <first_frame> N  C  *  N  P  D  A  K  N  C  T  G  M  G  V  K  N  L  W  D  I  L  E  S  C  K  K  T  L  P  L  H  H  L  Q :   N  K  R  V  C  I  D  L  S  C  W  I  V  Q  L  Q  N  V  N  K  S  H  C  A  M  K  E  K  L  Y  L  R  G  L  F  H  R  V  R  A  L  I  A  L  N  C  S  V  I  F  V  T   : D  G  A  I  P  A  I  K  S  S  T  Y  R  R  R  L  N  L  G  N  V  :  L  T  Q  D  </first_frame>
            <second_frame>  I  A  E  T  Q  M  P  R  T  V  P  E  W  V  *  R  I  F  G  I  S  W  N  L  A  R  K  L  F  L  F  I  I  S   : R  T  R  G  Y  V  *  I  Y  L  A  G  L  F  N  F  R  M  S  T  N  P  I  V  R  *  R  R  S  F  I  S  G  A  Y  F  T  A  L  E  L  L  L  L  *  I  V  A  L  S  L  L  L  :  M  E  P  F  L  P  S  N  H  L  P  I  E  G  D  *  I  L  E  M  C :   S  L  K  M </second_frame>
            <third_frame>   L  L  K  P  R  C  Q  E  L  Y  R  N  G  C  K  E  S  L  G  Y  L  G  I  L  Q  E  N  S  S  S  S  S  S  P  :  E  Q  E  G  M  Y  R  S  I  L  L  D  C  S  T  S  E  C  Q  Q  I  P  L  C  D  E  G  E  A  L  S  Q  G  P  I  S  P  R  *  S  S  Y  C  F  E  L  *  R  Y  L  C  Y  * :   W  S  H  S  C  H  Q  I  I  Y  L  *  K  A  I  K  S  W  K  C   : A  H  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110226" stop="110320"/>
                    <exon start="110412" stop="110569"/>
                    <exon start="110906" stop="110967"/>
                    <exon start="111110" stop="111121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPDAKNCTGMGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSHCAMKEKLYLRGLFHRVRALIALNCSVIFVTDGAIPAIKSSTYRRRLNLGNVLTQD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="113680" PGL_stop="115967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113680" e_stop="113687"/>
            <exon e_start="113904" e_stop="114004"/>
            <exon e_start="114551" e_stop="114681"/>
            <exon e_start="115610" e_stop="115967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113680" e_stop="113687" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.789">
            <gDNA_intron_boundary i_start="113688" i_stop="113903" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113904" e_stop="114004" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.885">
            <gDNA_intron_boundary i_start="114005" i_stop="114550" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114551" e_stop="114681" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="114682" i_stop="115609" i_length="928"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="115610" e_stop="115967" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113680" stop="113687"/>
              <exon start="113904" stop="114004"/>
              <exon start="114551" stop="114681"/>
              <exon start="115610" stop="115967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACAG : ATGAGTATATCCTTCCTAAGATTGCTGAAAGGGAACTGCGGAGATTTGCCAACTTGCGGTCCACTGCATCACAACTGGGAGTTCAGCTTCCACTAAATGAG : ATGCCAATAAAGTGTCCATTATCTCAAATTGTCAAGCCAAGAAAAGTTCAAGGAGTCGATTGCTTTGAGGTGTCTTGGGAAGAAATGGATGGGCTTGAAACCTCCATAGTACCAGCTGATCTTGTTGAGAG : GGCTTGTCCGGAGAGGATTTTGGAGTTCCAAGAAAGACGAGCTCAAGGAAAGAAACGAAACAATGCTCGATCAAGACCAAGAAAACCAGAAAATCCACAGCTTTTGGGTCAAATTGACCAGAAACTCCAAGACCTCTTGCTTGAGATTGATAGAGAAACCTCTACTACCAATGATGCCACTTCTTTATGTAGATCAGTACCAGAGGATGATGACGACATTGCTCATATTCAGGTGGTAGATACAGGTAAACAGTCCCATTATACATGGAACAGCAACTGTGTGAAGAAGGGTGGTGATTTTACTTATGGGATCACCAGTTTCCAAGAGAGCAACATTTCACAAGTTTCATCTGAAGAT</gDNA_template>
            <first_frame> E  N  R :   *  V  Y  P  S  *  D  C  *  K  G  T  A  E  I  C  Q  L  A  V  H  C  I  T  T  G  S  S  A  S  T  K  *   : D  A  N  K  V  S  I  I  S  N  C  Q  A  K  K  S  S  R  S  R  L  L  *  G  V  L  G  R  N  G  W  A  *  N  L  H  S  T  S  *  S  C  *  E  :  G  L  S  G  E  D  F  G  V  P  R  K  T  S  S  R  K  E  T  K  Q  C  S  I  K  T  K  K  T  R  K  S  T  A  F  G  S  N  *  P  E  T  P  R  P  L  A  *  D  *  *  R  N  L  Y  Y  Q  *  C  H  F  F  M  *  I  S  T  R  G  *  *  R  H  C  S  Y  S  G  G  R  Y  R  *  T  V  P  L  Y  M  E  Q  Q  L  C  E  E  G  W  *  F  Y  L  W  D  H  Q  F  P  R  E  Q  H  F  T  S  F  I  *  R  </first_frame>
            <second_frame>  K  T   : D  E  Y  I  L  P  K  I  A  E  R  E  L  R  R  F  A  N  L  R  S  T  A  S  Q  L  G  V  Q  L  P  L  N  E  :  M  P  I  K  C  P  L  S  Q  I  V  K  P  R  K  V  Q  G  V  D  C  F  E  V  S  W  E  E  M  D  G  L  E  T  S  I  V  P  A  D  L  V  E  R :   A  C  P  E  R  I  L  E  F  Q  E  R  R  A  Q  G  K  K  R  N  N  A  R  S  R  P  R  K  P  E  N  P  Q  L  L  G  Q  I  D  Q  K  L  Q  D  L  L  L  E  I  D  R  E  T  S  T  T  N  D  A  T  S  L  C  R  S  V  P  E  D  D  D  D  I  A  H  I  Q  V  V  D  T  G  K  Q  S  H  Y  T  W  N  S  N  C  V  K  K  G  G  D  F  T  Y  G  I  T  S  F  Q  E  S  N  I  S  Q  V  S  S  E  D </second_frame>
            <third_frame>   K  Q  :  M  S  I  S  F  L  R  L  L  K  G  N  C  G  D  L  P  T  C  G  P  L  H  H  N  W  E  F  S  F  H  *  M  R :   C  Q  *  S  V  H  Y  L  K  L  S  S  Q  E  K  F  K  E  S  I  A  L  R  C  L  G  K  K  W  M  G  L  K  P  P  *  Y  Q  L  I  L  L  R   : G  L  V  R  R  G  F  W  S  S  K  K  D  E  L  K  E  R  N  E  T  M  L  D  Q  D  Q  E  N  Q  K  I  H  S  F  W  V  K  L  T  R  N  S  K  T  S  C  L  R  L  I  E  K  P  L  L  P  M  M  P  L  L  Y  V  D  Q  Y  Q  R  M  M  T  T  L  L  I  F  R  W  *  I  Q  V  N  S  P  I  I  H  G  T  A  T  V  *  R  R  V  V  I  L  L  M  G  S  P  V  S  K  R  A  T  F  H  K  F  H  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113681" stop="113687"/>
                    <exon start="113904" stop="114004"/>
                    <exon start="114551" stop="114681"/>
                    <exon start="115610" stop="115967"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTDEYILPKIAERELRRFANLRSTASQLGVQLPLNEMPIKCPLSQIVKPRKVQGVDCFEVSWEEMDGLETSIVPADLVERACPERILEFQERRAQGKKRNNARSRPRKPENPQLLGQIDQKLQDLLLEIDRETSTTNDATSLCRSVPEDDDDIAHIQVVDTGKQSHYTWNSNCVKKGGDFTYGITSFQESNISQVSSED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="121137" PGL_stop="117640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121137" e_stop="121118"/>
            <exon e_start="119933" e_stop="119442"/>
            <exon e_start="119192" e_stop="118873"/>
            <exon e_start="117729" e_stop="117640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121137" e_stop="121118" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="121117" i_stop="119934" i_length="1184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119933" e_stop="119442" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119441" i_stop="119193" i_length="249"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="119192" e_stop="118873" e_length="320"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118872" i_stop="117730" i_length="1143"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="117729" e_stop="117640" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121137" stop="121118"/>
              <exon start="119933" stop="119442"/>
              <exon start="119192" stop="118873"/>
              <exon start="117729" stop="117640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGCTCTCATGGCTCAG : GTTGGATCCTTTGTACCAGCGATCTCTGCAAAACTACATGTACTGGATGGGATATATACTCGCATGGGTGCATCAGACAGTATTCAGCAGGGAAGGAGTACATTCTTAGAAGAACTCAGTGAGGCTTCTGATATACTGAGAAAATGCTCAGCCAATTCACTGGTTATACTTGATGAGCTTGGGAGAGGCACCAGCACACATGATGGCGTAGCAATTGCTTATGCAACACTTCAATATCTCCTGGAGCACAAAAAATGCATGGTTCTATTTGTTACTCATTACCCTGAAATTGTCAGTATCAAGAATAAGTTTCCAGGCTCTGTGGGACCATACCATGTGTCATATTTGACATCCCAAAGAGATGTGAATGGGGATTTCAAGTCAAATGAGAAGATGGATCACATTAATGGTGAGGACATCACCTACCTATACAAACTTGCACCAGGTGTTTCTGGGAGAAGTTTTGGTTTTAAAGTTGCTCAGCTTGCACAA : CTGCCGGTCACATGTATTCAGCAAGCCATTGTAATAGCTGCAAAACTGGAAGCAGCAGTCTGTAACTACACTGAACAACAATTTCGAAGGAGCTGTTCTCTAAGCCATAGGCAAGATGGCTGTAAAAATGAACCCACAGAGGATGTCCTAGAATCAGATTCCTTGTCTGCTGGAATAGTTGAAGGCTTAGACGACATCAGTGAGCTTTACAGGGAGTTGTTTATGAACCTTAACTATGCATATCTTGAAGAACATGGTAATGACAGGAGACTCCAGTTTCTAATGCAAGCTAGAAGCCTTGCAGCTCAGTTAATAAGTAG : GTAAATGCTGGTAGTGAAACTGCCTGCCTGCTTGTACAGTAGGACACCACTATTTTGATCCAAATATAGATGTTGAATATCTTGCTTTTT</gDNA_template>
            <first_frame> L  L  L  S  W  L  R :   L  D  P  L  Y  Q  R  S  L  Q  N  Y  M  Y  W  M  G  Y  I  L  A  W  V  H  Q  T  V  F  S  R  E  G  V  H  S  *  K  N  S  V  R  L  L  I  Y  *  E  N  A  Q  P  I  H  W  L  Y  L  M  S  L  G  E  A  P  A  H  M  M  A  *  Q  L  L  M  Q  H  F  N  I  S  W  S  T  K  N  A  W  F  Y  L  L  L  I  T  L  K  L  S  V  S  R  I  S  F  Q  A  L  W  D  H  T  M  C  H  I  *  H  P  K  E  M  *  M  G  I  S  S  Q  M  R  R  W  I  T  L  M  V  R  T  S  P  T  Y  T  N  L  H  Q  V  F  L  G  E  V  L  V  L  K  L  L  S  L  H  N :   C  R  S  H  V  F  S  K  P  L  *  *  L  Q  N  W  K  Q  Q  S  V  T  T  L  N  N  N  F  E  G  A  V  L  *  A  I  G  K  M  A  V  K  M  N  P  Q  R  M  S  *  N  Q  I  P  C  L  L  E  *  L  K  A  *  T  T  S  V  S  F  T  G  S  C  L  *  T  L  T  M  H  I  L  K  N  M  V  M  T  G  D  S  S  F  *  C  K  L  E  A  L  Q  L  S  *  *  V   : G  K  C  W  *  *  N  C  L  P  A  C  T  V  G  H  H  Y  F  D  P  N  I  D  V  E  Y  L  A  F  </first_frame>
            <second_frame>  Y  C  S  H  G  S   : G  W  I  L  C  T  S  D  L  C  K  T  T  C  T  G  W  D  I  Y  S  H  G  C  I  R  Q  Y  S  A  G  K  E  Y  I  L  R  R  T  Q  *  G  F  *  Y  T  E  K  M  L  S  Q  F  T  G  Y  T  *  *  A  W  E  R  H  Q  H  T  *  W  R  S  N  C  L  C  N  T  S  I  S  P  G  A  Q  K  M  H  G  S  I  C  Y  S  L  P  *  N  C  Q  Y  Q  E  *  V  S  R  L  C  G  T  I  P  C  V  I  F  D  I  P  K  R  C  E  W  G  F  Q  V  K  *  E  D  G  S  H  *  W  *  G  H  H  L  P  I  Q  T  C  T  R  C  F  W  E  K  F  W  F  *  S  C  S  A  C  T   : T  A  G  H  M  Y  S  A  S  H  C  N  S  C  K  T  G  S  S  S  L  *  L  H  *  T  T  I  S  K  E  L  F  S  K  P  *  A  R  W  L  *  K  *  T  H  R  G  C  P  R  I  R  F  L  V  C  W  N  S  *  R  L  R  R  H  Q  *  A  L  Q  G  V  V  Y  E  P  *  L  C  I  S  *  R  T  W  *  *  Q  E  T  P  V  S  N  A  S  *  K  P  C  S  S  V  N  K  *  :  V  N  A  G  S  E  T  A  C  L  L  V  Q  *  D  T  T  I  L  I  Q  I  *  M  L  N  I  L  L  F </second_frame>
            <third_frame>   I  A  L  M  A  Q  :  V  G  S  F  V  P  A  I  S  A  K  L  H  V  L  D  G  I  Y  T  R  M  G  A  S  D  S  I  Q  Q  G  R  S  T  F  L  E  E  L  S  E  A  S  D  I  L  R  K  C  S  A  N  S  L  V  I  L  D  E  L  G  R  G  T  S  T  H  D  G  V  A  I  A  Y  A  T  L  Q  Y  L  L  E  H  K  K  C  M  V  L  F  V  T  H  Y  P  E  I  V  S  I  K  N  K  F  P  G  S  V  G  P  Y  H  V  S  Y  L  T  S  Q  R  D  V  N  G  D  F  K  S  N  E  K  M  D  H  I  N  G  E  D  I  T  Y  L  Y  K  L  A  P  G  V  S  G  R  S  F  G  F  K  V  A  Q  L  A  Q  :  L  P  V  T  C  I  Q  Q  A  I  V  I  A  A  K  L  E  A  A  V  C  N  Y  T  E  Q  Q  F  R  R  S  C  S  L  S  H  R  Q  D  G  C  K  N  E  P  T  E  D  V  L  E  S  D  S  L  S  A  G  I  V  E  G  L  D  D  I  S  E  L  Y  R  E  L  F  M  N  L  N  Y  A  Y  L  E  E  H  G  N  D  R  R  L  Q  F  L  M  Q  A  R  S  L  A  A  Q  L  I  S  R :   *  M  L  V  V  K  L  P  A  C  L  Y  S  R  T  P  L  F  *  S  K  Y  R  C  *  I  S  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0114P24.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121135" stop="121118"/>
                    <exon start="119933" stop="119442"/>
                    <exon start="119192" stop="118873"/>
                    <exon start="117729" stop="117726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALMAQVGSFVPAISAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASDILRKCSANSLVILDELGRGTSTHDGVAIAYATLQYLLEHKKCMVLFVTHYPEIVSIKNKFPGSVGPYHVSYLTSQRDVNGDFKSNEKMDHINGEDITYLYKLAPGVSGRSFGFKVAQLAQLPVTCIQQAIVIAAKLEAAVCNYTEQQFRRSCSLSHRQDGCKNEPTEDVLESDSLSAGIVEGLDDISELYRELFMNLNYAYLEEHGNDRRLQFLMQARSLAAQLISR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 191 chains have been computed
$ 
$ memory statistics:
$ 290584 bytes spliced alignments in total
$ 141 spliced alignments have been stored
$ 2060 bytes was the average size of a spliced alignment
$ 27824 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1739 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 212 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:40:53
-->
