<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:43:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372567" ref_strand="+" ref_description="SGN-E372567 [TUS-31-E17](-)">
      <seq>cagtcggatccaagagcaataaggtgccttatgttaaagcacttttcaattttttaaatcagcattctaacttgtcaaacacagtactatggactccatcaaccactcgtgtcgctgcactttatgctgctgcagacgcttatgtaatgaattctcagggacttggagaaacatttgggagagtgacaattgaagcaatggcatttggtcttcctgtgctgggaacagatgctggaggcacaaaggagattgttgaacataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttctttttttactgttgtaccagcccagctacctgttcccatctgatgtctagtactgcattggattcgcgttacatagggcgaacaattttttcatatagcatgtatgtatgtttttatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="2282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23" g_stop="180" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="181" i_stop="1144" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1145" g_stop="1201" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="215" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1464" g_stop="1982" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="734" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E372567" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23" e_stop="180"/>
          <exon e_start="1145" e_stop="1201"/>
          <exon e_start="1464" e_stop="1982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCGGATCCAAGAGCAATAAGGTGCCTTATGTTAAAGCACTTCTCAATTTTCTAAATCAGCATTCTAACTTGTCAAACACAGTACTATGGACTCCATCAACCACTCGTGTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAGGTTAGCCCTTACAACTATATCTAATTCGATTATTGTTCAGTTCAGCAAATGTACAGTGTCAATGGTTCTGAGAGATATTAATACTATTATATAAGAGAAGAGTCTATAGGGGAGTTAAAGTAAAATTAGAAGAGAGTTAAAAGAGAATGTAGGTCAAGTATAATAGACAAAATATGAGAGAGTAGATGTTTCCTGTGATATGTGCAAATCTAAATTATTTTTCACGATTGGTGATATTTCAGATTGAAATGTGAAAGCATCGTAAGTTTGTATCACCTCTTGTAAGATTTCTCACTAAATGTAAATATTACCCAGCAATGTGAAATTGTTTTCAGTAACAAGTACCAAGTCAATACATTTTAGCAACTAGCAAGTACAAATTATGGGTCTCCCAATGAATTGAGAACCTTTGTTGGTTTGCTTTCTCGTATCCATTTATTAATTAATTCGACTTGGATTTATATGAGGAACTATACCAAAATCACGACTACAGAGATTTTTTGCTATTCTGGTTTTCAGTGGTTCTCTAGAGGGTAGGAGATAGAATGAAATTGGTTCTTCATAAGCTTCAAATTAGAAGTGCGAGGAAAAGGTTGAACCTTGAGCATGAAGTCTGTTTGACTTTGGTCTTTTGGTTGGGAAGAAAGGGAAAGCAGTCCGTCAGCAACTACTTAATGCTTAATCCTATTAGTTAGCTCAGTGTTTTAGGGAGCATGGGGCATATATTAGTCTGGTGGTAGAAGTAAGGATTCTAAAGTTTTTTGCTGTTGAATGAGACCATACTGTGCACAATGACAGATAATGTATGAAAAAGGAGTACTATAAAGTACATCTCATTGAAACATATTTCCTGGAATGGTTACAATGATCATATGGATTCTTTTATACGTCTTGGACTACTATTGGTTTCCTTCAAGTAGTTAGTACTTCTTTATCTCGAGTAATGGCTGTTTACTTTTTGCAGGGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCTGTAAGATTCTCAATTCCGTCCTGCCAATAGTATAATGTGCACGTACTTTTTGTATGAGACAGAAAGTCGTTGTTTCTTTTAAATACACTTGCAAAGAAGTTACGCCGAGCTACAGAGTGTATGATCATGGAGCAGTAATCTGCGACATATTAGTTGAATTTTGTGATAATATGCACTGGCTTTGAAGACAATGCAAAGTTTCTTGTTGATAAGTAAGTAATATGGCCAAATAAAGTGGATTTAACATATAATTTTGTTACAGGTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAACACAACA</genome_strand>
        <mrna_strand>CAGTCGGATCCAAGAGCAATAAGGTGCCTTATGTTAAAGCACTTTTCAATTTTTTAAATCAGCATTCTAACTTGTCAAACACAGTACTATGGACTCCATCAACCACTCGTGTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT......................................................................................................................................................................................................................................................................GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543191" ref_strand="+" ref_description="SGN-E543191 [TUS-64-O3](-)">
      <seq>ggactccatcaaccactcgtgtcgctgcactttatgctgctgcagacgcttatgtaatgaattctcagggacttggagaaacatttgggagagtgacaattgaagcaatggcatttggtcttcctgtgctgggaacagatgctggaggcacaaaggagattgttgaacataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttctttttttactgttgtaccagcccagctacctgttcccatctgatgtctagtactgcattggattcgcgttacatagggcgaacaattttttcatatagcatgtatgtatgtttttatcaacacaacacaagtaattaaaatctttctgatttataactaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="93319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113" g_stop="180" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="181" i_stop="1144" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1145" g_stop="1201" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="125" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1464" g_stop="2042" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="702" r_length="577" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E543191" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113" e_stop="180"/>
          <exon e_start="1145" e_stop="1201"/>
          <exon e_start="1464" e_stop="2042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCCATCAACCACTCGTGTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAGGTTAGCCCTTACAACTATATCTAATTCGATTATTGTTCAGTTCAGCAAATGTACAGTGTCAATGGTTCTGAGAGATATTAATACTATTATATAAGAGAAGAGTCTATAGGGGAGTTAAAGTAAAATTAGAAGAGAGTTAAAAGAGAATGTAGGTCAAGTATAATAGACAAAATATGAGAGAGTAGATGTTTCCTGTGATATGTGCAAATCTAAATTATTTTTCACGATTGGTGATATTTCAGATTGAAATGTGAAAGCATCGTAAGTTTGTATCACCTCTTGTAAGATTTCTCACTAAATGTAAATATTACCCAGCAATGTGAAATTGTTTTCAGTAACAAGTACCAAGTCAATACATTTTAGCAACTAGCAAGTACAAATTATGGGTCTCCCAATGAATTGAGAACCTTTGTTGGTTTGCTTTCTCGTATCCATTTATTAATTAATTCGACTTGGATTTATATGAGGAACTATACCAAAATCACGACTACAGAGATTTTTTGCTATTCTGGTTTTCAGTGGTTCTCTAGAGGGTAGGAGATAGAATGAAATTGGTTCTTCATAAGCTTCAAATTAGAAGTGCGAGGAAAAGGTTGAACCTTGAGCATGAAGTCTGTTTGACTTTGGTCTTTTGGTTGGGAAGAAAGGGAAAGCAGTCCGTCAGCAACTACTTAATGCTTAATCCTATTAGTTAGCTCAGTGTTTTAGGGAGCATGGGGCATATATTAGTCTGGTGGTAGAAGTAAGGATTCTAAAGTTTTTTGCTGTTGAATGAGACCATACTGTGCACAATGACAGATAATGTATGAAAAAGGAGTACTATAAAGTACATCTCATTGAAACATATTTCCTGGAATGGTTACAATGATCATATGGATTCTTTTATACGTCTTGGACTACTATTGGTTTCCTTCAAGTAGTTAGTACTTCTTTATCTCGAGTAATGGCTGTTTACTTTTTGCAGGGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCTGTAAGATTCTCAATTCCGTCCTGCCAATAGTATAATGTGCACGTACTTTTTGTATGAGACAGAAAGTCGTTGTTTCTTTTAAATACACTTGCAAAGAAGTTACGCCGAGCTACAGAGTGTATGATCATGGAGCAGTAATCTGCGACATATTAGTTGAATTTTGTGATAATATGCACTGGCTTTGAAGACAATGCAAAGTTTCTTGTTGATAAGTAAGTAATATGGCCAAATAAAGTGGATTTAACATATAATTTTGTTACAGGTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAACACAACACAAGTAATTAAAATCTTTCTGATTTATAACTAACTGTACAATCAAAACAAACTCTTTTTA</genome_strand>
        <mrna_strand>GGACTCCATCAACCACTCGTGTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT......................................................................................................................................................................................................................................................................GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAACACAACACAAGTAATTAAAATCTTTCTGATTTATAACTAA--AAAAAAAAAAAAAAAACTCGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265925" ref_strand="+" ref_description="SGN-E265925 [cLEI-6-E5]">
      <seq>gtcgctgcactttatgctgctgcagacgcttatgtaatgaattctcagggacttggagaaacatttgggagagtgacaattgaagcaatggcatttggtcttcctgtgctgggaacagatgctggaggcacaaaggagattgttgaacataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttctttttttactgttgtaccagcccagctacctgttcccatctgatgtctagtactgcattggattcgcgttacatagggcgaacaattttttcatatagcatgtatgtatgtttttatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1" stop="2275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133" g_stop="180" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="181" i_stop="1144" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1145" g_stop="1201" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1464" g_stop="1975" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="617" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E265925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133" e_stop="180"/>
          <exon e_start="1145" e_stop="1201"/>
          <exon e_start="1464" e_stop="1975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAGGTTAGCCCTTACAACTATATCTAATTCGATTATTGTTCAGTTCAGCAAATGTACAGTGTCAATGGTTCTGAGAGATATTAATACTATTATATAAGAGAAGAGTCTATAGGGGAGTTAAAGTAAAATTAGAAGAGAGTTAAAAGAGAATGTAGGTCAAGTATAATAGACAAAATATGAGAGAGTAGATGTTTCCTGTGATATGTGCAAATCTAAATTATTTTTCACGATTGGTGATATTTCAGATTGAAATGTGAAAGCATCGTAAGTTTGTATCACCTCTTGTAAGATTTCTCACTAAATGTAAATATTACCCAGCAATGTGAAATTGTTTTCAGTAACAAGTACCAAGTCAATACATTTTAGCAACTAGCAAGTACAAATTATGGGTCTCCCAATGAATTGAGAACCTTTGTTGGTTTGCTTTCTCGTATCCATTTATTAATTAATTCGACTTGGATTTATATGAGGAACTATACCAAAATCACGACTACAGAGATTTTTTGCTATTCTGGTTTTCAGTGGTTCTCTAGAGGGTAGGAGATAGAATGAAATTGGTTCTTCATAAGCTTCAAATTAGAAGTGCGAGGAAAAGGTTGAACCTTGAGCATGAAGTCTGTTTGACTTTGGTCTTTTGGTTGGGAAGAAAGGGAAAGCAGTCCGTCAGCAACTACTTAATGCTTAATCCTATTAGTTAGCTCAGTGTTTTAGGGAGCATGGGGCATATATTAGTCTGGTGGTAGAAGTAAGGATTCTAAAGTTTTTTGCTGTTGAATGAGACCATACTGTGCACAATGACAGATAATGTATGAAAAAGGAGTACTATAAAGTACATCTCATTGAAACATATTTCCTGGAATGGTTACAATGATCATATGGATTCTTTTATACGTCTTGGACTACTATTGGTTTCCTTCAAGTAGTTAGTACTTCTTTATCTCGAGTAATGGCTGTTTACTTTTTGCAGGGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCTGTAAGATTCTCAATTCCGTCCTGCCAATAGTATAATGTGCACGTACTTTTTGTATGAGACAGAAAGTCGTTGTTTCTTTTAAATACACTTGCAAAGAAGTTACGCCGAGCTACAGAGTGTATGATCATGGAGCAGTAATCTGCGACATATTAGTTGAATTTTGTGATAATATGCACTGGCTTTGAAGACAATGCAAAGTTTCTTGTTGATAAGTAAGTAATATGGCCAAATAAAGTGGATTTAACATATAATTTTGTTACAGGTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAA</genome_strand>
        <mrna_strand>GTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT......................................................................................................................................................................................................................................................................GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206199" ref_strand="+" ref_description="SGN-E206199 [cLEC-29-M9]">
      <seq>gacttggagaaacatttgggagagtgacaattgaagcaatggcatttggtcttcctgtgctgggaacagatgctggaggcacaaaggagattgttgaacataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="846" stop="2154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1146" g_stop="1201" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1464" g_stop="1854" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="447" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="471"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E206199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1146" e_stop="1201"/>
          <exon e_start="1464" e_stop="1854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCTGTAAGATTCTCAATTCCGTCCTGCCAATAGTATAATGTGCACGTACTTTTTGTATGAGACAGAAAGTCGTTGTTTCTTTTAAATACACTTGCAAAGAAGTTACGCCGAGCTACAGAGTGTATGATCATGGAGCAGTAATCTGCGACATATTAGTTGAATTTTGTGATAATATGCACTGGCTTTGAAGACAATGCAAAGTTTCTTGTTGATAAGTAAGTAATATGGCCAAATAAAGTGGATTTAACATATAATTTTGTTACAGGTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTT</genome_strand>
        <mrna_strand>GACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT......................................................................................................................................................................................................................................................................GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208251" ref_strand="+" ref_description="SGN-E208251 [cLEC-37-L15]">
      <seq>gacttggagaaacatttgggagagtgacaattgaagcaatggcatttggtcttcctgtgctgggaacagatgctggaggcacaaaggagattgttgaacataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="846" stop="2154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1146" g_stop="1201" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1464" g_stop="1854" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="447" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="473"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E208251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1146" e_stop="1201"/>
          <exon e_start="1464" e_stop="1854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCTGTAAGATTCTCAATTCCGTCCTGCCAATAGTATAATGTGCACGTACTTTTTGTATGAGACAGAAAGTCGTTGTTTCTTTTAAATACACTTGCAAAGAAGTTACGCCGAGCTACAGAGTGTATGATCATGGAGCAGTAATCTGCGACATATTAGTTGAATTTTGTGATAATATGCACTGGCTTTGAAGACAATGCAAAGTTTCTTGTTGATAAGTAAGTAATATGGCCAAATAAAGTGGATTTAACATATAATTTTGTTACAGGTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTT</genome_strand>
        <mrna_strand>GACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT......................................................................................................................................................................................................................................................................GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712650" ref_strand="+" ref_description="SGN-E712650 [FB05BG06]">
      <seq>ataacgtaacaggtcttcttcattctttgggacgtccaggcactcaagtcctcgcccaaaatctccagtatttgctgaacaatccctcggaaaggcaacgattgggaagcaatggaagaaagaaagtaaaggatatgtacctaaagaagcacatgtacaggagattcggagaagtactatacgactgcatgagaataaaataagatcgaatgcagaccatttttttctgtttaaacatttttcctgtattgctgtaagctcttcccttagaaaacacagatcaagaatcagtcttttgtacagtacgaaagatagttgtgtttattaatggagagattcttcttccttctttttttactgttgtaccagcccagctacctgttcccatctgatgtctagtactgcattggattcgcgttacatagggcgaacaattttttcatatagcatgtatgtatgtttttatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1207" stop="2285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1507" g_stop="1984" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E712650" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1507" e_stop="1984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAACACAACACA</genome_strand>
        <mrna_strand>ATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552374" ref_strand="+" ref_description="SGN-E552374 [cTSB-3-L18]">
      <seq>gatgaatgtaaatgctcctttttttgaaggtaaattccacgtcatcggtggatatgacacgagcatgcaaggccagttcggtacgagcgctgagtcattcgatccttccacgtggcagtgggaccaagtcaacgaacatttctttgaatctgccacgtgtccaagaacctgcgttgagggtggggacggcaaattgtacttgtgccgggacggtgatgtgctggcactcggtaagtctacgtggcaagctgtggcggcaattccgacggagctccggagcgtagcttttgtgacagcatggaggggtaaaattctgatgaccggttctatgggatttaatgaaccccacaatacatatgttcttgatttaaagagttataaatggaccaaaatggatactccggtgtacttttccggccacgttcaatccggctgctgcctggagatgtaaaaagagtttgttttgattgtacagttagttataaatcagaaagattttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2789" stop="1687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2489" g_stop="1987" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="534"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E552374" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2489" e_stop="1987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGTAAATGCTCC-TTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATGCAAGGCCAGTTCGGTACGAGCGCTGAGTCATTCGATCCTTCCACGTGGCAGTGGGACCAAGTCAACGAACATTTCTTTGAATCTGCCACGTGTCCAAGAACCTGCGTTGAGGGTGGGGACGGCAAATTGTACTTGTGCCGGGACGGTGATGTGCTGGCACTCGGTAAGTCTACGTGGCAAGCTGTGGCGGCAATTCCGACGGAGCTCCGGAGCGTAGCTTTTGTGACAGCATGGAGGGGTAAAATTCTGATGACCGGTTCTATGGGATTTAATGAACCCCACAATACATATGTTCTTGATTTAAAGAGTTATAAATGGACCAAAATGGATACTCCGGTGTACTTTTCCGGCCACGTTCAATCCGGCTGCTGCCTGGAGATGTAAAAAGAGTTTGTTTTGATTGTACAGTTAGTTATAAATCAGAAAGATTTTAATTA</genome_strand>
        <mrna_strand>GATGAATGTAAATGCTCCTTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATGCAAGGCCAGTTCGGTACGAGCGCTGAGTCATTCGATCCTTCCACGTGGCAGTGGGACCAAGTCAACGAACATTTCTTTGAATCTGCCACGTGTCCAAGAACCTGCGTTGAGGGTGGGGACGGCAAATTGTACTTGTGCCGGGACGGTGATGTGCTGGCACTCGGTAAGTCTACGTGGCAAGCTGTGGCGGCAATTCCGACGGAGCTCCGGAGCGTAGCTTTTGTGACAGCATGGAGGGGTAAAATTCTGATGACCGGTTCTATGGGATTTAATGAACCCCACAATACATATGTTCTTGATTTAAAGAGTTATAAATGGACCAAAATGGATACTCCGGTGTACTTTTCCGGCCACGTTCAATCCGGCTGCTGCCTGGAGATGTAAAAAGAGTTTGTTTTGATTGTACAGTTAGTTATAAATCAGAAAGATTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687794" ref_strand="+" ref_description="SGN-E687794 [T3_tus_81_A22]">
      <seq>cgagttccttataataatttctcgtcacttacttccgtcagtagaaactggaagcttcagattgagcttcccgagttttggaggcgaagaaaagctactggttcaacccgtcaggtgattttaatggcgcaagctcgaattgacccgagattaaaactcgggtcatttaagtactctgctttttcgttttacaagcttacgctttacgaaccggagtcgggtaattgggcggaattaccaccggttcctggaatttccgatgggctgccaatgttttgtcagctcgtcggagtgggattgaatctggtggtgatgggcgggtggaaccctctttcttgggaaccttcgaacgccgtttttgtttttagctttgtgtccgccacgtggcgacgtggagccgacatgcctggttgccggagatcatttttcggttgtgcgtcggattctgaacggacggtgtacgtcgccggaggtcacgacgaggagaaaaacgcactcaaatcggcgatggcgtatgacgtggcaagggatatgtgggtcccggtgcctgacatgacaagtgaaagagatgaatgtaaatgctccttttttgaaggtaaattccacgtcatcggtggatatgacacgagcatgcaaggccagttcggtacgagcgctgagtcattcgatccttccacgtggcagtgggaccaagtcaacgaacatttctttgaatctgccacgtgtccaagaacctgcgttgagggtggggacggcaaattgtacttgtgccgggacggtgatgtgctggcactcggtaagtctacgtggcaagctgtggcggcaattccgacggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3356" stop="1917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3056" g_stop="2217" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E687794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3056" e_stop="2217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGTGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATGCAAGGCCAGTTCGGTACGAGCGCTGAGTCATTCGATCCTTCCACGTGGCAGTGGGACCAAGTCAACGAACATTTCTTTGAATCTGCCACGTGTCCAAGAACCTGCGTTGAGGGTGGGGACGGCAAATTGTACTTGTGCCGGGACGGTGATGTGCTGGCACTCGGTAAGTCTACGTGGCAAGCTGTGGCGGCAATTCCGACGGAGCTC</genome_strand>
        <mrna_strand>CGAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGTGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATGCAAGGCCAGTTCGGTACGAGCGCTGAGTCATTCGATCCTTCCACGTGGCAGTGGGACCAAGTCAACGAACATTTCTTTGAATCTGCCACGTGTCCAAGAACCTGCGTTGAGGGTGGGGACGGCAAATTGTACTTGTGCCGGGACGGTGATGTGCTGGCACTCGGTAAGTCTACGTGGCAAGCTGTGGCGGCAATTCCGACGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330495" ref_strand="+" ref_description="SGN-E330495 [cTOD-4-J2]">
      <seq>gagttccttataataatttctcgtcacttacttccgtcagtagaaactggaagcttcagattgagcttcccgagttttggaggcgaagaaaagctactggttcaacccgtcaggtgattttaatggcgcaagctcgaattgacccgagattaaaactcgggtcatttaagtactctgctttttcgttttacaagcttacgctttacgaaccggagtcgggtaattgggcggaattaccaccggttcctggaatttccgatgggctgccaatgttttgtcagctcgtcggagtgggattgaatctggtggtgatgggcgggtggaaccctctttcttgggaaccttcgaacgccgtttttgtttttagctttgtgtccgccacgtggcgacgtggagccgacatgcctggttgccggagatcatttttcggttgtgcgtcggattctgaacggacggtgtacgtcgccggaggtcacgacgaggagaaaaacgcactcaaatcggcgatggcgtatgacgtggcaagggatatgtgggtcccggtgcctgacatgacaagtgaaagagatgaatgtaaatgctccttttttgaaggtaaattccacgtcatcggtggatatgacacgagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3355" stop="2124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3055" g_stop="2424" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E330495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3055" e_stop="2424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGTGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATG</genome_strand>
        <mrna_strand>GAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGTGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326645" ref_strand="+" ref_description="SGN-E326645 [cTOC-17-I4]">
      <seq>gagttccttataataatttctcgtcacttacttccgtcagtagaaactggaagcttcagattgagcttcccgagttttggaggcgaagaaaagctactggttcaacccgtcaggtgattttaatggcgcaagctcgaattgacccgagattaaaactcgggtcatttaagtactctgctttttcgttttacaagcttacgctttacgaaccggagtcgggtaattgggcggaattaccaccggttcctggaatttccgatgggctgccaatgttttgtcagctcgtcggagtgggattgaatctggtggtgatgggcgggtggaaccctctttcttgggaaccttcgaacgccgtttttgtttttagctttgtgtccgccacgtggcgacgtggagccgacatgcctggttgccggagatcatttttcggttgtgcgtcggattctgaacggacggtgtacgtcgccggaggtcacgacgaggagaaaaacgcactcaaatcggcgatggcgtatgacgtggcaagggatatgntgggtcccggtgcctgacatgancagtgaaagagatgaatgtaaatgctccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3355" stop="2166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3055" g_stop="2465" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E326645" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3055" e_stop="2465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATG-TGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTG</genome_strand>
        <mrna_strand>GAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGNTGGGTCCCGGTGCCTGACATGANCAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701007" ref_strand="+" ref_description="SGN-E701007 [FA14DB02]">
      <seq>tctacatatatatgtacacacacagtagcccaatttgttaatttcttccatctttttcttcatggatcttcttccgggtcttcctaatgatattgctcttgaatgtctcattcgtcttcctctccatcaattctctaaagctgcttctgtatgcaaaaactggaaaaaagaaatcaagcatcccctctttcgacaacgacggaaagaatcgggtcttacccgacccgttatcgtattatcccaagccatggttactactattcgagacccttatggcattaccagcctttcatctactcagtactatagactcaccctttacgatccggaaaggggattttggtacgatttgccgccgataccggagttgattgatggattgcccatgttttgccgggttgtaggagtcgggtcggatgtaatggtgataggcgggtgtgacccggttaattggagggttatggactctgttttcatctacaatttcgtatccggttcgtggcgtcgtggggcggatatgccgggaggacagaggctgttttttggatgtgcgtcggattcggagagatttgtggttgtcgccggcggacataacgacgagaagaatgcgctgagatcggctctgttgtatgacgtggcggaagacgagtgggttactctgccggaaatggccatggagcgtgacgagtgcaagtgcgcattttaccgcggtgaattccacgtcatcggaggctatcctacgcctgcacaaggtcaattccagcgcagcgctgaggtgttcaactccgccacgtcaagggagtggcgcctggaggaggacttcctcggtgccgccacgtgtccccagacctgcgtggaaagcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10212" stop="8748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9912" g_stop="9048" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E701007" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9912" e_stop="9048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACATATATATGTACACACACAGTAGCCCAATTTGTTAATTTCTTCCATCTTTTTCTTCATGGATCTTCTTCCGGGTCTTCCTAATGATATTGCTCTTGAATGTCTCATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCAAAAACTGGAAAAAAGAAATCAAGCATCCCCTCTTTCGACAACGACGGAAAGAATCGGGTCTTACCCGACCCGTTATCGTATTATCCCAAGCCATGGTTACTACTATTCGAGACCCTTATGGCATTACCAGCCTTTCATCTACTCAGTACTATAGACTCACCCTTTACGATCCGGAAAGGGGATTTTGGTACGATTTGCCGCCGATACCGGAGTTGATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGGTCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGGCGGATATGCCGGGAGGACAGAGGCTGTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTATGACGTGGCGGAAGACGAGTGGGTTACTCTGCCGGAAATGGCCATGGAGCGTGACGAGTGCAAGTGCGCATTTTACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCCTGCACAAGGTCAATTCCAGCGCAGCGCTGAGGTGTTCAACTCCGCCACGTCAAGGGAGTGGCGCCTGGAGGAGGACTTCCTCGGTGCCGCCACGTGTCCCCAGACCTGCGTGGAAGGCGGC</genome_strand>
        <mrna_strand>TCTACATATATATGTACACACACAGTAGCCCAATTTGTTAATTTCTTCCATCTTTTTCTTCATGGATCTTCTTCCGGGTCTTCCTAATGATATTGCTCTTGAATGTCTCATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCAAAAACTGGAAAAAAGAAATCAAGCATCCCCTCTTTCGACAACGACGGAAAGAATCGGGTCTTACCCGACCCGTTATCGTATTATCCCAAGCCATGGTTACTACTATTCGAGACCCTTATGGCATTACCAGCCTTTCATCTACTCAGTACTATAGACTCACCCTTTACGATCCGGAAAGGGGATTTTGGTACGATTTGCCGCCGATACCGGAGTTGATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGGTCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGGCGGATATGCCGGGAGGACAGAGGCTGTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTATGACGTGGCGGAAGACGAGTGGGTTACTCTGCCGGAAATGGCCATGGAGCGTGACGAGTGCAAGTGCGCATTTTACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCCTGCACAAGGTCAATTCCAGCGCAGCGCTGAGGTGTTCAACTCCGCCACGTCAAGGGAGTGGCGCCTGGAGGAGGACTTCCTCGGTGCCGCCACGTGTCCCCAGACCTGCGTGGAAAGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429640" ref_strand="+" ref_description="SGN-E429640 [STM-52-K20]">
      <seq>gtcttcctaatgatattgctcttgaatgtctaattcgtcttcctctccatcaattctctaaagctgcttctgtatgcaccaactggaaaaccgagatcaagcatcccctgtttcgacaacgtcggaaagaatcgggtcttacccgacccgttttcgtattagcccaagccatggttactaccattcgaaaaccttatggcattaccagcctttcatctactcagttctacagactcaccctttatgatccggaaaggggatgttggtacgatttgccgccgataccggagttaattgatggattgcccatgttttgccgggttgtaggagtcggatcggatgtaatggtgataggcgggtgtgacccggttaattggagggttatggactctgttttcatctacaatttcgtatccggttcgtggcgtcgtgggacggatatgccgggaggacagaggcttttttttggatgtgcgtcggattcggagagatttgtggttgtcgccggcggacataacgacgagaagaatgcgctgagatcggctctgttgtacgacgtggcggaagatgagtggattacgctgccggaaatggcctttgagcgtgacgagtgcaagtgcgcatttcaccgcggtgaattccacgtcatcggaggctatcctacgcatgcacaaggtcaattccatcgcagcgctgaggtattcaactccgacacgtcccggcagtggcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10135" stop="8803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9835" g_stop="9103" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E429640" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9835" e_stop="9103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCTAATGATATTGCTCTTGAATGTCTCATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCAAAAACTGGAAAAAAGAAATCAAGCATCCCCTCTTTCGACAACGACGGAAAGAATCGGGTCTTACCCGACCCGTTATCGTATTATCCCAAGCCATGGTTACTACTATTCGAGACCCTTATGGCATTACCAGCCTTTCATCTACTCAGTACTATAGACTCACCCTTTACGATCCGGAAAGGGGATTTTGGTACGATTTGCCGCCGATACCGGAGTTGATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGGTCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGGCGGATATGCCGGGAGGACAGAGGCTGTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTATGACGTGGCGGAAGACGAGTGGGTTACTCTGCCGGAAATGGCCATGGAGCGTGACGAGTGCAAGTGCGCATTTTACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCCTGCACAAGGTCAATTCCAGCGCAGCGCTGAGGTGTTCAACTCCGCCACGTCAAGGGAGTGGCGCCT</genome_strand>
        <mrna_strand>GTCTTCCTAATGATATTGCTCTTGAATGTCTAATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCACCAACTGGAAAACCGAGATCAAGCATCCCCTGTTTCGACAACGTCGGAAAGAATCGGGTCTTACCCGACCCGTTTTCGTATTAGCCCAAGCCATGGTTACTACCATTCGAAAACCTTATGGCATTACCAGCCTTTCATCTACTCAGTTCTACAGACTCACCCTTTATGATCCGGAAAGGGGATGTTGGTACGATTTGCCGCCGATACCGGAGTTAATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGATCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGACGGATATGCCGGGAGGACAGAGGCTTTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTACGACGTGGCGGAAGATGAGTGGATTACGCTGCCGGAAATGGCCTTTGAGCGTGACGAGTGCAAGTGCGCATTTCACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCATGCACAAGGTCAATTCCATCGCAGCGCTGAGGTATTCAACTCCGACACGTCCCGGCAGTGGCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457655" ref_strand="+" ref_description="SGN-E457655 [cPRO-3-G14]">
      <seq>gtcttcctaatgatattgctcttgaatgtctaattcgtcttcctctccatcaattctctaaagctgcttctgtatgcaccaactggaaaaccgagatcaagcatcccctgtttcgacaacgtcggaaagaatcgggtcttacccgacccgttttcgtattagcccaagccatggttactaccattcgaaaaccttatggcattaccagcctttcatctactcagttctacagactcaccctttatgatccggaaaggggatgttggtacgatttgccgccgataccggagttaattgatggattgcccatgttttgccgggttgtaggagtcggatcggatgtaatggtgataggcgggtgtgacccggttaattggagggttatggactctgttttcatctacaatttcgtatccggttcgtggcgtcgtgggacggatatgccgggaggacagaggcttttttttggatgtgcgtcggattcggagagatttgtggttgtcgccggcggacataacgacgagaagaatgcgctgagatcggctctgttgtacgacgtggcggaagatgagtggattacgctgccggaaatggcctttgagcgtgacgagtgcaagtgcgcatttcaccgcggtgaattccacgtcatcggaggctatcctacgcatgcacaaggtcaattccatcgcagcgctgaggtattcaactccgacacgtcccggcagtggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10135" stop="8805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9835" g_stop="9105" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E457655" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9835" e_stop="9105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCTAATGATATTGCTCTTGAATGTCTCATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCAAAAACTGGAAAAAAGAAATCAAGCATCCCCTCTTTCGACAACGACGGAAAGAATCGGGTCTTACCCGACCCGTTATCGTATTATCCCAAGCCATGGTTACTACTATTCGAGACCCTTATGGCATTACCAGCCTTTCATCTACTCAGTACTATAGACTCACCCTTTACGATCCGGAAAGGGGATTTTGGTACGATTTGCCGCCGATACCGGAGTTGATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGGTCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGGCGGATATGCCGGGAGGACAGAGGCTGTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTATGACGTGGCGGAAGACGAGTGGGTTACTCTGCCGGAAATGGCCATGGAGCGTGACGAGTGCAAGTGCGCATTTTACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCCTGCACAAGGTCAATTCCAGCGCAGCGCTGAGGTGTTCAACTCCGCCACGTCAAGGGAGTGGCGC</genome_strand>
        <mrna_strand>GTCTTCCTAATGATATTGCTCTTGAATGTCTAATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCACCAACTGGAAAACCGAGATCAAGCATCCCCTGTTTCGACAACGTCGGAAAGAATCGGGTCTTACCCGACCCGTTTTCGTATTAGCCCAAGCCATGGTTACTACCATTCGAAAACCTTATGGCATTACCAGCCTTTCATCTACTCAGTTCTACAGACTCACCCTTTATGATCCGGAAAGGGGATGTTGGTACGATTTGCCGCCGATACCGGAGTTAATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGATCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGACGGATATGCCGGGAGGACAGAGGCTTTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTACGACGTGGCGGAAGATGAGTGGATTACGCTGCCGGAAATGGCCTTTGAGCGTGACGAGTGCAAGTGCGCATTTCACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCATGCACAAGGTCAATTCCATCGCAGCGCTGAGGTATTCAACTCCGACACGTCCCGGCAGTGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746692" ref_strand="+" ref_description="SGN-E746692 [GI|51477444]">
      <seq>gattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttagctttctggatcttgtcccatgcttcagttttataaacaaatgtagcgtaatgtacccgaggtaggtttataacattgtgagccttgaattattatctttaatttgttgagcgctgttggtccatatattgattatcccaagagcaaatgacttcacagtgcttcagacacttttgttgacctgttaattgaggaaactacaaggccaacctgtaacagcgaagggctctgttttgtttctgtgttactgacttactgtatcatatttgttagttgttcatgtttgtgcatttttgatatggaaaagtggtccttttggctccagactccaatggccagaatagtgccgtcggcaacaaattataaaagtttttactaagtttatctagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17758" stop="13027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17458" g_stop="17434" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="111" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="196" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="304" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13858" g_stop="13328" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="835" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="836" polyA_stop="854"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E746692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17458" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACCTGTAACAGCGAAGGGCTCTGTTTTGTTTCTGTGTTACTGACTTACTGTATCATATTTGTTAGTTGTTCATGTTTGTGCATTTTTGATATGGAAAAGTGGTCCTTTTGGCTCCAGACTCCAATGGCCAGAATAGTGCCGTCGGCAACAAATTATAAAAGTTTTTACTAAGTTTATCTAGT</genome_strand>
        <mrna_strand>GATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACCTGTAACAGCGAAGGGCTCTGTTTTGTTTCTGTGTTACTGACTTACTGTATCATATTTGTTAGTTGTTCATGTTTGTGCATTTTTGATATGGAAAAGTGGTCCTTTTGGCTCCAGACTCCAATGGCCAGAATAGTGCCGTCGGCAACAAATTATAAAAGTTTTTACTAAGTTTATCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351373" ref_strand="+" ref_description="SGN-E351373 [cTOS-12-G6]">
      <seq>gactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttagctttctggatcttgtcccatgcttcagttttataaacaaatgtagcgtaatgtacccgaggtaggtttataacattgtgagccttgaattattatctttaatttgttgagcgctgttggtccatatattgattatcccaagagcaaatgacttcacagtgcttcagacacttttgttgacctgttaattgaggaaactacaaggccaacctgtaacagcgaagggctctgttttgtttctgtgttactgacttactgtatcatatttgttagttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14084" stop="13138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13784" g_stop="13439" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="356"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E351373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13784" e_stop="13439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACCTGTAACAGCGAAGGGCTCTGTTTTGTTTCTGTGTTACTGACTTACTGTATCATATTTGTTAGTTGTTC</genome_strand>
        <mrna_strand>GACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACCTGTAACAGCGAAGGGCTCTGTTTTGTTTCTGTGTTACTGACTTACTGTATCATATTTGTTAGTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426595" ref_strand="-" ref_description="SGN-E426595 [STM-46-H10]">
      <seq>caaagacttaaatagtgatcaattgaactcagttgcagttgaagttccttctagagacgtgagatctaaatttcctgagatgagccctcagcatcacacccaggcaaaagataagcaacagaaagcaaagaaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggtacatcatttgaaagtggggttagacgaagcaaacgaatgaagactaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccaggaaagggatcatttaaggtgaagtcttacatccctgatgactacaaagacctagttgatttagcagctcgctattgattttctaacagcattgatggatgggttagctttctggatcttgtcccatgcttcagttttaaatataagtgtagccattgtatgtaatgtacccgaggtagatttaaaacattgtgaaccttgatttatcatctttcatttgttgagcgctgttggtccatctactgattatcccaagagcaaataactccacagtgcttcagacactttagttgacttgttaatggtagagaggaaactacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17750" stop="13223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17450" g_stop="17434" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="103" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="188" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="296" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13858" g_stop="13507" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="655" r_length="359" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E426595" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426595" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17450" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAG-C-------GTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACC</genome_strand>
        <mrna_strand>CAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTTGCAGTTGAAGTTCCTTCTAGAGACGTGAGATCTAAATTTCCTGAGATGAGCCCTCAGCATCACACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGAAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGTACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACTAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCAGGAAAGGGATCATTTAAGGTGAAGTCTTACATCCCTGATGACTACAAAGACCTAGTTGATTTAGCAGCTCGCTATTGATTTTCTAACAGCATTGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTAAATATAAGTGTAGCCATTGTATGTAATGTACCCGAGGTAGATTTAAAACATTGTGAACCTTGATTTATCATCTTTCATTTGTTGAGCGCTGTTGGTCCATCTACTGATTATCCCAAGAGCAAATAACTCCACAGTGCTTCAGACACTTTAGTTGACTTGTTAATGGTAGAGAGGA-AACTACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624232" ref_strand="+" ref_description="SGN-E624232 [GI|51492778]">
      <seq>tgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccatagccttgccggactttctctactcccaacaacagttagggtttccaccgacgcctctgtatcagttaaccccaaagacctagagttaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggccagggaaattgtggataatggtgcggagcttttgaataccaagtttacaagttttatactatctaaaggcattgatggggatcttgcaatgaagggaaaggagaagctccaggagagaagaccaggacttgggcgtaaaagggctcgattttctctcaagcctcctagtacaagtcaacctactgtcagcgtagctcctcgtttagatattgatcaactgtcagatccagtggaatttttctcagttgctgaaaagctagaagatgctgagaaggaaatagaaagacagaaaggtagcagtatccatgatccagatgtgaataatccacccgccaatgcacggcgtcgtcgaccaggcatcttgggcaaatcggtgaagtataagcaccgtttctcatccacccagcctgagaatgatgatgcatttatatcatctcaggaaacattggaggatgatattctggtggaacatggttctcagttgccagaagagcttcatggcctcaatgttgaactacaagaagcagaactcacagggtcagtaaagaaaacagaaaacagaataaacaagattctggatgaattactgtccggtagtgatgaagatctagaccgggacatggcagtatccaaattgcaagagcggctgcagatcaatcccattgaactaggcactttatgtattcctgagtttcctgtgactggaaagcttgatggtaaggcttttggagagaggattcagaagcctaggaagttttcattggaggtacgggagttggttaaaagtgcaaccgagggaacaccttcctctcacaaacagcatgaggaaagtcctgccagtaaattagcatcacccactccaccaaaaagtccatttggttcattgtctttgttgaaaaagaaacttatgcagtcaaatccactgagagatcctttttcgcctctcaacattgatcttcagttttaaatataagtgtagccattgtatgtaatgtacccgaggtagatttaaaacattgtgaaccttgatttatcatctttcatttgttgagcgctgttggtccatctactgattatcccaagagcaaataactccacagtgcttcagacactttagttgacttgttaatgttaattgaggaaactacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20291" stop="13215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19991" g_stop="19810" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="388" r_length="206" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.782" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="477" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18943" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="580" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18942" i_stop="18837" i_length="106">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18836" g_stop="18667" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="750" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18666" i_stop="18553" i_length="114">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18552" g_stop="18131" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="1172" r_length="422" r_score="0.936"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18130" i_stop="17519" i_length="612">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17518" g_stop="17505" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1173" r_stop="1185" r_length="13" r_score="0.786"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17504" i_stop="14438" i_length="3067">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.552" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14437" g_stop="14430" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1186" r_stop="1193" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14429" i_stop="13681" i_length="749">
            <donor d_prob="0.774" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13680" g_stop="13531" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1194" r_stop="1342" r_length="149" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1361" polyA_stop="1381"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E624232" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1341</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19991" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18943"/>
          <exon e_start="18836" e_stop="18667"/>
          <exon e_start="18552" e_stop="18131"/>
          <exon e_start="17518" e_stop="17505"/>
          <exon e_start="14437" e_stop="14430"/>
          <exon e_start="13680" e_stop="13531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAG---CCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGGGTACACCTAGATACTCTTTGTTTTTTTACATGGAAATGCCTGTCCTACCTTTATCGTCCTCTCAACTTGTTGTTGCACCTTTTTAGAGTTCTCTTTTCTGTCTCAGCAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCTCAAGAGACATTGGAGGATGATATTCTGGTGGAACATGGTTCTCAGTTGCCAGAAGAGCTCCATGGCCTCAATGTTGAACTACAAGAAGCAGAACTCACAGGTTATTGGGTTTAACTAATCAAGATAGATACCTTCTGATTTCTAGATTATATTTTTAACTTCTCTATGAGCAGAATGTCATTTCAGAAGTGATAATTGCTTTCCAATTCAACAGGGCCAATAAAGAAATCAGAAAACAGAATCAACAAGATACTGGATGAATTACTGTCTGGTAGTGGTGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCAGTTGAAGATCAAGCCCATTGAACTAGGAACTTTATGTATTCCTGAGTTCCCTGTGACTGGAAAGTTTGATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAAAGAATCCAGGCAGAGATAGTGTAAAAACTGGGCCAAATGGATCTCGATCTGGAATGGAGCAACATAATGGCTATGATGATATTGATGCCAATACTAACGACAACTTAAATATGAGAAATGTGGATTCCCACCATGAGTCTGATGGGCTTGACAAAGTGAAAGATGATTCAGTTATAAAGAATGTTTTGAAGGCTCTACAAGGTCTTGAGACCAAATCCTACATTGACTGTCAAAAGCTGCAGGATAGTGAAGTTCTTGCTGAAACACTACCTTCTCTTCAAGCCCAAGGAAAAGCTGTCGATACAGCCAATTATACCATAGAAACAGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTA</genome_strand>
        <mrna_strand>TGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCATAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGACGCCTCTGTATCAGTTAACCCCAAAGACCTAGAGTTAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCCAGGGAAATTGTGGATAATGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTTATACTATCTAAAGGCATTGATGGGGATCTTGCAATGAAGGGAAAGGAGAAGCTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCTCTCAAGCCTCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCGTAGCTCCTCGTTTAGATATTGATCAACTGTCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................ATGCTGAGAAGGAAATAGAAAGACAGAAAGGTAGCAGTATCCATGATCCAGATGTGAATAATCCACCCGCCAATGCACGGCGTCGTCGACCAGGCATCTTGGG..........................................................................................................CAAATCGGTGAAGTATAAGCACCGTTTCTCATCCACCCAGCCTGAGAATGATGATGCATTTATATCATCTCAGGAAACATTGGAGGATGATATTCTGGTGGAACATGGTTCTCAGTTGCCAGAAGAGCTTCATGGCCTCAATGTTGAACTACAAGAAGCAGAACTCACAG..................................................................................................................GGTCAGTAAAGAAAACAGAAAACAGAATAAACAAGATTCTGGATGAATTACTGTCCGGTAGTGATGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCGGCTGCAGATCAATCCCATTGAACTAGGCACTTTATGTATTCCTGAGTTTCCTGTGACTGGAAAGCTTGATGGTAAGGCTTTTGGAGAGAGGATTCAGAAGCCTAGGAAGTTTTCATTGGAGGTACGGGAGTTGGTTAAAAGTGCAACCGAGGGAACACCTTCCTCTCACAAACAGCATGAGGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTA-AATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGTA-TGTAATGTACCCGAGGTAGATTTAAAACATTGTGAACCTTGATTTATCATCTTTCATTTGTTGAGCGCTGTTGGTCCATCTACTGATTATCCCAAGAGCAAATAACTCCACAGTGCTTCAGACACTTTAGTTGACTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415061" ref_strand="-" ref_description="SGN-E415061 [STM-20-N17]">
      <seq>cagttgccagaagaggttcatggcctcaatgttgaactacaagaagcagaactcacagggtcagtaaagaaaacagaaaacagaataancaagattctggatgaattactgtccggtagtgatgaagatctagaccgggacatggcagtatccaaattgcaagagcggctgcagatcaatcccattgaactaggcactttatgtattcctgagtttcctgtgactggaaagcttgatggtaaggcttttggagagaggattcagaagcctaggaagttttcattggaggtacgggagttggttaaaagtgcaaccgagggaacaccttcctctcacaaacagcatgaggaaagtcctgccagtaaattagcatcacccactccaccaaaaagtccatttggttcattgtctttgttgaaaaagaaacttatgcagtcaaatccactgagagatcctttttcgcctctcaacattgatcttcagttttaaatataagtgtagccattgtatgtaatgtacccgaggtagatttaaaacattgtgaaccttgatttatcatctttcatttgttgagcgctgttggtccatctactgattatcccaagagcaaataactccacagtgcttcagacactttagttgacttgttaatgttaattgaggaaactacaaaaaaaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="19024" stop="13215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18724" g_stop="18667" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18666" i_stop="18553" i_length="114">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18552" g_stop="18131" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="480" r_length="422" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18130" i_stop="17519" i_length="612">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17518" g_stop="17505" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="493" r_length="13" r_score="0.786"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17504" i_stop="14438" i_length="3067">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.552" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14437" g_stop="14430" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="501" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14429" i_stop="13681" i_length="749">
            <donor d_prob="0.774" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13680" g_stop="13531" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="650" r_length="149" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="679"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E415061" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415061" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18724" e_stop="18667"/>
          <exon e_start="18552" e_stop="18131"/>
          <exon e_start="17518" e_stop="17505"/>
          <exon e_start="14437" e_stop="14430"/>
          <exon e_start="13680" e_stop="13531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGCCAGAAGAGCTCCATGGCCTCAATGTTGAACTACAAGAAGCAGAACTCACAGGTTATTGGGTTTAACTAATCAAGATAGATACCTTCTGATTTCTAGATTATATTTTTAACTTCTCTATGAGCAGAATGTCATTTCAGAAGTGATAATTGCTTTCCAATTCAACAGGGCCAATAAAGAAATCAGAAAACAGAATCAACAAGATACTGGATGAATTACTGTCTGGTAGTGGTGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCAGTTGAAGATCAAGCCCATTGAACTAGGAACTTTATGTATTCCTGAGTTCCCTGTGACTGGAAAGTTTGATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAAAGAATCCAGGCAGAGATAGTGTAAAAACTGGGCCAAATGGATCTCGATCTGGAATGGAGCAACATAATGGCTATGATGATATTGATGCCAATACTAACGACAACTTAAATATGAGAAATGTGGATTCCCACCATGAGTCTGATGGGCTTGACAAAGTGAAAGATGATTCAGTTATAAAGAATGTTTTGAAGGCTCTACAAGGTCTTGAGACCAAATCCTACATTGACTGTCAAAAGCTGCAGGATAGTGAAGTTCTTGCTGAAACACTACCTTCTCTTCAAGCCCAAGGAAAAGCTGTCGATACAGCCAATTATACCATAGAAACAGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTA</genome_strand>
        <mrna_strand>CAGTTGCCAGAAGAGGTTCATGGCCTCAATGTTGAACTACAAGAAGCAGAACTCACAG..................................................................................................................GGTCAGTAAAGAAAACAGAAAACAGAATAANCAAGATTCTGGATGAATTACTGTCCGGTAGTGATGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCGGCTGCAGATCAATCCCATTGAACTAGGCACTTTATGTATTCCTGAGTTTCCTGTGACTGGAAAGCTTGATGGTAAGGCTTTTGGAGAGAGGATTCAGAAGCCTAGGAAGTTTTCATTGGAGGTACGGGAGTTGGTTAAAAGTGCAACCGAGGGAACACCTTCCTCTCACAAACAGCATGAGGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTA-AATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGTA-TGTAATGTACCCGAGGTAGATTTAAAACATTGTGAACCTTGATTTATCATCTTTCATTTGTTGAGCGCTGTTGGTCCATCTACTGATTATCCCAAGAGCAAATAACTCCACAGTGCTTCAGACACTTTAGTTGACTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550569" ref_strand="+" ref_description="SGN-E550569 [TUS-6-A4](-)">
      <seq>gcagaacaagatcattactttgaggattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacttaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttagctttctggatcttgtcccatgcttcagttttataaacaaatgtagcgtaatgtacccgaggtaggtttataacattgtgagccttgaattattatctttaatttgttgagcgctgtgggaccatatattgatatcccaagagcagagacttcacagtgctcagacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17782" stop="13246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17482" g_stop="17434" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="135" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="220" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="328" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13858" g_stop="13546" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="638" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E550569" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17482" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACT</genome_strand>
        <mrna_strand>GCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACTTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTGGGACCATATATTGA-TATCCCAAGAGCAGA-GACTTCACAGTGC-TCAGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398532" ref_strand="+" ref_description="SGN-E398532 [TUS-18-J23]">
      <seq>agctgttgaggattttggatcaactgaaattgatccgctggttgacaatatgctaccagaaacagcgccttctgcagaacaagatcattactttgaggattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttagctttctggatcttgtcccatgcttcagttttataaacaaatgtaccgtaatgtacccaaggtagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17957" stop="13352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17657" g_stop="17618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17434" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="122" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="208" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="293" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="401" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13858" g_stop="13652" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="608" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E398532" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17657" e_stop="17618"/>
          <exon e_start="17515" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGG</genome_strand>
        <mrna_strand>AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG......................................................................................................GTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTACCGTAATGTACCCAAGGTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315073" ref_strand="+" ref_description="SGN-E315073 [cTOB-4-K16]">
      <seq>ttctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttagctttctggatcttgtcccatgcttcagttttataaacaaatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17756" stop="13371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17456" g_stop="17434" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="109" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="194" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="302" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13858" g_stop="13671" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="490" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E315073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17456" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGC</genome_strand>
        <mrna_strand>TTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393803" ref_strand="+" ref_description="SGN-E393803 [TUS-14-I23]">
      <seq>agctgttgaggattttggatcaactgaaattgatccgctggttgacaatatgctacccgaaacagcgccttctgcagaacaacatcattactttgaggattccgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcaccatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcacctcgctattgattttctaacagcatcgatggatgggttaactttctggatcttgtcccatgcttcagttttataaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17957" stop="13377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17657" g_stop="17618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17434" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="122" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="208" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="293" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="401" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13858" g_stop="13677" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="583" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E393803" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17657" e_stop="17618"/>
          <exon e_start="17515" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAA</genome_strand>
        <mrna_strand>AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG......................................................................................................GTTGACAATATGCTACCCGAAACAGCGCCTTCTGCAGAACAACATCATTACTTTGAGGATTCCGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCACCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCACCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAACTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231565" ref_strand="+" ref_description="SGN-E231565 [cLED-4-D10]">
      <seq>gctgttgaggattttggatcaactgaaattgatccgctggttgacaatatgctaccagaaacagcgccttctgcagaacaagatcattactttgaggattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggatcatttaaggtgaagtcttacattcctgatgactacaaagacctagttgatttggcagctcgctattgattttctaacagcatcgatggatgggttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17956" stop="13417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17656" g_stop="17618" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17434" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="207" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="292" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13858" g_stop="13717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="542" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E231565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17656" e_stop="17618"/>
          <exon e_start="17515" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAG</genome_strand>
        <mrna_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG......................................................................................................GTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228384" ref_strand="+" ref_description="SGN-E228384 [cLED-3-B4]">
      <seq>gctgttgaggattttggatcaactgaaattgatccgctggttgacaatatgctaccagaaacagcgccttctgcagaacaagatcattactttgaggattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatctctccgggaaagggaacatttaaggtgaagtcttacattcctgatgactacaaagacctagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17956" stop="13467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17656" g_stop="17618" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17434" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="207" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="292" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13858" g_stop="13767" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="492" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E228384" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17656" e_stop="17618"/>
          <exon e_start="17515" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTT</genome_strand>
        <mrna_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG......................................................................................................GTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGAACATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241544" ref_strand="+" ref_description="SGN-E241544 [cLED-28-J8]">
      <seq>gctgttgaggattttggatcaactgaaattgatccgctggttgacaatatgctaccagaaacagcgccttctgcagaacaagatcattactttgaggattctgtcaaagacttaaatagtgatcaattgaactcagtgggagttgaagttccttctagagacgtgagacctaaatttccggagatgagccctcagcatcacaagcaggcaaaagataagcaacagaaagcaaaggaacttgctgttggaaggcgtgaaagaaaacatctttcttctaggccaagtctagcagatgctggcacatcatttgaaagtggggttagacgaagcaaacgaatgaagacaaggcctttggaatattggaaaggcgaaagattattatatggacgggttgatgagggtttgaagcttgttggcttgaaatacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="17956" stop="13529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17656" g_stop="17618" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17434" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16159" g_stop="16074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="207" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15251" g_stop="15167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="292" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15082" g_stop="14975" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13858" g_stop="13829" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="430" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E241544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17656" e_stop="17618"/>
          <exon e_start="17515" e_stop="17434"/>
          <exon e_start="16159" e_stop="16074"/>
          <exon e_start="15251" e_stop="15167"/>
          <exon e_start="15082" e_stop="14975"/>
          <exon e_start="13858" e_stop="13829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGCAAGTCTATCCACTTCTTACTATTATATGCTGCATTTGATACATTATTCCAGGAGTTATAATTCAAACTGTGACATTTTTTCATTCATACGTCATTAGCAGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTGGTGAGATTCTATTTTGGATGATTTTTTTTATGCCAAGTCATCATTTATGAAGATGCGACATTTGAGCATTGTCTATTTCTTGCTAGATTCTTTTGTATACACAAATTTTTGTACGTATTCAAAACAATCTTTTTTATGTTTTAACACATCGCTTGAGTTTTACCCGGAATCATCTGCAGTCAACTATTCGTTTTTTGACCACTTATATTCAACTCTTAACTGGGTGATTCATGGTACTGGAACTGGACAATTCTTAGGTCTGCTACAGGCTATAGATTAAGGTGTGAAGTGCTGGAATTTAGTATACGAAGAAGTAACTGCCCATGTTTGCCAGAAATTGTACTGCAATAGACCAATACCTTGGTTGCTTGGAATGTTCTGTCATAACTTCTCTTTCCTTTTCCTTTTCATCTCTGGTTTTTTAATGGGAGGATGCATGTGATGCATCTTTATAAAAAATAGATGTGTAGAATTTTGAACTTGTAGTTGTCAAGAATCATGACTTTTGATCTTCATTTTTTTTAAAAAAGGTAATGACTCAATTGAGAAGATGGGGATAACGCTCTATCATTGTATACCATATTGAAAACCTTACAAAAGATATGGTTCTCAGCAAAAACACATGCATCACTATTTATCATGATGTTTTAAGTACTCCAAAAGTAACAAGATTTGTCTAATATGTTTGAACTTCACTTCTATCTTTCGAGCATCCTGTTAGGTACTAGATATAAATTAACGAGACGTAAGTTTGTACTGGTACATGCAAGTTATTGCTGCATTCTGATGTTCTATTGTGGTTATAGGAGCATTAAGGTGTCTATAGTGTCACGAGCAAAGCATTAGGGATGATTAATCATTAAAGTAACCCATGTACTGATAGCAAAAGATCATATGCCACATATTGATACCTATTGCGTAGTCACAAACTCAACCCTGCTCTTCAGAGTCAGAAGGCGCTTCCACTTAACCCAGTTTATAATTGGTTACTTGCTTTACTTTCTTTTATTTATAAAGTAATATGCTACCTCCAAATATGAACTTCAGCTGCTGAAATCATTCTCACATTGATCACCTTCTCTTTTGCAATGGTTCTTTGAGCTTGTGTCACTCTTTACATTATAAAGTTGTCATAGTACCTGTGCATTCTGAATATATGTTGTTTTTCTTGAACATATAGCTAGTTATTTTACCCACTCTACTTTGCATATCTTAACTAGTAATAACAGTCTAAAGTTTGGAAAGAACTTGAGAACCTTGGTATCTTTATACAGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAGGTTGCCTCCTTTCTTGAATGGTCCTTCATTATTTTTTATTTATATAGGAAACTCAAAGTGCCAAGTTAATCCTTTGGTATTCACACACACACATACACACTCTCTCTCTCTCTCTCCCAAAAGCAAATAATGATGGCAGGGTTTAAGGGGTCAAAATACTTGCGACATACAAAAGCCTGGTATTTGAGTGGAGAAGTGAGCACAATGTCCAAAATTTATGCTCCATACAGTTTCAAACCATTTGCCATTGGTCCTCAGAGTTTTTCGGATCGAAAACAATTATTGTTAAAGAGTCTACAATATCAAAGTCAGTAAAAATCGTCTGATTCTCCAATTGTAACTGTAAATTAGAAGACAGTAAAGCTGATTGCTTGTATGTAAACAAATCTGTAGATGCCTAAACACTAGGATAGGGTTTGTGCAAAAACATATCGCAATTCCCAAATTTAAAAAAAAACTAGCATGAACTGCGTTTGATAACCATGATTATTTTTTTGTTCTTTTGAAAAAAGTGCAATGATGTGACTGATTTAAGTTGCCAAATGTGTTGATTTCTGTCTAGGGTTAGGACATTTTAAAGCTGTCTACTGAAATGACCCTCTGATATTATTGGTGTTAAAATTTGACAACCAGTCTGTATAAGAGTCGATATTTCTGACGTGACAGTGGATATTGAATGATATTGATTGAACACATTAATAGTTTTAGCCCATCATGTCTCCTAATTTTGGGTTTACATGTGAATGCTTGTGCTCTTTGCAGTTGTATTTCTTTACCTGTATTGGTTATACTGATTGACATGCAATATTTCTGATGCATTAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAGGTTTTTACTCTTGCGACTATGGGGATGTCTTCATTTGAAGTCTTTCATTTGTGTTTTTGATAAAGAATTTCATGAATTTGACAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGGGTGAGTATTGTCTTGTAAATTCTTGTGTTGTTACTTTGCTGGGTTTCTGTTGGATTCATTTGTTAGACTTGGGTGATAGGGTAATAATTCATCTTGATCCTCAAATCTAGTTTTTCTTTTTTTGGCGCGTGCGTGTGAGAGAGAGATGTGTGAAACTAGGCCACAACATGCTAGACTTTATACTTATAGTCTTGGGAAGGTAACTACTCAAGGATATTTTCTTGTCCTTTAGATAGGATGTTTATCACACTAAACGACCTAATATTGGAGAGGTTGGTGGTAACATATGCACATTTTGCATAGAACTCTACAAGACAGCGAAAGAAAATATTAGGGACGGCTTAGCTATTAGAGAAGCATGGTAACTAGGTTACTTGCATGTCTGCTAAGAGAGTGCAAGTTAGGGTATCAGAATCTAGTTTTCAGGGATTAGTTTCGTACTTGGTCAAGTCTCTTCCAGCAGGAGATTAACTTAGTTAAGGCTCTCCTAGTTGGTGACTTACTAGCTCAGAATACTCATTGGAACTTGAATTACAGGAAATTAGGTAATTTGATCCTCAATATTTTTGTGCTTGAAAATCATCACCGAGATAATGTAGTAGACTTATTTCCTAAATCAGCCAACATGCTGAATTCCATAAATTGTCAAGCACAAAATTGAAGTAATTTTTGAAAACTAATCATTTCAATTTTGGATATTTCACTTAAGGGATGCCTTTAGTTACTTTGGCAAGTTTATTCTAGTTGAGCACTCTCTTATAGAAAGTAGAAACTTGAGCCATAGGAACTTAGGTAGTTTAACCCATCATATTTTCTTGCTTGAAAATTTATCATTGAGATAATAGATCAGACGTAGTTCATATATCATCCAACTTGCTGAATTCCATAAATGGTCAACAAAAATTAAAGTAATTCGAAAGTGATTGTTTCAGTGTAGAAGCAAATTGCAGCCAACATTGAGTAGCAGCTTTTGGATATTACTTCTATCGTAACTAGCAATTCAATACATTAAAGCATATGCTAAACACAATGAACTTATCTTTTCGACTGGTTGTTTCTATGTTTAACCTGTGGAGAAAACAACAGATTTAGTATATCCGTGTGTTTCTGTTGCAGGTTTGAAGCTTGTTGGCTTGAAATACATCT</genome_strand>
        <mrna_strand>GCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG......................................................................................................GTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG....................................................................................ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGCTTGTTGGCTTGAAATACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244614" ref_strand="+" ref_description="SGN-E244614 [cLED-38-H20]">
      <seq>gatggtaaggctcttggagagagaattcagaagcctagtaagttttttttggagatagcggagttggttaaaagtgcaactgagggaacgccatcctctcacaaacagcatgaagaaagtcctgccagtaaattagcatcacccactccaccaaaaagtccatttggttcattgtctttgttgaaaaagaaacttatgcagtcaaatccactgagagatcctttttcgcctctcaacattgatctgcaatcagagcatccagattggtccgcgaagaagaaatcacaatgtgtaaataataatgttggacctattgaatctcgtggttgtgaaaatacaaatattatggtccctttaagaggttcagacttagtgcatgagcaaccaattgaaaagaatccaggcagagatagtgtaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18676" stop="17654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18376" g_stop="17954" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E244614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18376" e_stop="17954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAAAGAATCCAGGCAGAGATAGTGTAAAAACT</genome_strand>
        <mrna_strand>GATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAAAGAATCCAGGCAGAGATAGTGTAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483063" ref_strand="+" ref_description="SGN-E483063 [cSTE-7-H6]">
      <seq>cgggaagttggttaaaagtgcaaccgagggaacaccttccttctcacaaacagcatgaggaaagtcctgccagtaaattagcatcacccactccaccaaaaagtccatttggttcattgtctttgttgaaaaagaaacttatgcagtcaaatccactgagaagaatcctttttcgcctctcaacattgatcttcaatcagagcatccagattggtccgtgaagaagaaatcacaatgtgtaaataataatgttggccctactgaatctcgtggttgtgaaaatacgaatattatggtccctttaagaggttcagacttagtgcatgagcaactgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18617" stop="17683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18320" g_stop="17983" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E483063" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18320" e_stop="17983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCC-TCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAG-AG-ATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAA</genome_strand>
        <mrna_strand>CGGGAAGTTGGTTAAAAGTGCAACCGAGGGAACACCTTCCTTCTCACAAACAGCATGAGGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAAGAATCCTTTTTCGCCTCTCAACATTGATCTTCAATCAGAGCATCCAGATTGGTCCGTGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGCCCTACTGAATCTCGTGGTTGTGAAAATACGAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACTGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426594" ref_strand="+" ref_description="SGN-E426594 [STM-46-H10]">
      <seq>cagtaaagaaaacagaaaacagaataaacaagattctggatgaattactgtccggtagtgatgaagatctagaccgggacatggcagtatccaaattgcaagagcggctgcagatcaatcccattgaactaggcactttatgtattcctgagtttcctgtgactggaaagcttgatggtaaggcttttggagagaggattcagaagcctaggaagttttcattggaggtacgggagttggttaaaagtgcaaccgagggaacaccttcctctcacaaacagcatgaggaaagtcctgccagtaaattagcatcacccactccaccaaaaagtccatttggttcattgtctttgttgaaaaagaaacttatgcagtcaaatccactgagagatcctttttcgcctctcaacattgatcttcaatcagagcatccagattggtccgtgaagaagaaatcacaatgtgtaaataataatgttggccctactgaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18849" stop="17755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18549" g_stop="18055" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E426594" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18549" e_stop="18055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAGAAATCAGAAAACAGAATCAACAAGATACTGGATGAATTACTGTCTGGTAGTGGTGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCAGTTGAAGATCAAGCCCATTGAACTAGGAACTTTATGTATTCCTGAGTTCCCTGTGACTGGAAAGTTTGATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTC</genome_strand>
        <mrna_strand>CAGTAAAGAAAACAGAAAACAGAATAAACAAGATTCTGGATGAATTACTGTCCGGTAGTGATGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCGGCTGCAGATCAATCCCATTGAACTAGGCACTTTATGTATTCCTGAGTTTCCTGTGACTGGAAAGCTTGATGGTAAGGCTTTTGGAGAGAGGATTCAGAAGCCTAGGAAGTTTTCATTGGAGGTACGGGAGTTGGTTAAAAGTGCAACCGAGGGAACACCTTCCTCTCACAAACAGCATGAGGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTTCAATCAGAGCATCCAGATTGGTCCGTGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGCCCTACTGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446864" ref_strand="+" ref_description="SGN-E446864 [cSTA-23-E18]">
      <seq>gaaacttccaactcccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccatagccttgccggactttctctactcccaacaacagttagggtttccaccgacgcctctgtatcagttaaccccaaagacctagagttaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggccagggaaattgtggataatggtgcggagcttttgaataccaagtttacaagttttatactatctaaaggcattgatggggatcttgcaatgaagggaaaggagaagctccaggagagaagaccaggacttgggcgtaaaagggctcgattttctctcaagcctcctagtacaagtcaacctactgtcagcgtagctcctcgtttagatattgatcaactgtcagatccagtggaatttttctcagttgctgaaaagctagaagatgctgagaaggaaatagaaagacagaaaggtagcagtatccatgatccagatgtgaataatccacccgccaatgcacggcgtcgtcgaccaggcatcttgggcaaatcggtgaagtataagcaccgtttctcatccacccagcctgagaatgatgatgcatttatatcatctcaggaaacattggaggatgatattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20290" stop="18440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19990" g_stop="19810" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="388" r_length="206" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.782" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="477" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18943" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="580" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18942" i_stop="18837" i_length="106">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18836" g_stop="18740" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="677" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E446864" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19990" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18943"/>
          <exon e_start="18836" e_stop="18740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCAAC-CCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAG---CCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGGGTACACCTAGATACTCTTTGTTTTTTTACATGGAAATGCCTGTCCTACCTTTATCGTCCTCTCAACTTGTTGTTGCACCTTTTTAGAGTTCTCTTTTCTGTCTCAGCAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCTCAAGAGACATTGGAGGATGATATTCTG</genome_strand>
        <mrna_strand>GAAACTTCCAACTCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCATAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGACGCCTCTGTATCAGTTAACCCCAAAGACCTAGAGTTAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCCAGGGAAATTGTGGATAATGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTTATACTATCTAAAGGCATTGATGGGGATCTTGCAATGAAGGGAAAGGAGAAGCTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCTCTCAAGCCTCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCGTAGCTCCTCGTTTAGATATTGATCAACTGTCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................ATGCTGAGAAGGAAATAGAAAGACAGAAAGGTAGCAGTATCCATGATCCAGATGTGAATAATCCACCCGCCAATGCACGGCGTCGTCGACCAGGCATCTTGGG..........................................................................................................CAAATCGGTGAAGTATAAGCACCGTTTCTCATCCACCCAGCCTGAGAATGATGATGCATTTATATCATCTCAGGAAACATTGGAGGATGATATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719435" ref_strand="+" ref_description="SGN-E719435 [FC07DE02]">
      <seq>tcggccgaattcccatggggatccgactttaaaaattcgttctcgtccctctctcccgctcagtcccccttttcaaaattaaaataaagaaaaaataaggaaaatcatccgcttcacacatatggtgtgctctttctagttcctgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccacagccttgccggactttctctactcccaacaacagttagggtttccaccggcgcctcagtatcagtagactccaaagacctagagtcaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggctagggaaattgtggataacggtgcggagcttttgaataccaagtttacaagtttcatacgatctaaaggcattgatggggatcttgcaatcaagggaaaggagaaggtccaggagagaagaccaggacttgggcgtaaaagggctcgattttccctcaagcctagtacaagtcaacctactgtcagcatagctcctcgtttagatattgatcaactatcagatccagtggaatttttctcagttgctgaaaagctagaagttgctgagaaggaaatagaaagacagaaaggtggcagtatccatgatccagatgtgaataatcccccagccaatgctcggcgtcgtcgaccaggcatcttgggcaaatcggtgaagtataagcaccgtttctcatcctcccagcctgagaatgatgatgcatttatatcatctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20400" stop="18463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20100" g_stop="19810" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="325" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="528" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="617" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18943" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="720" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18942" i_stop="18837" i_length="106">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18836" g_stop="18763" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="794" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E719435" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20100" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18943"/>
          <exon e_start="18836" e_stop="18763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTTCTCGTCCCTCTCTCCCGCTCAGTCCCAATTTTCAAAATTAAAATAAAGAAAAAATAAGGAAAATCATCCGCTTCACACATATGGTGTGCTCTTTCTAGTTCCTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAGCCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGGGTACACCTAGATACTCTTTGTTTTTTTACATGGAAATGCCTGTCCTACCTTTATCGTCCTCTCAACTTGTTGTTGCACCTTTTTAGAGTTCTCTTTTCTGTCTCAGCAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCTCAAG</genome_strand>
        <mrna_strand>ATTCGTTCTCGTCCCTCTCTCCCGCTCAGTCCCCCTTTTCAAAATTAAAATAAAGAAAAAATAAGGAAAATCATCCGCTTCACACATATGGTGTGCTCTTTCTAGTTCCTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAGCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................TTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGG..........................................................................................................CAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316444" ref_strand="+" ref_description="SGN-E316444 [cTOA-25-F18]">
      <seq>tgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccacagccttgccggactttctctactcccaacaacagttagggtttccaccggcgcctcagtatcagtagactccaaagacctagagtcaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggctagggaaattgtggataacggtgcggagcttttgaataccaagtttacaagtttcatacgatctaaaggcattgatggggatcttgcaatcaagggaaaggagaaggtccaggagagaagaccaggacttgggcgtaaaagggctcgattttccctcaagcctagtacaagtcaacctactgtcagcatagctcctcgtttagatattgatcaactatcagatccagtggaatttttctcagttgctgaaaagctagaagttgctgagaaggaaatagaaagacagaaaggtggcagtatccatgatccagatgtgaataatcccccagccaatgctcggcgtcgtcgaacaggcatcttgggcaaatcggtgaagtataagcaccgtttctcatcctcccagcctgagaatgatgatgcatttatatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20291" stop="18467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19991" g_stop="19810" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="385" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="474" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18943" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="577" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18942" i_stop="18837" i_length="106">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18836" g_stop="18767" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="647" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E316444" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19991" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18943"/>
          <exon e_start="18836" e_stop="18767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAGCCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGGGTACACCTAGATACTCTTTGTTTTTTTACATGGAAATGCCTGTCCTACCTTTATCGTCCTCTCAACTTGTTGTTGCACCTTTTTAGAGTTCTCTTTTCTGTCTCAGCAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCT</genome_strand>
        <mrna_strand>TGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAGCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................TTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGAACAGGCATCTTGGG..........................................................................................................CAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415060" ref_strand="+" ref_description="SGN-E415060 [STM-20-N17]">
      <seq>ctgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccatagccttgccggactttctctactcccaacaacagttagggtttccaccgacgcctctgtatcagttaaccccaaagacctagagttaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggccagggaaattgtggataatggtgcggagcttttgaataccaagtttacaagttttatactatctaaaggcattgatggggatcttgcaatgaagggaaaggagaagctccaggagagaagaccaggacttgggcgtaaaagggctcgattttctctcaagcctcctagtacaagtcaacctactgtcagcgtagctcctcgtttagatattgatcaactgtcagatccagtggaatttttctcagttgctgaaaagctagaagatgctgagaaggaaatagaaagacagaaaggtagcagtatccatgatccagatgtgaataatccacccgccaatgcacggcgtcgtcgaccaggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20292" stop="18648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19992" g_stop="19810" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="389" r_length="206" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.782" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18948" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="576" r_length="98" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E415060" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19992" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAG---CCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATC</genome_strand>
        <mrna_strand>CTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCATAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGACGCCTCTGTATCAGTTAACCCCAAAGACCTAGAGTTAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCCAGGGAAATTGTGGATAATGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTTATACTATCTAAAGGCATTGATGGGGATCTTGCAATGAAGGGAAAGGAGAAGCTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCTCTCAAGCCTCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCGTAGCTCCTCGTTTAGATATTGATCAACTGTCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................ATGCTGAGAAGGAAATAGAAAGACAGAAAGGTAGCAGTATCCATGATCCAGATGTGAATAATCCACCCGCCAATGCACGGCGTCGTCGACCAGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475048" ref_strand="+" ref_description="SGN-E475048 [cSTB-39-G13]">
      <seq>ctgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctctccatagccttgccggactttctctactcccaacaacagttagggtttccaccgacgcctctgtatcagttaaccccaaagacctagagttaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggccagggaaattgtggataatggtgcggagcttttgaataccaagtttacaagttttatactatctaaaggcattgatggggatcttgcaatgaagggaaaggagaagctccaggagagaagaccaggacttgggcgtaaaagggctcgattttctctcaagcctcctagtacaagtcaacctactgtcagcgtagctcctcgtttagatattgatcaactgtcagatccagtggaatttttctcagttgctgaaaagctagaagatgctgagaaggaaatagaaagacagaaaggtagcagtatccatgatccagatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20292" stop="18688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19992" g_stop="19810" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="389" r_length="206" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.782" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="18988" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="536" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E475048" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19992" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="18988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAG---CCTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAA</genome_strand>
        <mrna_strand>CTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCATAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGACGCCTCTGTATCAGTTAACCCCAAAGACCTAGAGTTAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCCAGGGAAATTGTGGATAATGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTTATACTATCTAAAGGCATTGATGGGGATCTTGCAATGAAGGGAAAGGAGAAGCTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCTCTCAAGCCTCCTAGTACAAG..............................................................................TCAACCTACTGTCAGCGTAGCTCCTCGTTTAGATATTGATCAACTGTCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG................................................................................................................................ATGCTGAGAAGGAAATAGAAAGACAGAAAGGTAGCAGTATCCATGATCCAGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415049" ref_strand="+" ref_description="SGN-E415049 [STM-20-L17]">
      <seq>gagggtgaaacttccaaccccttattggaagatggtgaacgaagctcttatctccgatccggtggatcctcagcatagccttgccggactttctctactcccaacaacagttagggtttccaccgacgcctctgtatcagataaccccaaagacctagagttaattcacaatttcatgaagtccatggaaaccaagggtcctgggctcttggaggaggccagggaaattgtggataatggtgcggagcttttgaataccaagtttacaagttgtatactatctaaaggcattgatggggatcttgcaatgaagggaaaggagaagctccacgagagaagaccaggacttgggcgtaaaagggctcgattttctctcaagcctgctagtacaagtcgacctactgtcagcgtagctcctcgtttagatattgatcaactgtcagatccagtggaatgtttctccagtgctgaaaagctacaagatgctgagaaggaaatagaaagacagaaaggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20291" stop="18714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19996" g_stop="19810" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19543" g_stop="19341" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="393" r_length="206" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.782" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19262" g_stop="19174" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="482" r_length="89" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128">
            <donor d_prob="0.978" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19045" g_stop="19012" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="516" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E415049" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19996" e_stop="19810"/>
          <exon e_start="19543" e_stop="19341"/>
          <exon e_start="19262" e_stop="19174"/>
          <exon e_start="19045" e_stop="19012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATGGTAATTTTCCGTTTGTTTTTCTTCACTTCTTTAGATTTCTAGCTCTTTTATAGATCTTACATGTTAATTTAGAGGAGAAGTAGTGTTAATGTCGTTACTATGGAGTTTTCGCTGTTCTTCGGTTCGTTCCTGCACTGAACTCCAACTTACAATTAGTACAATTAAAATGGAGTCTAACTTACATAATTGTTGTAGTTTGTCCGTTTACAATTGGCTAGTTATATGATTTTGGATGATGTTGTTCTCCTTCTTTATGATAATAAAAGGAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAG-C--CTAGTACAAGGTAAATTATAGACAGTTTTTCTTTATTCTCTAATTAGATCCTATTGAAACCATGGTGTTAGCTTACCTTGCTATGCAGTCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAGGTGATTTTGTTTCTTTTGTTATCTCTTAACTATCTGCTTGCAAATTTGATCCGTCGGCAACTAAAAACAGTATATATTATACTTAGAAAAATAACAGTTTTAGTGTTTTACATATGGTGAACTTACAGTTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGG</genome_strand>
        <mrna_strand>GAGGGTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCAGCATAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGACGCCTCTGTATCAGATAACCCCAAAGACCTAGAGTTAATTCACAATTTCATGAAGTCCATG..........................................................................................................................................................................................................................................................................GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCCAGGGAAATTGTGGATAATGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTGTATACTATCTAAAGGCATTGATGGGGATCTTGCAATGAAGGGAAAGGAGAAGCTCCACGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCTCTCAAGCCTGCTAGTACAAG..............................................................................TCGACCTACTGTCAGCGTAGCTCCTCGTTTAGATATTGATCAACTGTCAGATCCAGTGGAATGTTTCTCCAGTGCTGAAAAGCTACAAG................................................................................................................................ATGCTGAGAAGGAAATAGAAAGACAGAAAGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439400" ref_strand="+" ref_description="SGN-E439400 [cSTA-12-A19]">
      <seq>agataaaagccaccattcctatggtatttcttctctatcgcagcccttaaatacaaagccctcactttttcacttccaatctatcgatctttcactcgattcgctctatatctcaacaatctccgctctgcaaccaatgggggccttcacttcctccaaaagaggccaacctcttcaaactcatagttaaatcttaccgagactaagcagtataagaaaggactaaaagctgctgataccgattctcaagaagtttcctaatcatggagaaacattgtcaatgaaaggattaaccattgaattgtatggacccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtcccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24984" stop="28761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25273" g_stop="25464" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="269" r_length="81" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="354" r_length="85" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28461" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="487" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E439400" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25273" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAAAAGCCAGTAATCCTATGGTATACTATTTCTTCTGTATCGCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAA-CAATGGGGG-CTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTA-CGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATA-CAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAA-CATTGAATTGTATGGA-CCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAG</genome_strand>
        <mrna_strand>AGATAAAAGCCACCATTCCTATGG--TA-T-T-TCTTCTCTATCGCAGCCCTTAAATACAAAGCCCTC-ACTTTTTCACTTCCAATCTATCGATCTTTCACTCGATTCGCTCTATATCTCAACAATCTCCGCTCTGCAACCAATGGGGGCCTTCACTTCCTCCAAAAGAGGCCAACCTCTTCAAACTCATAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACCGAGACTAAGCAGTATAAGAAAGGACTAAAAGCTGCTGATACCGATTCTCAAGAAGTTTCCTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACCATTGAATTGTATGGACCCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTCCCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470492" ref_strand="+" ref_description="SGN-E470492 [cSTB-18-O2]">
      <seq>gaggatggtatctcttctctatcgcattccttaaatacaaagccctcactttttcactgccaatctatcgatctttcactcgatccgctctatatctcaacaatctccgctctgcaacaatgggggcttcactttctccaaaagaggccaacctcttcaaactcatagttaaatcttacgagactaagcagtataagaaaggactaaaagctgctgatacgattctcaagagggaaactaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgagacctatcccttctacaggcacaaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24995" stop="28779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25294" g_stop="25464" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="249" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="332" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="482" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E470492" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25294" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATACTATTTCTTCTGTATCGCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG</genome_strand>
        <mrna_strand>GAGGATGGTATCTCTTCTCTATCGCATTCCTTAAATACAAAGCCCTCACTTTT-TCACTGCCAATCTATCGATCTTTCACTCGATCCGCTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTTCTCCAAAAGAGGCCAACCTCTTCAAACTCATAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACGAGACTAAGCAGTATAAGAAAGGACTAAAAGCTGCTGATACGATTCTCAAGAGGGAAACTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739252" ref_strand="+" ref_description="SGN-E739252 [LC16CG06]">
      <seq>gcagcccttaaatagaaagccctcaattttttcacttccaatctatcaatatttcactcgattcactctatatctcaacaatctccgctctgcaacaatgggggcttcacttcctcctaaagaggccaacctcttcaaactcatcgttaaatcttacgagactaagcagtacaagaaaggactaaaagctgctgatacaattctcaagaaatttcctaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgagacctatcccttctacaggcacaaatgcgcgacttggaaggttttgttgaaacaagacagcaattgctcactctaaaaccaaatcatcgcatgaactggattggctttgcagttgctcatcatttaaactcaaatggatcaaaagctgttgatatccttgaggcatatgaagggactcttgatgacgattaccctccagagaatgaacgttgtgaacatggggagatgctcctgtacaagatctctttattagaggaatgtggatttcctgagagggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25017" stop="31415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25317" g_stop="25464" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="227" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="310" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="460" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28479" i_stop="29120" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29121" g_stop="29236" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="576" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29237" i_stop="30217" i_length="981">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30218" g_stop="30323" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="682" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30324" i_stop="31072" i_length="749">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31073" g_stop="31115" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="725" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E739252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25317" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28478"/>
          <exon e_start="29121" e_stop="29236"/>
          <exon e_start="30218" e_stop="30323"/>
          <exon e_start="31073" e_stop="31115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAGGTGGGGACTCTTCTGATCTTCTTTGTAACAAATATTTGATTTTTTGATCCTCTTTCTTTTTTTCCTGACCATTTGTGCACTTCAGCTAGTCTCCTCTTCTCCCTATTTGATGGTATTAGTTAGTAATTCAGGGCGGACTAGAAGTTAATCATATATAGTTATGATTTGCCTTTATTTTCGTTTGATACTTACATTCATTTTAAAGTGCCTTGTGAAAAAAATGTTTTTTGGAAGTGCAGACTTTTGTATTTTATTCCTTCTTTCATTAATGCAAGTGCTATTTTTGAAGTCTTATACAGTGTTGATTCCATGCCTTCTCTTGTCGATCCAAGTACAGTTTGACTTTTGACATGTACTTTATGCTCATATAGATTATGTCCATAGAATTTCAACAATTCATTGTGTGCTTTTGATGTGGCGTATCTATAGTCATCTTCTTCAGTTGTGTTCTTAAGATAGTGCTATTACATGGAGCTGCTGATTTCACAGAAACATGTAGATGTGCAAGTCTGGCCCATTCCAATTACATATTCTGTTTTGATATGTGCTTCAATGAATTGCTCTGACTACCTTTCACATTCATTATGAAGTTTATTTATCATGCTCCGTCCAATTTATGCATTGATTTGTGTTTTCTAACAGGCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAAGTATGCGTCGCTTCTAGTATGGTAGAGATATCTACTTTGTTTTGCTGACGTCTTTGAGGACTGCTGCATTATATGTTTTTCTGATGTTAAATATCTCTGTGGGGGAATAATATCAGCACCTAAATTCACCTGATTGAAATTTTACAGCTGACTTTCTCTACTAATCAGTATCAACTACCAAGCAGGTAGCAAAAGACTGTAAAAATGCAGACTTAAAATGCAGACTTGTCTCATCACACGTCGGAGTCCAAGTCCAATACTATCTCCATTTACATTTTCAATGCTTCTCCTACTCCAAATATAAAATTTGATAACATTTGACTTTACAAACTGACATTCCCTTTTCTTATCTTAAAAAAGGAAATTGGCAGTTGGTCGATTTTCTTGGTTCCTGTGCTCTTTTAATTTCATTTCTCTTGTTAGATTCCACCAATAACAACTCTTTTGAGTTTTATGTGTGGACAGGATTTTGGTTGCTTAAGTGGGTAAGTTGATATCAAGTCCTATTCAGTATTTAGCTAATTCGTTTCAGTAGAAAAAAGAAAATTACTCTTAGATAATTGAAGCGCGAAGGTGCCGGAGTTGTTTTATCGCTATGTTGTACTGTTCGAGTCTTTCTTGTCACTATTGACATGGATTTCTATGTTGTTGAGAAACAATAAGATTTATCAGAAGGGCCAAGAAATCAAAAGTCGGCATAACACTTGAAGTTTGATATAACTAGTGGCGTGAATGTGTTGCATCTTCAGAACTTATACTTTGTAGTGATAAGAGATAGTTCAGCATTTTCATTATTGTTACTTCAGTAGGTTTCCTTTGCCTGAAGTTTCTAAGTTGTTCAGGTATTATCATTCATGGGGTTAATGGGTACTCTTGTTGTTGCTGCTAAGTGCTATCACTGTTTATTTCAAAAATATTGTGCTGTTCAGTTCTATTATCTAATCCGTGGATGTTGAGGTAGTTCCCTTTGTTGTTTGTTAGTGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAGGTAACAGTCACCGCTAGGAATTAGTTTTGTTTAAGATTTTATCTTTATTTGAGGGACTGTGTTTGGTAGCAGCCAAGACACTTGTGCAAATACCAATCTGCTTTAGCTTGGTACTGTTAATGTTTTGCACTTACAGGCTTGAAACTTCCCAAAGTTCACTTATTTGCATTTCCCTTTTTCAGAAATTATATTTAGTATGAGAGTGTTTTTCAAGCTGGAAAAGTATACATTGCAGTTGAAATTGTCATATAAAATAAAAGAGTATACATTGCAGTTGATTTAGCACCATATTCAGAAAGTTGTCTATCAGTGAAGTGTAGTCCATAGTTGGACACGCAAAAAGTGACTGGTCCTATCTGTTGTAGTGTTTCTGATCAATACTGTCCGAGACAACCTGAAGTTGCTGCTTAGAATAGCTACATCATTGTGTTATAGTCATGCCTAATACTTAAGTTGCTTTATATCTGCATAGGAAATTTAGGATGCTCATGAGTTATCCGAAGACATTTTGCCTCTGTAGTCACTGGTCATCCTTAGCCAACAATTTAACGTAGATCAAGTTTCTTTTTTTTTTTTTGGGGGGGGGGGGTTCTTGTACTAACTTGGTGGTGTTTCTTTTGATGAAATTTTCCATTTGATGGTATTCACTTGGCATTGTTGATTGTGGAGATTTTAGATATGAATTGCCTCTTTAGGATGCTGCTGCTTAATTCTGCAACTTCGGTGTCATGTGCTTTTGACTATTTCAGATCTCTTTATTAGAGGAATGTGGATTTCCTGAGAGGGCTCTTG</genome_strand>
        <mrna_strand>GCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTTATTAGAGGAATGTGGATTTCCTGAGAGGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281288" ref_strand="-" ref_description="SGN-E281288 [cLEL-1-M10](-)">
      <seq>gcacgagaaatagaaagccctcaattttttcacttccaatctatcaatatttcactcgattcactctatatctcaacaccctccgctctgcaacaatgggggcttcacttcctcctaaagaggccaacctcttcaaactcatcgttaaatcttacgagactaagcagtacaagaaaggactaaaagctgctgatacaattctcaagaaatttcctaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25026" stop="28761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25317" g_stop="25464" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="225" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="308" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28461" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="441" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E281288" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25317" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAG</genome_strand>
        <mrna_strand>GCA--CGAGAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACACCCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409470" ref_strand="+" ref_description="SGN-E409470 [PPI-14-M7]">
      <seq>acaaagccctcacttttttcacttccaatctatcgatctttcactcgattcgctctatatctcaacaatctccgctctgcaacaatgggggcttcacttcctccaaaagaggccaacctcttcaaactcatagttaaattttacgagactaagcagtataagaaaggactaaaagctgctgatacgattctcaagaaatttcctaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgacctaaagagtcatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggaatgatcctgaccatattgagatattacgagaactatcccttctacagggaccaatgcgcgaattggaaagggtttgtgaaacnagaacagcattgctcactctaaacccaatcatcgtatgaactggattggctttgccgttgctcatcatttaaactcaaatggatcaaaagctgttgatatccttgaggcatatgaagggactcttgatgatgattaccctccagagaatgaacgttgtgaacatggggagatgctcctgtacagatctctttattagaggaatgtggatttcctgagagggctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25030" stop="31416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25330" g_stop="25464" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="297" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="447" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28479" i_stop="29120" i_length="642">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29121" g_stop="29236" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="562" r_length="115" r_score="0.871"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29237" i_stop="30217" i_length="981">
            <donor d_prob="0.622" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30218" g_stop="30323" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="667" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30324" i_stop="31072" i_length="749">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31073" g_stop="31116" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="711" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E409470" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25330" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28478"/>
          <exon e_start="29121" e_stop="29236"/>
          <exon e_start="30218" e_stop="30323"/>
          <exon e_start="31073" e_stop="31116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAGGTGGGGACTCTTCTGATCTTCTTTGTAACAAATATTTGATTTTTTGATCCTCTTTCTTTTTTTCCTGACCATTTGTGCACTTCAGCTAGTCTCCTCTTCTCCCTATTTGATGGTATTAGTTAGTAATTCAGGGCGGACTAGAAGTTAATCATATATAGTTATGATTTGCCTTTATTTTCGTTTGATACTTACATTCATTTTAAAGTGCCTTGTGAAAAAAATGTTTTTTGGAAGTGCAGACTTTTGTATTTTATTCCTTCTTTCATTAATGCAAGTGCTATTTTTGAAGTCTTATACAGTGTTGATTCCATGCCTTCTCTTGTCGATCCAAGTACAGTTTGACTTTTGACATGTACTTTATGCTCATATAGATTATGTCCATAGAATTTCAACAATTCATTGTGTGCTTTTGATGTGGCGTATCTATAGTCATCTTCTTCAGTTGTGTTCTTAAGATAGTGCTATTACATGGAGCTGCTGATTTCACAGAAACATGTAGATGTGCAAGTCTGGCCCATTCCAATTACATATTCTGTTTTGATATGTGCTTCAATGAATTGCTCTGACTACCTTTCACATTCATTATGAAGTTTATTTATCATGCTCCGTCCAATTTATGCATTGATTTGTGTTTTCTAACAGGCACAAATGCGCGACTTGG-AAGGTTTTGTTGAAACAAG-ACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAAGTATGCGTCGCTTCTAGTATGGTAGAGATATCTACTTTGTTTTGCTGACGTCTTTGAGGACTGCTGCATTATATGTTTTTCTGATGTTAAATATCTCTGTGGGGGAATAATATCAGCACCTAAATTCACCTGATTGAAATTTTACAGCTGACTTTCTCTACTAATCAGTATCAACTACCAAGCAGGTAGCAAAAGACTGTAAAAATGCAGACTTAAAATGCAGACTTGTCTCATCACACGTCGGAGTCCAAGTCCAATACTATCTCCATTTACATTTTCAATGCTTCTCCTACTCCAAATATAAAATTTGATAACATTTGACTTTACAAACTGACATTCCCTTTTCTTATCTTAAAAAAGGAAATTGGCAGTTGGTCGATTTTCTTGGTTCCTGTGCTCTTTTAATTTCATTTCTCTTGTTAGATTCCACCAATAACAACTCTTTTGAGTTTTATGTGTGGACAGGATTTTGGTTGCTTAAGTGGGTAAGTTGATATCAAGTCCTATTCAGTATTTAGCTAATTCGTTTCAGTAGAAAAAAGAAAATTACTCTTAGATAATTGAAGCGCGAAGGTGCCGGAGTTGTTTTATCGCTATGTTGTACTGTTCGAGTCTTTCTTGTCACTATTGACATGGATTTCTATGTTGTTGAGAAACAATAAGATTTATCAGAAGGGCCAAGAAATCAAAAGTCGGCATAACACTTGAAGTTTGATATAACTAGTGGCGTGAATGTGTTGCATCTTCAGAACTTATACTTTGTAGTGATAAGAGATAGTTCAGCATTTTCATTATTGTTACTTCAGTAGGTTTCCTTTGCCTGAAGTTTCTAAGTTGTTCAGGTATTATCATTCATGGGGTTAATGGGTACTCTTGTTGTTGCTGCTAAGTGCTATCACTGTTTATTTCAAAAATATTGTGCTGTTCAGTTCTATTATCTAATCCGTGGATGTTGAGGTAGTTCCCTTTGTTGTTTGTTAGTGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAGGTAACAGTCACCGCTAGGAATTAGTTTTGTTTAAGATTTTATCTTTATTTGAGGGACTGTGTTTGGTAGCAGCCAAGACACTTGTGCAAATACCAATCTGCTTTAGCTTGGTACTGTTAATGTTTTGCACTTACAGGCTTGAAACTTCCCAAAGTTCACTTATTTGCATTTCCCTTTTTCAGAAATTATATTTAGTATGAGAGTGTTTTTCAAGCTGGAAAAGTATACATTGCAGTTGAAATTGTCATATAAAATAAAAGAGTATACATTGCAGTTGATTTAGCACCATATTCAGAAAGTTGTCTATCAGTGAAGTGTAGTCCATAGTTGGACACGCAAAAAGTGACTGGTCCTATCTGTTGTAGTGTTTCTGATCAATACTGTCCGAGACAACCTGAAGTTGCTGCTTAGAATAGCTACATCATTGTGTTATAGTCATGCCTAATACTTAAGTTGCTTTATATCTGCATAGGAAATTTAGGATGCTCATGAGTTATCCGAAGACATTTTGCCTCTGTAGTCACTGGTCATCCTTAGCCAACAATTTAACGTAGATCAAGTTTCTTTTTTTTTTTTTGGGGGGGGGGGGTTCTTGTACTAACTTGGTGGTGTTTCTTTTGATGAAATTTTCCATTTGATGGTATTCACTTGGCATTGTTGATTGTGGAGATTTTAGATATGAATTGCCTCTTTAGGATGCTGCTGCTTAATTCTGCAACTTCGGTGTCATGTGCTTTTGACTATTTCAGATCTCTTTATTAGAGGAATGTGGATTTCCTGAGAGGGCTCTTGA</genome_strand>
        <mrna_strand>ACAAAGCCCTCACTTTTTTCACTTCCAATCTATCGATCTTTCACTCGATTCGCTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCAAAAGAGGCCAACCTCTTCAAACTCATAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTACGAGACTAAGCAGTATAAGAAAGGACTAAAAGCTGCTGATACGATTCTCAAGAAATTTCCTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTAAAGAGTCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGAATGATCCTGACCATATTGAGATATTACGAGAACTATCCCTTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCAATGCGCGAATTGGAAAGGGTTTG-TGAAACNAGAACAGC-ATTGCTCACTCT-AAACCCAATCATCGTATGAACTGGATTGGCTTTGCCGTTGCTCATCATTTAAACTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGATGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTAC-AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTTATTAGAGGAATGTGGATTTCCTGAGAGGGCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327393" ref_strand="+" ref_description="SGN-E327393 [cTOC-19-O19]">
      <seq>agaaagccctcaattttttcacttccaatctatcaatatttcactcgattcactctatatctcaacaatctccgctctgcaacaatgggggcttcacttcctcctaaagaggccaacctcttcaaactcatcgttaaatcttacgagactaagcagtacaagaaaggactaaaagctgctgatacaattctcaagaaatttcctaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgagacctatcccttctacaggcacaaatgcgcgacttggaaggttttgttgaaacaagacagcaattgctcactctaaaaccaaatcatcgcatgaactggattggctttgcagttgctcatcatttaaactcaaatggatcaaaagctgttgatatccttgaggcatatgaagggactcttgatgacgattaccctccagagaatgaaacgtgtgaacatggggagatgctcctgtacaagatctctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25030" stop="30625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25330" g_stop="25464" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="297" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="447" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28479" i_stop="29120" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29121" g_stop="29236" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="563" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29237" i_stop="30217" i_length="981">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30218" g_stop="30323" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="669" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E327393" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25330" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28478"/>
          <exon e_start="29121" e_stop="29236"/>
          <exon e_start="30218" e_stop="30323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAGGTGGGGACTCTTCTGATCTTCTTTGTAACAAATATTTGATTTTTTGATCCTCTTTCTTTTTTTCCTGACCATTTGTGCACTTCAGCTAGTCTCCTCTTCTCCCTATTTGATGGTATTAGTTAGTAATTCAGGGCGGACTAGAAGTTAATCATATATAGTTATGATTTGCCTTTATTTTCGTTTGATACTTACATTCATTTTAAAGTGCCTTGTGAAAAAAATGTTTTTTGGAAGTGCAGACTTTTGTATTTTATTCCTTCTTTCATTAATGCAAGTGCTATTTTTGAAGTCTTATACAGTGTTGATTCCATGCCTTCTCTTGTCGATCCAAGTACAGTTTGACTTTTGACATGTACTTTATGCTCATATAGATTATGTCCATAGAATTTCAACAATTCATTGTGTGCTTTTGATGTGGCGTATCTATAGTCATCTTCTTCAGTTGTGTTCTTAAGATAGTGCTATTACATGGAGCTGCTGATTTCACAGAAACATGTAGATGTGCAAGTCTGGCCCATTCCAATTACATATTCTGTTTTGATATGTGCTTCAATGAATTGCTCTGACTACCTTTCACATTCATTATGAAGTTTATTTATCATGCTCCGTCCAATTTATGCATTGATTTGTGTTTTCTAACAGGCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAAGTATGCGTCGCTTCTAGTATGGTAGAGATATCTACTTTGTTTTGCTGACGTCTTTGAGGACTGCTGCATTATATGTTTTTCTGATGTTAAATATCTCTGTGGGGGAATAATATCAGCACCTAAATTCACCTGATTGAAATTTTACAGCTGACTTTCTCTACTAATCAGTATCAACTACCAAGCAGGTAGCAAAAGACTGTAAAAATGCAGACTTAAAATGCAGACTTGTCTCATCACACGTCGGAGTCCAAGTCCAATACTATCTCCATTTACATTTTCAATGCTTCTCCTACTCCAAATATAAAATTTGATAACATTTGACTTTACAAACTGACATTCCCTTTTCTTATCTTAAAAAAGGAAATTGGCAGTTGGTCGATTTTCTTGGTTCCTGTGCTCTTTTAATTTCATTTCTCTTGTTAGATTCCACCAATAACAACTCTTTTGAGTTTTATGTGTGGACAGGATTTTGGTTGCTTAAGTGGGTAAGTTGATATCAAGTCCTATTCAGTATTTAGCTAATTCGTTTCAGTAGAAAAAAGAAAATTACTCTTAGATAATTGAAGCGCGAAGGTGCCGGAGTTGTTTTATCGCTATGTTGTACTGTTCGAGTCTTTCTTGTCACTATTGACATGGATTTCTATGTTGTTGAGAAACAATAAGATTTATCAGAAGGGCCAAGAAATCAAAAGTCGGCATAACACTTGAAGTTTGATATAACTAGTGGCGTGAATGTGTTGCATCTTCAGAACTTATACTTTGTAGTGATAAGAGATAGTTCAGCATTTTCATTATTGTTACTTCAGTAGGTTTCCTTTGCCTGAAGTTTCTAAGTTGTTCAGGTATTATCATTCATGGGGTTAATGGGTACTCTTGTTGTTGCTGCTAAGTGCTATCACTGTTTATTTCAAAAATATTGTGCTGTTCAGTTCTATTATCTAATCCGTGGATGTTGAGGTAGTTCCCTTTGTTGTTTGTTAGTGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAG</genome_strand>
        <mrna_strand>AGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAAACGTGTGAACATGGGGAGATGCTCCTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359060" ref_strand="+" ref_description="SGN-E359060 [cLHT-11-B19]">
      <seq>ttcacttcctcctaaagaggccaacctcttcaaactcatcgttaaatcttacgagactaagcagtacaagaaaggactaaaagctgctgatacgattctcaagaaatttccaaatcatggagaaacattgtcaatgaaaggattaacattgaattgtatggaccggaagtcagaagcatatgaacttgtccggcttggattgaagaatgaccttaagagccatgtttgttggcatgtttatggtctcctataccggtctgatagagagtaccgagaagcaattaaatgctatcgaaatgccctcaggattgatcctgacaatattgagatattacgagacctatcccttctacaggcacaaatgcgcgacttggaaggttttgttgaaacaagacagcaattgctcactctaaaaccaaatcatcgtatgaactggattggctttgcagttgctcatcatttaaactcaaatggatcaaaagctgttgatatccttgaggcatatgaagggactcttgatgacgattaccctccagagaatgaacgttgtgaacatggggagatgctcctgtacaagatctctttattagaggaatatggatttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="25122" stop="31403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25422" g_stop="25464" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26362" g_stop="26440" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="122" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="205" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28329" g_stop="28478" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="355" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28479" i_stop="29120" i_length="642">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29121" g_stop="29236" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="471" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29237" i_stop="30217" i_length="981">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30218" g_stop="30323" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="577" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30324" i_stop="31072" i_length="749">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31073" g_stop="31103" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="608" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E359060" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25422" e_stop="25464"/>
          <exon e_start="26362" e_stop="26440"/>
          <exon e_start="28097" e_stop="28179"/>
          <exon e_start="28329" e_stop="28478"/>
          <exon e_start="29121" e_stop="29236"/>
          <exon e_start="30218" e_stop="30323"/>
          <exon e_start="31073" e_stop="31103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTTGTAAGTCTTCAGTTCTATTTCCTATCTTCTACTTCAATCGATGAATTGTTTTCACTTGAATTTTATTGTTCGCATCTAATTTCTCTCTTTTCGTTTATGTTAATTTTAACCCTAGGATTCATGACTATTACATTCACTGAATTGGATGTCTGATTTGAATGTTACTGTAATCCTTACTTAGCTTTGCGAATTTGAACTAAAGATTGTGACTTTTTCAAGATCCTGTGGCGATGGGGACATAATTTATATGTTCAGTCAAGATACTTGTTTGGATGGAACATCATACGTGTGTATTACATTATTCATGTCAAGTGTCTGTATTTAATGAGTGGCCGACTGAATAATGTTATTATCATCAAGAAGTGTCATTTATTTACACAAGCGTCAGTCTTTTTTATTACTTTTGAGTTAATTGAATAGCATTCCCTTTCTGGATCTTCGTTAAGGAATACCCTTTTTCCTATCTGACCATGTGAAGTGGAGAAGGTCATGATTACTGGCTTGCAGTAACACTTCTGCAGAATTTTGTTTTGAATGCTTTTATTTAATATCATTTGTGGCAATCGAGAATTGTTCCCTTCAGTCTTCAATTTAGCATCCTGAATCATTCAAGTAATGGTTGTGAAGTGGCAGGAGTCGCTTAGCATGTAGGTCATGGGGCCAGTATATCTTACTTTTTTTTAGTAGGATTGACATATTTTTATCTGACTTGTATCGACATTGTTAGATGACTGCATAAGACAATTAAGTTTAATTTTATTTGCTAGTGTATGTCCTCATTCTGAGTATCCATGACTTGATATGAAGATATGTCTGACTTTATCTCTAATTCATTTCTGGCATTGTAAGTTGTTGAAGACATGGTTAATTTAATACCCTATTCATCAATTCCTGCAGAAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAGGTAAGTCTAATTTTATTGCAGCATATCCAAAATGGAATTTAAAAGTAAATCATTGGTTCCTTTTGACTGTACCACTAGACAGGACATCAGTTTGTTCATTTTAAAATGCTTTGGTACATTTATATGCATGAATAACTCTATAGCCATTTCTACCATGTTAGATTCAAATAGTCAACTAGCTTCACTCATTCAAGCATCTAACTTATTCTGTCAGTGGTATATGCCAGAAGGCAGTTGGACATACGTTTCCATCCGAGCAACAAGCTTTTTGCTACCAAAGTTAACTGGAGGCATATTTATAGTCACTGCTGTGTACTCTCCTTTCTGTTGCTCCCAATATTACGAGGGATGGAGAAACAAACACATGCACCAAATATTAATGTGTTTCTAGACCTTGTCTGGTTTTATTCAGTAGCAGTGATCGATCAAGTTGTCCTTCGGGGACATCCAATAAAAAAGCACTGGAGATGCTGAAACTAACTGCAATGTTTTCACTGTGCTCCTGCTTACGACTTAAATAAGTCTGAGCATGTCTAAGTTAAAATAGTATCCATGAATACAAGGGCAGAGCTATCTTGGAGAAAGGGGGTTCAATTCACTAAAATTATGAAAAAATTATTTTTGGGGTTATATAATATAAGCTGCTTCGACATAAGGAAATTCCAGTAGAAGTGGTAAGGGAGGTAAGAATTTCTCACATGTTCAAATTCCTCAACACAATGATCACCACTGCCCCTGTTATTGGAGCTGCCTTCGACAAGTGCACCACCAATACCGCCTGCGACGATGTTGACTATCTTGGCATGTGGCTGTTGTCTGTGGATCAACATCGAACTCGTGGGCTTCACCTTTTGACTAAGTTGGGTGAGCCTTTAGATTTGATACCAGATTGGTGGCAACCATTATCAGGAGCAATGGAACTGGAATTTTCGGCACTGAAACACCTCACTGTACCCTTGATCCTAATTCCATGTTCACTCTCCAATGCCATTGTTGTCTCCTTTAGAACCTAAAGACCATGTCAAAACCATAATTTATTTTTCCTCTCCTGATATTAACTGATTTTGTCACATTTGAGACACACTTGAGAGCTGAATCTCAGGGTAGGACTAGGGAAGGGTTTCCCCTAACTTAGGCCGTGCTTCAGTGATATTAACTGATTTTGTTTCATTTGAGACACACTTGAGAGCTAAATCTCAGTGTAGGACTAGGGAAGGTGCTTCCCTAACTTAGGCCGTGCTTCAGTATAGGAAAGGTATTAAGGTATGTCCCCGTTGAAATACGTCGTATCTTTAATAGAGCAATACTAAAAAAATAAATACATGGAAAAAAGATATGTTAATTGTTAAGGAAAATCAGTATGTATGAAGTTGTTTTTTTAATTGCATTTACATATATTTTCCTACTTTTGCTTCATTGCATTTTTTAGAACTAAAGCCCACATGTAAATCGCCCATTGCTGTCGAAAGTCCCGATAGACACATGAGCATTTTTTCACGGTTTTCGCCTTGATAACATTGACATTATCATCAACGTGGCTTTTGAGATGCAGTAACTGATGCACGGGCTATCAATAAGATACCCACATTCTTTGTTAATTGCCATTTTTTTCTGCGGATGCTGATGCTATTGTTTACTTCATGTTGTGGTTACCAGAAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAGGTGTAGTTTTCCTCTCTTTTTTTTTTCCTTTCATTTTTGGAATTAAAAGCTCATAGTGCTTTAGATTGGATTCCCTTATTTTGATAAGGGCTTTAGGTTGGATTCTTATTCGTGATGTATTGGAATTAATTATCTTCCTCTCTTTGCAGAATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAGGTGGGGACTCTTCTGATCTTCTTTGTAACAAATATTTGATTTTTTGATCCTCTTTCTTTTTTTCCTGACCATTTGTGCACTTCAGCTAGTCTCCTCTTCTCCCTATTTGATGGTATTAGTTAGTAATTCAGGGCGGACTAGAAGTTAATCATATATAGTTATGATTTGCCTTTATTTTCGTTTGATACTTACATTCATTTTAAAGTGCCTTGTGAAAAAAATGTTTTTTGGAAGTGCAGACTTTTGTATTTTATTCCTTCTTTCATTAATGCAAGTGCTATTTTTGAAGTCTTATACAGTGTTGATTCCATGCCTTCTCTTGTCGATCCAAGTACAGTTTGACTTTTGACATGTACTTTATGCTCATATAGATTATGTCCATAGAATTTCAACAATTCATTGTGTGCTTTTGATGTGGCGTATCTATAGTCATCTTCTTCAGTTGTGTTCTTAAGATAGTGCTATTACATGGAGCTGCTGATTTCACAGAAACATGTAGATGTGCAAGTCTGGCCCATTCCAATTACATATTCTGTTTTGATATGTGCTTCAATGAATTGCTCTGACTACCTTTCACATTCATTATGAAGTTTATTTATCATGCTCCGTCCAATTTATGCATTGATTTGTGTTTTCTAACAGGCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAAGTATGCGTCGCTTCTAGTATGGTAGAGATATCTACTTTGTTTTGCTGACGTCTTTGAGGACTGCTGCATTATATGTTTTTCTGATGTTAAATATCTCTGTGGGGGAATAATATCAGCACCTAAATTCACCTGATTGAAATTTTACAGCTGACTTTCTCTACTAATCAGTATCAACTACCAAGCAGGTAGCAAAAGACTGTAAAAATGCAGACTTAAAATGCAGACTTGTCTCATCACACGTCGGAGTCCAAGTCCAATACTATCTCCATTTACATTTTCAATGCTTCTCCTACTCCAAATATAAAATTTGATAACATTTGACTTTACAAACTGACATTCCCTTTTCTTATCTTAAAAAAGGAAATTGGCAGTTGGTCGATTTTCTTGGTTCCTGTGCTCTTTTAATTTCATTTCTCTTGTTAGATTCCACCAATAACAACTCTTTTGAGTTTTATGTGTGGACAGGATTTTGGTTGCTTAAGTGGGTAAGTTGATATCAAGTCCTATTCAGTATTTAGCTAATTCGTTTCAGTAGAAAAAAGAAAATTACTCTTAGATAATTGAAGCGCGAAGGTGCCGGAGTTGTTTTATCGCTATGTTGTACTGTTCGAGTCTTTCTTGTCACTATTGACATGGATTTCTATGTTGTTGAGAAACAATAAGATTTATCAGAAGGGCCAAGAAATCAAAAGTCGGCATAACACTTGAAGTTTGATATAACTAGTGGCGTGAATGTGTTGCATCTTCAGAACTTATACTTTGTAGTGATAAGAGATAGTTCAGCATTTTCATTATTGTTACTTCAGTAGGTTTCCTTTGCCTGAAGTTTCTAAGTTGTTCAGGTATTATCATTCATGGGGTTAATGGGTACTCTTGTTGTTGCTGCTAAGTGCTATCACTGTTTATTTCAAAAATATTGTGCTGTTCAGTTCTATTATCTAATCCGTGGATGTTGAGGTAGTTCCCTTTGTTGTTTGTTAGTGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAGGTAACAGTCACCGCTAGGAATTAGTTTTGTTTAAGATTTTATCTTTATTTGAGGGACTGTGTTTGGTAGCAGCCAAGACACTTGTGCAAATACCAATCTGCTTTAGCTTGGTACTGTTAATGTTTTGCACTTACAGGCTTGAAACTTCCCAAAGTTCACTTATTTGCATTTCCCTTTTTCAGAAATTATATTTAGTATGAGAGTGTTTTTCAAGCTGGAAAAGTATACATTGCAGTTGAAATTGTCATATAAAATAAAAGAGTATACATTGCAGTTGATTTAGCACCATATTCAGAAAGTTGTCTATCAGTGAAGTGTAGTCCATAGTTGGACACGCAAAAAGTGACTGGTCCTATCTGTTGTAGTGTTTCTGATCAATACTGTCCGAGACAACCTGAAGTTGCTGCTTAGAATAGCTACATCATTGTGTTATAGTCATGCCTAATACTTAAGTTGCTTTATATCTGCATAGGAAATTTAGGATGCTCATGAGTTATCCGAAGACATTTTGCCTCTGTAGTCACTGGTCATCCTTAGCCAACAATTTAACGTAGATCAAGTTTCTTTTTTTTTTTTTGGGGGGGGGGGGTTCTTGTACTAACTTGGTGGTGTTTCTTTTGATGAAATTTTCCATTTGATGGTATTCACTTGGCATTGTTGATTGTGGAGATTTTAGATATGAATTGCCTCTTTAGGATGCTGCTGCTTAATTCTGCAACTTCGGTGTCATGTGCTTTTGACTATTTCAGATCTCTTTATTAGAGGAATGTGGATTTCCTG</genome_strand>
        <mrna_strand>TTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACGATTCTCAAGAAATTTCCAAATCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG.....................................................................................................................................................AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGTATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTTATTAGAGGAATATGGATTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446441" ref_strand="+" ref_description="SGN-E446441 [cSTA-21-M2]">
      <seq>agatactatgatggtttacaaagatgtttgggattgtattctgaaaaggggcaatataccgctgatgaaattgatagactagaaaatttgtacagagtacttgcccatcagtatagtagatcatctgctgtaaagagaattccacttgattttctccaagatgacaagtttcgagaagctgcagataattatattcgacctcttctgacaaaaggggttccttctttgttttctgatctttatccgctgtatgatcatcctggcaaggctgatattctaggggaatttgttttgaagcttgaacaatcacttaagagtactggtggataccctgggagagtggagaaggaacccccttcaacacttatgtggactttattttatttggctcagcactatgatagacgtgaacagtatgacattgctcttactaaaattgacgaggcaattgagcacactccaactgtaatagatttatactctgtcaagagccgcatactaaagcatgctggtgacttggcagcagctgctgcacttgctgatgaagctaggtgtatggatcttgcagatcgatatgttaatagcgaatgtgttaagcgcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32254" stop="38480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32554" g_stop="32688" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32689" i_stop="34636" i_length="1948">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34637" g_stop="34714" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="213" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34715" i_stop="34792" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34793" g_stop="34846" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="267" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34847" i_stop="34954" i_length="108">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34955" g_stop="35025" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="338" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35026" i_stop="35943" i_length="918">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35944" g_stop="35998" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="393" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35999" i_stop="36083" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36084" g_stop="36179" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="489" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36180" i_stop="38064" i_length="1885">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38065" g_stop="38180" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="605" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E446441" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32554" e_stop="32688"/>
          <exon e_start="34637" e_stop="34714"/>
          <exon e_start="34793" e_stop="34846"/>
          <exon e_start="34955" e_stop="35025"/>
          <exon e_start="35944" e_stop="35998"/>
          <exon e_start="36084" e_stop="36179"/>
          <exon e_start="38065" e_stop="38180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTATGATGGTTTACAAAGATGTTTGGGATTGTATTCTGAAAAGGGGCAATATACCGCTGATGAAATTGATAGACTAGAAAATTTGTACAGAGTACTTGCCCATCAGTATAGTAGATCATCTGCTGTAAAGGTAATTGACTTTATTCTTTCTCAAAAAAATGTTCTCCCATTGCTGGCTTGTACTAGCCTCTATGTCACGTTTTTCTTTGTTTTCTCAACATGGTCGAGAAAACAAAGAGAAACGTGCTAAGCATTATACATTTAATGTTAACCTGCAACGTTCTGTTGATATTCTAATGTTGCAACAATAGGCTTAGCATTTTGTTGTATGTCCTAGACATCACGTTTTTATGAATAGTATAGATTATATCACACACAATCGAAGAACTTAAGACAAGGGGGCATTCTTGGTGAAGAATTTCCAACTTGGTCTTTTTTGGAGATTTTAGTTTTACTTCTGTTACATGGCTCCTCACTTTCAAATGTTATATTCCTTGAAGTCGGGGTGCTTTATATATTTTAAAAAAGAAAAAGACCTAAAGCTTGTGTTCTATCTCTACATTTAACCATGGAAATGGAGGACTCCAGTTCTCTTGTACGGTATGAAGACCACGGAAGGTGCTTTAGTTTCGTGACAATAGCTGCCAACCTCTTCTATGGTGATTCTTCCTCGTCTCGTGTTCGAGTACCCCTGCTACAAAGTCGCTGTTGTTAGTGAGCTCTTTACCCCCCAATGTGGGACTTCCGAGGGCAAATTTGGATTTAGTCGGGTTCTTATGTGGGTACTGGACACCGGTTAGGAAACCAAAAAAAAATTTTACTTTCTCATCTGTATTTGTTCATTTATATTCAGGAAGTTGTGACTTAAGCATCTACTTTGAAGAAACTGCTGTGTATATTTAGTTATGTCAGGTAATCAAAGATCATGTTCTTCCCCTTCAAATTCTCTGTTTTCCTTTATTCCCAGAGCACCCAAATAAGTGCTAGTGGTATGGATCATTCCCCCGATTGTCTTAGGTATTGCCCATTGTTCTCCAACCAAATTCAGAACTTCCACATTAACTGACTGGCCATCTTGTAGTGAACTAGTAAAATGGTTGAGGTCTTTACTGGAACAATGGCACAGCTAATAAATTTTCCTTTCCTCAAATTCTCAGCCATCAATGTTTCTTCCTAAGCTGCCAACCACGTAAAGAAGCAAACCTCTTCCTGTGTCCCTTTCGGCATCCACACTGATATGTATTGAAATCCAGAATCCTCCCTCTTCAATAGCCTGTTGTAGAAGGACGTGATTGAAGAAATCCAAAATCCAGGATCCTCCCTCTTCAATAGCCTGCTGTAGGAGGACATCTCTGAGAACAACCCGTGTCCCCTCTCTTCCACTTCCATAAATCCTGTTTCATTTAGGTGATGTTCTTTCTGTAAGTACCACCTCCATCAGTGTCTGTAGGTCCTTTACCTCCCCTCCTCCTGGTAAACTTCTCCTGAATTCAAGTCCCATACTTGTCCCTCCATCAGTCTTTGTTGCCCATAGAATGTATCAGACTGTTTTGTCTTGTAATTTTTATGACTTGCATGTGCACATTTGTTGTTATTCTACCCCTTTGTTTGATAAAAGTGACATTTTATTATCAATCTAGACCTTTCATAATCTTTGTGTGACTGAGAGCCATAAATGAAGTTGTTGTGTAGTAGCCCCGGGATTTGGTCAGTGCTGAGTAGTGGTAAGTACGCTGTAGGATCTGTGGGTAGGGGCACCTCACAGGTTCAAACCTTTCTGCAGACAAAAATGAGGTATTTAAGCGGAAAAGGGTGTAGTGGTCTCATTGTCTACTGAGTTCTGAATCGCGTGCCACTGGCCTCAGAGATCACTCAGATGTTCAAAGAAATGAAGTTCTTGTGGTTTTGTAGCCAAAAACATTCTTCTTTGTTTGATTATGGAGAAGTCTTTATCCCATTTTTTTGATCTAAGAAAGGGATGATCGTATTAAACATCATTTTTTTCAGTATGCATAATAGACTTCTTTGTTTGTTTCTGCGTCTTATTCTTCTGTTTCCTTTTCCATGTTCTTTTGCAGAGGATTCCACTTGATTTTCTCCAAGATGACAAGTTTCGAGAAGCTGCAGATAATTATATTCGACCTCTTCTGACAAAAGTATTTATTCTTGGCACTCCGTTAGGTTCCCTTGGTCTTAGAGCTGAGCTGATACTTTTTTTACTGATGCATATGTAGGGGGTTCCTTCTTTGTTTTCTGATCTTTATCCGTTATATGATCATCCTGGCAAGGTCAGTGCAGATGCTTCTTGATGTGCTTTGACTTACAGAGTAATGCATAATTATTGTAGCCTGTCTATATTTTTTGGATTGATTTCTGGTTCTCTTAATATCTTACAGGCTGATATTCTAGGGGAAATAGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAGGTATACATTCGCCTAATTTTTTGGTCTATGTTGCACTATGGCATGTTTCTTGATTCTAATGAAGGATTAACTAAATTGCTGTACTAACCTTATTTAACCACTTCTACCTGAACTGAGTTAATTTTTACTTGTTATTCTTGGTAATGTTTCATGTCAGTAAGAAGCTTGTCTAGTCTGTATGCTGACCATTTTGTACTATCTCATCCCTTCTGAACCACCTCGAGGGCTTGACAATTCAGTCTCTGATGAGTATCTTGAGTCAAGACTAGACCTGTTTTGAAGCAGTTCCTGGATAAGCAACTAACTTAGTGTTGTGCAAATAAGCAACTAACTAAGTGTTGTGCAAATTGGAAGGTAGTCCGGTGTTTCTGAAGAAATTTCTATCTATGAACCGAACAAAAAGATACTTAAATACAATTTTGAGATCACAGTGTTTCTTAATAATTTGCCAGTTTCTATTTCTTTTCTGGAAACTATTTTTTGAGAAGATTTCCAGAAACTATTTTAGCAGAACATATTTTCCTTTGCGTTGGTAACCTTTATATAAATGATGTTATATTGAGAGTGTGAAAGAGCAGACAAGATGTTAATAGTTAGTGACATATGTTCATGTGGTGTAGGGTTTCATTGTTTTTGAAAGATCACATGATATAGTCGTGCTTCTGGCTGCTATATCCATCGACCACTGTATAAAAAAACAGTGTAACCATCTAACTTGGAGTGATGGTGATTGACTTATGTCAAAGCCAAGAAATTCAATTAAACTAAGTAACCAACTCAATTGGGACAGAATTTGCCTTGGTTAATGCGTAAATGGACCATGTGCATGCCTATTGTAATACTTTATGGTCTTTTGTGTGATTTGCTATTTTTATGGGGTTATATACTTACAGATGTAACCTTATGCTTTAAGTGCAGAGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAGGTTTGCTCACTCGGCTCTGTTTAGTCAAACCTTTTCTGTGTTTACTTTTCACTCTCCAAATTGATGAAAGACTATGTTCCTGCAGCACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAGGTATATTGGCTTATTATCATTTTCTTTGGTCCCCTTTTGCATCCTTTTGACTTGAATGTTTAGTAAGAAGTTGCTTTTGGTCAAGATTCTGAAGTAAAATGTGCTCCAGTCTCTTTCCATTCTCTTACAATAGAATCAAGTGCCCCTTTTAATATCTTTTTTTTGAGAAGGATGCCCCTTTTAATTTTTCACCCAAGGGTGGGGCTTGCTGTCCTTTCCGGACCCCAGTCCCCCACCTGTTGGATTACACACTGGGAATGTTGTTGTTGTTGTTGCCTAAGCATCAATAGGCAGAGTTGCCCCCATAATTCTGCTGGTGGGTGATAGAATGTATCTGGTAGAATAGTTGAGGTGCGGACAAACTGTCTTGGACACAATTGTTATAAAAGAGAAGAAAAAATAATTTAAATAGGTGCTAATTGGGATTGATTCTTAGTAGTTATTAGTTACACTAGCATTACCAGTTCACCACCAGTGTCTGGTACGTCTCTTTTTTTTCTTTCCGTTAGAGATGTTATGTTAGTGCAAGTAAGTGGGTGAGATTTAGAAAACCTCTGTTTTAGAAGCACCTAAAGGCAAATTGTTTTCATACACAAATGGGTCATGAGTGAGTGGAATAGGAACAAATGATTTGTACAGTGACCTCAGCTACGTCTGGAATCGTGGTATAGTTGACTGATTGATATCTTGAAGATCAGTAACCCTTTATGCCCTATCCAGTATCATAAAACCTGTCACTAAATGTAGGAAAGCGGAAGGATCTTGAATAATAATATCCATTTCTTAATTCTTATATAGCTGATAGAGGCTAGAGCTTCAAATTGACTTCTGAGGAACTAATTTTGACCCTTAGGATGATTGCTGGATTTCTGAATTTCTGTTTATTTCTTGCTGTTTATGATGTTATATGCTTGAAGTTGGATCTGTGTGATGAAGGAGAAGTAAAATTTGTTATTTTTTTTCTTTACACCAAAAATTAAATATAGCTAAATACAATTGCTTTTGTCAAAGCTCTAGCGTTACTGTGAAATTAGGTCTTAGGCCTAACTCACCCCCCAAAAACTAGCTCAATGGGAGGAGGATTGCGCAACTTATAAGGAGTCCACTCATCTCATTAACCACCGATGTGGGGCTTTTGTCATTCTTTATCACCCCTCCTCATGCCCGGTGCTTAGCATCTGGTGCGTGAGAAATTTTGATTTTGGGCCCCCCAATATCGGGTGAGATGGGCCATGCTCTGATAACATGTGAAATTAGGTCTTAGGCCTAATTCACACCCCAAAGGCTATAACCTCAAAAGGGGGAGGATTGCTCAAGCCTTGTAAAGAGTCCACCCATCTCATTAACCACCGATGTGAGACTTTTGTCATTTTTTAACAGCTATAAAGTAACCTTTCTTCTTTACAGAAGACGGTCTCTTTCTTGTTTCAACCCAAGTATGGACTTTGGTTGTATTTCCGAATTTTCCTTTTAAGATTAGTTTTGGCACCAAACTCTTTGAAAATCAGCTATGATTTTGAACTCATTTCATCATCATCCCTTTTTCTTTTGCTCAAAGTTGTCCTCGCCTTTTAAGTGATTAGCATTTTGTTGCGTGTTTTTTTATTCTCCATTACTTTTTGTAATTAAAATTCTTTACTAAATGAAAACCAAAAATTAACCTTGCAAGGTACATATTGACAAGAAGCCTATCTAATACTGCGGAAGTTTCTTTTGACATAGTAACCAGAGACAAATTTGCAACTTTTTTCTTTCCGCTCAAATTCTATAATCATATTCCTGGATTTTGTTACCTGGAGTAACTTAAAATATGTTTAAATAGATCATTGCTTTGGTCTCTTGTATTTATATTTGAATAACCTTTCTTGTTATCTGTTCAAAACAGAGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCT</genome_strand>
        <mrna_strand>AGATACTATGATGGTTTACAAAGATGTTTGGGATTGTATTCTGAAAAGGGGCAATATACCGCTGATGAAATTGATAGACTAGAAAATTTGTACAGAGTACTTGCCCATCAGTATAGTAGATCATCTGCTGTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCACTTGATTTTCTCCAAGATGACAAGTTTCGAGAAGCTGCAGATAATTATATTCGACCTCTTCTGACAAAA..............................................................................GGGGTTCCTTCTTTGTTTTCTGATCTTTATCCGCTGTATGATCATCCTGGCAAG............................................................................................................GCTGATATTCTAGGGGAATTTGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAG.....................................................................................CACTATGATAGACGTGAACAGTATGACATTGCTCTTACTAAAATTGACGAGGCAATTGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAAGCTAGGTGTATGGATCTTGCAGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410848" ref_strand="+" ref_description="SGN-E410848 [PPI-18-C2]">
      <seq>gaaattgatagactagaaaatttgtacagagtacttgcccatcagtatagtagatcatctgctgtaaagagaattccacttgattttctccaagatgacaagtttcgagaagctgcagataattatattcgacctcttctgacaaaaggggttccttctttgttttctgatctttatccgctgtatgatcatcctggcaaggctgatattctaggggaatttgttttgaagcttgaacaatcacttaagagtactggtggataccctgggagagtggagaaggaacccccttcaacacttatgtggactttattttatttggctcagcactatgatagacgtgaacagtatgacattgctcttactaaaattgacgaggcaattgagcacactccaactgtaatagatttatactctgtcaagagccgcatactaaagcatgctggtgacttggcagcagctgctgcacttgctgatgaagctaggtgtatggatcttgcagatcgatatgttaatagcgaatgtgttaagcgcatgcttcaggcagatcaggtcacattggctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="32320" stop="38495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32620" g_stop="32688" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32689" i_stop="34636" i_length="1948">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34637" g_stop="34714" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34715" i_stop="34792" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34793" g_stop="34846" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="201" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34847" i_stop="34954" i_length="108">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34955" g_stop="35025" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="272" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35026" i_stop="35943" i_length="918">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35944" g_stop="35998" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="327" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35999" i_stop="36083" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36084" g_stop="36179" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="423" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36180" i_stop="38064" i_length="1885">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38065" g_stop="38193" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="552" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38314" g_stop="38329" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="568" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E410848" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32620" e_stop="32688"/>
          <exon e_start="34637" e_stop="34714"/>
          <exon e_start="34793" e_stop="34846"/>
          <exon e_start="34955" e_stop="35025"/>
          <exon e_start="35944" e_stop="35998"/>
          <exon e_start="36084" e_stop="36179"/>
          <exon e_start="38065" e_stop="38193"/>
          <exon e_start="38314" e_stop="38329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGATAGACTAGAAAATTTGTACAGAGTACTTGCCCATCAGTATAGTAGATCATCTGCTGTAAAGGTAATTGACTTTATTCTTTCTCAAAAAAATGTTCTCCCATTGCTGGCTTGTACTAGCCTCTATGTCACGTTTTTCTTTGTTTTCTCAACATGGTCGAGAAAACAAAGAGAAACGTGCTAAGCATTATACATTTAATGTTAACCTGCAACGTTCTGTTGATATTCTAATGTTGCAACAATAGGCTTAGCATTTTGTTGTATGTCCTAGACATCACGTTTTTATGAATAGTATAGATTATATCACACACAATCGAAGAACTTAAGACAAGGGGGCATTCTTGGTGAAGAATTTCCAACTTGGTCTTTTTTGGAGATTTTAGTTTTACTTCTGTTACATGGCTCCTCACTTTCAAATGTTATATTCCTTGAAGTCGGGGTGCTTTATATATTTTAAAAAAGAAAAAGACCTAAAGCTTGTGTTCTATCTCTACATTTAACCATGGAAATGGAGGACTCCAGTTCTCTTGTACGGTATGAAGACCACGGAAGGTGCTTTAGTTTCGTGACAATAGCTGCCAACCTCTTCTATGGTGATTCTTCCTCGTCTCGTGTTCGAGTACCCCTGCTACAAAGTCGCTGTTGTTAGTGAGCTCTTTACCCCCCAATGTGGGACTTCCGAGGGCAAATTTGGATTTAGTCGGGTTCTTATGTGGGTACTGGACACCGGTTAGGAAACCAAAAAAAAATTTTACTTTCTCATCTGTATTTGTTCATTTATATTCAGGAAGTTGTGACTTAAGCATCTACTTTGAAGAAACTGCTGTGTATATTTAGTTATGTCAGGTAATCAAAGATCATGTTCTTCCCCTTCAAATTCTCTGTTTTCCTTTATTCCCAGAGCACCCAAATAAGTGCTAGTGGTATGGATCATTCCCCCGATTGTCTTAGGTATTGCCCATTGTTCTCCAACCAAATTCAGAACTTCCACATTAACTGACTGGCCATCTTGTAGTGAACTAGTAAAATGGTTGAGGTCTTTACTGGAACAATGGCACAGCTAATAAATTTTCCTTTCCTCAAATTCTCAGCCATCAATGTTTCTTCCTAAGCTGCCAACCACGTAAAGAAGCAAACCTCTTCCTGTGTCCCTTTCGGCATCCACACTGATATGTATTGAAATCCAGAATCCTCCCTCTTCAATAGCCTGTTGTAGAAGGACGTGATTGAAGAAATCCAAAATCCAGGATCCTCCCTCTTCAATAGCCTGCTGTAGGAGGACATCTCTGAGAACAACCCGTGTCCCCTCTCTTCCACTTCCATAAATCCTGTTTCATTTAGGTGATGTTCTTTCTGTAAGTACCACCTCCATCAGTGTCTGTAGGTCCTTTACCTCCCCTCCTCCTGGTAAACTTCTCCTGAATTCAAGTCCCATACTTGTCCCTCCATCAGTCTTTGTTGCCCATAGAATGTATCAGACTGTTTTGTCTTGTAATTTTTATGACTTGCATGTGCACATTTGTTGTTATTCTACCCCTTTGTTTGATAAAAGTGACATTTTATTATCAATCTAGACCTTTCATAATCTTTGTGTGACTGAGAGCCATAAATGAAGTTGTTGTGTAGTAGCCCCGGGATTTGGTCAGTGCTGAGTAGTGGTAAGTACGCTGTAGGATCTGTGGGTAGGGGCACCTCACAGGTTCAAACCTTTCTGCAGACAAAAATGAGGTATTTAAGCGGAAAAGGGTGTAGTGGTCTCATTGTCTACTGAGTTCTGAATCGCGTGCCACTGGCCTCAGAGATCACTCAGATGTTCAAAGAAATGAAGTTCTTGTGGTTTTGTAGCCAAAAACATTCTTCTTTGTTTGATTATGGAGAAGTCTTTATCCCATTTTTTTGATCTAAGAAAGGGATGATCGTATTAAACATCATTTTTTTCAGTATGCATAATAGACTTCTTTGTTTGTTTCTGCGTCTTATTCTTCTGTTTCCTTTTCCATGTTCTTTTGCAGAGGATTCCACTTGATTTTCTCCAAGATGACAAGTTTCGAGAAGCTGCAGATAATTATATTCGACCTCTTCTGACAAAAGTATTTATTCTTGGCACTCCGTTAGGTTCCCTTGGTCTTAGAGCTGAGCTGATACTTTTTTTACTGATGCATATGTAGGGGGTTCCTTCTTTGTTTTCTGATCTTTATCCGTTATATGATCATCCTGGCAAGGTCAGTGCAGATGCTTCTTGATGTGCTTTGACTTACAGAGTAATGCATAATTATTGTAGCCTGTCTATATTTTTTGGATTGATTTCTGGTTCTCTTAATATCTTACAGGCTGATATTCTAGGGGAAATAGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAGGTATACATTCGCCTAATTTTTTGGTCTATGTTGCACTATGGCATGTTTCTTGATTCTAATGAAGGATTAACTAAATTGCTGTACTAACCTTATTTAACCACTTCTACCTGAACTGAGTTAATTTTTACTTGTTATTCTTGGTAATGTTTCATGTCAGTAAGAAGCTTGTCTAGTCTGTATGCTGACCATTTTGTACTATCTCATCCCTTCTGAACCACCTCGAGGGCTTGACAATTCAGTCTCTGATGAGTATCTTGAGTCAAGACTAGACCTGTTTTGAAGCAGTTCCTGGATAAGCAACTAACTTAGTGTTGTGCAAATAAGCAACTAACTAAGTGTTGTGCAAATTGGAAGGTAGTCCGGTGTTTCTGAAGAAATTTCTATCTATGAACCGAACAAAAAGATACTTAAATACAATTTTGAGATCACAGTGTTTCTTAATAATTTGCCAGTTTCTATTTCTTTTCTGGAAACTATTTTTTGAGAAGATTTCCAGAAACTATTTTAGCAGAACATATTTTCCTTTGCGTTGGTAACCTTTATATAAATGATGTTATATTGAGAGTGTGAAAGAGCAGACAAGATGTTAATAGTTAGTGACATATGTTCATGTGGTGTAGGGTTTCATTGTTTTTGAAAGATCACATGATATAGTCGTGCTTCTGGCTGCTATATCCATCGACCACTGTATAAAAAAACAGTGTAACCATCTAACTTGGAGTGATGGTGATTGACTTATGTCAAAGCCAAGAAATTCAATTAAACTAAGTAACCAACTCAATTGGGACAGAATTTGCCTTGGTTAATGCGTAAATGGACCATGTGCATGCCTATTGTAATACTTTATGGTCTTTTGTGTGATTTGCTATTTTTATGGGGTTATATACTTACAGATGTAACCTTATGCTTTAAGTGCAGAGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAGGTTTGCTCACTCGGCTCTGTTTAGTCAAACCTTTTCTGTGTTTACTTTTCACTCTCCAAATTGATGAAAGACTATGTTCCTGCAGCACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAGGTATATTGGCTTATTATCATTTTCTTTGGTCCCCTTTTGCATCCTTTTGACTTGAATGTTTAGTAAGAAGTTGCTTTTGGTCAAGATTCTGAAGTAAAATGTGCTCCAGTCTCTTTCCATTCTCTTACAATAGAATCAAGTGCCCCTTTTAATATCTTTTTTTTGAGAAGGATGCCCCTTTTAATTTTTCACCCAAGGGTGGGGCTTGCTGTCCTTTCCGGACCCCAGTCCCCCACCTGTTGGATTACACACTGGGAATGTTGTTGTTGTTGTTGCCTAAGCATCAATAGGCAGAGTTGCCCCCATAATTCTGCTGGTGGGTGATAGAATGTATCTGGTAGAATAGTTGAGGTGCGGACAAACTGTCTTGGACACAATTGTTATAAAAGAGAAGAAAAAATAATTTAAATAGGTGCTAATTGGGATTGATTCTTAGTAGTTATTAGTTACACTAGCATTACCAGTTCACCACCAGTGTCTGGTACGTCTCTTTTTTTTCTTTCCGTTAGAGATGTTATGTTAGTGCAAGTAAGTGGGTGAGATTTAGAAAACCTCTGTTTTAGAAGCACCTAAAGGCAAATTGTTTTCATACACAAATGGGTCATGAGTGAGTGGAATAGGAACAAATGATTTGTACAGTGACCTCAGCTACGTCTGGAATCGTGGTATAGTTGACTGATTGATATCTTGAAGATCAGTAACCCTTTATGCCCTATCCAGTATCATAAAACCTGTCACTAAATGTAGGAAAGCGGAAGGATCTTGAATAATAATATCCATTTCTTAATTCTTATATAGCTGATAGAGGCTAGAGCTTCAAATTGACTTCTGAGGAACTAATTTTGACCCTTAGGATGATTGCTGGATTTCTGAATTTCTGTTTATTTCTTGCTGTTTATGATGTTATATGCTTGAAGTTGGATCTGTGTGATGAAGGAGAAGTAAAATTTGTTATTTTTTTTCTTTACACCAAAAATTAAATATAGCTAAATACAATTGCTTTTGTCAAAGCTCTAGCGTTACTGTGAAATTAGGTCTTAGGCCTAACTCACCCCCCAAAAACTAGCTCAATGGGAGGAGGATTGCGCAACTTATAAGGAGTCCACTCATCTCATTAACCACCGATGTGGGGCTTTTGTCATTCTTTATCACCCCTCCTCATGCCCGGTGCTTAGCATCTGGTGCGTGAGAAATTTTGATTTTGGGCCCCCCAATATCGGGTGAGATGGGCCATGCTCTGATAACATGTGAAATTAGGTCTTAGGCCTAATTCACACCCCAAAGGCTATAACCTCAAAAGGGGGAGGATTGCTCAAGCCTTGTAAAGAGTCCACCCATCTCATTAACCACCGATGTGAGACTTTTGTCATTTTTTAACAGCTATAAAGTAACCTTTCTTCTTTACAGAAGACGGTCTCTTTCTTGTTTCAACCCAAGTATGGACTTTGGTTGTATTTCCGAATTTTCCTTTTAAGATTAGTTTTGGCACCAAACTCTTTGAAAATCAGCTATGATTTTGAACTCATTTCATCATCATCCCTTTTTCTTTTGCTCAAAGTTGTCCTCGCCTTTTAAGTGATTAGCATTTTGTTGCGTGTTTTTTTATTCTCCATTACTTTTTGTAATTAAAATTCTTTACTAAATGAAAACCAAAAATTAACCTTGCAAGGTACATATTGACAAGAAGCCTATCTAATACTGCGGAAGTTTCTTTTGACATAGTAACCAGAGACAAATTTGCAACTTTTTTCTTTCCGCTCAAATTCTATAATCATATTCCTGGATTTTGTTACCTGGAGTAACTTAAAATATGTTTAAATAGATCATTGCTTTGGTCTCTTGTATTTATATTTGAATAACCTTTCTTGTTATCTGTTCAAAACAGAGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAGGTGCTTTCTTATGTGTTATCTCTTTCACTTGACAGTATTTTCTCTTCTTGTTGTCAATTCTTATGGATTACCTTGGTTCCTAATTTGTCTTCCAACTACTTTGTGGGCATATGACTGAAGGTCACTTTGGCTGAAA</genome_strand>
        <mrna_strand>GAAATTGATAGACTAGAAAATTTGTACAGAGTACTTGCCCATCAGTATAGTAGATCATCTGCTGTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCACTTGATTTTCTCCAAGATGACAAGTTTCGAGAAGCTGCAGATAATTATATTCGACCTCTTCTGACAAAA..............................................................................GGGGTTCCTTCTTTGTTTTCTGATCTTTATCCGCTGTATGATCATCCTGGCAAG............................................................................................................GCTGATATTCTAGGGGAATTTGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAG.....................................................................................CACTATGATAGACGTGAACAGTATGACATTGCTCTTACTAAAATTGACGAGGCAATTGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAAGCTAGGTGTATGGATCTTGCAGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCAGGCAGATCAG........................................................................................................................GTCACATTGGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478677" ref_strand="+" ref_description="SGN-E478677 [cSTD-6-D23]">
      <seq>gttccttctttgttttctgatctttatccgctgtatgatcatcctggcaaggccgatattctaggggcatttgttttgaagcttgaacaatcacttaagagtactggtggataccctgggagagtggagaaggaacccccttcaacacttatgtggactttattttatttggctcagcactatgatagacgtgaacagtatgacattgctcttactaaaattgacgaggcaattgagcacactccaactgtaatagatttatactctgtcaagagtcgcatactaaagcatgctggtgacttggcagcagctgctgcacttgctgatgaagctaggtgtatggatcttgcagatcgatatgtaaatagcgaatgtgttaagcgcatgcttcaggcagatcaggtcacattggctgaaaagactgctgtactattcaccaaagacggngagcaacacaataacctttatgatatgcagtgcatgtggtatgaactagcatcaggggaaagttatcttcgccaaggtgagctgggaaggtccttaaagaagtttctggcagtggagaagcattacgcggatatcacggaggaccagtttgattttcactcctactgcctaagaaaaatgactttgcgggcctacgtggaaatgttgaagtttcaagatcggcttcattcacatgcgtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34496" stop="38993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34796" g_stop="34846" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34847" i_stop="34954" i_length="108">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34955" g_stop="35025" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="122" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35026" i_stop="35943" i_length="918">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35944" g_stop="35998" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="177" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35999" i_stop="36083" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36084" g_stop="36179" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="273" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36180" i_stop="38064" i_length="1885">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38065" g_stop="38193" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="402" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38314" g_stop="38396" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="485" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38489" g_stop="38693" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="690" r_length="205" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E478677" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34796" e_stop="34846"/>
          <exon e_start="34955" e_stop="35025"/>
          <exon e_start="35944" e_stop="35998"/>
          <exon e_start="36084" e_stop="36179"/>
          <exon e_start="38065" e_stop="38193"/>
          <exon e_start="38314" e_stop="38396"/>
          <exon e_start="38489" e_stop="38693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCTTTGTTTTCTGATCTTTATCCGTTATATGATCATCCTGGCAAGGTCAGTGCAGATGCTTCTTGATGTGCTTTGACTTACAGAGTAATGCATAATTATTGTAGCCTGTCTATATTTTTTGGATTGATTTCTGGTTCTCTTAATATCTTACAGGCTGATATTCTAGGGGAAATAGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAGGTATACATTCGCCTAATTTTTTGGTCTATGTTGCACTATGGCATGTTTCTTGATTCTAATGAAGGATTAACTAAATTGCTGTACTAACCTTATTTAACCACTTCTACCTGAACTGAGTTAATTTTTACTTGTTATTCTTGGTAATGTTTCATGTCAGTAAGAAGCTTGTCTAGTCTGTATGCTGACCATTTTGTACTATCTCATCCCTTCTGAACCACCTCGAGGGCTTGACAATTCAGTCTCTGATGAGTATCTTGAGTCAAGACTAGACCTGTTTTGAAGCAGTTCCTGGATAAGCAACTAACTTAGTGTTGTGCAAATAAGCAACTAACTAAGTGTTGTGCAAATTGGAAGGTAGTCCGGTGTTTCTGAAGAAATTTCTATCTATGAACCGAACAAAAAGATACTTAAATACAATTTTGAGATCACAGTGTTTCTTAATAATTTGCCAGTTTCTATTTCTTTTCTGGAAACTATTTTTTGAGAAGATTTCCAGAAACTATTTTAGCAGAACATATTTTCCTTTGCGTTGGTAACCTTTATATAAATGATGTTATATTGAGAGTGTGAAAGAGCAGACAAGATGTTAATAGTTAGTGACATATGTTCATGTGGTGTAGGGTTTCATTGTTTTTGAAAGATCACATGATATAGTCGTGCTTCTGGCTGCTATATCCATCGACCACTGTATAAAAAAACAGTGTAACCATCTAACTTGGAGTGATGGTGATTGACTTATGTCAAAGCCAAGAAATTCAATTAAACTAAGTAACCAACTCAATTGGGACAGAATTTGCCTTGGTTAATGCGTAAATGGACCATGTGCATGCCTATTGTAATACTTTATGGTCTTTTGTGTGATTTGCTATTTTTATGGGGTTATATACTTACAGATGTAACCTTATGCTTTAAGTGCAGAGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAGGTTTGCTCACTCGGCTCTGTTTAGTCAAACCTTTTCTGTGTTTACTTTTCACTCTCCAAATTGATGAAAGACTATGTTCCTGCAGCACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAGGTATATTGGCTTATTATCATTTTCTTTGGTCCCCTTTTGCATCCTTTTGACTTGAATGTTTAGTAAGAAGTTGCTTTTGGTCAAGATTCTGAAGTAAAATGTGCTCCAGTCTCTTTCCATTCTCTTACAATAGAATCAAGTGCCCCTTTTAATATCTTTTTTTTGAGAAGGATGCCCCTTTTAATTTTTCACCCAAGGGTGGGGCTTGCTGTCCTTTCCGGACCCCAGTCCCCCACCTGTTGGATTACACACTGGGAATGTTGTTGTTGTTGTTGCCTAAGCATCAATAGGCAGAGTTGCCCCCATAATTCTGCTGGTGGGTGATAGAATGTATCTGGTAGAATAGTTGAGGTGCGGACAAACTGTCTTGGACACAATTGTTATAAAAGAGAAGAAAAAATAATTTAAATAGGTGCTAATTGGGATTGATTCTTAGTAGTTATTAGTTACACTAGCATTACCAGTTCACCACCAGTGTCTGGTACGTCTCTTTTTTTTCTTTCCGTTAGAGATGTTATGTTAGTGCAAGTAAGTGGGTGAGATTTAGAAAACCTCTGTTTTAGAAGCACCTAAAGGCAAATTGTTTTCATACACAAATGGGTCATGAGTGAGTGGAATAGGAACAAATGATTTGTACAGTGACCTCAGCTACGTCTGGAATCGTGGTATAGTTGACTGATTGATATCTTGAAGATCAGTAACCCTTTATGCCCTATCCAGTATCATAAAACCTGTCACTAAATGTAGGAAAGCGGAAGGATCTTGAATAATAATATCCATTTCTTAATTCTTATATAGCTGATAGAGGCTAGAGCTTCAAATTGACTTCTGAGGAACTAATTTTGACCCTTAGGATGATTGCTGGATTTCTGAATTTCTGTTTATTTCTTGCTGTTTATGATGTTATATGCTTGAAGTTGGATCTGTGTGATGAAGGAGAAGTAAAATTTGTTATTTTTTTTCTTTACACCAAAAATTAAATATAGCTAAATACAATTGCTTTTGTCAAAGCTCTAGCGTTACTGTGAAATTAGGTCTTAGGCCTAACTCACCCCCCAAAAACTAGCTCAATGGGAGGAGGATTGCGCAACTTATAAGGAGTCCACTCATCTCATTAACCACCGATGTGGGGCTTTTGTCATTCTTTATCACCCCTCCTCATGCCCGGTGCTTAGCATCTGGTGCGTGAGAAATTTTGATTTTGGGCCCCCCAATATCGGGTGAGATGGGCCATGCTCTGATAACATGTGAAATTAGGTCTTAGGCCTAATTCACACCCCAAAGGCTATAACCTCAAAAGGGGGAGGATTGCTCAAGCCTTGTAAAGAGTCCACCCATCTCATTAACCACCGATGTGAGACTTTTGTCATTTTTTAACAGCTATAAAGTAACCTTTCTTCTTTACAGAAGACGGTCTCTTTCTTGTTTCAACCCAAGTATGGACTTTGGTTGTATTTCCGAATTTTCCTTTTAAGATTAGTTTTGGCACCAAACTCTTTGAAAATCAGCTATGATTTTGAACTCATTTCATCATCATCCCTTTTTCTTTTGCTCAAAGTTGTCCTCGCCTTTTAAGTGATTAGCATTTTGTTGCGTGTTTTTTTATTCTCCATTACTTTTTGTAATTAAAATTCTTTACTAAATGAAAACCAAAAATTAACCTTGCAAGGTACATATTGACAAGAAGCCTATCTAATACTGCGGAAGTTTCTTTTGACATAGTAACCAGAGACAAATTTGCAACTTTTTTCTTTCCGCTCAAATTCTATAATCATATTCCTGGATTTTGTTACCTGGAGTAACTTAAAATATGTTTAAATAGATCATTGCTTTGGTCTCTTGTATTTATATTTGAATAACCTTTCTTGTTATCTGTTCAAAACAGAGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAGGTGCTTTCTTATGTGTTATCTCTTTCACTTGACAGTATTTTCTCTTCTTGTTGTCAATTCTTATGGATTACCTTGGTTCCTAATTTGTCTTCCAACTACTTTGTGGGCATATGACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTGGTAAGTCTCTTACTGGAGCCCGATCATGGTCAGAATGACCAAGTTCTGTGTGTGAGTGTCTTACTGGTCTTGTTTAATTTTTTATATTTAAGGTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTT</genome_strand>
        <mrna_strand>GTTCCTTCTTTGTTTTCTGATCTTTATCCGCTGTATGATCATCCTGGCAAG............................................................................................................GCCGATATTCTAGGGGCATTTGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAG.....................................................................................CACTATGATAGACGTGAACAGTATGACATTGCTCTTACTAAAATTGACGAGGCAATTGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAAGCTAGGTGTATGGATCTTGCAGATCGATATGTAAATAGCGAATGTGTTAAGCGCATGCTTCAGGCAGATCAG........................................................................................................................GTCACATTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGNGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG............................................................................................GTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCCTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTTTGCGGGCCTACGTGGAAATGTTGAAGTTTCAAGATCGGCTTCATTCACATGCGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200698" ref_strand="+" ref_description="SGN-E200698 [cLEC-9-N1]">
      <seq>cttatgtggactttattttatttggctcagcactatgatagacgtgaacagtatgacattgctctgactaaaattgacgaggcaatcgagcacactccaactgtaatagatttatactctgtcaagagccgcatactaaagcatgctggtgacttggcagcagctgctgcacttgctgatgaggctaggtgtatggatcttgctgatcgatatgttaatagcgaatgtgttaagcgcatgcttcaggcagatcaggtcactttggctgaaaagactgctgtactattcaccaaagacggggagcaacacaataacctttatgatatgcagtgcatgtggtatgaactagcatcaggggaaagttatcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="35669" stop="38821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35969" g_stop="35998" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35999" i_stop="36083" i_length="85">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36084" g_stop="36179" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="126" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36180" i_stop="38064" i_length="1885">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38065" g_stop="38193" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38314" g_stop="38396" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="338" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38489" g_stop="38521" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="371" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E200698" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35969" e_stop="35998"/>
          <exon e_start="36084" e_stop="36179"/>
          <exon e_start="38065" e_stop="38193"/>
          <exon e_start="38314" e_stop="38396"/>
          <exon e_start="38489" e_stop="38521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTGGACTTTATTTTATTTGGCTCAGGTTTGCTCACTCGGCTCTGTTTAGTCAAACCTTTTCTGTGTTTACTTTTCACTCTCCAAATTGATGAAAGACTATGTTCCTGCAGCACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAGGTATATTGGCTTATTATCATTTTCTTTGGTCCCCTTTTGCATCCTTTTGACTTGAATGTTTAGTAAGAAGTTGCTTTTGGTCAAGATTCTGAAGTAAAATGTGCTCCAGTCTCTTTCCATTCTCTTACAATAGAATCAAGTGCCCCTTTTAATATCTTTTTTTTGAGAAGGATGCCCCTTTTAATTTTTCACCCAAGGGTGGGGCTTGCTGTCCTTTCCGGACCCCAGTCCCCCACCTGTTGGATTACACACTGGGAATGTTGTTGTTGTTGTTGCCTAAGCATCAATAGGCAGAGTTGCCCCCATAATTCTGCTGGTGGGTGATAGAATGTATCTGGTAGAATAGTTGAGGTGCGGACAAACTGTCTTGGACACAATTGTTATAAAAGAGAAGAAAAAATAATTTAAATAGGTGCTAATTGGGATTGATTCTTAGTAGTTATTAGTTACACTAGCATTACCAGTTCACCACCAGTGTCTGGTACGTCTCTTTTTTTTCTTTCCGTTAGAGATGTTATGTTAGTGCAAGTAAGTGGGTGAGATTTAGAAAACCTCTGTTTTAGAAGCACCTAAAGGCAAATTGTTTTCATACACAAATGGGTCATGAGTGAGTGGAATAGGAACAAATGATTTGTACAGTGACCTCAGCTACGTCTGGAATCGTGGTATAGTTGACTGATTGATATCTTGAAGATCAGTAACCCTTTATGCCCTATCCAGTATCATAAAACCTGTCACTAAATGTAGGAAAGCGGAAGGATCTTGAATAATAATATCCATTTCTTAATTCTTATATAGCTGATAGAGGCTAGAGCTTCAAATTGACTTCTGAGGAACTAATTTTGACCCTTAGGATGATTGCTGGATTTCTGAATTTCTGTTTATTTCTTGCTGTTTATGATGTTATATGCTTGAAGTTGGATCTGTGTGATGAAGGAGAAGTAAAATTTGTTATTTTTTTTCTTTACACCAAAAATTAAATATAGCTAAATACAATTGCTTTTGTCAAAGCTCTAGCGTTACTGTGAAATTAGGTCTTAGGCCTAACTCACCCCCCAAAAACTAGCTCAATGGGAGGAGGATTGCGCAACTTATAAGGAGTCCACTCATCTCATTAACCACCGATGTGGGGCTTTTGTCATTCTTTATCACCCCTCCTCATGCCCGGTGCTTAGCATCTGGTGCGTGAGAAATTTTGATTTTGGGCCCCCCAATATCGGGTGAGATGGGCCATGCTCTGATAACATGTGAAATTAGGTCTTAGGCCTAATTCACACCCCAAAGGCTATAACCTCAAAAGGGGGAGGATTGCTCAAGCCTTGTAAAGAGTCCACCCATCTCATTAACCACCGATGTGAGACTTTTGTCATTTTTTAACAGCTATAAAGTAACCTTTCTTCTTTACAGAAGACGGTCTCTTTCTTGTTTCAACCCAAGTATGGACTTTGGTTGTATTTCCGAATTTTCCTTTTAAGATTAGTTTTGGCACCAAACTCTTTGAAAATCAGCTATGATTTTGAACTCATTTCATCATCATCCCTTTTTCTTTTGCTCAAAGTTGTCCTCGCCTTTTAAGTGATTAGCATTTTGTTGCGTGTTTTTTTATTCTCCATTACTTTTTGTAATTAAAATTCTTTACTAAATGAAAACCAAAAATTAACCTTGCAAGGTACATATTGACAAGAAGCCTATCTAATACTGCGGAAGTTTCTTTTGACATAGTAACCAGAGACAAATTTGCAACTTTTTTCTTTCCGCTCAAATTCTATAATCATATTCCTGGATTTTGTTACCTGGAGTAACTTAAAATATGTTTAAATAGATCATTGCTTTGGTCTCTTGTATTTATATTTGAATAACCTTTCTTGTTATCTGTTCAAAACAGAGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAGGTGCTTTCTTATGTGTTATCTCTTTCACTTGACAGTATTTTCTCTTCTTGTTGTCAATTCTTATGGATTACCTTGGTTCCTAATTTGTCTTCCAACTACTTTGTGGGCATATGACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTGGTAAGTCTCTTACTGGAGCCCGATCATGGTCAGAATGACCAAGTTCTGTGTGTGAGTGTCTTACTGGTCTTGTTTAATTTTTTATATTTAAGGTATGAACTAGCATCAGGGGAAAGTTATCTTCG</genome_strand>
        <mrna_strand>CTTATGTGGACTTTATTTTATTTGGCTCAG.....................................................................................CACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCAGGCAGATCAG........................................................................................................................GTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG............................................................................................GTATGAACTAGCATCAGGGGAAAGTTATCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248357" ref_strand="+" ref_description="SGN-E248357 [cLEG-1-C5]">
      <seq>tctgtcaagagccgcatactaaaaaatgctggtgacttggcagcanntnntngggttgctgttgaggctaggtgtatggatcttgctgatcgatatgttaatagcgaatgtgttaagcgcatgcttcaggcagatcaggtcactttggctgaaaagactgctgtactattcaccaaagacggggagcaacacaataacctttatgatatgcagtgcatgtggtatgaactagcatcaggggaaagttatcttcgccaaggtgagctgggaaggtctttaaagaagtttctggcagtggagaagcattacgcggatatcacggaggaccagtttgattttcactcctactgcctaagaaaaatgactctgagggcctacgtggaaatgttgaagtttcaagaccggcttcattcacatgcatattttcgcaaagcagctagtggtgctatcagatgctatctgaagctgtatgattctcctttgaagtcagcatctgaagaggatgatgcaatgtccaagttgcctccttttcagaaaaagaaattaaagcaaaaactgaggaaagcagaagcacgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37763" stop="39380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38065" g_stop="38193" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="138" r_length="129" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38314" g_stop="38396" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="221" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38489" g_stop="38719" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="452" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38954" g_stop="39080" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="579" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E248357" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38065" e_stop="38193"/>
          <exon e_start="38314" e_stop="38396"/>
          <exon e_start="38489" e_stop="38719"/>
          <exon e_start="38954" e_stop="39080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAGGTGCTTTCTTATGTGTTATCTCTTTCACTTGACAGTATTTTCTCTTCTTGTTGTCAATTCTTATGGATTACCTTGGTTCCTAATTTGTCTTCCAACTACTTTGTGGGCATATGACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTGGTAAGTCTCTTACTGGAGCCCGATCATGGTCAGAATGACCAAGTTCTGTGTGTGAGTGTCTTACTGGTCTTGTTTAATTTTTTATATTTAAGGTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAGGTACTGATTATTGACTTGCTCAATCTTCAAATTTTTGGTTGCTCTCAACTATGTGGTTCTACTTTGTATTATTAGTGAACTTTCTGTTAAAGTGGAAACAATAGAAGGACTGGAACTCTTCTGCTTATAGTATCCTAGCTTTCTGGTTTTGATTACATGCAACTTGCAAGCTTACTGAGAATTACTTTGCTGAAACTCTTTATGTTTTTATGCTTTGTTTTGCCTCTATATTAGATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCT</genome_strand>
        <mrna_strand>AGCCGCATACTAAAAAATGCTGGTGACTTGGCAGCANNTNNTNGGGTTGCTGTTGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCAGGCAGATCAG........................................................................................................................GTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG............................................................................................GTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAG..........................................................................................................................................................................................................................................ATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTTTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248299" ref_strand="+" ref_description="SGN-E248299 [cLEG-1-C15]">
      <seq>tggatcttgctgatcgatatgttaatagcgaatgtgttaagcgcatgcttcaggcagatcaggtcactttggctgaaaagactgctgtactattcaccaaagacggggagcaacacaataacctttatgatatgcagtgcatgtggtatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37832" stop="38701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38132" g_stop="38193" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38314" g_stop="38396" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="145" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38489" g_stop="38497" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="154" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E248299" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38132" e_stop="38193"/>
          <exon e_start="38314" e_stop="38396"/>
          <exon e_start="38489" e_stop="38497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAGGTGCTTTCTTATGTGTTATCTCTTTCACTTGACAGTATTTTCTCTTCTTGTTGTCAATTCTTATGGATTACCTTGGTTCCTAATTTGTCTTCCAACTACTTTGTGGGCATATGACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTGGTAAGTCTCTTACTGGAGCCCGATCATGGTCAGAATGACCAAGTTCTGTGTGTGAGTGTCTTACTGGTCTTGTTTAATTTTTTATATTTAAGGTATGAACT</genome_strand>
        <mrna_strand>TGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCAGGCAGATCAG........................................................................................................................GTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG............................................................................................GTATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326162" ref_strand="+" ref_description="SGN-E326162 [cTOC-16-G5]">
      <seq>gactgaaggtcactttggctgaaaagactgctgtactattcaccaaagacggggagcaacacaataacctttatgatatgcagtgcatgtggtatgaactagcatcaggggaaagttatcttcgccaaggtgagctgggaaggtctttaaagaagtttctggcagtggagaagcattacgcggatatcacggaggaccagtttgattttcactcctactgcctaagaaaaatgactctgagggcctacgtggaaatgttgaagtttcaagaccggcttcattcacatgcatattttcgcaaagcagctagtggtgctatcagatgctatctgaagctgtatgattctcctttgaagtcagcatctgaagaggatgatgcaatgtccaagttgcctccttctcagaaaaagaaattaaagcaaaaactgaggaaagcagaagcacgagctaagaaagatgcagaagtcaaaattgaggaatccaatgcaactagtgctactaaatctggaaagcgccatgtgaagcctgtagatcctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38006" stop="39550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38306" g_stop="38396" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38489" g_stop="38719" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="322" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38954" g_stop="39086" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="455" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39166" g_stop="39250" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="540" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E326162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38306" e_stop="38396"/>
          <exon e_start="38489" e_stop="38719"/>
          <exon e_start="38954" e_stop="39086"/>
          <exon e_start="39166" e_stop="39250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTGGTAAGTCTCTTACTGGAGCCCGATCATGGTCAGAATGACCAAGTTCTGTGTGTGAGTGTCTTACTGGTCTTGTTTAATTTTTTATATTTAAGGTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAGGTACTGATTATTGACTTGCTCAATCTTCAAATTTTTGGTTGCTCTCAACTATGTGGTTCTACTTTGTATTATTAGTGAACTTTCTGTTAAAGTGGAAACAATAGAAGGACTGGAACTCTTCTGCTTATAGTATCCTAGCTTTCTGGTTTTGATTACATGCAACTTGCAAGCTTACTGAGAATTACTTTGCTGAAACTCTTTATGTTTTTATGCTTTGTTTTGCCTCTATATTAGATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAAGTACTCAAATTTGCTACTTTTTGTTCTTTGAAAATTTCAACTTAGTAATAGGTGCCTTAATCTTTTGAATTATGTTTAGGATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATC</genome_strand>
        <mrna_strand>GACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG............................................................................................GTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAG..........................................................................................................................................................................................................................................ATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAA...............................................................................GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484299" ref_strand="+" ref_description="SGN-E484299 [cSTE-12-J4]">
      <seq>gggaaaagttatcttcgccaaggtgagctgggaaaggtccttaaagaaagtttctggcagtggagaagcattacgcggatatcacggaggaccagtttgattttcactcctactgcctaagaaaaatgactctgcgggcctacgtggaaatgttgaagtttcaagatcggcttcattcacatgcgtattttcgcaaagcagctagtggtgctatcagatgctatctgaagctgtacgattctcctttgaagtcagcatctgaagaggatgatgcaatgtccaagttgcctccttctcagaaaaagaaattaaagcaaaaactgaggaaggcagaagcacgagctaagaaagatgcagaagtcaaaattgaggaatccaatgcaactagtgctactaaatctggaaagcgccatgtgaagcctgtagatcctgatccacatggtgaaaaattgattcagactgaagatcctcntgcagaagcttcaaagtacctcaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38206" stop="40257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38505" g_stop="38719" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38954" g_stop="39086" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="350" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39166" g_stop="39273" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="458" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39915" g_stop="39957" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="501" r_length="43" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E484299" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38505" e_stop="38719"/>
          <exon e_start="38954" e_stop="39086"/>
          <exon e_start="39166" e_stop="39273"/>
          <exon e_start="39915" e_stop="39957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAGTTATCTTCGCCAAGGTGAGCTGGG-AAGGTCTTTAAAGAA-GTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAGGTACTGATTATTGACTTGCTCAATCTTCAAATTTTTGGTTGCTCTCAACTATGTGGTTCTACTTTGTATTATTAGTGAACTTTCTGTTAAAGTGGAAACAATAGAAGGACTGGAACTCTTCTGCTTATAGTATCCTAGCTTTCTGGTTTTGATTACATGCAACTTGCAAGCTTACTGAGAATTACTTTGCTGAAACTCTTTATGTTTTTATGCTTTGTTTTGCCTCTATATTAGATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAAGTACTCAAATTTGCTACTTTTTGTTCTTTGAAAATTTCAACTTAGTAATAGGTGCCTTAATCTTTTGAATTATGTTTAGGATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAGGTATTCCCTTTTCTGCCATCTGTTGCATCTTTTAGGTATAAAACATCCATCAATTCATTGCAGAATTTTTTTTGATATTGCATTCTTTGCACAATTCTAGTATGAATTCAGAGTAGTCAGGAGTAACTGTTAGGTTTTTATTATATTTTGATGAAGACTATTCCATTATCTTCTAATGGAGTTAATGATGATGGGTATGTTGTTGCACTTTGGGTTTAAATTTGTATGGAATATGAAGTATCCATGCAAAGATGTTTTGAAGATAAAAGTAGCTCAATACAGAAGATTAAGATGAATTGTATTTTGTAATGTCATTTTTGGTGTAAAGAAAAACAAATGTAGATGAAGTAGCATCAATCATAGAATCCCTGTGAGCTCAACAGGCGATATTTTTGCTTTTTGTGATCTGTTAATATGGATTCCGGCACTTCCTTTGTGCTGATGTTTTAATATACTGTTACCTTCTGTAATTTTTTTGAGTGATCAAACATCTGTTACTTGGGATATCGTGTCAAACACTCAGAATGCTTGATGAAAATCCAAACATCTCCAGTAAAATGGGAAGAACAGTGTTTTAATAATTTCTACCACTTGGTATTTTCTGATTTTGACGAGTTCACTCTTGTTACTAAACCTTTCAGACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTC</genome_strand>
        <mrna_strand>GGGAAAAGTTATCTTCGCCAAGGTGAGCTGGGAAAGGTCCTTAAAGAAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGCGGGCCTACGTGGAAATGTTGAAGTTTCAAGATCGGCTTCATTCACATGCGTATTTTCGCAAAGCAGCTAGTGGTGCTATCAG..........................................................................................................................................................................................................................................ATGCTATCTGAAGCTGTACGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAGGCAGAAGCACGAGCTAAGAAA...............................................................................GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGATCCTCNTGCAGAAGCTTCAAAGTACCTCAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284022" ref_strand="+" ref_description="SGN-E284022 [cLER-13-E7]">
      <seq>ttcaagaccggcttcattcacatgcatattttcgcaaagcagctagtggtgctatcagatgctatctgaagctgtatgattctcctttgaagtcagcatctgaagaggatgatgcaatgtccaagttgcctccttctcagaaaaagaaattaaagcaaaaactgaggaaagcagaagcacgagctaagaaagatgcagaagtcaaaattgaggaatccaatgcaactagtgctactaaatctggaaagcgccatgtgaagcctgtagatcctgatccacatggtgaaaaattgattcagactgaagatcctctggcagaagcctcaaagtacctcaagcttctccttaagcactcaccagatttcttggagacacatttgctgtcctttgacgtaaacatgaggaagcagaagatcttgcttgccttgcaggcaataaagcatttaatgcggctggatgcagatgatccaaaatcacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38362" stop="41329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38662" g_stop="38719" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38954" g_stop="39086" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="191" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39166" g_stop="39273" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="299" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39915" g_stop="40046" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="431" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40773" g_stop="40829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="488" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40950" g_stop="41029" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="568" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E284022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38662" e_stop="38719"/>
          <exon e_start="38954" e_stop="39086"/>
          <exon e_start="39166" e_stop="39273"/>
          <exon e_start="39915" e_stop="40046"/>
          <exon e_start="40773" e_stop="40829"/>
          <exon e_start="40950" e_stop="41029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAGGTACTGATTATTGACTTGCTCAATCTTCAAATTTTTGGTTGCTCTCAACTATGTGGTTCTACTTTGTATTATTAGTGAACTTTCTGTTAAAGTGGAAACAATAGAAGGACTGGAACTCTTCTGCTTATAGTATCCTAGCTTTCTGGTTTTGATTACATGCAACTTGCAAGCTTACTGAGAATTACTTTGCTGAAACTCTTTATGTTTTTATGCTTTGTTTTGCCTCTATATTAGATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAAGTACTCAAATTTGCTACTTTTTGTTCTTTGAAAATTTCAACTTAGTAATAGGTGCCTTAATCTTTTGAATTATGTTTAGGATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAGGTATTCCCTTTTCTGCCATCTGTTGCATCTTTTAGGTATAAAACATCCATCAATTCATTGCAGAATTTTTTTTGATATTGCATTCTTTGCACAATTCTAGTATGAATTCAGAGTAGTCAGGAGTAACTGTTAGGTTTTTATTATATTTTGATGAAGACTATTCCATTATCTTCTAATGGAGTTAATGATGATGGGTATGTTGTTGCACTTTGGGTTTAAATTTGTATGGAATATGAAGTATCCATGCAAAGATGTTTTGAAGATAAAAGTAGCTCAATACAGAAGATTAAGATGAATTGTATTTTGTAATGTCATTTTTGGTGTAAAGAAAAACAAATGTAGATGAAGTAGCATCAATCATAGAATCCCTGTGAGCTCAACAGGCGATATTTTTGCTTTTTGTGATCTGTTAATATGGATTCCGGCACTTCCTTTGTGCTGATGTTTTAATATACTGTTACCTTCTGTAATTTTTTTGAGTGATCAAACATCTGTTACTTGGGATATCGTGTCAAACACTCAGAATGCTTGATGAAAATCCAAACATCTCCAGTAAAATGGGAAGAACAGTGTTTTAATAATTTCTACCACTTGGTATTTTCTGATTTTGACGAGTTCACTCTTGTTACTAAACCTTTCAGACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAGGTAATATCCTTTATAATTCAATTGAGATTGAGAAAGTTATTCTTTCCTTAGAACAAGATCCTGTCAATCTTCTATTATATGTATATCGGTATTCTTTGTGGCATAGTAGTGGGCTAGTGGCCATGCATATAGTTAGCTGCTTGAGTATACCATGCTTCCTTGTCTTTCCCCCTTTGTTTAGTTCCCCATTGCTAGTTGTATCTGGATTCGGGAATTGTAATCTTCATTTTCTGCTGTGGTTTTGAAAAAAAGAAAGAGAGATGTCACCTAAAATAGTTGGGCTCATGTTTTACATCCTTAAAAGCACTGCCATCAAAGTTGTTATAAAGGATGAGGTTGACCTCTCATCATATGGAGGATAGTTTTCTCAAAAGACCTGCATAGAACATTATGAAAGCATGGAAGCAAATTGATTTTATAGGAGAGACCAAGGACTAAGGCTAGTCAATTGGTACCTTTGTTCCAGGTCTGGTGGTTGATATGAGCTTTTTTTAGTTTGGATAGGGATTTTATGCCAGTGCCAGGATAATTATGATGTTTAACAGTATTCGCTTATTTCACAATTTTTTGTGTTAGAATCAAACGGCGGGCCTCTAGATGTAACGTGATGGTTATTGAAGCTTTGTTTGGTTGACCTGCATCTATTTTGAGCTTGAGATGTAGTCATAGTAGTAGTTGTTTTAGGAATATTGACAAACAATCACTTCGATCTTTTTATTTTTCCAGGCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGC</genome_strand>
        <mrna_strand>TTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAG..........................................................................................................................................................................................................................................ATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAA...............................................................................GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAAGCATTTAATGCGGCTGGATGCAGATGATCCAAAATCACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460395" ref_strand="+" ref_description="SGN-E460395 [cPRO-30-N14]">
      <seq>aagaggatgatgtaatgtccaagttgcctccttctcagaaaaagaaattaaagcaaaaactgaggaaggcagaagcacgagctaagaaagatgcagaagtcaaaattgaggaatccaatgcaactagtgctactaaatctggaaagcgccatgtgaagcctgtagatcctgatccacatggtgaaaaattgattcagactgaagatcctctggcagaagcttcaaagtacctcaagcttctccttaagcactcaccagatttcttagagacatatttgctgtcctttgacgtaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38698" stop="40316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38998" g_stop="39086" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39166" g_stop="39273" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="197" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39915" g_stop="40016" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="299" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E460395" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38998" e_stop="39086"/>
          <exon e_start="39166" e_stop="39273"/>
          <exon e_start="39915" e_stop="40016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAAGTACTCAAATTTGCTACTTTTTGTTCTTTGAAAATTTCAACTTAGTAATAGGTGCCTTAATCTTTTGAATTATGTTTAGGATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAGGTATTCCCTTTTCTGCCATCTGTTGCATCTTTTAGGTATAAAACATCCATCAATTCATTGCAGAATTTTTTTTGATATTGCATTCTTTGCACAATTCTAGTATGAATTCAGAGTAGTCAGGAGTAACTGTTAGGTTTTTATTATATTTTGATGAAGACTATTCCATTATCTTCTAATGGAGTTAATGATGATGGGTATGTTGTTGCACTTTGGGTTTAAATTTGTATGGAATATGAAGTATCCATGCAAAGATGTTTTGAAGATAAAAGTAGCTCAATACAGAAGATTAAGATGAATTGTATTTTGTAATGTCATTTTTGGTGTAAAGAAAAACAAATGTAGATGAAGTAGCATCAATCATAGAATCCCTGTGAGCTCAACAGGCGATATTTTTGCTTTTTGTGATCTGTTAATATGGATTCCGGCACTTCCTTTGTGCTGATGTTTTAATATACTGTTACCTTCTGTAATTTTTTTGAGTGATCAAACATCTGTTACTTGGGATATCGTGTCAAACACTCAGAATGCTTGATGAAAATCCAAACATCTCCAGTAAAATGGGAAGAACAGTGTTTTAATAATTTCTACCACTTGGTATTTTCTGATTTTGACGAGTTCACTCTTGTTACTAAACCTTTCAGACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATG</genome_strand>
        <mrna_strand>AAGAGGATGATGTAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAGGCAGAAGCACGAGCTAAGAAA...............................................................................GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGATCCTCTGGCAGAAGCTTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTAGAGACATATTTGCTGTCCTTTGACGTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337806" ref_strand="+" ref_description="SGN-E337806 [cTOE-17-D16]">
      <seq>gaggatgtgaagcctgtagatcctgatccacatggtgaaaaattgattcagactgaagatcctctggcagaagcctcaaagtacctcaagcttctccttaagcactcaccagatttcttggagacacatttgctgtcctttgacgtaaacatgaggaagcagaagatcttgcttgccttgcaggcaataaagcatttaatgcggttggatgcagatgatccaaaatcacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagcagagcgacctgcctttagccagttgcatggtaaatctctcattgaggcaaacaacacttttcttgagaaacataaagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38927" stop="41764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39222" g_stop="39273" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39915" g_stop="40046" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="183" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40773" g_stop="40829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="240" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40950" g_stop="41047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="338" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41251" g_stop="41309" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="397" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41410" g_stop="41464" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="452" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E337806" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39222" e_stop="39273"/>
          <exon e_start="39915" e_stop="40046"/>
          <exon e_start="40773" e_stop="40829"/>
          <exon e_start="40950" e_stop="41047"/>
          <exon e_start="41251" e_stop="41309"/>
          <exon e_start="41410" e_stop="41464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAGGTATTCCCTTTTCTGCCATCTGTTGCATCTTTTAGGTATAAAACATCCATCAATTCATTGCAGAATTTTTTTTGATATTGCATTCTTTGCACAATTCTAGTATGAATTCAGAGTAGTCAGGAGTAACTGTTAGGTTTTTATTATATTTTGATGAAGACTATTCCATTATCTTCTAATGGAGTTAATGATGATGGGTATGTTGTTGCACTTTGGGTTTAAATTTGTATGGAATATGAAGTATCCATGCAAAGATGTTTTGAAGATAAAAGTAGCTCAATACAGAAGATTAAGATGAATTGTATTTTGTAATGTCATTTTTGGTGTAAAGAAAAACAAATGTAGATGAAGTAGCATCAATCATAGAATCCCTGTGAGCTCAACAGGCGATATTTTTGCTTTTTGTGATCTGTTAATATGGATTCCGGCACTTCCTTTGTGCTGATGTTTTAATATACTGTTACCTTCTGTAATTTTTTTGAGTGATCAAACATCTGTTACTTGGGATATCGTGTCAAACACTCAGAATGCTTGATGAAAATCCAAACATCTCCAGTAAAATGGGAAGAACAGTGTTTTAATAATTTCTACCACTTGGTATTTTCTGATTTTGACGAGTTCACTCTTGTTACTAAACCTTTCAGACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAGGTAATATCCTTTATAATTCAATTGAGATTGAGAAAGTTATTCTTTCCTTAGAACAAGATCCTGTCAATCTTCTATTATATGTATATCGGTATTCTTTGTGGCATAGTAGTGGGCTAGTGGCCATGCATATAGTTAGCTGCTTGAGTATACCATGCTTCCTTGTCTTTCCCCCTTTGTTTAGTTCCCCATTGCTAGTTGTATCTGGATTCGGGAATTGTAATCTTCATTTTCTGCTGTGGTTTTGAAAAAAAGAAAGAGAGATGTCACCTAAAATAGTTGGGCTCATGTTTTACATCCTTAAAAGCACTGCCATCAAAGTTGTTATAAAGGATGAGGTTGACCTCTCATCATATGGAGGATAGTTTTCTCAAAAGACCTGCATAGAACATTATGAAAGCATGGAAGCAAATTGATTTTATAGGAGAGACCAAGGACTAAGGCTAGTCAATTGGTACCTTTGTTCCAGGTCTGGTGGTTGATATGAGCTTTTTTTAGTTTGGATAGGGATTTTATGCCAGTGCCAGGATAATTATGATGTTTAACAGTATTCGCTTATTTCACAATTTTTTGTGTTAGAATCAAACGGCGGGCCTCTAGATGTAACGTGATGGTTATTGAAGCTTTGTTTGGTTGACCTGCATCTATTTTGAGCTTGAGATGTAGTCATAGTAGTAGTTGTTTTAGGAATATTGACAAACAATCACTTCGATCTTTTTATTTTTCCAGGCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAGGTCATCTTGAATGCACTTCTCTTTTCTCTATATATCTTATGTTTAAATGCTATCAGTGTTGATACTCTACCAGTTATAGTACTTCCATTGATTTGGAATTTACAAAACCCCCAACTAGTTGGGATTGTCGATCTTATTATTGTATGATGTTATTGATTGTAATTATACTAAGGTTTCTGTATGTTTCTAATTGACCTTTCCAGCCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAA</genome_strand>
        <mrna_strand>GAG-GATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG...........................................................................................................................................................................................................CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246743" ref_strand="+" ref_description="SGN-E246743 [cLEF-45-N7]">
      <seq>tcgtgccgcagacttcttggagacacatttgctgtcctttgacgtaaacatgaggaagcagaagatcttgcttgccttgcaggcaataaagcatttaatgcggttggatgcagatgatccaaaatcacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagcagagcgacctgcctttagccagttgcatggtaaatctctcattgaggcaaacaacacttttcttgagaaacataaagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtactttgtccactcaacttactttggaggtattcaaagttcagctaacaatcaggtacagaaatcccctgcaaatggagctgtaggcctaaatgctggtgaaaattcttctctttcatcaaatggtagattagagaaactaaatgcgcttaaggatctacaaatttaattgtacacttcgagctgaagtgtaatctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39673" stop="42578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39965" g_stop="40046" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40773" g_stop="40829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="139" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40950" g_stop="41047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="237" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41251" g_stop="41309" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="296" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41410" g_stop="41521" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="408" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41637" g_stop="41737" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="509" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42055" g_stop="42278" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="733" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E246743" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39965" e_stop="40046"/>
          <exon e_start="40773" e_stop="40829"/>
          <exon e_start="40950" e_stop="41047"/>
          <exon e_start="41251" e_stop="41309"/>
          <exon e_start="41410" e_stop="41521"/>
          <exon e_start="41637" e_stop="41737"/>
          <exon e_start="42055" e_stop="42278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAGGTAATATCCTTTATAATTCAATTGAGATTGAGAAAGTTATTCTTTCCTTAGAACAAGATCCTGTCAATCTTCTATTATATGTATATCGGTATTCTTTGTGGCATAGTAGTGGGCTAGTGGCCATGCATATAGTTAGCTGCTTGAGTATACCATGCTTCCTTGTCTTTCCCCCTTTGTTTAGTTCCCCATTGCTAGTTGTATCTGGATTCGGGAATTGTAATCTTCATTTTCTGCTGTGGTTTTGAAAAAAAGAAAGAGAGATGTCACCTAAAATAGTTGGGCTCATGTTTTACATCCTTAAAAGCACTGCCATCAAAGTTGTTATAAAGGATGAGGTTGACCTCTCATCATATGGAGGATAGTTTTCTCAAAAGACCTGCATAGAACATTATGAAAGCATGGAAGCAAATTGATTTTATAGGAGAGACCAAGGACTAAGGCTAGTCAATTGGTACCTTTGTTCCAGGTCTGGTGGTTGATATGAGCTTTTTTTAGTTTGGATAGGGATTTTATGCCAGTGCCAGGATAATTATGATGTTTAACAGTATTCGCTTATTTCACAATTTTTTGTGTTAGAATCAAACGGCGGGCCTCTAGATGTAACGTGATGGTTATTGAAGCTTTGTTTGGTTGACCTGCATCTATTTTGAGCTTGAGATGTAGTCATAGTAGTAGTTGTTTTAGGAATATTGACAAACAATCACTTCGATCTTTTTATTTTTCCAGGCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAGGTCATCTTGAATGCACTTCTCTTTTCTCTATATATCTTATGTTTAAATGCTATCAGTGTTGATACTCTACCAGTTATAGTACTTCCATTGATTTGGAATTTACAAAACCCCCAACTAGTTGGGATTGTCGATCTTATTATTGTATGATGTTATTGATTGTAATTATACTAAGGTTTCTGTATGTTTCTAATTGACCTTTCCAGCCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTG</genome_strand>
        <mrna_strand>TCGTGCCGCAGACTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG...........................................................................................................................................................................................................CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312400" ref_strand="+" ref_description="SGN-E312400 [cTOA-5-J20]">
      <seq>gaagcagaagatcttgcttgccttgcaggcaataaaggatttaatgcggttggatgcagatgatccaaaatcacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagcagagcgacctgcctttagccagttgcatggtaaatctctcattgaggcaaacaacacttttcttgagaaacataaagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39719" stop="42383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40019" g_stop="40046" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40773" g_stop="40829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="85" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40950" g_stop="41047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="183" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41251" g_stop="41309" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="242" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41410" g_stop="41521" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="354" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41637" g_stop="41737" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="455" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42055" g_stop="42083" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="484" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E312400" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40019" e_stop="40046"/>
          <exon e_start="40773" e_stop="40829"/>
          <exon e_start="40950" e_stop="41047"/>
          <exon e_start="41251" e_stop="41309"/>
          <exon e_start="41410" e_stop="41521"/>
          <exon e_start="41637" e_stop="41737"/>
          <exon e_start="42055" e_stop="42083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGAAGATCTTGCTTGCCTTGCAGGTAATATCCTTTATAATTCAATTGAGATTGAGAAAGTTATTCTTTCCTTAGAACAAGATCCTGTCAATCTTCTATTATATGTATATCGGTATTCTTTGTGGCATAGTAGTGGGCTAGTGGCCATGCATATAGTTAGCTGCTTGAGTATACCATGCTTCCTTGTCTTTCCCCCTTTGTTTAGTTCCCCATTGCTAGTTGTATCTGGATTCGGGAATTGTAATCTTCATTTTCTGCTGTGGTTTTGAAAAAAAGAAAGAGAGATGTCACCTAAAATAGTTGGGCTCATGTTTTACATCCTTAAAAGCACTGCCATCAAAGTTGTTATAAAGGATGAGGTTGACCTCTCATCATATGGAGGATAGTTTTCTCAAAAGACCTGCATAGAACATTATGAAAGCATGGAAGCAAATTGATTTTATAGGAGAGACCAAGGACTAAGGCTAGTCAATTGGTACCTTTGTTCCAGGTCTGGTGGTTGATATGAGCTTTTTTTAGTTTGGATAGGGATTTTATGCCAGTGCCAGGATAATTATGATGTTTAACAGTATTCGCTTATTTCACAATTTTTTGTGTTAGAATCAAACGGCGGGCCTCTAGATGTAACGTGATGGTTATTGAAGCTTTGTTTGGTTGACCTGCATCTATTTTGAGCTTGAGATGTAGTCATAGTAGTAGTTGTTTTAGGAATATTGACAAACAATCACTTCGATCTTTTTATTTTTCCAGGCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAGGTCATCTTGAATGCACTTCTCTTTTCTCTATATATCTTATGTTTAAATGCTATCAGTGTTGATACTCTACCAGTTATAGTACTTCCATTGATTTGGAATTTACAAAACCCCCAACTAGTTGGGATTGTCGATCTTATTATTGTATGATGTTATTGATTGTAATTATACTAAGGTTTCTGTATGTTTCTAATTGACCTTTCCAGCCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTT</genome_strand>
        <mrna_strand>GAAGCAGAAGATCTTGCTTGCCTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAAAGGATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG...........................................................................................................................................................................................................CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291815" ref_strand="+" ref_description="SGN-E291815 [cLET-7-A10]">
      <seq>caaaatcacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagcagagcgacctgcctttagccagttgcatggtaaatctctcattgaggcaaacaacacttttcttgagaaacataaagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtactttgtccactcaacttactttggaggtattcaaagttcagctaacaatcaggtacagaaatcccctgcaaatggagctgtaggcctaaatgctggtgaaaattcttctctttcatcaaatggtagattagagaaactaaatgcgcttaaggatctacaaatttaattgtacacttcgagctgaagtgtaatctctctggaagagtgctggagaagccaagtggaactatatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40510" stop="42616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40810" g_stop="40829" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40950" g_stop="41047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="118" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41251" g_stop="41309" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="177" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41410" g_stop="41521" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="289" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41637" g_stop="41737" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="390" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42055" g_stop="42316" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="652" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E291815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40810" e_stop="40829"/>
          <exon e_start="40950" e_stop="41047"/>
          <exon e_start="41251" e_stop="41309"/>
          <exon e_start="41410" e_stop="41521"/>
          <exon e_start="41637" e_stop="41737"/>
          <exon e_start="42055" e_stop="42316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAGGTCATCTTGAATGCACTTCTCTTTTCTCTATATATCTTATGTTTAAATGCTATCAGTGTTGATACTCTACCAGTTATAGTACTTCCATTGATTTGGAATTTACAAAACCCCCAACTAGTTGGGATTGTCGATCTTATTATTGTATGATGTTATTGATTGTAATTATACTAAGGTTTCTGTATGTTTCTAATTGACCTTTCCAGCCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGC</genome_strand>
        <mrna_strand>CAAAATCACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG...........................................................................................................................................................................................................CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312405" ref_strand="+" ref_description="SGN-E312405 [cTOA-5-L20]">
      <seq>cacatctgtgcttgatgaagttcttccataaagttgactccttgcctactctagtaactgattctgaaaagctcatctggggtgtcttggaagcagagcgacctgcctttagccagttgcatggtaaatctctcattgaggcaaacaacacttttcttgagaaacataaagaatcattgatgcatagggctgctgcggctgaattgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40649" stop="41973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40816" g_stop="40829" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40950" g_stop="41047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="112" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41251" g_stop="41309" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="171" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41410" g_stop="41521" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="283" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41637" g_stop="41673" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="320" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E312405" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40816" e_stop="40829"/>
          <exon e_start="40950" e_stop="41047"/>
          <exon e_start="41251" e_stop="41309"/>
          <exon e_start="41410" e_stop="41521"/>
          <exon e_start="41637" e_stop="41673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTGTGCTTGGTATGCTTTTACGGCATCAATACTTCCAGTGATATTACTGTTTTATAAAACACGTCACGCTCTATTTCTCGAAGTACTCATATTTGCTTCTCTCTCATATGGACTATAATCTCTTTGCAGATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAGGTCATCTTGAATGCACTTCTCTTTTCTCTATATATCTTATGTTTAAATGCTATCAGTGTTGATACTCTACCAGTTATAGTACTTCCATTGATTTGGAATTTACAAAACCCCCAACTAGTTGGGATTGTCGATCTTATTATTGTATGATGTTATTGATTGTAATTATACTAAGGTTTCTGTATGTTTCTAATTGACCTTTCCAGCCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTG</genome_strand>
        <mrna_strand>CACATCTGTGCTTG........................................................................................................................ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG...........................................................................................................................................................................................................CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGCGGCTGAATTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307148" ref_strand="+" ref_description="SGN-E307148 [cLEY-15-O15]">
      <seq>tcattgaggcaaacaacacttttcttgagaaggataaagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtactttgtccactcaacttactttggaggtattcaaagttcagctaacaatcaggtacagaaatcccctgcaaatggagctgtaggcctaaatgctggtgaaaattcttctctttcatcaaatggtagattagagaaactaaatgcgcttaaggatctacaaatttaattgtacacttcgagctgaagtgtaatctctctggaagagtgctggagaagccaagtggaactatatcaagcttctagagtatacacttgacaacattaagatggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40971" stop="42653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41271" g_stop="41309" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41521" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="151" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41637" g_stop="41737" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42055" g_stop="42353" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="551" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E307148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41271" e_stop="41309"/>
          <exon e_start="41410" e_stop="41521"/>
          <exon e_start="41637" e_stop="41737"/>
          <exon e_start="42055" e_stop="42353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAGGTTAGCGTCTAACAGTAACATTCTTTTATTAGTTTATTTTGCATCGTTACTCCTCTCATTCTTGAAGAAAACATGATTTCCCATTGTGTGGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCT</genome_strand>
        <mrna_strand>TCATTGAGGCAAACAACACTTTTCTTGAGAAGGATAAAG....................................................................................................AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAAGATGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706231" ref_strand="+" ref_description="SGN-E706231 [FA29BE09]">
      <seq>ggtgtttgcagaatcattgatgcatagggctgctgtggctgagttgctacatgttctggaaccaaacaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggacggaggaaaaggaactgtcaggtcatggaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagtgagttctttaccattgcgcacatccttctgtcttttcatattgtacatctcaagtcttctcttggcctgaagttgagctgaagttaactgcattcatatgtttgactctggttctggtatattgctattgtagcctgttctttttttttttcatgcatccattccttttctgttgatttgggtggctgggggatatattattttgtctacgttatgtatgaaatgatccttttctgtcaaatacataagtgacaacgtacttacacgatatttgatgattctatgggtagtgatgtttttgaaacattgttgtaggatggaaagttcgttgtgctgagtactttgtccactcaacttactttggaggtattcaaagttcacctaacaatcaggtacaaaaatcccctgcaaatggagctgtaggcctaaatgctggtgaaaattcttctctttcatcaaatggtaaattagagaaactaaatgcgcttaaggatctacaaatttaattgtacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41099" stop="42555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41399" g_stop="41521" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="42255" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="742" r_length="619" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E706231" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41399" e_stop="41521"/>
          <exon e_start="41637" e_stop="42255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTT</genome_strand>
        <mrna_strand>GGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGGGGATATATTATTTTGTCTACGTTATGTATGAAATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAAACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCACCTAACAATCAGGTACAAAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAAATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590557" ref_strand="-" ref_description="SGN-E590557 [44155]">
      <seq>gttgctacatgttctggaaccagaccaagaaggctgaggctgtcaaattaattgaagactctgttaatgatcttgtttctatggagcggaggaccaaggaactgtcaggtcatggaaattgaacgactgcattacaggttcacaaactcctcgagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtactttgtgtactcgacttactttggaggtattcaaagttcagctaacaatcagatacagaaatctcctgcaaatggagctgtaggcctaaatgatggtgaaaattcttctctttcatcaaatgggagattggagaaactaaatgcgcttaaggatctacaaatttaattgtacacttcgagctgaagtgtaatctctctggaagagtgctggagaagctaagtggaactatatcgagcatctagagtatacacttgacaacattaggatggttctaaaggaaattttcagctctacaagggttcttattgcttctggactggttctccacccctgatttgatctggttattattgacatgaagatagtagtacacgcttgtcttgccaagggtcaggtcaaatactaggaaagagtttgtggcttggtgcgaagcattttcaacaactttcagatttgaagtttgagctcttggaagtctttttaagtagtcggatccttcattccgtcagcatagaaaaaggatgacttaaagtgcatgttgtatttttttcatttagttctccatttttcttaatgtacaaatgctgttttatgtgaaagaaattttgccatagtattcagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41141" stop="43005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41441" g_stop="41521" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41737" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="186" r_length="104" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.735" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42055" g_stop="42705" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="838" r_length="652" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E590557" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590557" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41441" e_stop="41521"/>
          <exon e_start="41637" e_stop="41737"/>
          <exon e_start="42055" e_stop="42705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTACATGTTCTGGAACCA-AACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTATGTAAGACCCTGTTTTCATCACGTTAATTTGTATTCTCATTACATAGCTGATAATATTTCGTTATATTTGCAAAATAGTAATAAATCGCCTCTGTTTTTACTTTTCTACAAATTAGGGA-CGGAGGA-AAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACA-GTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGG-AAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAA</genome_strand>
        <mrna_strand>GTTGCTACATGTTCTGGAACCAGACCAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT...................................................................................................................GGAGCGGAGGACCAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATTACAGGTTCACAAACTCCTCGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTTGTGTACTCGACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGATACAGAAATCTCCTGCAAATGGAGCTGTAGGCCTAAATGATGGTGAAAATTCTTCTCTTTCATCAAATGGGAGATTGGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCTAAGTGGAACTATATCGAGCATCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTACAAGGGTTCTTATTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGGTTATTATTGACATGAAGATAGTAGTACACGCTTGTCTTGCCAAGGGTCAGGTCAAATACTAGGAAAGAGTTTGTGGCTTGGTGCGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTTTTTAAGTAGTCGGATCCTTCATTCCGTCAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTAATGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTCAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231372" ref_strand="+" ref_description="SGN-E231372 [cLED-10-H1]">
      <seq>gaaattgaacgactgcatgacagttcacaaactcctggagacaactctggttgaccatgatgctgcatccagatggaaagttcgttgtgctgagtactttgtccactcaacttactttggaggtattcaaagttcaactaacaatcaggtacagaaatcccctgcaaatggagctgtaggcctaaatgctggtgaaaattcttctctttcatcaaatggtagattagagaaactaaatgcgcttaaggatctacaaatttaattgtacacttcgagctgaagtgtaatctctctggaagagtgctggagaagccaagtggaactatatcaagcttctagagtatacacttgacaacattaggatggttctaaaggaaattttcagctcttcgagggttcttgttgcttctggactggttctccacccctgatttgatctgattatcattgacacgaagatagtagtacactcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41367" stop="42758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41667" g_stop="41737" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42055" g_stop="42458" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="475" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E231372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41667" e_stop="41737"/>
          <exon e_start="42055" e_stop="42458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTG</genome_strand>
        <mrna_strand>GAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA.............................................................................................................................................................................................................................................................................................................................GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAACTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217693" ref_strand="+" ref_description="SGN-E217693 [cLEL-25-M19](-)">
      <seq>aaggatctacaaatttaattgtacacttcgactgaagtgtaatctctcggaagagtgctggagaagccaagtggaactatatcaagcttctagagtatacacttgncaacattaggatggttctaaaggaaattttcagctcttcgagggttcttgttgcttctggactggttctccacccctgatttgatctgattatcattgacacgaagatagtagtacactcctgtcttgccaagggtcaggtcaaatacaaggaagagtttgtggcttggcgtgaagcattttcaacaactttcagatttgaagtttgagctcttggaagtctgtttaagtagtcggatccttcattccgacagcatagaaaaaggatgacttaaagtgcatgttgtatttttttcatttagttctccatttttctttgtgtacaaatgctgttttatgtgaaagaaattttgccatagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41928" stop="42995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42228" g_stop="42712" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E217693" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42228" e_stop="42712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGATAA</genome_strand>
        <mrna_strand>AAGGATCTACAAATTTAATTGTACACTTCGA-CTGAAGTGTAATCTCTC-GGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGNCAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696221" ref_strand="+" ref_description="SGN-E696221 [LH_Ea08J03](-)">
      <seq>cctcgtgccgaattcggcacgaggctgaagtgtaatctctctggaagagtgctggagaagctaagtggaactatgtcgagcttctagagtatacacttgacgacattaggatggttttaaaggaaattttcagctcttcgagggttcttgttgcttctggactggttctccacccctgattcgatctgattatcattgacacgaagatagtagtacactcctgtcttgccaagggtcaggtcaaatacaaggaaatagtttgtggcttggcgcgaagcattttcaacaactttcagatttgaagtttgagctcttggaagtctgtttaagtagttggatccttcattccgccagcatagaaaaaggatgacttaaagtgcatgtgggatttttttcatttagttctccatttttcttaatgtaaaaaggctgttttatgtgaaagaaatttgccataaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41956" stop="93317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42260" g_stop="42710" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="475" r_length="451" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E696221" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42260" e_stop="42710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGG-AAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGAT</genome_strand>
        <mrna_strand>CTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCTAAGTGGAACTATGTCGAGCTTCTAGAGTATACACTTGACGACATTAGGATGGTTTTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTCGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAATAGTTTGTGGCTTGGCGCGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTTGGATCCTTCATTCCGCCAGCATAGAAAAAGGATGACTTAAAGTGCATGTGGGATTTTTTTCATTTAGTTCTCCATTTTTCTTAATGTAAAAAGGCTGTTTTATGTGAAAGAAA-TTTGCCATAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217744" ref_strand="+" ref_description="SGN-E217744 [cLEL-25-M7](-)">
      <seq>tgctggagaagccaagtggaactatacaagcttctagagtatacacttgacaacattaggatggttctaaaggaaattttcagctcttcgagggttcttgttgcttctggactggttctccacccctgatttgatctgattatcattgacacgaagatagtagtacactcctgtcttgccaagggtcaggtcaaatacaaggaagagtttgtggcttggcgtgaagcattttcaacaactttcagatttgaagtttgagctcttggaagtctgtttaagtagtcggatccttcattccgacagcatagaaaaaggatgacttaaagtgcatgttgtatttttttcatttagttctccatttttctttgtgtacaaatgctgttttatgtgaaagaaattttgccatagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41985" stop="42995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42285" g_stop="42712" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E217744" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42285" e_stop="42712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGATAA</genome_strand>
        <mrna_strand>TGCTGGAGAAGCCAAGTGGAACTATA-CAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337842" ref_strand="+" ref_description="SGN-E337842 [cTOE-14-G17]">
      <seq>taaatactatggcaaaatttctttcacataaaacagcatttgtacacaaagaaaaatggagaactaaatgaaaaaaatacaacatgcactttaagtcatcctttttctatgctgtcggaatgaaggatccgactacttaaacagacttccaagagctcaaacttcaaatctgaaagttgttgaaaatgcttcacgccaagccacaaactcttccttgtatttgacctgacccttggcaagacaggagtgtactactatcttcgtgtcaatgataatcagatcaaatcaggggtggagaaccagtccagaagcaacaagaaccctcgaagagctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42999" stop="42062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42699" g_stop="42363" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E337842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42699" e_stop="42363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACTATGGCAAAATTTCTTTCACATAAAACAGCATTTGTACACAAAGAAAAATGGAGAACTAAATGAAAAAAATACAACATGCACTTTAAGTCATCCTTTTTCTATGCTGTCGGAATGAAGGATCCGACTACTTAAACAGACTTCCAAGAGCTCAAACTTCAAATCTGAAAGTTGTTGAAAATGCTTCACGCCAAGCCACAAACTCTTCCTTGTATTTGACCTGACCCTTGGCAAGACAGGAGTGTACTACTATCTTCGTGTCAATGATAATCAGATCAAATCAGGGGTGGAGAACCAGTCCAGAAGCAACAAGAACCCTCGAAGAGCTGAAA</genome_strand>
        <mrna_strand>TAAATACTATGGCAAAATTTCTTTCACATAAAACAGCATTTGTACACAAAGAAAAATGGAGAACTAAATGAAAAAAATACAACATGCACTTTAAGTCATCCTTTTTCTATGCTGTCGGAATGAAGGATCCGACTACTTAAACAGACTTCCAAGAGCTCAAACTTCAAATCTGAAAGTTGTTGAAAATGCTTCACGCCAAGCCACAAACTCTTCCTTGTATTTGACCTGACCCTTGGCAAGACAGGAGTGTACTACTATCTTCGTGTCAATGATAATCAGATCAAATCAGGGGTGGAGAACCAGTCCAGAAGCAACAAGAACCCTCGAAGAGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747636" ref_strand="+" ref_description="SGN-E747636 [GI|3043912]">
      <seq>tgtgtgtgcttaccggaaaaagaacagttttaacggacgtgaagctgaatccaataataaaatgtacgtcaaagttagcatggatggagcaccgtttttgaggaaagttgatttgagtactcataagggttatgatcaacttgttatggctcttgaaaaactctttgattgctatggaattggagaagcattggaggatgcagataagtcagagttcgttccaatctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56000" stop="57012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56300" g_stop="56481" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56482" i_stop="56662" i_length="181">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56663" g_stop="56712" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="232" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E747636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56300" e_stop="56481"/>
          <exon e_start="56663" e_stop="56712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGTGCTTACCGGAAAAAGAACAGTTTTAACGGACGTGAAGCTGAATCCAATAATAAAATGTACGTCAAAGTTAGCATGGATGGAGCACCGTTTTTGAGGAAAGTTGATTTGAGTACTCATAAGGGTTATGATCAACTTGTTATGGCTCTTGAAAAACTCTTTGATTGCTATGGAATTGGTTAGTATTTCAGTTTTCTATATTAACATGCATTTATTTAGGCAAAGTGAAATTATTATTATTGAAATGTACGGTTACTGTACTATACTAATAAACATAAATCGAGCATCTTTTTCATAAATATAAGCAATTTAATTGCTAGTGTTATATATGTTAAATTTGTATTTAAATGTGTCAACAGGAGAAGCATTGGAGGATGCAGATAAGTCAGAGTTCGTTCCAATCTATGAA</genome_strand>
        <mrna_strand>TGTGTGTGCTTACCGGAAAAAGAACAGTTTTAACGGACGTGAAGCTGAATCCAATAATAAAATGTACGTCAAAGTTAGCATGGATGGAGCACCGTTTTTGAGGAAAGTTGATTTGAGTACTCATAAGGGTTATGATCAACTTGTTATGGCTCTTGAAAAACTCTTTGATTGCTATGGAATTG.....................................................................................................................................................................................GAGAAGCATTGGAGGATGCAGATAAGTCAGAGTTCGTTCCAATCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714899" ref_strand="+" ref_description="SGN-E714899 [FB12DA11]">
      <seq>agggttgatttgagtactcataagggttatgatcaacttgttatggctcttgaaaaactctttgattgctatggaattggagaagcattggaggatgcagataagtcagagttcgttccaatctatgaagacaaagatggagattggatgcttgtcggcgatgttccatggataatgttcagtgaatcatgcaaaaggctaaggatcatgaagagatcagaggcaaaagtgatagggcttggagcaagagactttctcaagggaatgtctcaagagaaatagagtggatgattcaagctatatttttacattaatatataattgtaattgtaatcttaggtgtgataagacaccctagacttaaaatcaatttctgatttgatttcctcttaattagcttaattattgtagtaatcagtaccttatttgctcttaaatgacaattttcgtatgtataataaggctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56106" stop="57981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56403" g_stop="56481" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56482" i_stop="56662" i_length="181">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56663" g_stop="56756" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56757" i_stop="57386" i_length="630">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57387" g_stop="57689" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="476" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E714899" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56403" e_stop="56481"/>
          <exon e_start="56663" e_stop="56756"/>
          <exon e_start="57387" e_stop="57689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGATTTGAGTACTCATAAGGGTTATGATCAACTTGTTATGGCTCTTGAAAAACTCTTTGATTGCTATGGAATTGGTTAGTATTTCAGTTTTCTATATTAACATGCATTTATTTAGGCAAAGTGAAATTATTATTATTGAAATGTACGGTTACTGTACTATACTAATAAACATAAATCGAGCATCTTTTTCATAAATATAAGCAATTTAATTGCTAGTGTTATATATGTTAAATTTGTATTTAAATGTGTCAACAGGAGAAGCATTGGAGGATGCAGATAAGTCAGAGTTCGTTCCAATCTATGAAGACAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCATGGATGTAAGTATTTCACTTTCTCTTTATGTTCTATTCGAGACGACAGATTCAGAATTTTTATTAATTTAGGAACATATTTAATATAATACTTGAGATTTGAATTTTGAAATTGTCGACTGAATTTTAAATTCAGTCGACCTCTAATCTTATGTTAAAAAAAGTTCAAATTTTATATATTAGTAATTTTTTAACGCGATCTGCCCCTCGGGCACCTTATCCCTAATTGAATCTTCTTTAATTAATTGTAAAACTAAACTAATTAATGTGTTAAAAGGGGTGTAAAATTTAGCTTATAGTACATAAATTGACCAATTTAGTCAAATTTAGGTGATTTAAACTAGCATATATTCACTGATGGATCAATTTTGTCCTTTTTAAGGCATAGATCAAAACATCATTATGCCGATAAATTAGAACATTGAAACCCGATTAAATAGGGATTCGTGCCAGGAAGGTTAAAACTTCCTAACAAAGGCAGCTTTATACCCAAGACAACTAAAATCTGAAACCTCTTGGTTAAGAATAAATTACTACCTACCACACTATAACAACCTTGATCGGTTACTCATCAAACATTTTGTAGTGTTAGAAAAAATCAAAAGAAGTCGTATTAATTGGAATTTGATTTAGCAGAATGTTCAGTGAATCATGCAAAAGGCTAAGGATCATGAAGAGATCAGAGGCAAAAGTGATAGGGCTTGGAGCAAGAGACTTTCTCAAGGGAATGTCTCAAGAGAAATAGAGTGGATGATTCAAGCTATATTTTTACATTAATATATAATTGTAATTGTAATCTTAGGTGTGATAAGACACCCTAGACTTAAAATCAATTTCTGATTTGATTTCCTCTTAATTAGCTTAATTATTGTAGTAATCAGTACCTTATTTGCTCTTAAATGACAATTTTCGTATGTATAATAAGGCTATATGTGTAAC</genome_strand>
        <mrna_strand>AGGGTTGATTTGAGTACTCATAAGGGTTATGATCAACTTGTTATGGCTCTTGAAAAACTCTTTGATTGCTATGGAATTG.....................................................................................................................................................................................GAGAAGCATTGGAGGATGCAGATAAGTCAGAGTTCGTTCCAATCTATGAAGACAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCATGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCAGTGAATCATGCAAAAGGCTAAGGATCATGAAGAGATCAGAGGCAAAAGTGATAGGGCTTGGAGCAAGAGACTTTCTCAAGGGAATGTCTCAAGAGAAATAGAGTGGATGATTCAAGCTATATTTTTACATTAATATATAATTGTAATTGTAATCTTAGGTGTGATAAGACACCCTAGACTTAAAATCAATTTCTGATTTGATTTCCTCTTAATTAGCTTAATTATTGTAGTAATCAGTACCTTATTTGCTCTTAAATGACAATTTTCGTATGTATAATAAGGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704688" ref_strand="+" ref_description="SGN-E704688 [FA24DH12]">
      <seq>agaatggctaacatgaaagcctccgtccacctacccgagagcatatatagtggcctaaccgcattttttcaaagcaccaaaagatatttcatttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63226" stop="65033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63526" g_stop="63899" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="556" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="668" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="730" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64733" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="769" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E704688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63526" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGGCTAACATGAAAGCCTCCGTCCACCTACCCGAGAGCATATATAGTGGCCTAACCGCATTTTTTCAAAGCACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAA</genome_strand>
        <mrna_strand>AGAATGGCTAACATGAAAGCCTCCGTCCACCTACCCGAGAGCATATATAGTGGCCTAACCGCATTTTTTCAAAGCACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722337" ref_strand="+" ref_description="SGN-E722337 [FC16DH06]">
      <seq>aatcggccgaattgaccaaaagatatttcatttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63301" stop="65151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63587" g_stop="63899" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="495" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="607" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="669" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64851" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="826" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E722337" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63587" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTCAAAGCACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTAC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745251" ref_strand="+" ref_description="SGN-E745251 [GI|47105827]">
      <seq>gaccaaaagatatttcatttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttattaatactgtatttgtatttttatttgtatgtttttgtcgttacgattgtagatctcaatatgaataaagccacttggggaaaaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63301" stop="65301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63600" g_stop="63899" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="482" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="594" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="656" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="65000" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="962" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="963" polyA_stop="977"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E745251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63600" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="65000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAA</genome_strand>
        <mrna_strand>GACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725181" ref_strand="+" ref_description="SGN-E725181 [FC26BC11]">
      <seq>ttggcggccaaatcggccgaattgaccaaaagatattccatttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63301" stop="65142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63600" g_stop="63899" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="323" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="505" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="617" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="679" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64842" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="827" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E725181" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63600" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTA</genome_strand>
        <mrna_strand>GACCAAAAGATATTCCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481435" ref_strand="+" ref_description="SGN-E481435 [cSTD-18-M19]">
      <seq>gagtgctcacttcaccaaactatctaaaagtgtaaaaaatgtcattggagagagtcaaattagcgaacggcttgacggaaaccgataattccggcctcaatttcaatgaaacagagctcacctctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctaggaagctcaacttcaggcgaacgccgccgtgaagaatgatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggctcaagtaattggatggccaccggtgagaatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtccgatagttaccagaagttgttaaatgctttagaaaacatgtttacctgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttacgaagataaagatggagactggatgcttgttggagatgttccatggaaaatgtttgttgatacgtgtaagaaattangttgatgaagagcacggaggctattggattagctccaagacaccgggnagatcggtcgagttcaagctaaattaatctaaagataactgcatgtacagatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63314" stop="65066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63608" g_stop="63899" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="468" r_length="183" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="580" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="641" r_length="61" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64766" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="712" r_length="71" r_score="0.792"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E481435" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63608" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCT-AACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAG-ATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATC-GTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACC</genome_strand>
        <mrna_strand>GAGTGCTCACTTCACCAAACTATCTAAAAGTGTAAAAAATGTCATTGGAGAGAGTCAAATTAGCGAACGGCTTGACGGAAACCGATAATTCCGGCCTCAATTTCAATGAAACAGAGCTCACCTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTAGGAAGCTCAACTTCAGGCGAACGCCGCCGTGA-A-----GAA--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCTCAAGTAATTGGATGGCCACCGGTGAGAATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTCCGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTTTACCTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTACGAAGATAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGA-AATTANGTTGATGAAGAGCACGGAGGCTATTGGATTAG.................................................................................CTCCAAG-ACACCGGGNAGATCGGTCGAGTTCAAGCTAAATTAA-TCTAAAGATAACTGCATGTACAGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705536" ref_strand="+" ref_description="SGN-E705536 [FA27BG01]">
      <seq>catttcatttcaccaaactatctaagaagggggaaaatgtcatcggagacagccaaatcatcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacggggaaattccgacggtatggaataaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatacaaaagtgcaaatacgtgaaggtagacaattgacggagctccttacttgagaaaagtatatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcagagtgaaagcaagcttatggaccttacaaatggtgtataatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaatctagataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagcttgcttatttctaccttttgcgttctttaattataggataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63311" stop="65129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63610" g_stop="63899" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="473" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="585" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="647" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64829" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="782" r_length="135" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E705536" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63610" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAG-CAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAG</genome_strand>
        <mrna_strand>CATTTCATTTCACCAAACTATCTAAGAAGGGGGAAAATGTCATCGGAGACAGCCAAATCATCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGGGGAAATTCCGACGGTATGGAATAAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATACAAAAGTGCAAATACGTGAAGGTAGACAATTGACGGAGCTCCTTACTTGAGAAAAGTATATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAGAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTATAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAATCTAGATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGCTTGCTTATTTCTACCTTTTGCGTTCTTTAATTATAGGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705446" ref_strand="+" ref_description="SGN-E705446 [FA27AG01]">
      <seq>atttcatttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63311" stop="65211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63611" g_stop="63899" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="471" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="583" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="645" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64911" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="862" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E705446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63611" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTA</genome_strand>
        <mrna_strand>ATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582049" ref_strand="+" ref_description="SGN-E582049 [7682]">
      <seq>tctcacttcacaaactatctaaaagggtaaaaaatgtcattggagagagccaaattatcgaacggcttgacggaaaccgataattccggcgctcaatttcaatgaaacagagctcactctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctaggaagctcaacttcaggcgaacgccgccgtgaagatgatcactcgaaaaacgaaatctctaccggaaacagaactccaggcaaaggctcaagtaattggatgtgcaccggtgagatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtacgatagttaccagaagttgttaaatgctttagaaaacatgtgtacctgtctaacaatctgtaattctcaaagtgaaagcaagcttatggagcttacaaatggtgtagaatatgtacctactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63343" stop="64623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63612" g_stop="63899" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="462" r_length="182" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64323" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="526" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E582049" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63612" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGC-CTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCA-GCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTA</genome_strand>
        <mrna_strand>TCTCACTTCAC-AAACTATCTAAAAGGGTAAAAAATGTCATTGGAGAGAGCCAAATTATCGAACGGCTTGACGGAAACCGATAATTCCGGCGCTCAATTTCAATGAAACAGAGCTCACTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTAGGAAGCTCAACTTCAGGCGAACGCCGCCGTGA-A-----G-A--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAGAACTCCAGGCAAA..........................................................................GGCTCAAGTAATTGGATGTGCACCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTACGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTGTACCTGTCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGAGCTTACAAATGGTGTAGAATATGTACCTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481127" ref_strand="+" ref_description="SGN-E481127 [cSTD-16-L19]">
      <seq>ctcacttcaccaaactatctaaaagggtaaaaaatgtcattggagagagccaaattagcgaacggcttgacggaaaccgataattccggcctcaatttcaatgaaacagagctcactctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctaggaagctcaacttcaggcgaacgccgccgtgaagatgatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggctcaagtaattggatggccaccggtgagatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtacgatagttaccagaagttgttaaatgctttagaaaacatgtttacctgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttacgaagataaagatggagactggatgcttgttggagatgttccatggaaaatgtttgttgatacgtgtaagagaattangttgatgaagagcacggangctattggattagctccaagacaccagggagatcgtcgagttaagctaaattatctaaagatactgcatgtacagataccaactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63314" stop="65073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63613" g_stop="63899" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="460" r_length="182" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="572" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="634" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64773" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="708" r_length="74" r_score="0.835"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E481127" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63613" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGC</genome_strand>
        <mrna_strand>CTCACTTCACCAAACTATCTAAAAGGGTAAAAAATGTCATTGGAGAGAGCCAAATTAGCGAACGGCTTGACGGAAACCGATAATTCCGGCCTCAATTTCAATGAAACAGAGCTCACTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTAGGAAGCTCAACTTCAGGCGAACGCCGCCGTGA-A-----G-A--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCTCAAGTAATTGGATGGCCACCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTACGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTTTACCTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTACGAAGATAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTANGTTGATGAAGAGCACGGANGCTATTGGATTAG.................................................................................CTCCAAG-ACACCAGGGAGATCGTCGAGTT-AAGCTAAATTATCTA--AAGAT-ACTGCATGTACAGATACCAACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428813" ref_strand="+" ref_description="SGN-E428813 [STM-50-P24]">
      <seq>ctcacttcaccaaactatctaaaagggtaaaaaatgtcattggagagagccaaattagcgaacggcttgacggaaaccgataattccggcctcaatttcaatgaaacagagctcactctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctaggaagctcaacttcaggcgaacgccgccgtgaagatgatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggctcaagtaattggatggccaccggtgagatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtacgatagttaccagaagttgttaaatgctttagaaaacatgtttacctgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttacgaagataaagatggagactggatgcttgttggagatgttccatggaaaatgtttgttgatacgtgtaagagaataggttgatgaagagcacggaggctattggattagctcccagaacacagggagatcgtcgagttcaagctaaattatctaagataactgcatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63314" stop="65036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63613" g_stop="63899" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="460" r_length="182" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="572" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="633" r_length="61" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64759" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="694" r_length="61" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E428813" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63613" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTAC</genome_strand>
        <mrna_strand>CTCACTTCACCAAACTATCTAAAAGGGTAAAAAATGTCATTGGAGAGAGCCAAATTAGCGAACGGCTTGACGGAAACCGATAATTCCGGCCTCAATTTCAATGAAACAGAGCTCACTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTAGGAAGCTCAACTTCAGGCGAACGCCGCCGTGA-A-----G-A--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCTCAAGTAATTGGATGGCCACCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTACGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTTTACCTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTACGAAGATAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAA-TAGGTTGATGAAGAGCACGGAGGCTATTGGATTAG.................................................................................CTCCCAGAACA-CAGGGAGATCGTCGAGTTCAAGCTAAATTATCTA---AGATAACTGCATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701593" ref_strand="+" ref_description="SGN-E701593 [FA16BF07]">
      <seq>atttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttccccgtgtgagtgaaaacgattgattttattaatactggatttggatttttatttgaatggttttggcgctacgaatgtaaatctcaataataataaagccccttggggaaaaaaaatcaaatccttttgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63316" stop="65311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63616" g_stop="63899" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="578" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="640" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="65008" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="955" r_length="315" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="958" polyA_stop="981"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E701593" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63616" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="65008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTT-CCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAAATCCTTTT</genome_strand>
        <mrna_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCCGTGTGAGTGAAAACGATTGATTTTATTAATACTGGATTTGGATTTTTATTTGAATGGTTTTGGCGCTACGAATGTAAATCTCAATAATAATAAAGCCCCTTGGGGAAAAAAAATCAAATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703932" ref_strand="+" ref_description="SGN-E703932 [FA22DE09]">
      <seq>atttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtaaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattangcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgaatgattttattaatactggatttgnattttaattgaatgtttttgccgttacgattgtagatctcaatatgaataaagccccttggggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63316" stop="65301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63616" g_stop="63899" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="578" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="640" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="65003" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="948" r_length="308" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E703932" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63616" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="65003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAAATC</genome_strand>
        <mrna_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTAAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTANGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGAATGATTTTATTAATACTGGATTTGNA-TTTTAATTGAATGTTTTTGCCGTTACGATTGTAGATCTCAATATGAATAAAGCCCCTTGGGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396204" ref_strand="+" ref_description="SGN-E396204 [TUS-24-N12]">
      <seq>atttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63316" stop="65011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63616" g_stop="63899" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="578" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="640" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64711" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="657" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E396204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63616" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGG</genome_strand>
        <mrna_strand>ATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553377" ref_strand="+" ref_description="SGN-E553377 [cTSB-5-J1]">
      <seq>tttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttattaatactgtatttgaatttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63317" stop="65232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63617" g_stop="63899" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="465" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="577" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="639" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64932" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="877" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E553377" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63617" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTAT</genome_strand>
        <mrna_strand>TTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGAATTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246776" ref_strand="+" ref_description="SGN-E246776 [cLEF-45-L18]">
      <seq>tttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63317" stop="64650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63617" g_stop="63899" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="465" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64350" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="556" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E246776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63617" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCT</genome_strand>
        <mrna_strand>TTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280941" ref_strand="+" ref_description="SGN-E280941 [cLER-7-C21]">
      <seq>ttcaccaaactatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63318" stop="64395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63618" g_stop="63899" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="404" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E280941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63618" e_stop="63899"/>
          <exon e_start="63974" e_stop="64095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGT</genome_strand>
        <mrna_strand>TTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554122" ref_strand="+" ref_description="SGN-E554122 [cTSC-3-E4]">
      <seq>actatctaaaaagggggaaaatgtcatcggagacagccaaatcagcgaacggtttgacggaaacaaataattccggccttaatttcaatgaaactgagctaactctcggcttacccggcgaatcgcggaagcaaatctccggtgcaaaacgtggaaattccgacggtatggaattaagcctaggaagctcaacttccggtgaacgccgccgtgatatctgcgaagttaatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaagtaagtcatgtagacacgtaattttttactctcccgaatttatgcacaattttaattgtgaattatgatattagggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttacctgaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaagtatactttaacgtttcatttttctttttgctcctttaatcaattccatcatataatatagatttcgtcgattttgtatgaaccgattgataaataattcaggtaattctcaaagtgaaagcaagcttatggaccttacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63326" stop="64601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63626" g_stop="64301" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E554122" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63626" e_stop="64301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGA-TTTGTATGAACCGATTGAT-AATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATG</genome_strand>
        <mrna_strand>ACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCTGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTTGTATGAACCGATTGATAAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582010" ref_strand="+" ref_description="SGN-E582010 [7643]">
      <seq>aaaatgtcattgggagagagccaaattagcgaacggcttgacggaaaccgataattccggcctcaatttcaatgaaacagagctcactctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctagaagctcaacttcaggcgaacgccgcgtgaagatgatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaatggctcgaagttaagttggatggccaccgggtgagatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtacgatagttaccagaagttgttaaatgctttagaaaacatgtttacctgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttacgaagataaagatggagactggatgcttgttggagatgttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63343" stop="64667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63643" g_stop="63899" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="434" r_length="187" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64367" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="542" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E582010" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63643" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTCA-TCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAG-GGCAC-AAG-TAA-TTGGATGGCCGCC-GGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCAT</genome_strand>
        <mrna_strand>AAAATGTCATTGGGAGAGAGCCAAATTAGCGAACGGCTTGACGGAAACCGATAATTCCGGCCTCAATTTCAATGAAACAGAGCTCACTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTA-GAAGCTCAACTTCAGGCGAACGCCG-CGTGA-A-----G-A--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................TGGCTCGAAGTTAAGTTGGATGGCCACCGGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTACGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTTTACCTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTACGAAGATAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487331" ref_strand="+" ref_description="SGN-E487331 [cSTE-25-O3]">
      <seq>cattggagagagccaaattagcgaacggcttgacggaaaccgataattccggcctcaatttcaatgaaacagagctcactctcggcttacccggagaatcgcggaagcaaatctccggtacaaaacgtggaatctccgacggtatggaattaatcctaggaagctcaacttcaggcgaacgccgccgtgaagatgatcactcgaaaaacgaaatctctaccggaaacaaacctccagcaaaggctcaagtaattggatggccaccggtgagatcatacagaaaaaacgtgatagaaaagtgcaagtacgtgaaggtggcagttgacggagctccttacttgagaaaagtagatctggaaatgtacgatagttaccagaagttgttaaatgctttagaaaacatgtttacctgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttacgaagataaagatggagactggatgcttgttggagatgttccatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63350" stop="64671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63650" g_stop="63899" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="423" r_length="182" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="535" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E487331" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63650" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA</genome_strand>
        <mrna_strand>CATTGGAGAGAGCCAAATTAGCGAACGGCTTGACGGAAACCGATAATTCCGGCCTCAATTTCAATGAAACAGAGCTCACTCTCGGCTTACCCGGAGAATCGCGGAAGCAAATCTCCGGTACAAAACGTGGAATCTCCGACGGTATGGAATTAATCCTAGGAAGCTCAACTTCAGGCGAACGCCGCCGTGA-A-----G-A--TGATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCTCAAGTAATTGGATGGCCACCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAGTACGTGAAGGTGGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAAATGTACGATAGTTACCAGAAGTTGTTAAATGCTTTAGAAAACATGTTTACCTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTACGAAGATAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398566" ref_strand="+" ref_description="SGN-E398566 [TUS-24-N12](-)">
      <seq>aaacgaaatctctaccggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttattaatactgtatttgtattttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63564" stop="65231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63864" g_stop="63899" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="218" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="330" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="392" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="64930" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="628" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="647"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E398566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63864" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTT</genome_strand>
        <mrna_strand>AAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716194" ref_strand="+" ref_description="SGN-E716194 [FB16BE07]">
      <seq>cggaaacaaacctccagcaaaggcacaagtaattggatggccgccggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttattaatactgtatttgtatttttatttgtatgtttttgtcgttacgattgtagatctcaatatgaataaagccacttggggaaaaanaanaaaaaaaaaaaaaanaaaaaancccctggggggggggccggaacccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63579" stop="65301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63879" g_stop="63899" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63974" g_stop="64155" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="203" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64260" g_stop="64371" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="315" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="377" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64695" g_stop="65000" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="683" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="701"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E716194" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63879" e_stop="63899"/>
          <exon e_start="63974" e_stop="64155"/>
          <exon e_start="64260" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="65000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAA</genome_strand>
        <mrna_strand>CGGAAACAAACCTCCAGCAAA..........................................................................GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAANAANAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747639" ref_strand="+" ref_description="SGN-E747639 [GI|3043906]">
      <seq>ggtgagatcatacagaaaaaacgtgatagaaaagtgcaaatacgtgaaggtagcagttgacggagctccttacttgagaaaagtagatctggagatgtacgacagttaccagaagttgttgaatgctttagaaaacatgtttacttgcctaacaatctgtaattctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63698" stop="64627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63998" g_stop="64155" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64260" g_stop="64327" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="226" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E747639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63998" e_stop="64155"/>
          <exon e_start="64260" e_stop="64327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAA</genome_strand>
        <mrna_strand>GGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT........................................................................................................GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229563" ref_strand="+" ref_description="SGN-E229563 [cLEL-4-D4](-)">
      <seq>tctcaaagtgaaagcaagcttatggaccttacaaatggtgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaagacgattgattttattaatactgtatttgtatttttatttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63965" stop="65237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64265" g_stop="64371" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="169" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64695" g_stop="64936" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="411" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="428"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E229563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64265" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGT</genome_strand>
        <mrna_strand>TCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234787" ref_strand="+" ref_description="SGN-E234787 [cLEL-6-C4](-)">
      <seq>caaatggtgtagaatatgtgccaacttatgaagataaagatggagactggatgcttgtagaagatgttccatggaaaatgtgtgttgatacgtgtaagacaattagattgatgaagagcgcgcaggctataggattagctccaagaacacctgggagatagtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgctacgatgcttcccgtgtgagtgaaggcggttgattttattaatactgtatttgtatttttacttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63996" stop="65237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64296" g_stop="64371" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="138" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64695" g_stop="64936" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="380" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E234787" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64296" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGT</genome_strand>
        <mrna_strand>CAAATGGTGTAGAATATGTGCCAACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGAAGATGTTCCATGGAA....................................................................................................................................................................................AATGTGTGTTGATACGTGTAAGACAATTAGATTGATGAAGAGCGCGCAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATAGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGGCGGTTGATTTTATTAATACTGTATTTGTATTTTTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229453" ref_strand="+" ref_description="SGN-E229453 [cLEL-4-D4](-)">
      <seq>tgtagaatatgtacctacttatgaagataaagatggagactggatgcttgtaggagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaagcttaataactgcatgtacagataccacctggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatatacttaggcaattgcttagaagtgtattttgtgctgcgatgcttcccgtgtgagtgaaggcgattgattttattaatactgtatttgtatttttatttgtaaaaaaaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="64003" stop="65237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64303" g_stop="64371" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="131" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64695" g_stop="64936" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="373" r_length="242" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="390"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E229453" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64303" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGT</genome_strand>
        <mrna_strand>TGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCACCTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATACTTAGGCAATTGCTTAGAAGTGTATTTTGTGCTGCGATGCTTCCCGTGTGAGTGAAGGCGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234883" ref_strand="+" ref_description="SGN-E234883 [cLEL-6-C4](-)">
      <seq>taaagatggagactggatgcttgtagaagatgttccatggaaaatgtttgttgatacgtgtaagagaattagattgatgaagagcacggaggctataggattagctccaagaacacctgggagatcgtcgagttgaagctaaataaagaaccttaatagctgcatgtacagataccaactggcttgagtgaataagtttttttatttttaccttttgcgttctttaattataggataagtaatatataattaggcaattacttagaagtgtattttgtgcaacgatgcttcccgtgtgagtgaagacgattgattttatcaatactgtatttgtatttttataagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="64030" stop="93316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64330" g_stop="64371" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64552" g_stop="64613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="104" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64695" g_stop="64938" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="348" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64939" i_stop="66599" i_length="1661">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66600" g_stop="66614" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="363" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E234883" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64330" e_stop="64371"/>
          <exon e_start="64552" e_stop="64613"/>
          <exon e_start="64695" e_stop="64938"/>
          <exon e_start="66600" e_stop="66614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAAGTATGTTTTTCTCTTCTTATTTTAATTTTGTTCGTAATGATTTAGGGAATGAGATTACAAGGTGGAGAATCAAACTCTTTATTGACCAGATAGCAGTTTTGATAGTCAACTAACTCAGCTGCTAAGATGTTTTAATTTTAATTTCCTAATTTATATGATTTTTTATTTTTTGCTGTACAGAATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAGGTAATTAATCTAATTAACTTCTTTCTTATTACATTATAATTATTGTTAAATATTAACTTCTTTTGTTAATTGTTTGTGTAGCTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAAATCCTTTTGTACGATTTGTGAAAGGAGGGTGAAAATGATGAAGTTTAATTTACAAATCGTTATCCTAAGATAGTAGTTTGAATAATTTTGTGGTATGTATGTTCAAACTCAATTGACAATTATGACAATACAATATGGAAATGAATCAATTGATGATTATGAAAAAGACAACATGGAAATGGATCACATATTGAGAAACATCATATACTAATACATGATTTGCGTGATATTTTTTATCAACATTAGTTTGAAAAGCTTGGATCTTTTCTTTCAATTAAACTTCAAATATATATATTTTTTTTAACTAATTAATACTAAGGATAAGGTGAGTAAAATTAAATTGGAAAAAAACCCTATTGTCGTTAACTTGAGATGATAATTTGGGAAGGATATGGTAATTTTGGTTTCATTCTATTCCGTTTCTTCAATCAAGAAAAACTCACGTACAGGGCTAGTGCCATCACATAGCTGAGTCTTCCCTTTGTGCTTATCGTCCACTCCTTCAAGTCGAGTGCCTCTCTTTTTCCTAGTACGGCTAGGGGTCACATAGTTGATAATTATTGGACAATATTTTGTGAGCATCGGGTTGTGTTTTAATATAAATGGAGCGATAACATAAATAGGTAGCACTAACAATAAATTGTTTAGGTATAAAATTTACAAATAATAATTATAAGTTAATTGTGTTTTTGCCCATTAATGATTAGTAAATCGAACTCCTTTTTATCAGATTTGTCCACTAATGCTCTACAGAGATTTTAATATACATATTGTCTCGTTAAATTTTGGAAGTCACTCATTGCTCTACAAATTTTGTATATTTACAATTAATCTTATATTGTGCCACCAAAATTTTGAAACAAATTAAATAATATTGATTTCTTATATATTCAAAGGAAACTATTGGTGCAAATTAATGATACTTTAATTGAATTGAATTCTATCTAATGATTATAAGGGGTTCTGACAATATGTAATATAACTCAAGTATTATATGCTCAAATTAGTTGAGAGCAAAGCACATAAAGCTATGTGTTTTTTTAAAAAAATAAAGTTATAAAAGTGTGTCCTCTGACCTCTCTAACAACTTAAGTTTTTAGATGAGATAGTCACAAATTTCAACATCATATCAGAAAGAATAATCATATACAGCATTCAGAATATAATTTGACAAAAATATTATCAAAAGCTCATTTCCTTTTTATTCAAAACTACAATTGCAGTAAGTAAATGAATGAAGATGTGTTAGTTGGGTTGCATTTTTTTACTATATGGGCTTGCTATCTATTTGGGCTACTAGTTACAACATTGAAGGGAATAACTGGTGGGCTAAAATGGCCCATCCATACTCTCCTTTAAAAAATAGAAACAGTATCATGTATACTCTAATTCCAAGATCCTAGAGGTATACATATTGTACTTAATAGTTTCAAACAAAGAACTAGCAAATCAAAAATTTAATTCGTCAAATTTAAATTCTGAATTTTCTAGACCGCAAGTAAATAATCCTTTAGGGTCGTCAAGGTCATTGTCTTTCATGAAGTCCACCATCTAACTAGCAAATATCGATAAAGATATTCAAGATAACAATTTTTGAAGAGTAAAAAGAAAAAG</genome_strand>
        <mrna_strand>TAAAGATGGAGACTGGATGCTTGTAGAAGATGTTCCATGGAA....................................................................................................................................................................................AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG.................................................................................CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAACCTTAATAGCTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCAACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATCAATACTGTATTTGTATTTTTATAAGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556422" ref_strand="+" ref_description="SGN-E556422 [cTSD-3-G9]">
      <seq>cttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="66801" stop="68828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67101" g_stop="67328" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67329" i_stop="67995" i_length="667">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67996" g_stop="68110" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68111" i_stop="68184" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68185" g_stop="68534" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="693" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E556422" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67101" e_stop="67328"/>
          <exon e_start="67996" e_stop="68110"/>
          <exon e_start="68185" e_stop="68534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAACCTTCATCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTT-TTGTCTACTCTGTCCGCCTTAAAAAATAAAATCGCCAATTTCGTGTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTATTGAGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTGGTTGAAAACAAGTCTAAGAGCTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAAACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTAGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTATCTATTCATCCTTATAATTATTCTTATTGTTTTTGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</genome_strand>
        <mrna_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGA-TTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370831" ref_strand="-" ref_description="SGN-E370831 [TUS-27-F13](-)">
      <seq>gccgcacaattattacttctcttacaaatctttgactctttttcttcaaccaaaaaagaaaaaaaaaatattgttttctcttttcagtccaaactagatctgttatcgctctaaaaagagactgtaatgtcgaaagatttgcattcagatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagatgttgcgtatgaggtttgtcgttattcccttttgaaaagatcatcaattccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaactggaaagtactgagttttcattttcgcgatttttgacgccttacttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatattgtcgatgataaatatgctttaatgtgtgtacaacatgattatactcctaaagagactacgaaaatggatggtgcagtgcaaacggtttatcctaggaagaattggtcgtccatggttctttataactgtggacatccaaagaaccgagggctaacacctgaggtggtgaatgctgagtccggggcatttcttcatcgcttcatgtggttggaggatgaggagattggggaggttccatttgtgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69276" stop="70720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69575" g_stop="69692" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69829" g_stop="70420" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="710" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E370831" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370831" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69575" e_stop="69692"/>
          <exon e_start="69829" e_stop="70420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCACAATTATTACTTCTCTTACAAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGAACCGAGGGCTAACACCTGAGGTGGTGAATGCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAA</genome_strand>
        <mrna_strand>GCCGCACAATTATTACTTCTCTTACAAATCTTTGACTCTTTTTCTTCAACCAAAAAAGAAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG........................................................................................................................................AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGAACCGAGGGCTAACACCTGAGGTGGTGAATGCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320664" ref_strand="+" ref_description="SGN-E320664 [cTOB-27-O3]">
      <seq>aaatctttgactctttttcttcaaccaaaaaaggaaaaaaaaatattgttttctcttttcagtccaaactagatctgttatcgctctaaaaagagactgtaatgtcgaaagatttgcattcagatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagatgttgcgtatgaggtttgtcgttattcccttttgaaaagatcatcaattccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaactgganagtactgagttttcattttcgcgatttttgacgccttacttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatattgtcgatgataaatatgctttaatgtgtgtacaacatgattatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69300" stop="70518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69600" g_stop="69692" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69829" g_stop="70218" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="483" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E320664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69600" e_stop="69692"/>
          <exon e_start="69829" e_stop="70218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTC</genome_strand>
        <mrna_strand>AAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG........................................................................................................................................AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGANAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320652" ref_strand="+" ref_description="SGN-E320652 [cTOB-27-K3]">
      <seq>aaatctttgactctttttcttcaaccaaaaaaggaaaaaaaaatattggtttctcttttcagtccaaactagatctgttatcgctctaaaaagagactgtaatgtcgaaagatttgcattcagatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagatgttgcgtatgaggtttgtcgttattcccttttgaaaagatcatcaattccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaactggaaagtactgagttttcattttcgcgatttttgacgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69300" stop="70387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69600" g_stop="69692" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69829" g_stop="70087" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="352" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E320652" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69600" e_stop="69692"/>
          <exon e_start="69829" e_stop="70087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCC</genome_strand>
        <mrna_strand>AAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGGTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG........................................................................................................................................AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324792" ref_strand="+" ref_description="SGN-E324792 [cTOC-8-K8]">
      <seq>atctttgactctttttcttcaaccaaaaaaggaaaaaaaaatattgtgttctcttttcagtccaaactagatctgttatcgctctaaaaagagactgtaatgtcgaaagatttgcattcagatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagatgttgcgtatgaaggttggccgtattcccttttgaaaagaacattcatttcacctggaaatacacacccattacgcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaactggaaagtactgagttttcattttcgcgatttttgacgccttacttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatattgtcgatgataaatatgctttaatgtgtgtacaacatgattatactcctaaagagactacgaaaatggatggtgcagtgcaaacggtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69302" stop="70563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69602" g_stop="69692" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69829" g_stop="70263" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="528" r_length="437" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E324792" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69602" e_stop="69692"/>
          <exon e_start="69829" e_stop="70263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCA-TCAATTCCACTTGAGATA-ACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATC</genome_strand>
        <mrna_strand>ATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTGTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG........................................................................................................................................AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAAGGTTGGCCGTATTCCCTTTTGAAAAGAACATTCATTTCACCTGGAAATACACACCCATTACGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323902" ref_strand="+" ref_description="SGN-E323902 [cTOC-3-G13]">
      <seq>atctttgactctttttcttcaaccaaaaaaggaaaaaaaaatattgttttctcttttcagtccaaactagatctgttatcgctctaaaaagagactgtaatgtcgaaagatttgcattcagatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagatgttgcgtatgaggtttgtcgttattcccttttgaaaagatcatcaattccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaactggaaagtactgagttctcattttcgcgatttttgacgccttacttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatattgtcgatgataaatatgctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69302" stop="70495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69602" g_stop="69692" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69829" g_stop="70195" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="458" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E323902" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69602" e_stop="69692"/>
          <exon e_start="69829" e_stop="70195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAAT</genome_strand>
        <mrna_strand>ATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG........................................................................................................................................AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTCTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422462" ref_strand="+" ref_description="SGN-E422462 [STM-40-B3]">
      <seq>cgagggttttctcttttcagtccaaaccagatctgttatcgctctaaaaagagactataatgtcgtctgtggtgaaagatttgcattcaaatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagacgctgcgtatgaggtttgtcgttattcccttctgaaaagatcatcaatcccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaattggaaagtactgagttttcattttcgcgatttttgactccttatttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatatggttgatgataaatatgctttaatgtgtgtacaacatgattatactcctaaagagactacgaaaatggacggtgcagtgcaaacggtttatcctaggaagaattggtcgtccatggttctctataactgtggacatccaaagaaccaggggctaacacccgaggtggtgaattctgagtccggggcatttcttcatcgcttcatgtggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69347" stop="70683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69642" g_stop="69692" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69818" i_length="126">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69819" g_stop="70383" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="615" r_length="564" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E422462" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69642" e_stop="69692"/>
          <exon e_start="69819" e_stop="70383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGAACCGAGGGCTAACACCTGAGGTGGTGAATGCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGG</genome_strand>
        <mrna_strand>CGAGGGTTTTCTCTTTTCAGTCCAAACCAGATCTGTTATCGCTCTAAAAAG..............................................................................................................................AGACTATAATGTCGTCTG-TGGTGAAAGATTTGCATTCAAATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGACGCTGCGTATGAGGTTTGTCGTTATTCCCTTCTGAAAAGATCATCAATCCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAATTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACTCCTTATTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATGGTTGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGACGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTCTATAACTGTGGACATCCAAAGAACCAGGGGCTAACACCCGAGGTGGTGAATTCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448413" ref_strand="+" ref_description="SGN-E448413 [cSTS-2-L10]">
      <seq>cgagggttttctcttttcagtccaaaccagatctgttatcgctctaaaaagagactataatgtcgtctgtggtgaaagatttgcattcaaatgtagagaaatctgagacccctttgaagccattcaagattttcgtaggctatgatccacgagaagacgctgcgtatgaggtttgtcgttattcccttctgaaaagatcatcaatcccacttgagataacacccattaagcaatgtgagttgagggagcagggtctgtattggcgtgaaagagggaaattggaaagtactgagttttcattttcgcgatttttgactccttatttggcagattatgagggttgggctatgtttgttgattgtgatttcttgtacttaggggatattaaagaattgagggatatggttgatgataaatatgctttaatgtgtgtacaacatgattatactcctaaagagactacgaaaatggacggtgcagtgcaaacggtttatcctaggaagaattggtcgtccatggttctctataactgtggacatccaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="69347" stop="70614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69642" g_stop="69692" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69693" i_stop="69818" i_length="126">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69819" g_stop="70314" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="546" r_length="495" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E448413" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69642" e_stop="69692"/>
          <exon e_start="69819" e_stop="70314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAGGTATGTTTCAAGGTTTCAAAGTTTCTATTTCAAGTCATAATTATGCTCCAAGATTCGATTTTTGTTTACCCAAATGCGTTCTTTTTCAAGTTGTTTTTTCAGGGATTTGAGTTTTTCTTGATTTTGTGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGA</genome_strand>
        <mrna_strand>CGAGGGTTTTCTCTTTTCAGTCCAAACCAGATCTGTTATCGCTCTAAAAAG..............................................................................................................................AGACTATAATGTCGTCTG-TGGTGAAAGATTTGCATTCAAATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGACGCTGCGTATGAGGTTTGTCGTTATTCCCTTCTGAAAAGATCATCAATCCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAATTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACTCCTTATTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATGGTTGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGACGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTCTATAACTGTGGACATCCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422463" ref_strand="-" ref_description="SGN-E422463 [STM-40-B3]">
      <seq>agtccggggcatttcttcatcgcttcatgtggttggaggatgaggagattggggaggttccatttgtgtggaactttcttgtggggcataataaggttgttgaaggtgatccagctacatttcctaaggggattcactatacacttggtggaccctggtttgaggcttggaaagattgtgaatttggtgatttgtggttgaaagaattggaagagtccaagaaggcaaaggagaaggtggtttaagccaatgtagacaacattgtttaaatcgcagggtgtatgttaaggtaatcggctggtggttattgttgtaagtgtgttcagtgattagaaggttatgccattaatttaatcttccacattatttattttgtattttctcacttcaagattctttgtaattcaagccagtatttattctgtgttgctatatctgataagcagacttttaagtcatctagagttgtattataattgtaataaatgtctgttggtataaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70048" stop="71151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70348" g_stop="70852" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="526"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E422463" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422463" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70348" e_stop="70852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAACTTTCTTGTGGGGCATAATAAGGTTGTTGAAGGTGATCCAGCTACATTTCCTAAGGCGATTCACTATACACTTGGTGGACCCTGGTTTGAAGCTTGGAAAGATTGTGAATTTGGTGATTTGTGGTTGAAGGAATTGGAAGAGTCCAAGAAGGCAAAGGAGAAGGTGGTTTGAGCCAATGTAGACAACATTGTTTGAATCGCAGGGTGTATGTTAAGGTAATCAGCTGGTGGTTATTGTTGTAAGTGTGTTCAGTGACCAGAAGGTTATGCCATTTATTTAACCTTCCACATTATTTATTTTGTATTTTCTCACTTCGAGGTTCTTTGTAATTCAAGCCAGTATTTTATTCTGTGTTGCTATATCTGATAAGCAAACTTTTAAGTCATCTAGAGTTGTATTATTATTTTAATAGATGTCTGTTTGTATAGAAG</genome_strand>
        <mrna_strand>AGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAACTTTCTTGTGGGGCATAATAAGGTTGTTGAAGGTGATCCAGCTACATTTCCTAAGGGGATTCACTATACACTTGGTGGACCCTGGTTTGAGGCTTGGAAAGATTGTGAATTTGGTGATTTGTGGTTGAAAGAATTGGAAGAGTCCAAGAAGGCAAAGGAGAAGGTGGTTTAAGCCAATGTAGACAACATTGTTTAAATCGCAGGGTGTATGTTAAGGTAATCGGCTGGTGGTTATTGTTGTAAGTGTGTTCAGTGATTAGAAGGTTATGCCATTAATTTAATCTTCCACATTATTTATTTTGTATTTTCTCACTTCAAGATTCTTTGTAATTCAAGCCAGTA-TTTATTCTGTGTTGCTATATCTGATAAGCAGACTTTTAAGTCATCTAGAGTTGTATTATAATTGTAATAAATGTCTGTTGGTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224158" ref_strand="+" ref_description="SGN-E224158 [cLEL-19-M24](-)">
      <seq>tttgtattttctcacttcaaggttctttgtaattcaagccagtattttattctgtgttgctatatctaataagcaaacttttaagtcatctaaagttgtattattattttaataaatgtctgtttgtatagaaggtagtagattgtgtgatgatctacaactttattattgatatctgctctggatttgtaatttggtttcattaatgagaaacgatgaaggtttggttgctaaaaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70419" stop="71250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70719" g_stop="70947" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="233" polyA_stop="244"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E224158" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70719" e_stop="70947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATTTTCTCACTTCGAGGTTCTTTGTAATTCAAGCCAGTATTTTATTCTGTGTTGCTATATCTGATAAGCAAACTTTTAAGTCATCTAGAGTTGTATTATTATTTTAATAGATGTCTGTTTGTATAGAAGGTAGTAGATTGTGTGATGATCTACAACTTTATTATTGATATCTGCTCTGGATTTGTAATTTGGTTTCATTAATGAGAAACGATGGAGGTTTGGTT</genome_strand>
        <mrna_strand>TTTGTATTTTCTCACTTCAAGGTTCTTTGTAATTCAAGCCAGTATTTTATTCTGTGTTGCTATATCTAATAAGCAAACTTTTAAGTCATCTAAAGTTGTATTATTATTTTAATAAATGTCTGTTTGTATAGAAGGTAGTAGATTGTGTGATGATCTACAACTTTATTATTGATATCTGCTCTGGATTTGTAATTTGGTTTCATTAATGAGAAACGATGAAGGTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712586" ref_strand="+" ref_description="SGN-E712586 [FB05BA10]">
      <seq>atcttgtcaagctatagagcaagagctctctctctctctgtctttagttgaagtattagagaagaagtagaaaaatggatgcaccacaatatcaagagatgtcttatgttgagcatgtcaaacgtcgacgcgaggaaaaaggatgcctttatgcttgtgtgttcgcaacgtgttgctgcttctgttgctatgagacctgcgagtgctgtctggacatgctctgctgctgtacttgatgtccatcctagacatgccaaccctgtgttactatgttagcaacatattacaaattccctgttttctcacactatgtctcttttgttaccttacctcccactctatgtttgaaaactgtgaagttgaataaacttgtgcttgcttttaagtcattttctattgaatttcaacgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73797" stop="75489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74097" g_stop="74253" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="75196" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="423" r_length="266" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E712586" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74097" e_stop="74253"/>
          <exon e_start="74931" e_stop="75196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTCAAGCTATAGAGCAAGAGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTGGTTTGTACTTCTTCACATCTATTTTTTTTTTTGTATTTACGAGTTTTAGATATCAACTGACATCCATGTCCTTCAATCTTGAGTGTGCACATACTTAAACATGTATAAGGTTGAACAATGAAATGCACTTATTGTATGTGACGCCAAGTAGGATGTTGATGATACGCTAAGTAGGATGTGTCCCTACTTATTTATGTATCTTCTAGTAATTTGTAAACTTGGAAGACATATATGCCAGAAGCTTAGTGAGATGACATGTTTATATATTTTGCTAGTTTTGTTACCTATCTTTTTTTACCTCAAAAGACATCTTTTGACCTTATTTTGATCACTAAAGGCATCTTCTGACCTTATTCTGCTCTGATCCTCCAAAATTGCAGGGGTTTGGTGGGGTGTTTTGTTTTAGTTTTGGATATGTTGTTTGTTCACCAGACTAAAACAGGCTAAGATTGATGGTGATCTTTTCTAGAAGCAAAAACATGTTTATGGGGTTCAAAACTTGGAAGCACAAGAAACCGACAAATTTGTGTTTTAGCTTAAAATTTTTATCAATGACCTACTTAAATGAGCTTGAATAGAGCAATATAAATTTGAGTCGTAGTGTTTTTCTTCTAGTTATATTTGACCTTAACACAATATGGATAGTAAGACAGATTTACTTGACTGAATGAATGCAGTGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTCATTTTCTATTGAATTTCAACGTACAACATTTTATG</genome_strand>
        <mrna_strand>ATCTTGTCAAGCTATAGAGCAAGAGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTCATTTTCTATTGAATTTCAACGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256869" ref_strand="+" ref_description="SGN-E256869 [cLEG-40-B18]">
      <seq>agctctctctctctctgtctttagttgaagtattagagaagaagtagaaaaatggatgcaccacaatatcaagagatgtcttatgttgagcatgtcaaacgtcgacgcgaggaaaaaggatgcctttatgcttgtgtgttcgcaacgtgttgctgcttctgttgctatgagacctgcgagtgctgtctggacatgctctgctgctgtacttgatgtccatcctagacatgccaaccctgtgttactatgttagcaacatattacaaattccctgttttctcacactatgtctcttttgttaccttacctcccactctatgtttgaaaactgtgaagttgaataaacttgtgcttgcttttaaaaaaaaaaaaaaaaaaaactcgagactagttctctcccgcccagatcccttttgccctcctctccgaatcagccgcccggatcctttttgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73820" stop="117594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74120" g_stop="74253" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="75158" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="362" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75159" i_stop="75891" i_length="733">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75892" g_stop="75943" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="410" r_length="48" r_score="0.615"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75944" i_stop="76184" i_length="241">
            <donor d_prob="0.346" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76185" g_stop="76229" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="456" r_length="46" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E256869" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74120" e_stop="74253"/>
          <exon e_start="74931" e_stop="75158"/>
          <exon e_start="75892" e_stop="75943"/>
          <exon e_start="76185" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTGGTTTGTACTTCTTCACATCTATTTTTTTTTTTGTATTTACGAGTTTTAGATATCAACTGACATCCATGTCCTTCAATCTTGAGTGTGCACATACTTAAACATGTATAAGGTTGAACAATGAAATGCACTTATTGTATGTGACGCCAAGTAGGATGTTGATGATACGCTAAGTAGGATGTGTCCCTACTTATTTATGTATCTTCTAGTAATTTGTAAACTTGGAAGACATATATGCCAGAAGCTTAGTGAGATGACATGTTTATATATTTTGCTAGTTTTGTTACCTATCTTTTTTTACCTCAAAAGACATCTTTTGACCTTATTTTGATCACTAAAGGCATCTTCTGACCTTATTCTGCTCTGATCCTCCAAAATTGCAGGGGTTTGGTGGGGTGTTTTGTTTTAGTTTTGGATATGTTGTTTGTTCACCAGACTAAAACAGGCTAAGATTGATGGTGATCTTTTCTAGAAGCAAAAACATGTTTATGGGGTTCAAAACTTGGAAGCACAAGAAACCGACAAATTTGTGTTTTAGCTTAAAATTTTTATCAATGACCTACTTAAATGAGCTTGAATAGAGCAATATAAATTTGAGTCGTAGTGTTTTTCTTCTAGTTATATTTGACCTTAACACAATATGGATAGTAAGACAGATTTACTTGACTGAATGAATGCAGTGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTCATTTTCTATTGAATTTCAACGTACAACATTTTATGGTATCTGTTTGTTTGGTGTGAGTATAAGAATTCTCCATTTTGATGAAACATGGACTATGACATACCAAACACACTAGAGTTGTTAAATCTAGATAATGCCTAGAGCAAAGAAGTTACAAATACAGTTCCCTTTGGCATATTTGCATCAAATACAATTACCAGAGAAGGTTTATGCGCAAAGGATAGGCTTAATAAACACCAAATCAAAAGAAAGACACTCGAAGAACAACAAAATAATTGATTTGATTGCCTTCACATTGGCTTAATTTACAGTATGAAACTTTAAAATACAACTGAAGATACACTCAGGTGGAAAGAATGCTTGTGAGTGTCAAATCTTTGCACAAAAATCAATCAAGGATAACTCGAGCAAAATTTTGTTCAAACATTTTACCATCACATGTGACTTAATTTACAAATGTATATTTGAATGTACAATTGAAGAGATTCTTAGAAGGAAATGATGCTTGCAAAGATTATTGTGATCTTTGCATAATAATCTATCAAGGATCAAAAGTAACTTCATTACTGCAGATTTACCTTAGCAACCGAGGATGGGATTTCTCCCTTCGTCAATATCAATGAGAAGAACATGCTTTGGATCTGAGCCAGAAGGTCCTTCTGAGTACAGTGTGGGAAGGTAAGCCTTGTATGCTGGCAAGTAGCGGGATACAAAGTCCTTCACCTGTGAAAAGTGGAACAAAATAAAAAAATTGGAGAACATTTCTCTGAAGCATCAACTGATGGGTTTTCATTTCTTTTTTGAGAAAGAATACACAAAGTGTTACCTCCTCATCAGACATTCCAGGCTTCCCATCAGCTCTCATTGCGATCTCCGCCTGGAAACATCCCACTACACTGGTTAAACAAATAGCACAAGAATAAATGTGGAGGAAAATGCAGATGAAATCACATAACAAACCTGCAAACGCCATTGGTAGACATAACTAGGATCTTGAATTTTGATGACAATCCATGATTTGACATACTTATGCCATGC-ATCATAATAAGCTTCTAAGTTCTTGTTGATCGT</genome_strand>
        <mrna_strand>AGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCGC--C--CAGATCC.................................................................................................................................................................................................................................................CTTTTGCCCTCCTCTCCGAATCAGCCGCCCGGATCCTTTTTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227712" ref_strand="+" ref_description="SGN-E227712 [cLEL-30-N2](-)">
      <seq>tctctctctctgtctttagttgaagtattagagaagaagtagaaaaatggatgcacctcaatatcaagagatgtcttatgttgagcatgtcaaacgtcgacgccaggaaaaaggatgcccttatgcttgtgtgttcgcaacgtgttgctgcttctgttgctatgagacctgcgagtgctgtctggacatgctctgctgctgtacttgatgtccatcctaaacatgccaaccctgtgttactatgttagcaacatattacaaattccctgttttctcacactatgtctcttttgttaccttacctcccactctatgtttgaaaactgtgaagttgaataaacttgtgcttgcttttaagtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73825" stop="75462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74125" g_stop="74253" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="75161" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="360" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="377"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E227712" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74125" e_stop="74253"/>
          <exon e_start="74931" e_stop="75161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTGGTTTGTACTTCTTCACATCTATTTTTTTTTTTGTATTTACGAGTTTTAGATATCAACTGACATCCATGTCCTTCAATCTTGAGTGTGCACATACTTAAACATGTATAAGGTTGAACAATGAAATGCACTTATTGTATGTGACGCCAAGTAGGATGTTGATGATACGCTAAGTAGGATGTGTCCCTACTTATTTATGTATCTTCTAGTAATTTGTAAACTTGGAAGACATATATGCCAGAAGCTTAGTGAGATGACATGTTTATATATTTTGCTAGTTTTGTTACCTATCTTTTTTTACCTCAAAAGACATCTTTTGACCTTATTTTGATCACTAAAGGCATCTTCTGACCTTATTCTGCTCTGATCCTCCAAAATTGCAGGGGTTTGGTGGGGTGTTTTGTTTTAGTTTTGGATATGTTGTTTGTTCACCAGACTAAAACAGGCTAAGATTGATGGTGATCTTTTCTAGAAGCAAAAACATGTTTATGGGGTTCAAAACTTGGAAGCACAAGAAACCGACAAATTTGTGTTTTAGCTTAAAATTTTTATCAATGACCTACTTAAATGAGCTTGAATAGAGCAATATAAATTTGAGTCGTAGTGTTTTTCTTCTAGTTATATTTGACCTTAACACAATATGGATAGTAAGACAGATTTACTTGACTGAATGAATGCAGTGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTC</genome_strand>
        <mrna_strand>TCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCTCAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCCAGGAAAAAGGATGCCCTTATGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAAACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227210" ref_strand="+" ref_description="SGN-E227210 [cLEL-30-N2](-)">
      <seq>gtattagagaagaagtagaaaaatggatgcaccacaatatcaagagatgtcttatgttgagcatgtcaaacgtcgacgccaggaaaaaggatgcctttatgcttgtgtgttcgcaacgtgttgctgcatctgttgctatgagacctgcgagtgctgtctggacatgctctgctgctgtacttgatgtccatcctagacatgccaaccctgtgttactatgttagcaacatattacaaattccctgttttctcacactatgtctcttttgttaccttacctcccactctatgtttgaaaactgtgaagttgaataaacttgtgcttgcttttgagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73849" stop="75462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74149" g_stop="74253" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="75158" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="333" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="353"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E227210" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74149" e_stop="74253"/>
          <exon e_start="74931" e_stop="75158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTGGTTTGTACTTCTTCACATCTATTTTTTTTTTTGTATTTACGAGTTTTAGATATCAACTGACATCCATGTCCTTCAATCTTGAGTGTGCACATACTTAAACATGTATAAGGTTGAACAATGAAATGCACTTATTGTATGTGACGCCAAGTAGGATGTTGATGATACGCTAAGTAGGATGTGTCCCTACTTATTTATGTATCTTCTAGTAATTTGTAAACTTGGAAGACATATATGCCAGAAGCTTAGTGAGATGACATGTTTATATATTTTGCTAGTTTTGTTACCTATCTTTTTTTACCTCAAAAGACATCTTTTGACCTTATTTTGATCACTAAAGGCATCTTCTGACCTTATTCTGCTCTGATCCTCCAAAATTGCAGGGGTTTGGTGGGGTGTTTTGTTTTAGTTTTGGATATGTTGTTTGTTCACCAGACTAAAACAGGCTAAGATTGATGGTGATCTTTTCTAGAAGCAAAAACATGTTTATGGGGTTCAAAACTTGGAAGCACAAGAAACCGACAAATTTGTGTTTTAGCTTAAAATTTTTATCAATGACCTACTTAAATGAGCTTGAATAGAGCAATATAAATTTGAGTCGTAGTGTTTTTCTTCTAGTTATATTTGACCTTAACACAATATGGATAGTAAGACAGATTTACTTGACTGAATGAATGCAGTGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAA</genome_strand>
        <mrna_strand>GTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCCAGGAAAAAGGATGCCTTTATGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCGCAACGTGTTGCTGCATCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724608" ref_strand="+" ref_description="SGN-E724608 [FC24CE07]">
      <seq>atgtcttatgttgagcatgtcaaacgtcgacgcgaggaaaaaggatgcctttatgcttgtgtgttcgcaacgtgttgctgcttctgttgctatgaaacctgcgagtgctgtctggacttgctctgctgctgtacttgatgtccatcctagacatgccaaccctgtgttactatgttagcaacatattacaaattccctgttttctcacactatgtctcttttgttaccttacctcccactctatgtttgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73895" stop="75426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74195" g_stop="74253" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="75126" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="255" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E724608" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74195" e_stop="74253"/>
          <exon e_start="74931" e_stop="75126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTGGTTTGTACTTCTTCACATCTATTTTTTTTTTTGTATTTACGAGTTTTAGATATCAACTGACATCCATGTCCTTCAATCTTGAGTGTGCACATACTTAAACATGTATAAGGTTGAACAATGAAATGCACTTATTGTATGTGACGCCAAGTAGGATGTTGATGATACGCTAAGTAGGATGTGTCCCTACTTATTTATGTATCTTCTAGTAATTTGTAAACTTGGAAGACATATATGCCAGAAGCTTAGTGAGATGACATGTTTATATATTTTGCTAGTTTTGTTACCTATCTTTTTTTACCTCAAAAGACATCTTTTGACCTTATTTTGATCACTAAAGGCATCTTCTGACCTTATTCTGCTCTGATCCTCCAAAATTGCAGGGGTTTGGTGGGGTGTTTTGTTTTAGTTTTGGATATGTTGTTTGTTCACCAGACTAAAACAGGCTAAGATTGATGGTGATCTTTTCTAGAAGCAAAAACATGTTTATGGGGTTCAAAACTTGGAAGCACAAGAAACCGACAAATTTGTGTTTTAGCTTAAAATTTTTATCAATGACCTACTTAAATGAGCTTGAATAGAGCAATATAAATTTGAGTCGTAGTGTTTTTCTTCTAGTTATATTTGACCTTAACACAATATGGATAGTAAGACAGATTTACTTGACTGAATGAATGCAGTGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACT</genome_strand>
        <mrna_strand>ATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAAACCTGCGAGTGCTGTCTGGACTTGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317231" ref_strand="-" ref_description="SGN-E317231 [cTOA-28-K14]">
      <seq>gaaatgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaaagaaggtgtgaaggtgaagcttccaagatatgataaatctgcttacagtggtagaggtgacagagctgatccctccgaatggccagaggttgaaggacctctaccggntaattgtgtttgaaggatggatgcttggtttcaaaccccttccacctgaagttgtcaaagctgttgatccacagctagagacgatcaacaagaacttagaagcttattatgatgcatggcataagtatgtcaaatcatggattgtcatcaaaattcaagatcctagttatgtctaccaatggcgtttgcaggcggagatcgcaatgagagctgatgggaagcctggaatgtctgatgaggaggtgaaggactttgtatcccgctacttgccagcatacaaggcttaccttcccacactgtactcagaaggaccttctggctcagatccaaagcatgttcttctcattgatattgacgaagggagaaatcccatcctcggttgctaaggtaaatctgcagtaatgaagttacttttgatccttgatagattattatgcaaagatcacaataatctttgcaagcatcatttccttctaagaatctcttcaattgtacattcaaatatacatttgtaaattaagtcacatgtgatggtaaaatgtttgaacaaaattttgctcgagttatccttgattgatttttgtgcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77266" stop="75233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76966" g_stop="76895" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="104" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76706" g_stop="76638" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="173" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76392" g_stop="76318" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="249" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76235" g_stop="76119" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="366" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76118" i_stop="76036" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76035" g_stop="75985" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="417" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75984" i_stop="75882" i_length="103">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75881" g_stop="75531" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="768" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E317231" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76966" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76638"/>
          <exon e_start="76392" e_stop="76318"/>
          <exon e_start="76235" e_stop="76119"/>
          <exon e_start="76035" e_stop="75985"/>
          <exon e_start="75881" e_stop="75531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCGGTAGGAAGTTGTTTTTATTTAGACCTGGCAATTAGTGGATTTCAGTTCAGCTAATGATAATGATCAAAGAGTAATCCCAATGCCCTCATTTCTACAAAGTTAAAGTAAAAATTCTCAAATGACTTAAAATGTGAGAATGTCAGCATCATGGTCTCGTTCTGTAAAAACACAACTTTTCTCATAGATCCAAACTCAAAGCGATATGGTAAGATTGCCTCACGTATTGTCAGTGCTTTGGATATTAGG-TAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGGTTCAAATACTAGACTCTCTCTGGATGCTTGTGCTTTTTATTTTGATCTCATCTTGGATCACTGAACCTTTCGAAATTGCAGCTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAGGTTTGTTATGTGATTTCATCTGCATTTTCCTCCACATTTATTCTTGTGCTATTTGTTTAACCAGTGTAGTGGGATGTTTCCAGGCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAGGTAACACTTTGTGTATTCTTTCTCAAAAAAGAAATGAAAACCCATCAGTTGATGCTTCAGAGAAATGTTCTCCAATTTTTTTATTTTGTTCCACTTTTCACAGGTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAAATTTTGCTCGAGTTATCCTTGATTGATTTTTGTGCAAAGATT</genome_strand>
        <mrna_strand>GAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAA...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCG.....................................................................................................................................................................................................................................................GNTAATTGTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG..................................................................................CTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAG...................................................................................GCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAG.......................................................................................................GTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAAATTTTGCTCGAGTTATCCTTGATTGATTTTTGTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317234" ref_strand="-" ref_description="SGN-E317234 [cTOA-28-M10]">
      <seq>gcatggcataagtatgtcaaatcatggattgtcatcaaaattcaagatcgtagttatgtctaccaatggcgtttgcaggcggagatcgcaatgagagctgatgggaagcctggaatgtctgatgaggaggtgaaggactttgtatcccgttacttgccagcatacaaggcttaccttcccacactgtactcagaaggaccttctggctcagatccaaagcatgttcttctcattgatattgacgaagggagaaatcccatcctcggttgctaaggtaaatctgcagtaatgaagttacttttgatccttgatagattattatgcaaagatcacaataatctttgcaagcatcatttccttctaagaatctcttcaattgtacattcaaatatacatttgtaaattaagtcacatgtgatggtaaaatgtttgaacaaaattttgctcgagttatccttgattgatttttgtgcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76496" stop="75233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76196" g_stop="76119" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76118" i_stop="76036" i_length="83">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76035" g_stop="75985" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="129" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75984" i_stop="75882" i_length="103">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75881" g_stop="75531" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="480" r_length="351" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E317234" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317234" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76196" e_stop="76119"/>
          <exon e_start="76035" e_stop="75985"/>
          <exon e_start="75881" e_stop="75531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAGGTTTGTTATGTGATTTCATCTGCATTTTCCTCCACATTTATTCTTGTGCTATTTGTTTAACCAGTGTAGTGGGATGTTTCCAGGCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAGGTAACACTTTGTGTATTCTTTCTCAAAAAAGAAATGAAAACCCATCAGTTGATGCTTCAGAGAAATGTTCTCCAATTTTTTTATTTTGTTCCACTTTTCACAGGTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAAATTTTGCTCGAGTTATCCTTGATTGATTTTTGTGCAAAGATT</genome_strand>
        <mrna_strand>GCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCGTAGTTATGTCTACCAATGGCGTTTGCAG...................................................................................GCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAG.......................................................................................................GTGAAGGACTTTGTATCCCGTTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAAATTTTGCTCGAGTTATCCTTGATTGATTTTTGTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548539" ref_strand="+" ref_description="SGN-E548539 [TUS-62-C6](-)">
      <seq>aaaagaaggtgtgaaggtgaagcttccaagatatgataagtctgcttacagtggtagaggtgacagagctgatccctccgaatggccagaggttgaaggacctctaccggtaattctgtttgaaggatggatgcttggtttcaaaccccttccacctgaagttgtcaaagctgttgatccacagctagagacgatcaacaagaacttagaagctttttatgatgcatgtcataagtatgtcaaatcatggattgtcatcaaaattcaagatcctagttatgtctaccaatggcgtttgcaggcggagatcgcaatgagagctgatgggaagcctggaatgtctgatgaggaggtgaaggactttgtatcccgctacttgccagcatacaaggcttaccttcccacactgtactcagaaggaccttctggctcagatccaaagcatgttcttctcattgatattgacgaagggagaaatcccatcctcggttgttaaggtaaatctgcagtaatgaagttacttttgatccttgatagattattatgcaaagatcacaataatctttgcaagcatcatttccttctaagaatctcttcaattgtacattcaaatatacatttgtaaattaagtcacatgtgatggtaaaatgtttgaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77119" stop="75272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76902" g_stop="76895" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="40" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76706" g_stop="76638" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="109" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76392" g_stop="76318" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="184" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76235" g_stop="76119" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76118" i_stop="76036" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76035" g_stop="75985" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="352" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75984" i_stop="75882" i_length="103">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75881" g_stop="75573" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="661" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E548539" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76902" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76638"/>
          <exon e_start="76392" e_stop="76318"/>
          <exon e_start="76235" e_stop="76119"/>
          <exon e_start="76035" e_stop="75985"/>
          <exon e_start="75881" e_stop="75573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCGGTAGGAAGTTGTTTTTATTTAGACCTGGCAATTAGTGGATTTCAGTTCAGCTAATGATAATGATCAAAGAGTAATCCCAATGCCCTCATTTCTACAAAGTTAAAGTAAAAATTCTCAAATGACTTAAAATGTGAGAATGTCAGCATCATGGTCTCGTTCTGTAAAAACACAACTTTTCTCATAGATCCAAACTCAAAGCGATATGGTAAGATTGCCTCACGTATTGTCAGTGCTTTGGATATTAGGTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGGTTCAAATACTAGACTCTCTCTGGATGCTTGTGCTTTTTATTTTGATCTCATCTTGGATCACTGAACCTTTCGAAATTGCAGCTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAGGTTTGTTATGTGATTTCATCTGCATTTTCCTCCACATTTATTCTTGTGCTATTTGTTTAACCAGTGTAGTGGGATGTTTCCAGGCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAGGTAACACTTTGTGTATTCTTTCTCAAAAAAGAAATGAAAACCCATCAGTTGATGCTTCAGAGAAATGTTCTCCAATTTTTTTATTTTGTTCCACTTTTCACAGGTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAA</genome_strand>
        <mrna_strand>AAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAG...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCG.....................................................................................................................................................................................................................................................GTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG..................................................................................CTAGAGACGATCAACAAGAACTTAGAAGCTTTTTATGATGCATGTCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAG...................................................................................GCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAG.......................................................................................................GTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGTTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281247" ref_strand="-" ref_description="SGN-E281247 [cLEL-1-M11]">
      <seq>gactttgtatcccgctacttgccagcatacaaggcttaccttcccacactgtactcagaaggaccttctggctcagatccaaagcatgttcttctcattgatattgacgaagggagaaatcccatcctcggttgctaaggtaaatctgcagtaatgaagttacttttgatccttgatagattattatgcaaagatcacaataatctttgcaagcatcatttccttctaagaatctcttcaattgtacattcaaatatacagttgtaaattaagtcacatgtgatggtacaatgtttgaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76175" stop="75272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75875" g_stop="75573" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="304" polyA_stop="319"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E281247" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281247" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75875" e_stop="75573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAA</genome_strand>
        <mrna_strand>GACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACAGTTGTAAATTAAGTCACATGTGATGGTACAATGTTTGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698818" ref_strand="+" ref_description="SGN-E698818 [FA07CG06]">
      <seq>cgtttaagggcaagattggtctgacaccagaaaaggtggcccattccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaaagaaggtgtgaaggtgaagcttccaagatatgataaatctgcttacagtggtagaggtgacagagctgatccctccgaatggccagaggttgaaggacctctaccggtaattctgtttgaaggatggatgcttggtttcaaaccccttccacctgaagttgtcaaagctgttgatccacagctagagacgatcaacaagaacttagaagcttattatgatgcatggcataagtatgtcaaatcatggattgtcatcaaaattcaagatcctagttatgtctaccaatggcgtttgcaggcggagatcgcaatgagagctgatgggaagcctgaaatgtctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78027" stop="75689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77736" g_stop="77504" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="313" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="365" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="407" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76973" g_stop="76895" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="486" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="518" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76706" g_stop="76638" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="587" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76392" g_stop="76318" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="662" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76235" g_stop="76119" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="779" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="76118" i_stop="76036" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="76035" g_stop="75989" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="826" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E698818" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77736" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76638"/>
          <exon e_start="76392" e_stop="76318"/>
          <exon e_start="76235" e_stop="76119"/>
          <exon e_start="76035" e_stop="75989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCGGTAGGAAGTTGTTTTTATTTAGACCTGGCAATTAGTGGATTTCAGTTCAGCTAATGATAATGATCAAAGAGTAATCCCAATGCCCTCATTTCTACAAAGTTAAAGTAAAAATTCTCAAATGACTTAAAATGTGAGAATGTCAGCATCATGGTCTCGTTCTGTAAAAACACAACTTTTCTCATAGATCCAAACTCAAAGCGATATGGTAAGATTGCCTCACGTATTGTCAGTGCTTTGGATATTAGGTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGGTTCAAATACTAGACTCTCTCTGGATGCTTGTGCTTTTTATTTTGATCTCATCTTGGATCACTGAACCTTTCGAAATTGCAGCTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAGGTTTGTTATGTGATTTCATCTGCATTTTCCTCCACATTTATTCTTGTGCTATTTGTTTAACCAGTGTAGTGGGATGTTTCCAGGCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGA</genome_strand>
        <mrna_strand>CGTTTAAGGGCAAGATTGGTCTGACACCAGAAAAGGTGGCCCATTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAA...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCG.....................................................................................................................................................................................................................................................GTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG..................................................................................CTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAG...................................................................................GCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGAAATGTCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728083" ref_strand="+" ref_description="SGN-E728083 [LA16CF04]">
      <seq>gatatatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaatagacagcaacccagggaacttgcttttggagtttcgtggaaacgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaaagaaggtgtgaaggtgaagcttccaagatatgataaatctgcttacagtggtagaggtgacagagctgatccctccgaatggccagaggttgaaggacctctaccggtaattctgtttgaaggatggatgcttggtttcaaaccccttccacctgaagttgtcaaagctgttgatccacagctagagacgatncacaagaacttagaagcttattatgatgcatggcataagtatgtcaaatcatggattgtcatcaaaaatcaagatcctagttatgtctaccaatggcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78166" stop="75823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77866" g_stop="77504" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="443" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="495" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="537" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76973" g_stop="76895" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="616" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="648" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76706" g_stop="76638" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="717" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76392" g_stop="76318" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="792" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76235" g_stop="76123" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="905" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E728083" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77866" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76638"/>
          <exon e_start="76392" e_stop="76318"/>
          <exon e_start="76235" e_stop="76123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCGGTAGGAAGTTGTTTTTATTTAGACCTGGCAATTAGTGGATTTCAGTTCAGCTAATGATAATGATCAAAGAGTAATCCCAATGCCCTCATTTCTACAAAGTTAAAGTAAAAATTCTCAAATGACTTAAAATGTGAGAATGTCAGCATCATGGTCTCGTTCTGTAAAAACACAACTTTTCTCATAGATCCAAACTCAAAGCGATATGGTAAGATTGCCTCACGTATTGTCAGTGCTTTGGATATTAGGTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGGTTCAAATACTAGACTCTCTCTGGATGCTTGTGCTTTTTATTTTGATCTCATCTTGGATCACTGAACCTTTCGAAATTGCAGCTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTT</genome_strand>
        <mrna_strand>GATATATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAATAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAACGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAA...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCG.....................................................................................................................................................................................................................................................GTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG..................................................................................CTAGAGACGATNCACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAAATCAAGATCCTAGTTATGTCTACCAATGGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727585" ref_strand="+" ref_description="SGN-E727585 [LA15AE11]">
      <seq>ccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaaagaaggtgtgaaggtgaagcttccaagatatgataaatctgcttacagtggtagaggtgacagagctgatccctccgaatggccagaggttgaaggacctctacccggtaattctgtttgaaggatggatgcttggtttcaaaccccttccacctgaagttgtcaaagctgttgatccacagctagagacgatcaancagaacttagaagcttattatgatgcatggcataagtatgtcaaatcatggattgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78159" stop="75861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77859" g_stop="77504" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="436" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="488" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="530" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76973" g_stop="76895" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="609" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="641" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76706" g_stop="76638" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="711" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245">
            <donor d_prob="0.870" d_score="0.96"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76392" g_stop="76318" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="786" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76235" g_stop="76161" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="861" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E727585" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77859" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76638"/>
          <exon e_start="76392" e_stop="76318"/>
          <exon e_start="76235" e_stop="76161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTA-CCGGTAGGAAGTTGTTTTTATTTAGACCTGGCAATTAGTGGATTTCAGTTCAGCTAATGATAATGATCAAAGAGTAATCCCAATGCCCTCATTTCTACAAAGTTAAAGTAAAAATTCTCAAATGACTTAAAATGTGAGAATGTCAGCATCATGGTCTCGTTCTGTAAAAACACAACTTTTCTCATAGATCCAAACTCAAAGCGATATGGTAAGATTGCCTCACGTATTGTCAGTGCTTTGGATATTAGGTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGGTTCAAATACTAGACTCTCTCTGGATGCTTGTGCTTTTTATTTTGATCTCATCTTGGATCACTGAACCTTTCGAAATTGCAGCTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATC</genome_strand>
        <mrna_strand>CCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAA...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCCG.....................................................................................................................................................................................................................................................GTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG..................................................................................CTAGAGACGATCAANCAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320947" ref_strand="+" ref_description="SGN-E320947 [cTOB-13-G4]">
      <seq>tctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaaagaaggtgtgaaggtgaagcttccaagatatgataaatctgcttacagtggtagaggtgacagagctgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78062" stop="76371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77762" g_stop="77504" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="339" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="391" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="433" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76973" g_stop="76895" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="512" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76817" g_stop="76786" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="544" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79">
            <donor d_prob="0.454" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76706" g_stop="76671" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="580" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E320947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77762" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76895"/>
          <exon e_start="76817" e_stop="76786"/>
          <exon e_start="76706" e_stop="76671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAGGTGAATGCACCTTTATACAGCTTCTGCTACTTTTGGCACTGCACCTATATGCTTAACTAACATTCAACTCCATCCAGGTGTGAAGGTGAAGCTTCCAAGATATGATAAAGTAAGACGGACTTGTGAACATTTAAGTCTCGGTGGGTTATTGATATTTGGTGATACTAATTCTGAAACTTTATTTCCAGTCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCC</genome_strand>
        <mrna_strand>TCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG.............................................................................GTGTGAAGGTGAAGCTTCCAAGATATGATAAA...............................................................................TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726494" ref_strand="+" ref_description="SGN-E726494 [LA11DH07]">
      <seq>aagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattttctgttgagactctgacagcactaagtaaattgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79274" stop="76600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78974" g_stop="78724" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="637" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="717" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="769" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="811" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76973" g_stop="76900" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="885" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E726494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78974" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAA</genome_strand>
        <mrna_strand>AAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726481" ref_strand="+" ref_description="SGN-E726481 [LA11DG05]">
      <seq>gagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaagtaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaaaccatgatcttccattttctggtgagactctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79272" stop="76621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78972" g_stop="78724" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="635" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="715" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="767" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="809" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76973" g_stop="76921" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="862" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E726481" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78972" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGAC</genome_strand>
        <mrna_strand>GAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGTAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAACCATGATCTTCCATTTTCTGGTGAGACTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460760" ref_strand="+" ref_description="SGN-E460760 [cPRO-32-E8]">
      <seq>aaatagcacaagtttcttctgtggacgatctttatgaattcatatgctcaggccccctcatcagtaagataggtctgacatcagaaaaggtggctgagtccattgacaagtggatagagtatgggttacggctttgtagattgtttcagctcaaccagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaggaaatttcacagcatagttccaagttcaaagaagaagaagaaatccctccactggtgattggcttcagtgcgcctcaaggatgtggaaagacaacgctagtattcgcattagaatatctttttaaaatcactgggaggagagctgctacaatatccattgatgatttttacttaacagcagaagaacaggcgaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattgtctgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78090" stop="76629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77790" g_stop="77504" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="367" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="0.94"/>
            <acceptor a_prob="0.652" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="419" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="461" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76973" g_stop="76929" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="506" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E460760" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77790" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAG</genome_strand>
        <mrna_strand>AAATAGCACAAGTTTCTTCTGTGGACGATCTTTATGAATTCATATGCTCAGGCCCCCTCATCAGTAAGATAGGTCTGACATCAGAAAAGGTGGCTGAGTCCATTGACAAGTGGATAGAGTATGGGTTACGGCTTTGTAGATTGTTTCAGCTCAACCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAGGAAATTTCACAGCATAGTTCCAAGTTCAAAGAAGAAGAAGAAATCCCTCCACTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAGACAACGCTAGTATTCGCATTAGAATATCTTTTTAAAATCACTGGGAG...............................................................................GAGAGCTGCTACAATATCCATTGATGATTTTTACTTAACAGCAGAAGAACAG...............................................................................GCGAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTGTCTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731232" ref_strand="+" ref_description="SGN-E731232 [LA26CB05]">
      <seq>caatgagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttggagtttcgtggaaatgctggaagccatgatcttccattttctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79275" stop="76631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78976" g_stop="78724" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="639" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="719" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="771" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="813" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76973" g_stop="76931" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="856" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E731232" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78976" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTG</genome_strand>
        <mrna_strand>CAATGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG......................................................................TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727869" ref_strand="+" ref_description="SGN-E727869 [LA16AA05]">
      <seq>gacagatagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaacttgcttttgggagttcgtggaaatgctggaagccatgatcttccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79276" stop="76637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78976" g_stop="78724" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="639" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="719" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="771" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="813" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76973" g_stop="76937" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="850" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E727869" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78976" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
          <exon e_start="76973" e_stop="76937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAGGTAAACAATGACGAATTTCACTTTCTTTTTTCAGAAAAAATAAAATAAAAATTTTTCATCTTCACTTCAGTTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTT</genome_strand>
        <mrna_strand>GACAGATAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGGA......................................................................GTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736452" ref_strand="+" ref_description="SGN-E736452 [LC05DC06]">
      <seq>ccgtaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaacccagggaaacttgcttttggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79276" stop="76742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78978" g_stop="78724" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="641" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="721" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="773" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77044" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="816" r_length="43" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E736452" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78978" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCAGGG-AACTTGCTTTTGGAG</genome_strand>
        <mrna_strand>CCGTAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCAGGGAAACTTGCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731392" ref_strand="+" ref_description="SGN-E731392 [LA26DH11]">
      <seq>cgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttacttaacagcggaagaacaggcaaaactaagagacagcaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79278" stop="76762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78979" g_stop="78724" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="642" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="722" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77165" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="774" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77085" g_stop="77062" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="798" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E731392" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78979" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77165"/>
          <exon e_start="77085" e_stop="77062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAGGTAAATGTTTCACAAGTTTGCTGCTTGCTAGTTTCTGTCTATGCATTATCATCAATGCTGACACATTATGTGGTTTTAGGCAAAACTAAGAGACAGCAACCCA</genome_strand>
        <mrna_strand>CGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG...............................................................................GCAAAACTAAGAGACAGCAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727561" ref_strand="+" ref_description="SGN-E727561 [LA15AC03]">
      <seq>cggtaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattggcttcagtgcgcctcaaggatgtggaaaaacaacactagtattcgcattagaatatctttttaaaatcacagggaggaaagctgcgacagtatccattgatgatttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79276" stop="76881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78978" g_stop="78724" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="641" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77375" g_stop="77296" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="721" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77216" g_stop="77181" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="757" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E727561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78978" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
          <exon e_start="77375" e_stop="77296"/>
          <exon e_start="77216" e_stop="77181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTGGTAAACACATTTTTATCATTCACTTGGCTCTTGTGTGTTTGATTTCCATTGAGGTCAATATCATGCTAGTCTGTTATGTAAAGATAGACATAAACACGCTAAAGGTAAGGTTTATTCTTGGCATGTAGATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAGGTAAGCTGCTTTCATGATTTTTTGCTTCTTCTGTGGGATAGGAAAGTAATCGAAAATTATGCTCACACATGTTAATCAGGAAAGCTGCGACAGTATCCATTGATGATTTTTACTT</genome_strand>
        <mrna_strand>CGGTAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG................................................................................................................................ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG...............................................................................GAAAGCTGCGACAGTATCCATTGATGATTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297707" ref_strand="+" ref_description="SGN-E297707 [cLET-28-C10]">
      <seq>tgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcaatcagttgtctctcaacgaggcccaaaaaattcgaatctaccactactatattccagtcttcttgtggtgtgaacaagaaatttcgcagcatagttctaagttcaaagaagaagaagaaatccctccattggtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79283" stop="77202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78983" g_stop="78724" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="646" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E297707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78983" e_stop="78724"/>
          <exon e_start="77889" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG</genome_strand>
        <mrna_strand>TGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541379" ref_strand="+" ref_description="SGN-E541379 [TUS-62-C6]">
      <seq>gtgcatgtgaaagatagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagagcaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagatttggtctgacaccatagaaggtggccgagtccattgacgagtggatagagtatggattacggctttgtagattgtttcaactcattcaattgtctctcaacgagggccaaaaaatttcaatctaccactactatatttccagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79284" stop="77276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78984" g_stop="78724" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77576" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="577" r_length="316" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E541379" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78984" e_stop="78724"/>
          <exon e_start="77889" e_stop="77576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGA-TTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATA-TTCCAGTCTTC</genome_strand>
        <mrna_strand>GTGCATGTGAAAGATAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGAGCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTTGGTCTGACACCATAGAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCATTCAATTGTCTCTCAACGAGGGCCAAAAAATTTCAATCTACCACTACTATATTTCCAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321302" ref_strand="+" ref_description="SGN-E321302 [cTOB-23-O18]">
      <seq>caaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcgaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaacgtgcattgaatgctgcgtcttcaaaagagcgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagatttggtctgacaccagagaaggtggccgagtcccattgacgagtggatagagtatggattacngctttgtagattgtttcaactncatcagttgtctctcagcgaggccaaaaaattcgaatctaccactactatattccagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79315" stop="77277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79015" g_stop="78724" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77577" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="606" r_length="314" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E321302" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79015" e_stop="78724"/>
          <exon e_start="77889" e_stop="77577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGA-TTGGTCTGACACCAGAAAAGGTGGCCGAGT-CCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTT</genome_strand>
        <mrna_strand>CAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCGAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAACGTGCATTGAATGCTGCGTCTTCAAAAGAGCGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTTGGTCTGACACCAGAGAAGGTGGCCGAGTCCCATTGACGAGTGGATAGAGTATGGATTACNGCTTTGTAGATTGTTTCAACTNCATCAGTTGTCTCTCAGCGAGG-CCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331118" ref_strand="+" ref_description="SGN-E331118 [cTOD-6-H21]">
      <seq>acaaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatagagtatggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79316" stop="77363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79016" g_stop="78724" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77663" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="520" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E331118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79016" e_stop="78724"/>
          <exon e_start="77889" e_stop="77663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTA</genome_strand>
        <mrna_strand>ACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725604" ref_strand="+" ref_description="SGN-E725604 [LA04AG10]">
      <seq>cacaaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaagaggtggccgagtccattgacgagtggataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79317" stop="77373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79017" g_stop="78724" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77673" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="510" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E725604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79017" e_stop="78724"/>
          <exon e_start="77889" e_stop="77673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGA</genome_strand>
        <mrna_strand>CACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTC-AATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAGAGGTGGCCGAGTCCATTGACGAGTGGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319372" ref_strand="+" ref_description="SGN-E319372 [cTOB-15-E6]">
      <seq>ggaaagagatagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgacaccagaaaaggtggccgagtccattgacgagtggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79276" stop="77374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78977" g_stop="78724" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77674" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="470" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E319372" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78977" e_stop="78724"/>
          <exon e_start="77889" e_stop="77674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAG</genome_strand>
        <mrna_strand>GGAAAGAGATAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342865" ref_strand="+" ref_description="SGN-E342865 [cTOF-7-L24]">
      <seq>aagctgctcacaaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagacagccgacaatggcgggattgaatatattatctcatgactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacattgccatgatgataataataatcacaattgcggcgattccaaatgctcgacaaattgtcccctttctggatacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcacgataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcacgcccactcatcagtaagattggtctgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79317" stop="77409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79026" g_stop="78724" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77709" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="484" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E342865" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79026" e_stop="78724"/>
          <exon e_start="77889" e_stop="77709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCAACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCA-GACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACC</genome_strand>
        <mrna_strand>AAGCTGC-TCACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGACAGCCGACAATGGCGGGATTGAATATATTATCTCATGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTGCCATGATGATAATAATAATCACAATTGCGGCGATTCCAAATGCTCGACAAATTGTCCCCTTTCTGGATACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCACGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCACGCCCACTCATCAGTAAGATTGGTCTGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202996" ref_strand="+" ref_description="SGN-E202996 [cLEB-1-F19]">
      <seq>gcacgagcacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactcatcagtaagattggtctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79317" stop="77412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79018" g_stop="78724" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77712" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="473" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E202996" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79018" e_stop="78724"/>
          <exon e_start="77889" e_stop="77712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGAC</genome_strand>
        <mrna_strand>GCACGAGCACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324910" ref_strand="+" ref_description="SGN-E324910 [cTOC-11-N6]">
      <seq>aactctttctcactgcgtgcatgtgaaagagagagagggccgactatggcgggattgaatatcttatctcaaactccgctgccatggcaactgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtacaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttatcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcccactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79300" stop="77431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79000" g_stop="78724" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77731" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="436" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E324910" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79000" e_stop="78724"/>
          <exon e_start="77889" e_stop="77731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCA</genome_strand>
        <mrna_strand>AACTCTTTCTCACTGCGTGCATGTGAAAGAGAGAGAGGGCCGACTATGGCGGGATTGAATATCTTATCTCAAACTCCGCTGCCATGGCAACTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTACAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTATCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366598" ref_strand="+" ref_description="SGN-E366598 [cLPT-13-F12]">
      <seq>tctcactcactgtgtgtatgtgaaagagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattctttaagatttccacatttttatgattttaataataattacaattgcggcgatttcaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgctgcctcacttctccaattcttcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaatggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatgctcaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79297" stop="77437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78997" g_stop="78724" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77737" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="429" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E366598" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78997" e_stop="78724"/>
          <exon e_start="77889" e_stop="77737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCACTGTGTGCATGTG-AA-AGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCC</genome_strand>
        <mrna_strand>TCTCACTCACTGTGTGTATGTGAAAGAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTTAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTTCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCTGCCTCACTTCTCCAATTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAATGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326401" ref_strand="+" ref_description="SGN-E326401 [cTOC-14-O3]">
      <seq>aaaaagctgcaacacaaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaaaagaacgagcactagtttcttctgtggacgatctttatgacttcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79329" stop="77445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79029" g_stop="78724" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77745" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="451" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E326401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79029" e_stop="78724"/>
          <exon e_start="77889" e_stop="77745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCAACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATG</genome_strand>
        <mrna_strand>AAAAAGCTGCAACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281440" ref_strand="-" ref_description="SGN-E281440 [cLEL-1-M11](-)">
      <seq>gcacgagcacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaacacattatctcagactccgtcgccatggcagctgtcagcttcatccacatcatcatcaatatcatattcttcaagatttccacatttttatgattttaataataattacaattgcggcgattccaaatgctcgacaaattttcccctttctggaaacccaagaccaaagcgtccaactttatcctctcaaatgcagcctcacttctccaattcatcaggcagtgaatgttcatggatgcaagataaatccgcttcttgtgataatttttcccctaacggaaggaagcaaggtgcattgaatgctgcgtcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79317" stop="77494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79018" g_stop="78724" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77794" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="391" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E281440" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281440" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79018" e_stop="78724"/>
          <exon e_start="77889" e_stop="77794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAGGTTTCAAAATTCTAGTTCTACTTTTGTTTCAATTCCAATTTCAATTATGGGTTTACTTGTTGATGGTTATGTTTATAATTCGAAGTGGGTGTGAATTTCTTTGGCGAGATTCTTCTAATTGGCAGATAATTAGCTGTGCTTGCACATAAATGCTTTGTACCTGCTCTATTAGTTGATTGATTTTGCAGTTGCTAAAATGGGGATTTCCCCCCTAGGATTGGATATATTTCTTGATAAGATGAAGTTGATGATAACTTGGCTGAACAGGTTAAAACCTAGCTATGTTAAAGAGAAAGGAGTAAAGGTTTGGAGTTGAAAACTAGAAGTAACTAAATAAAATTCTGAAGGTTATTCTTTTTTGGCCCTCGGAAGGGGAACAGCAGCTGGAAACGGCGGTTAATACCCTGTAGGCTGAGGAGCAAAGAGAGGAGGAATCTGCCAGAGGGCTGAGAGGCACTTTTTTTAAAAAAAATATATGAAAGAGATCAACTTTGAATGAATTATTCTTCTAATTTTAAATCCATATACCAAATTTTGGATAGGTTTTAGAAATTCATTATGTAATATATGAGAAGAAAGACAAACACAAACCTCTACCAGGGGATAAATGGTTTCTGCAGGTGTAAGCCGAGATGCAACTTATGCTAAATAGCGAACCTTAAAAGATGAATAGCTTAGCTAACTGTATGCAGTGGATCTTGCTTTTTCCTTCTTGTAATATATATGGTTTATTTCTTATATCAGTTGATGACTACTAATTTTATTTCTGTTAAAATGCTGCCCTGCCATGTTTTTTTTGCCCTTTTGCATTCATGGCTGATCATGGTTGTGCAGGCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAA</genome_strand>
        <mrna_strand>GCACGAGCACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAACACATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342701" ref_strand="+" ref_description="SGN-E342701 [cTOF-7-L24]">
      <seq>gctgctcacaaacacttgctgagaactctctctcactgtgtgcatgtgaaagagagagagagccgacaatggcgggattgaatatattatctcagactccgtcgccatggcagctgtcagcttcatccacatcagtcatcaatatcatattcttcaagatttccacattgtatgattataatataatacaattgcggcgatccaaatgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="79317" stop="78509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79024" g_stop="78809" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E342701" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79024" e_stop="78809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCA-TCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCG</genome_strand>
        <mrna_strand>GCTGC-TCACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCAGTCATCAATATCATATTCTTCAAGATTTCCACA-TTGTATGATTATAAT-ATAA-TACAATTGCGGCGA-TCCAAATGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425714" ref_strand="-" ref_description="SGN-E425714 [STM-45-O24]">
      <seq>caggagattgtaagagcagcacaagcttcttacaagaatcccaatctggagctagagttcttggctaattatctcaccgaactgacactgctcgaatatggcttcttgaaattcaccccgtctgctattgctgcatcatctgtattccttgcaagatggacactagatcagtcaagccacccatggagtccaacactggagcactatacctattacaaggctcaagatctgaaaaccacagttcttgcactacaaggtctacagttgaatacaaataactgccttctaaacgtcatacgtgctaaataccgacaagatgagttcaagtcagtcgcgtgtttgtcttcgccaaagctacttgagacactgtttcagacatgaaatttgaagatataagactaaccaaatggagcagcaatgctgaagcagatgacatattctataaaggggcttttttgcaacttggctcctccctaggctttttttatgagagtaactgattcaaattcacattatattgagtgttccttttgttcactcttttgctgtaaaggatttgacatactaggaatatacttaaacttagcaagtttagcagtaaaaaatgagcaactttctcagttgtaattcaagaaaatcatgcaggtaaatttgtacatgctatttttttcaactctgttacttttgccagcttttgtaatttagaatgatttgtcttaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="81114" stop="79518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80935" g_stop="80933" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80932" i_stop="80813" i_length="120">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80812" g_stop="80779" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="36" r_length="33" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80778" i_stop="80680" i_length="99">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80679" g_stop="80530" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="186" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80529" i_stop="80437" i_length="93">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80436" g_stop="80302" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="321" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80301" i_stop="80213" i_length="89">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="0.157" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80212" g_stop="79819" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="719" r_length="398" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="730"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E425714" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425714" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80935" e_stop="80933"/>
          <exon e_start="80812" e_stop="80779"/>
          <exon e_start="80679" e_stop="80530"/>
          <exon e_start="80436" e_stop="80302"/>
          <exon e_start="80212" e_stop="79819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTACTTTTGTTTCAGCCATGGTTTATTTTTACATGTGTATAACAGCATAGTGTTTCTTTTTCTTTCGTCTATGTGAAAACTGAAAATTTTCATCTTTCATATGTATGATGCTATTTGTAGGAGATTTATAAGAGCAGCACAAGCTTCTTACAAGGTAATGAATTAATGTGCATCACTTGAATGCCAAGAATGACAACAGAACTTTTCTCTGTACTGAATTTTAATTGTATTGCTGAATGATACGTAATTTCAGAATCCCAATTTGGAGCTAGAGTTCTTGGCTAATTATCTCACCGAACTGACATTGCTCGAATATGGCTTCTTGAAATTCACCCCGTCTGCTATTGCTGCATCATCTGTATTCCTTGCGAGATGGACTCTAGATCAGTCAAGCCACCCATGGGTTTGCTTCTTGAATTTCTTGTTTTCTTTTACTTTAATTCATTAGCTTTTGCATGCCTCTGGCGTGTAGAACTTATGCCTGCTACTTTGACAGAGTCCAACACTGGAGCACTATACCTATTACAAGGCTCAACATCTGAAAACCACAGTTATTGCACTACAAGGTCTACAATTGAATATAAATAACTGCCTTCTAAATGTCATACGTGCTAAATACCGACAAGAAAAGGTACTTGTATGTTATTATTCAAAATTAGCACATTTGAGTTGTCATTATATGTAGTTCCCTAATAAGTGTCTCTTTTTCCTATGCCTAAGTTCAAGTCAGTCGCGTGTTTGTCTTCGCCAAAGCTGCTTGAGACATTGTTCCAAACATGAAACTTGAAGATACAAGACTAACCAAATGAGGCAGCAAATGCTGAAGCAGATGAGATATTCTATAAAGGGGCTTTTTTGCAACTTGGCTCCTCCCTAGGCTTTTTTTATGAGAGTAACTGATTCAAA---A-TTCACATTGAGTGTTCCTTTTGTCCACTCTTTTGCTGTAAAGGCTTTGACATACTAGAAATAGACTTAAA-TGAGCAACTTTAGCAGTAAAAAATGAGCAACTTCCTCAGTTGTAATTCAAGAAAATCATGCAGGTGATTCTTTACATGCTAGTTTTTTCAACCCTGTTACCTTTGCCAGCTTTTGTAATTTAGAATGATTTGTCTCA</genome_strand>
        <mrna_strand>CAG........................................................................................................................GAGA-TTGTAAGAGCAGCACAAGCTTCTTACAAG...................................................................................................AATCCCAATCTGGAGCTAGAGTTCTTGGCTAATTATCTCACCGAACTGACACTGCTCGAATATGGCTTCTTGAAATTCACCCCGTCTGCTATTGCTGCATCATCTGTATTCCTTGCAAGATGGACACTAGATCAGTCAAGCCACCCATGG.............................................................................................AGTCCAACACTGGAGCACTATACCTATTACAAGGCTCAAGATCTGAAAACCACAGTTCTTGCACTACAAGGTCTACAGTTGAATACAAATAACTGCCTTCTAAACGTCATACGTGCTAAATACCGACAAGATGAG.........................................................................................TTCAAGTCAGTCGCGTGTTTGTCTTCGCCAAAGCTACTTGAGACACTGTTTCAGACATGAAATTTGAAGATATAAGACTAACCAAATGGAGCAGC-AATGCTGAAGCAGATGACATATTCTATAAAGGGGCTTTTTTGCAACTTGGCTCCTCCCTAGGCTTTTTTTATGAGAGTAACTGATTCAAATTCACATTATATTGAGTGTTCCTTTTGTTCACTCTTTTGCTGTAAAGGATTTGACATACTAGGAATATACTTAAACTTAGCAAGTTTAGCAGTAAAAAATGAGCAACTTTCTCAGTTGTAATTCAAGAAAATCATGCAGGTAAATTTGTACATGCTATTTTTTTCAACTCTGTTACTTTTGCCAGCTTTTGTAATTTAGAATGATTTGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425713" ref_strand="+" ref_description="SGN-E425713 [STM-45-O24]">
      <seq>gaagaagatcatgcgggttggaaacagctcaatgaatgtgtctaaagtgaccacttctgttgaccctgaagtctatcaatttccaaccaagttagcaccaaggagtagccttaatcaaagttgctcagacagaaagtcccatgaacaacaaggaaatccagtagaaatcaaaggttttccaagaaatggcatggttgggaaaactgttcgttatgcggcaccatcaacatcaacaaagttggacttcatagacattgattctgataaaaaagatccactacaatgcagtcaatatgctcatgatatatataacaatttacgggttgcagagataattagaaggccgcaatcaaatttcatggaaacactccagcgagatatcacagaaagtatgcgtgcaatccttgtcgactggattgcggaggtgtcagaggaatataagttggtgccagatacactctaccttgctgttcactttatcgatctatttctctctcaaaactatgtggaaaggaaaaacctgcagctccttggaatcacttgcatgctagttctgtttcatcactgataatgcttacacgaaaaatgaggtcctggcaatggagattcttgttctgaactttctaggtttccgactctcaactccaactgcaaagacctttctcaggagatttgtaagagcagcacaagcttcttacaagatcccaatctggagctagagttcttggctattatctcaccgactgacactgctcgatatggcttcttgaaattcaccccgtctgctattgctgcatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84449" stop="80275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84149" g_stop="84055" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84054" i_stop="83961" i_length="94">
            <donor d_prob="0.554" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83960" g_stop="83874" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="188" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83873" i_stop="83513" i_length="361">
            <donor d_prob="0.655" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83512" g_stop="83370" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="331" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83369" i_stop="82889" i_length="481">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82888" g_stop="82796" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="424" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82795" i_stop="82340" i_length="456">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82339" g_stop="82214" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="550" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82213" i_stop="81703" i_length="511">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81702" g_stop="81663" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="590" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81662" i_stop="81010" i_length="653">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81009" g_stop="80933" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="667" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80932" i_stop="80813" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80812" g_stop="80779" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="701" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80778" i_stop="80680" i_length="99">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="80679" g_stop="80575" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="802" r_length="101" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E425713" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84149" e_stop="84055"/>
          <exon e_start="83960" e_stop="83874"/>
          <exon e_start="83512" e_stop="83370"/>
          <exon e_start="82888" e_stop="82796"/>
          <exon e_start="82339" e_stop="82214"/>
          <exon e_start="81702" e_stop="81663"/>
          <exon e_start="81009" e_stop="80933"/>
          <exon e_start="80812" e_stop="80779"/>
          <exon e_start="80679" e_stop="80575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTC-----T-ACCACTTCTGTTGACCCTGAAGTCTCTCAATTTCCAGCCAAGTTACCACCAAGTATGGATCAAGATGCTGAAAGCATGTCTTTCTAATCTGAGAAGTACTATTTGAGTCAGTTTTATGAATATTCACCTGGTTTGTCTAACTGCAGGGAGTAGCCTTAATCAAAGTTGCTCAGACAGAAAGTCGCATGAACAACAAGGAAATGCAGTAGAAATCAAAGGTTTTCCAAGAAAAAGTTAGTTTCCTTTTGAACTTGTTTCATAGAGACGATATAACTTTTGACAAGCTTTTGGTTCTGGAAAGGATAACTAAGAAAAAGGAGATGATGATAACAATTGATTTCTCTGTGGTAGTTATTTATAAATCAAATGAGGGAACCTTGGTCTTATCCTCATACTTTATTCTTGAGTACTTAGAGAATATGTTTTTGACCTAAATAATGATAGTAATTCTCCATTACACTTTCTTTCTTTGACATTTTTCTCTAGAGAAAGGATTCGTATCTACTAGCTTTCTTGTGTTCCATGTAATTGTGACCATGTAGTTCTGTTAATGTTTTTCTTTTTGCATACTAAACTAATTGAACTTTTTACCAGGCATAGTTAGGAAAGCTGTTCCTGATGCAGCACTATCAACATCAACAAAGTTGGACTTCATAGACATTGATTCTGATAAAAAAGATCCACTACAATGCAGTCAATATGCTCATGATATATATAACAATTTACGGGTTGCAGAGGTTCGTTTAATTGATATTCTTGCACAGGTTTCTTAGTTGAAGAAGTAACTGGCATTCTTGCAAAGGTCATATTTGCCCAAGCAACTCAAGGATGCTTTTCACTGTTTTATTCAAAATTCGAGTTAGACAAATCAGCAACAATGCTCAACTTCCGTTATAATTTCAGTTTTATCTGCAACCATTTTGTTTCTTTTCTTTGCTAATCCTCCTTCATACATTCAATATATGTTCACTTATGAGAGAATGCTGGATACTTCAGATCAAGAACACTTTCCACTGTGACACCTACTTATCGAATGTTTTTATCTGCATATTAACAAGCATTATTTGCTTAATTTCTGAATCCAAATCTCGACTTGTATGACTTCTGAGATTTCCTTGTTTTAGGATACTGGTGTCAAGCAGTAGCCGTAGTCTTTTTCAGTTGCAGTGGATAACTGTAAACTTATCCTAATGCAGTCTCTGATTTGTATTTCTCCAGCTAATTAGATGGCCGCTTTCAAATTTCATGGAAACACTCCAGCGAGATATCACAGAAAGTATGCGTGCAATCCTTGTCGACTGGATTGTGGAGGTAAGTTGGCGTTTATCTAAAAAAAAAACAAGAAACTGAATAGTTGAAGCATATTGTGTTATGTCTTCCGGTTCTGACATATTCTAATTATTAGTACTTGATTCATCTTGAACAAATAAATGTGAAACAGATCAATTTCCTAACAGTATTAACTTGGACAAGCAACTTACAATTTCGTTCTGGGTTTTCATCATCTGGTGCTGATTCATCTTAGATCAGTTTTGAATAAGGCTTGTAAAGATCGTACGTGATTTTACTCATGATAAATCATTTGTAAGATTCTTGTGAATTTGGTGCTAGATAAGTCCGTATAATTTCTACTTGATGATGGATTCGTCCCGCCTCTCTGGCCCTTCCTTTACCTTTTCAGCTCTAATGGTTGTTAGATGCCTGCTGATTTTAGAAATGCTTTATAAGAAAGCTGGTTGCTAAGGTCATTGTCTGATCTTGTTTCAGGTGTCGGAGGAATATAACTTGGTGCCAGATACACTCTATCTTGCTGTTCACTTTATCGATCTATTTCTCTCTAAAAACTATGTGGAAAGGAAAAACCTCCAGCTCCTTGGAATCACTTGCATGCTAGTTGCCTCGTAAGCTCGACACAACTGTTTTTACTACTACAGGTTCTTTGAAATATTGCTTTCTGGGAAAATATTTTCTTGAAATGCTTAAAAGAGAAAGAAACTCCAGTCAAAGAAATGCAGGATATTTTCTTTCTAAATCAAACAGAAAACTACTTCAGAATCTTTGGATGGGTTGGCCATGCCTAATAGTTGGAGACGTCTTAGCTACGAAGTGCATGTAGGGCCAAGACTAAGGACTCCACTCATTTCAGAATCTGACAAAACAAAACTCATCATTCCATATATATGTGTGCTTATGAAGAAATGCTTAGCCAACATTTGCAGACTGCAGTGTGCCTTCACCTGTAAAAAAAGAGGACATCAAGCATTTTCGCGATCACTTTGCACTTAGTATTAAAAATCTTTCCTTTTATCCCGGAATAAAGAAATACATTTTATCTGGCTGAACATGGATTTTTCTTCCAATTTTGAAGGAAATATGAAGAGATGTGTGGTCCACGTGTTGAGGAGTTCTGTTTCATCACTGACAATGCTTACACGAAAAATGAGGTAGAATACTGCTCTTTCAAGTTCTCACAACAGGATCTAGAATTTCTGCATTACGTGACGAACAAGGGTGGGAAGGACAAGCACAGTTCCTGCATAGTAAGCTATTAGCTAGTTTAAGATGATATCTTTGGGTTCTTTTCTGTACTTCCCATGGACAACCTAATTGATGAACTTGGTCATTCATATATCTCTCCTCTCTAAACTTCACATGCAGTTTACGTTCTCTTTATGTGTCATTGTGTAATGTATATTATTTGGTATAACTATCAGGGTGTCTATTTCCCTTCAAGCTTTTGAGGTTTTTCTTAAGTTCTAGAACTTCTAGGTCTACATGAATCTCCATGCTTATTTCAAGCTAGCAAATATTGGAAGTAGATCTGTGTCTAATGTATATTATGAGAGAATCTCGAGGAACTCCTACAAGAAATGCAACTTATGCAGCATACTGTCAACAATGATTTTATGTGTACAGTTCAAAGGAAATACTATATCTGCATGAAACCTTTTGGTTACTAAAAAAGATGTCGACACCTCCCCTTTCCCCTTTATTTCTCTATCATCTTACAGAACTCCCAGAAAAAAAATGGTTTTCAGATATTATTATATACAAGTTGGACGAACTGAAGGTTCTAATATACTAAAGTGTGGAGCAGGTCCTGGCAATGGAGATTCTTGTTCTGAACTTTCTAGGTTTCCGACTCTCAACTCCAACTGCAAAGACCTTCCTCAGGTACTTTTGTTTCAGCCATGGTTTATTTTTACATGTGTATAACAGCATAGTGTTTCTTTTTCTTTCGTCTATGTGAAAACTGAAAATTTTCATCTTTCATATGTATGATGCTATTTGTAGGAGATTTATAAGAGCAGCACAAGCTTCTTACAAGGTAATGAATTAATGTGCATCACTTGAATGCCAAGAATGACAACAGAACTTTTCTCTGTACTGAATTTTAATTGTATTGCTGAATGATACGTAATTTCAGAATCCCAATTTGGAGCTAGAGTTCTTGGCTAATTATCTCACCGAACTGACATTGCTCGAATATGGCTTCTTGAAATTCACCCCGTCTGCTATTGCTGCATCATCT</genome_strand>
        <mrna_strand>GAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTCTAAAGTGACCACTTCTGTTGACCCTGAAGTCTATCAATTTCCAACCAAGTTAGCACCAA..............................................................................................GGAGTAGCCTTAATCAAAGTTGCTCAGACAGAAAGTCCCATGAACAACAAGGAAATCCAGTAGAAATCAAAGGTTTTCCAAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................GCATGGTTGGGAAAACTGTTCGTTATGCGGCACCATCAACATCAACAAAGTTGGACTTCATAGACATTGATTCTGATAAAAAAGATCCACTACAATGCAGTCAATATGCTCATGATATATATAACAATTTACGGGTTGCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGAAGGCCGCAATCAAATTTCATGGAAACACTCCAGCGAGATATCACAGAAAGTATGCGTGCAATCCTTGTCGACTGGATTGCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGGAATATAAGTTGGTGCCAGATACACTCTACCTTGCTGTTCACTTTATCGATCTATTTCTCTCTCAAAACTATGTGGAAAGGAAAAACCTGCAGCTCCTTGGAATCACTTGCATGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTCATCACTGATAATGCTTACACGAAAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCAATGGAGATTCTTGTTCTGAACTTTCTAGGTTTCCGACTCTCAACTCCAACTGCAAAGACCTTTCTCAG........................................................................................................................GAGATTTGTAAGAGCAGCACAAGCTTCTTACAAG...................................................................................................-ATCCCAATCTGGAGCTAGAGTTCTTGGCT-ATTATCTCACCG-ACTGACACTGCTCG-ATATGGCTTCTTGAAATTCACCCCGTCTGCTATTGCTGCATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455229" ref_strand="+" ref_description="SGN-E455229 [cSTS-25-P7]">
      <seq>gaagaagatcatgcgggttggaaacagctcaatgaatgtgtctaaagtgaccacttctgttgaccctgaagtctatcaatttccaaccaagttagcaccaaggagtagccttaatcaaagttgctcagacagaaagtcccatgaacaacaaggaaatccagtagaaatcaaaggttttccaagaaatggcatggttgggaaaactgttcgttatgcggcaccatcaacatcaacaaagttggacttcatagacattgattctgataaaaaagatccactacaatgcagtcaatatgctcatgatatatataacaatttacgggttgcagagataattagaaggccgcaatcaaatttcatggaaacactccagcgagatatcacagaaagtatgcgtgcaatccttgtcgactggattgcggaggtgtcagaggaatataagttggtgccagatacactctaccttgctgttcactttatcgatctatttctctctcaaaactatgtggaaaggaaaaacctgcagctccttggaatcacttgcatgctagttctgtttcatcactgataatgcttacacgaaaaatgaggtcctggcaatggagattcttgttctgaactttctaggtttccgactctcaactccaactgcaaagacctttctcaggagatttgtaagagcagcacaagcttcttacaagaatcccaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="84449" stop="80479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84149" g_stop="84055" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84054" i_stop="83961" i_length="94">
            <donor d_prob="0.554" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83960" g_stop="83874" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="188" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83873" i_stop="83513" i_length="361">
            <donor d_prob="0.655" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83512" g_stop="83370" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="331" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83369" i_stop="82889" i_length="481">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82888" g_stop="82796" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="424" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82795" i_stop="82340" i_length="456">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82339" g_stop="82214" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="550" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82213" i_stop="81703" i_length="511">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81702" g_stop="81663" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="590" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81662" i_stop="81010" i_length="653">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81009" g_stop="80933" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="667" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80932" i_stop="80813" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80812" g_stop="80779" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="701" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80778" i_stop="80680" i_length="99">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="80679" g_stop="80668" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="713" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E455229" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84149" e_stop="84055"/>
          <exon e_start="83960" e_stop="83874"/>
          <exon e_start="83512" e_stop="83370"/>
          <exon e_start="82888" e_stop="82796"/>
          <exon e_start="82339" e_stop="82214"/>
          <exon e_start="81702" e_stop="81663"/>
          <exon e_start="81009" e_stop="80933"/>
          <exon e_start="80812" e_stop="80779"/>
          <exon e_start="80679" e_stop="80668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTC-----T-ACCACTTCTGTTGACCCTGAAGTCTCTCAATTTCCAGCCAAGTTACCACCAAGTATGGATCAAGATGCTGAAAGCATGTCTTTCTAATCTGAGAAGTACTATTTGAGTCAGTTTTATGAATATTCACCTGGTTTGTCTAACTGCAGGGAGTAGCCTTAATCAAAGTTGCTCAGACAGAAAGTCGCATGAACAACAAGGAAATGCAGTAGAAATCAAAGGTTTTCCAAGAAAAAGTTAGTTTCCTTTTGAACTTGTTTCATAGAGACGATATAACTTTTGACAAGCTTTTGGTTCTGGAAAGGATAACTAAGAAAAAGGAGATGATGATAACAATTGATTTCTCTGTGGTAGTTATTTATAAATCAAATGAGGGAACCTTGGTCTTATCCTCATACTTTATTCTTGAGTACTTAGAGAATATGTTTTTGACCTAAATAATGATAGTAATTCTCCATTACACTTTCTTTCTTTGACATTTTTCTCTAGAGAAAGGATTCGTATCTACTAGCTTTCTTGTGTTCCATGTAATTGTGACCATGTAGTTCTGTTAATGTTTTTCTTTTTGCATACTAAACTAATTGAACTTTTTACCAGGCATAGTTAGGAAAGCTGTTCCTGATGCAGCACTATCAACATCAACAAAGTTGGACTTCATAGACATTGATTCTGATAAAAAAGATCCACTACAATGCAGTCAATATGCTCATGATATATATAACAATTTACGGGTTGCAGAGGTTCGTTTAATTGATATTCTTGCACAGGTTTCTTAGTTGAAGAAGTAACTGGCATTCTTGCAAAGGTCATATTTGCCCAAGCAACTCAAGGATGCTTTTCACTGTTTTATTCAAAATTCGAGTTAGACAAATCAGCAACAATGCTCAACTTCCGTTATAATTTCAGTTTTATCTGCAACCATTTTGTTTCTTTTCTTTGCTAATCCTCCTTCATACATTCAATATATGTTCACTTATGAGAGAATGCTGGATACTTCAGATCAAGAACACTTTCCACTGTGACACCTACTTATCGAATGTTTTTATCTGCATATTAACAAGCATTATTTGCTTAATTTCTGAATCCAAATCTCGACTTGTATGACTTCTGAGATTTCCTTGTTTTAGGATACTGGTGTCAAGCAGTAGCCGTAGTCTTTTTCAGTTGCAGTGGATAACTGTAAACTTATCCTAATGCAGTCTCTGATTTGTATTTCTCCAGCTAATTAGATGGCCGCTTTCAAATTTCATGGAAACACTCCAGCGAGATATCACAGAAAGTATGCGTGCAATCCTTGTCGACTGGATTGTGGAGGTAAGTTGGCGTTTATCTAAAAAAAAAACAAGAAACTGAATAGTTGAAGCATATTGTGTTATGTCTTCCGGTTCTGACATATTCTAATTATTAGTACTTGATTCATCTTGAACAAATAAATGTGAAACAGATCAATTTCCTAACAGTATTAACTTGGACAAGCAACTTACAATTTCGTTCTGGGTTTTCATCATCTGGTGCTGATTCATCTTAGATCAGTTTTGAATAAGGCTTGTAAAGATCGTACGTGATTTTACTCATGATAAATCATTTGTAAGATTCTTGTGAATTTGGTGCTAGATAAGTCCGTATAATTTCTACTTGATGATGGATTCGTCCCGCCTCTCTGGCCCTTCCTTTACCTTTTCAGCTCTAATGGTTGTTAGATGCCTGCTGATTTTAGAAATGCTTTATAAGAAAGCTGGTTGCTAAGGTCATTGTCTGATCTTGTTTCAGGTGTCGGAGGAATATAACTTGGTGCCAGATACACTCTATCTTGCTGTTCACTTTATCGATCTATTTCTCTCTAAAAACTATGTGGAAAGGAAAAACCTCCAGCTCCTTGGAATCACTTGCATGCTAGTTGCCTCGTAAGCTCGACACAACTGTTTTTACTACTACAGGTTCTTTGAAATATTGCTTTCTGGGAAAATATTTTCTTGAAATGCTTAAAAGAGAAAGAAACTCCAGTCAAAGAAATGCAGGATATTTTCTTTCTAAATCAAACAGAAAACTACTTCAGAATCTTTGGATGGGTTGGCCATGCCTAATAGTTGGAGACGTCTTAGCTACGAAGTGCATGTAGGGCCAAGACTAAGGACTCCACTCATTTCAGAATCTGACAAAACAAAACTCATCATTCCATATATATGTGTGCTTATGAAGAAATGCTTAGCCAACATTTGCAGACTGCAGTGTGCCTTCACCTGTAAAAAAAGAGGACATCAAGCATTTTCGCGATCACTTTGCACTTAGTATTAAAAATCTTTCCTTTTATCCCGGAATAAAGAAATACATTTTATCTGGCTGAACATGGATTTTTCTTCCAATTTTGAAGGAAATATGAAGAGATGTGTGGTCCACGTGTTGAGGAGTTCTGTTTCATCACTGACAATGCTTACACGAAAAATGAGGTAGAATACTGCTCTTTCAAGTTCTCACAACAGGATCTAGAATTTCTGCATTACGTGACGAACAAGGGTGGGAAGGACAAGCACAGTTCCTGCATAGTAAGCTATTAGCTAGTTTAAGATGATATCTTTGGGTTCTTTTCTGTACTTCCCATGGACAACCTAATTGATGAACTTGGTCATTCATATATCTCTCCTCTCTAAACTTCACATGCAGTTTACGTTCTCTTTATGTGTCATTGTGTAATGTATATTATTTGGTATAACTATCAGGGTGTCTATTTCCCTTCAAGCTTTTGAGGTTTTTCTTAAGTTCTAGAACTTCTAGGTCTACATGAATCTCCATGCTTATTTCAAGCTAGCAAATATTGGAAGTAGATCTGTGTCTAATGTATATTATGAGAGAATCTCGAGGAACTCCTACAAGAAATGCAACTTATGCAGCATACTGTCAACAATGATTTTATGTGTACAGTTCAAAGGAAATACTATATCTGCATGAAACCTTTTGGTTACTAAAAAAGATGTCGACACCTCCCCTTTCCCCTTTATTTCTCTATCATCTTACAGAACTCCCAGAAAAAAAATGGTTTTCAGATATTATTATATACAAGTTGGACGAACTGAAGGTTCTAATATACTAAAGTGTGGAGCAGGTCCTGGCAATGGAGATTCTTGTTCTGAACTTTCTAGGTTTCCGACTCTCAACTCCAACTGCAAAGACCTTCCTCAGGTACTTTTGTTTCAGCCATGGTTTATTTTTACATGTGTATAACAGCATAGTGTTTCTTTTTCTTTCGTCTATGTGAAAACTGAAAATTTTCATCTTTCATATGTATGATGCTATTTGTAGGAGATTTATAAGAGCAGCACAAGCTTCTTACAAGGTAATGAATTAATGTGCATCACTTGAATGCCAAGAATGACAACAGAACTTTTCTCTGTACTGAATTTTAATTGTATTGCTGAATGATACGTAATTTCAGAATCCCAATTTG</genome_strand>
        <mrna_strand>GAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTCTAAAGTGACCACTTCTGTTGACCCTGAAGTCTATCAATTTCCAACCAAGTTAGCACCAA..............................................................................................GGAGTAGCCTTAATCAAAGTTGCTCAGACAGAAAGTCCCATGAACAACAAGGAAATCCAGTAGAAATCAAAGGTTTTCCAAGAAATG.........................................................................................................................................................................................................................................................................................................................................................................GCATGGTTGGGAAAACTGTTCGTTATGCGGCACCATCAACATCAACAAAGTTGGACTTCATAGACATTGATTCTGATAAAAAAGATCCACTACAATGCAGTCAATATGCTCATGATATATATAACAATTTACGGGTTGCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGAAGGCCGCAATCAAATTTCATGGAAACACTCCAGCGAGATATCACAGAAAGTATGCGTGCAATCCTTGTCGACTGGATTGCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGGAATATAAGTTGGTGCCAGATACACTCTACCTTGCTGTTCACTTTATCGATCTATTTCTCTCTCAAAACTATGTGGAAAGGAAAAACCTGCAGCTCCTTGGAATCACTTGCATGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTCATCACTGATAATGCTTACACGAAAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCAATGGAGATTCTTGTTCTGAACTTTCTAGGTTTCCGACTCTCAACTCCAACTGCAAAGACCTTTCTCAG........................................................................................................................GAGATTTGTAAGAGCAGCACAAGCTTCTTACAAG...................................................................................................AATCCCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324947" ref_strand="+" ref_description="SGN-E324947 [cTOC-11-M8]">
      <seq>taatctcagctgcaattgagcccatggttcgagttacaagatctcgagctgctgtctctgaaaaatccatggttgctagcactggagaactgccaaagcagcggggccagaaacgtgctctgcagataagttctgacccggcaatccttagggtgaggaacaagaatgttccacttacttcctgtgtggagcagaaatgtcggccagtgcttaaggatgtcacaaatctatgttgcaacacttcaaatggagatgctgtgaaagtcccaaagaagaagaagatcatgcgggttggaaacagctcaatgaatgtgtctaccacttctgttgaccctgaagtctctcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85011" stop="83774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84711" g_stop="84443" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84442" i_stop="84155" i_length="288">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84154" g_stop="84074" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="350" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E324947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84711" e_stop="84443"/>
          <exon e_start="84154" e_stop="84074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCAGCTGCAATTGAGCCCATGGTTCGAGTTACAAGATCTCGAGCTGCTGTCTCTGAAAAATCCATGGTTGCTAGCACTGGAGAACTGCCAAAGCAGCGGGGCCAGAAACGTGCTCTGCAGATAAGTTCTGACCCGGCAATCCTTAGGGTGAGGAACAAGAATGTTCCACTTACTTCCTGTGTGGAGCAGAAATGTCGGCCAGTGCTTAAGGATGTCACAAATCTATGTTGCAACACTTCAAATGGAGATGCTGTGAAAGTCCCAGTTAGTAGTTCTTCCTGTTTTACTTGTATTATCTACATTGTCATTGACACCATGCGAAACAAGTTTCATAAATTGACTGTTGTTGAGTTCTTTAAATATCAGTAAGAGGTTTGAAATATCTGAAGTATTGCAAGTAGAGAATAGTATTGTGCATTAGAGAATTCAAGGATTCATGTGTTGTATGTGCTTCTATATTATCCTAATAAAGCTTTGGTTATAGTGTATACACTTTCCTGCTGGCTCATTTTATCCCTGTTCTTATCTGATTTAGTTTATTTTAATTGTCAGAAGAAGAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTCTACCACTTCTGTTGACCCTGAAGTCTCTCAATTT</genome_strand>
        <mrna_strand>TAATCTCAGCTGCAATTGAGCCCATGGTTCGAGTTACAAGATCTCGAGCTGCTGTCTCTGAAAAATCCATGGTTGCTAGCACTGGAGAACTGCCAAAGCAGCGGGGCCAGAAACGTGCTCTGCAGATAAGTTCTGACCCGGCAATCCTTAGGGTGAGGAACAAGAATGTTCCACTTACTTCCTGTGTGGAGCAGAAATGTCGGCCAGTGCTTAAGGATGTCACAAATCTATGTTGCAACACTTCAAATGGAGATGCTGTGAAAGTCCCA................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTCTACCACTTCTGTTGACCCTGAAGTCTCTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309250" ref_strand="+" ref_description="SGN-E309250 [cLEY-22-M23]">
      <seq>tgccatttacctgtgggcaaagctgccagataaatacatggacgacttcaaagtagttcactggctagctaagaggcatggagtagtcctgatccctggaagttccagcggttgtccaggttatcttaggatcgcctttggaggattgattgagaaggactgtcgagtagctgcagaaaggctcagaaaaggtttggaagagctggtaaattttggaatggtttcatgattctctccttgacataagtcatcaacaaaaccactaaagacactttgtaccctttaataaataattcaaaggttttaagctttgcaatttgatcattggaaatgcaagctaaaacttgcccattctgtatagtttgaaatcaagtatttcagacacctaattttcttaaatggatgatggaagtgtctcatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="87549" stop="86527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87249" g_stop="86828" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="434"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E309250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87249" e_stop="86828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGATTGAGAAGGACTGTCGAGTAGCTGCAGAAAGGCTCAGAAAAGGTTTGGAAGAGCTGGTAAATTTTGGAATGGTTTCATGATTCTCTCCTTGACATAAGTCATCAACAAAACCACTAAAGACACTTTGTACCCTTTAATAAATAATTCAAAGGTTTTAAGCTTTGCAATTTGATCATTGGAAATGCAAGCTAAAACTTGCCCATTCTGTATAGTTTGAAATCAAGTATTTCAGACACCTAATTTTCTTAAATGGATGATGGAAGTGTCTCATTT</genome_strand>
        <mrna_strand>TGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGATTGAGAAGGACTGTCGAGTAGCTGCAGAAAGGCTCAGAAAAGGTTTGGAAGAGCTGGTAAATTTTGGAATGGTTTCATGATTCTCTCCTTGACATAAGTCATCAACAAAACCACTAAAGACACTTTGTACCCTTTAATAAATAATTCAAAGGTTTTAAGCTTTGCAATTTGATCATTGGAAATGCAAGCTAAAACTTGCCCATTCTGTATAGTTTGAAATCAAGTATTTCAGACACCTAATTTTCTTAAATGGATGATGGAAGTGTCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376776" ref_strand="+" ref_description="SGN-E376776 [TUS-19-I22](-)">
      <seq>atgggatggcgagttggatatatagcatacccatcggaagtggaagggcttgcagttcaactccttaaagttcaggacaacataccgatttgtgcttcaataatctcacaacgactggctctctactcaatggaaatgggaccagaatgggtagctaatcaagttaaggaccttgtcaagaacagagaggtgctacaagaagccttatctcctttgggagagggggctgttaaagggggagaagctgccatttacctgtgggcaaagctgccagataaatacatggacgacttcaaagtagttcactggctagctaagaggcatggagtagtcctgatccctggaagttccagcggttgtccaggttatcttaggatcgcctttggaggattgattgagaaggactgtcgagtagctgcagaaaggctcagaaaaggtttggaagagctggtaaattttggaatggtttcatgattctctccttgacataagtcatcaacaaaaccactaaagacactttgtaccctttaataaataattcaaaggttttaagctttgcaatttgatcattggaaatgcaagctaaaacttgcccattctgtatagtttgaaatcaagtatttcagacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="88367" stop="86566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88067" g_stop="88047" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87473" g_stop="86866" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="629" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="641"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E376776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88067" e_stop="88047"/>
          <exon e_start="87473" e_stop="86866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGATTGAGAAGGACTGTCGAGTAGCTGCAGAAAGGCTCAGAAAAGGTTTGGAAGAGCTGGTAAATTTTGGAATGGTTTCATGATTCTCTCCTTGACATAAGTCATCAACAAAACCACTAAAGACACTTTGTACCCTTTAATAAATAATTCAAAGGTTTTAAGCTTTGCAATTTGATCATTGGAAATGCAAGCTAAAACTTGCCCATTCTGTATAGTTTGAAATCAAGTATTTCAGACA</genome_strand>
        <mrna_strand>ATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGATTGAGAAGGACTGTCGAGTAGCTGCAGAAAGGCTCAGAAAAGGTTTGGAAGAGCTGGTAAATTTTGGAATGGTTTCATGATTCTCTCCTTGACATAAGTCATCAACAAAACCACTAAAGACACTTTGTACCCTTTAATAAATAATTCAAAGGTTTTAAGCTTTGCAATTTGATCATTGGAAATGCAAGCTAAAACTTGCCCATTCTGTATAGTTTGAAATCAAGTATTTCAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710127" ref_strand="+" ref_description="SGN-E710127 [FA54BC07]">
      <seq>cgctttcgtaaatgtcgttctcacactgtgtgatgctggggattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatattcctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtattttatgtatgatgatcgcaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtggaagggcttgcagttcaactccttaaagttcaggacaacataccgatttgtgcttcaataatctcacaacgactggctctctactcaatggaaatgggaccagaatgggtagctaatcaagttaaggaccttgtcaagaacagagaggtgctacaagaagccttatctcctttgggagagggggctgttaaagggggagaagctgccatttacctgtgggcaaagctgccagataaatacatggacgacttcaaagtagttcactggctagctaagaggcatggagtattcctgatccctggaagttccagcggttgtccaggttatcttaggatcccctttggaggattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="90213" stop="86800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="158" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="265" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="324" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="433" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87473" g_stop="87100" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="807" r_length="374" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E710127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGAT</genome_strand>
        <mrna_strand>GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTATTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCCCCTTTGGAGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599466" ref_strand="+" ref_description="SGN-E599466 [52454]">
      <seq>attccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatatccctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtatttcatgtatgatgatcggaagcatgtttgcatagaagcaaaccacattgtcaacattttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtggaaggactcgcggctcaactccttaaagttcaggacaacataccaatttgtgcttcaataatctcacagcgactggctctttactcaatggaaatgggaccagaatgggtaactaatcaagtaaaagaccttgtcaagaacagagaggtgcttcaagaagccttatctcctttgggagaggaagctgttaaagggggagaaggtgccatttacctgtgggcaaagctgccagatacatacatggacgacttcaaagtagttcactggctagctaagaggcatggaatagttctgatccctggaagttccagcggttgtccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="90127" stop="86830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89827" g_stop="89757" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="178" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="346" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87473" g_stop="87130" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="690" r_length="344" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E599466" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89827" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGG</genome_strand>
        <mrna_strand>ATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATCCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCATGTATGATGATCGGAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATTTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGACTCGCGGCTCAACTCCTTAAAGTTCAGGACAACATACCAATTTGTGCTTCAATAATCTCACAGCGACTGGCTCTTTACTCAATGGAAATGGGACCAGAATGGGTAACTAATCAAGTAAAAGACCTTGTCAAGAACAGAGAGGTGCTTCAAGAAGCCTTATCTCCTTTGGGAGAGGAAGCTGTTAAAGGGGGAGAAGGTGCCATTTACCTGTGGGCAAAGCTGCCAGATACATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAATAGTTCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376777" ref_strand="+" ref_description="SGN-E376777 [TUS-19-I22]">
      <seq>atactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatattcctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtattttatgtatgatgatcgcaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtggaagggcttgcagttcaactccttaaagttcaggacaacataccgatttgtgcttcaataatctcacaacgactggctctctactcaatggaaatgggaccagaatgggtagctaatcaagttaaggaccttgtcaagaacagagaggtgctacaagaagccttatctcctttgggagagggggctgttaaagggggagaagctgccatttacctgtgggcaaagctgccagataaatacatggacgacttcaaagtagttcactggctagctaagaggcatggagtagtcctgatccctgnaagttccagcggttgtccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="89372" stop="86831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89072" g_stop="88990" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="251" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87473" g_stop="87131" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="594" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E376777" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89072" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAG</genome_strand>
        <mrna_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGNAAGTTCCAGCGGTTGTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238028" ref_strand="+" ref_description="SGN-E238028 [cLED-18-H16]">
      <seq>ttaagaggatatctgatatttgtaaggaagttggatgttggctcgtaattgataacacatatgagtattttatgtatgatgatcgcaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtgtaagggcttgcagttcaactccttaaagttcaggacaacataccgatttgtgcttcaataatctcacaacgactggctctctactcaatggaaatgggaccagaatgggtagctaatcaagttaaggaccttgtcaagaacagagaggtgctacaagaagccttatctcctttgggagagggggctgttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="89168" stop="86960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88994" g_stop="88990" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="64" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="173" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87473" g_stop="87260" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="387" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E238028" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88994" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAG</genome_strand>
        <mrna_strand>TTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGTTGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGTAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409464" ref_strand="+" ref_description="SGN-E409464 [PPI-14-K19]">
      <seq>gcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatatccctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtatttcatgtatgatgatcggaagcatgtttgcatagaagcaaaccacattgtcaacattttttccttctccaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtggaaggactcgcggctcaactcccttaaagtcaggacnacataccaatttgtgcttcataatctcacagcgactggctctttactcaatggaaatgggaccagaatgggtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="91951" stop="87039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91651" g_stop="91553" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="159" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="316" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="423" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="482" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="590" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87473" g_stop="87339" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="724" r_length="134" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409464" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91651" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACT-CCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCT</genome_strand>
        <mrna_strand>GCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATCCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCATGTATGATGATCGGAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATTTTTTCCTTCTCC-AAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGACTCGCGGCTCAACTCCCTTAAAG-TCAGGACNACATACCAATTTGTGCTTC-ATAATCTCACAGCGACTGGCTCTTTACTCAATGGAAATGGGACCAGAATGGGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560722" ref_strand="+" ref_description="SGN-E560722 [20420]">
      <seq>gtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgaggccttcctgagcttaggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacgtatatccctgagtcgcttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtatttcatgtatgatgatcggaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagtggaagggctcgcaagtcaaatccttaaagttcaggacaacaataccgatttgtgcttcaataatctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="91939" stop="87086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91639" g_stop="91553" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="145" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="302" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="409" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="468" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="577" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87473" g_stop="87386" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="666" r_length="89" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E560722" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91639" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAAC-ATACCGATTTGTGCTTCAATAATCTCAC</genome_strand>
        <mrna_strand>GTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGA-GGCCTTCCTGAGCTTA-GGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACGTATATCCCTGAGTCGCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCATGTATGATGATCGGAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGTGGAAGGGCTCGCAAGTCAAATCCTTAAAGTTCAGGACAACAATACCGATTTGTGCTTCAATAATCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240773" ref_strand="+" ref_description="SGN-E240773 [cLED-24-I4]">
      <seq>atactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatattcctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtattttatgtatgatgatcgcaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacccatcggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="89372" stop="87154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89072" g_stop="88990" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="251" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87473" g_stop="87454" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="271" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E240773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89072" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
          <exon e_start="87473" e_stop="87454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATATGTAAGTGATTCTTGTTCTAACTTATATCTAGAAATGTAATGATACTGGGCACACAACTCACAAGTGATTAGTCATCTGTTAAGTGACTCTTGACACAACCAGAAAAATATATCTCTGGTTAAAAGATGATTTTTCTATGTTTTCCCCAACTGCATCTTCTTGCCTCATAAACTCCCACACCTTTACCTATATCCCAAAATTAAACTGCTTCTCTTTACTCGCACATCTCTTTTTAAAACCAGCATGTATGACACCTCTAATATATCTCTCTATACTTGTTATTCATTAGCTTTTATAAAAAACATGTATCTGGCTGCGTTATCTGCCAGAATTGGATATAAAACTGGTCTCATTAGAAACCAAATACAAGTGTTCTTTTGCAACAAAAATGAGTTGTTCCAACAGCTAAGACTTATTGCGAATGAGGCATGATTGCTTTAGGACATGTTTTTTCTGCAATGTTAATTTTGCAGCAAAATTCCTCAGCTAACTTTTGTACTGAATATTTACTCATGAATTAGGTAAGTTTTTTCATCTTGTGAAGCGAGCTAAACTCATGTCTTATGGATGCAGATAGCATACCCATCGGAAGT</genome_strand>
        <mrna_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATACCCATCGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231098" ref_strand="+" ref_description="SGN-E231098 [cLED-5-J8]">
      <seq>atactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatattcctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatgagtattttatgtatgatgatcgcaagcatgtttgcatagaagcaaaccacattgtcaacatcttttccttctccaaagcatatgggatgatgggatggcgagttggatatatagcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="89372" stop="87744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89072" g_stop="88990" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88155" g_stop="88047" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="251" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E231098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89072" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
          <exon e_start="88155" e_stop="88047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGAGTAAGTGATTTTTTCTGTTGAATACAAATCTTTTAGTTTCTCATATTGAATTGAGTGCTTGATGTTAATTACTGGTGCTAATTTGTTTTTCTGTCTGTGGACGAATGATGATGGTCTTAGAACTAAAGATGATGAGGGAAGTAGTTGTTGAATTGACTAATCCTGGAATACTTTTAGTTAGACCAGCAAGAGTCTTTTGAATAAAACCAAGGATACAGGTCGTTTGTGTTGGCATTGAGAGGAAATATTTATGATTTGTGAACTTTTAACTTACACTAAATTTGCTTGGCAAGAAAATATATGCTATCCTGGGATCTGTTGCAGAATTTTAATAGGTATGAAGGGGAGGAAAGGAAATAGCTAAGATGACAGAAGGATCAGTCTTGAATTCATCCTTATTGGCCAACTTGTTGCTGTTTTTTCTCAATCCCTAGTTGACAAATAAGCCTATAAAGTTGTTTTCTCAAGGAGTTAGATAGTTAAGACATGTATCTATTGAGTCGTTGCTCCTCCATGAATGCAAACATATTGTTCTGTCGAATATCATCACTGTCCCTTCTTTTTCTTGCAACTTTTTTCTGTACACTATGTTTGTGGTTTTCTGTTTTCCTGAATGATATGTTCTTATATATACGTTGCAAGTTATTTGCAGGTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT</genome_strand>
        <mrna_strand>ATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557832" ref_strand="+" ref_description="SGN-E557832 [16692]">
      <seq>attttttttgctttctgggtaggcggataagaactcttttcttcgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatatccctgagtcccttcttaagaggatatctgatatttgtaaggaaacggggatgttggtcgtaattgataacacatatgagtatttcatgtatgatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="88489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93066" g_stop="92915" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="197" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="326" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="386" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="543" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="650" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88866" g_stop="88808" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="709" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E557832" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93066" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGC-GGGATGTTGGCTCGTAATTGATAACACATATGA</genome_strand>
        <mrna_strand>ATTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTCGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATCCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAACGGGGATGTTGG-TCGTAATTGATAACACATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450257" ref_strand="+" ref_description="SGN-E450257 [cSTS-8-H22]">
      <seq>attttttttgctttctgggtaggcggataagaactcttttcttcgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacatatatccctgagtcccttcttaagaggatatctgatatttgtaaggaagcgggatgttggctcgtaattgataacacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="88509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93066" g_stop="92915" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="197" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="326" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="386" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="543" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="650" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88866" g_stop="88809" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="708" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E450257" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93066" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATG</genome_strand>
        <mrna_strand>ATTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTCGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATCCCTGAGTCCCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487400" ref_strand="+" ref_description="SGN-E487400 [cSTE-25-M2]">
      <seq>tttttttttgctttctgggtaggcggataagaactcttttctttgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccggcaatccatcaggaacgtatatccctgagtcgcttcttaagaggatatctgatatttgtaaggaagcgggatgntggctcgtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="88521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93066" g_stop="92915" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="197" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="326" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="386" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="543" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="88990" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="650" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88866" g_stop="88821" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="696" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E487400" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93066" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="88990"/>
          <exon e_start="88866" e_stop="88821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAGGTCTCTTATCTCATCTTTATAGATATGATAGATTGTTGAAGTCCTCAATTATCAAATGCATTAGTATTGTCGTGTGGTTTTTACTTTATTGAAACATTAACAAGTTGAGTTTTTGTCATGTAGAGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTG</genome_strand>
        <mrna_strand>TTTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTTGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACGTATATCCCTGAGTCGCTTCTTAAG...........................................................................................................................AGGATATCTGATATTTGTAAGGAAGCGGGATGNTGGCTCGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329087" ref_strand="+" ref_description="SGN-E329087 [cTOC-24-N3]">
      <seq>tttactttctgggtaggtggataagaactcttatctttgaagggtttttttttttttttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagggctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaagtaataaaggttgtatttctctagctcagggagtagtgtactggcaaccacctgcgcaagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgaacttagggaggcattgatgcaaaagttgggtcgtgaaaataacctacataaatcttcagtgatggttactgccggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggggattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93360" stop="88732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93060" g_stop="92915" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="194" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="323" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="383" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="540" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="89031" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="606" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E329087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93060" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="89031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCG</genome_strand>
        <mrna_strand>TTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486594" ref_strand="+" ref_description="SGN-E486594 [cSTE-22-L13]">
      <seq>tttctatataagttccaacctttttgtaagatttttcagaaaggaaaaaggcctttttttttgctttctgggtaggcggataagaactcttttctttgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcactgttgttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93418" stop="88734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93119" g_stop="92915" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="379" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="439" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="596" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="89034" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="659" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E486594" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93119" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="89034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTT--ACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATC</genome_strand>
        <mrna_strand>TTTCTATATAAGTTCCAACCTTTTTGTAAGAT-TTTTCAG-AAAGGAAAAAGGCCTTTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTTGAAGG-TTGTGTT-TATT-TTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338051" ref_strand="+" ref_description="SGN-E338051 [cTOE-14-H6]">
      <seq>gaaatggggtcttttggaatgcttgctagaagggctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaagtaataaaggttgtatttctctagctcagggagtagtgtactggcaaccacctgcgcaagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgaacttagggaggcattgatgcaaaagttgggtcgtgaaaataacctacataaatcttcagtgatggttactgccggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggggattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccccaaagcttgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93280" stop="88744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92980" g_stop="92915" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="114" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="243" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="303" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="460" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="89044" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="513" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E338051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92980" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="89044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACT</genome_strand>
        <mrna_strand>GAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480983" ref_strand="+" ref_description="SGN-E480983 [cSTD-16-E7]">
      <seq>tttttttgctttctgggtaggcggataagaactcttttcttcgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctgatgcagactggttggagagtactctaaagaatactgtaccaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="88758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93064" g_stop="92915" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="195" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="324" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="384" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89757" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="541" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89096" g_stop="89058" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="580" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E480983" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93064" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89757"/>
          <exon e_start="89096" e_stop="89058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAGGTTTGTACTTTCATATGATGTTCATTTCGTGGTAGCCTCCGCATTATTAAGACACTACTATTCCTTCCATTAGTTTTCCTTAAGACTGATTATACTAGATATTGTGGTATACATCTCTTTTGTGCTAGCATGCATGTTCAAGTTAGAGTGAACATCCGTTTTATCTTTGTCGTCTGAGCACTCGGGAATATATCGAAATCACTATTCACATTTGCACTATGAGTTACTTTTTCCCCCTTTGCTGAAATTTTTCAATAAACTCCATTTTCTCCGAATCTAACACTATTTGTGTAGAAATCAACTGAAGATAAGGTTGCTGCAGAATAGTGTTCTGCTTTGTGTTGCAAGTTGAGTAAATGATCTTGATTTGTTGAATGTTGTCTGGAAAACATTTGTTCTGTGCTTTTTCTTGTATTGGATGTCCTCACCACATCCCCACCAGAAAGAAAAGAAAAATAAAAAATGAAATTAGTAAACTTCAGTCCCGATTATTGACCTGATTTAAGTATGTTATAACTTAAAGTTTGACACTTTGATGCATAATCTAACCTAAATATTGCAACTGTTTTGCGAAATTGACTTGAGAATTTCAAAACATATCTGCCTTTTTTGTTTGATTGTCTATGAGTTTGACATATTCCATAATTTCTCAATTTTCAGACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCC</genome_strand>
        <mrna_strand>TTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTCGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570646" ref_strand="+" ref_description="SGN-E570646 [15263]">
      <seq>gaaatggggtcttttggaatgcttgctaaagagctgtgcttaacgagacaccagttatggttcagataccagaactggttcgaaggtaataaagattgtatttctctagctcaagggagtagtgtactggcaaccacctgcgcgagcacttgaacaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgattagggccttcctgagcttaaggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcagctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagcatgacaggtgttaccgatattctggtgggtcctggtgatgcaaagacactccatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93280" stop="89462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92980" g_stop="92915" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="115" r_length="50" r_score="0.875"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="245" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="304" r_length="59" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89762" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="457" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E570646" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92980" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAA-GTAATAAAGGTTGTATTTCTCTAGCTC-AGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAA-AAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAG-ATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGA</genome_strand>
        <mrna_strand>GAAATGGGGTCTTTTGGAATGCTTGCTA-AAGAGCTGTGCTTAACGAGACACCAGTTATGGTTCAG...................................................................................................................ATACCAGAACTGGTTCGAAGGTAATAAAGATTGTATTTCTCTAGCTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAACAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATTAGGGCCTTCCTGAGCTTAAGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGCATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340091" ref_strand="+" ref_description="SGN-E340091 [cTOF-3-P7]">
      <seq>agcagtcaaatttattcattaatttaacaaaaagatccaatttttatattttttacgatctcattctatataagttccaatctttttgcaagatcttttcagaaaaggaaaaaaggccttttttactttctgggtaggtggataagaactcttatctttgaagggtttttttttttttttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagggctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaagtaataaaggttgtatttctctagctcagggagtagtgtactggcaaccacctgcgcaagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgaacttagggaggcattgatgcaaaagttgggtcgtgaaaataacctacataaatcttcagtgatggttactgccggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggggattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctggtgggtcctggtgatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93481" stop="89478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93181" g_stop="92915" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="315" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="444" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="504" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89778" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="640" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E340091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93181" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCAAATTTATTCATTAATTTAACAAAAAGATCCAATTTTTATATTTTTTACGATCTCATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAA</genome_strand>
        <mrna_strand>AGCAGTCAAATTTATTCATTAATTTAACAAAAAGATCCAATTTTTATATTTTTTACGATCTCATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481050" ref_strand="+" ref_description="SGN-E481050 [cSTD-16-E8]">
      <seq>tttttttgctttctgggtaggcggataagaactcttttcttcgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcatatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaagctttcgtaaatgtcggtctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcacacatgtcattccagatgacaggtgttaccgatattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="89497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93064" g_stop="92915" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="195" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="324" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="384" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89797" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="501" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E481050" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93064" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTG</genome_strand>
        <mrna_strand>TTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTCGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAT...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGGTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409795" ref_strand="+" ref_description="SGN-E409795 [PPI-15-G21]">
      <seq>ctttttttttgctttctgggtaggcggataagaactcttttctttgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcgttatgtttgcaccatactatttcaatgcacacatgtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93314" stop="89524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93067" g_stop="92915" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="198" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="327" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="387" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89824" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="477" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409795" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93067" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTC</genome_strand>
        <mrna_strand>CTTTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTTGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407721" ref_strand="+" ref_description="SGN-E407721 [PPI-8-G6]">
      <seq>aaagatccaatttttataatttttacgatctctctctttctatataagttccaacctttttgtaagatttttcagaaaggaaaaaggcattttttttgctttctgggtaggcggataagaactcttttcttcgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcaggctttcgtaaatgtcgntctcacactgtgtgatgctggcgattcggtcattatgtttgcaccatactatttcaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93451" stop="89534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93151" g_stop="92915" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="414" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89834" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="554" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E407721" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93151" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCCAATTTTTATATTTTTTACGA----TCTCATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAG-GCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACA</genome_strand>
        <mrna_strand>AAAGATCCAATTTTTATAATTTTTACGATCTCTCTCTTTCTATATAAGTTCCAACCTTTTTGTAAGAT-TTTTCAG-AAAGGAAAAAGGCATTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTCGAA-GG--TTGTGTTTATTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGNTCTCACACTGTGTGATGCTGGCGATTCGGTCATTATGTTTGCACCATACTATTTCAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486674" ref_strand="+" ref_description="SGN-E486674 [cSTE-22-L14]">
      <seq>tttctatataagttccaacctttttgtaagatttttcagaaaggaaaaaggcctttttttttgctttctgggtaggcggataagaactcttttctttgaaggttgtgtttattttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagagctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaggtaataaagattgtatttctctagctcagggagtagtgtactggcaaccacctgcgcgagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgagcttagggaggcgttgattcaaaagttgggtcgtgaaaataacctacataaatcctcagtgatggttactgctggtgcaaatcangctttcgtaaatgtcgttctcacactgtgtgatgctggcgattcggtcgttatgtttgcaccatactatttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93418" stop="89539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93119" g_stop="92915" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="379" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="439" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89839" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E486674" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93119" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTT--ACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAAT</genome_strand>
        <mrna_strand>TTTCTATATAAGTTCCAACCTTTTTGTAAGAT-TTTTCAG-AAAGGAAAAAGGCCTTTTTTTTTGCTTTCTGGGTAGGCGGATAAGAACTCTTTTCTTTGAAGG-TTGTGTT-TATT-TTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGAGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAGGTAATAAAGATTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCGAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAGCTTAGGGAGGCGTTGATTCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCCTCAGTGATGGTTACTGCTGGTGCAAATCAN...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGCGATTCGGTCGTTATGTTTGCACCATACTATTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318824" ref_strand="+" ref_description="SGN-E318824 [cTOB-11-P23]">
      <seq>ccttttttactttctgggtaggtggataagaactcttatctttgaagggttttttttttttttttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagggctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaagtaataaaggttgtatttctctagctcagggagtagtgtactggcaaccacctgcgcaagcacttgaaaaggtgaaataagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgaacttagggaggcattgatgcaaaagttgggtcgtgaaaataacctacataaatcttcagtgatggttactgccggtgcaaatcaagctttcgtaaatgtcgttctcacactgtgtgatgctggggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93365" stop="89570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93065" g_stop="92915" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="200" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="329" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="389" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89870" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="433" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E318824" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93065" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGG-TTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTC</genome_strand>
        <mrna_strand>CCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAATAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208680" ref_strand="+" ref_description="SGN-E208680 [cLEC-39-J1]">
      <seq>ccaatctttttgcaagatcttttcagaaaaggaaaaaaggccttttttactttctgggtaggtggataagaactcttatctttgaagggtttttttttttttttattgttttagagagaaaagaggaaatggggtcttttggaatgcttgctagaagggctgtgcttaccgagacaccagttatggttcagatacaagaactggttcgaagtaataaaggttgtatttctctagctcagggagtagtgtactggcaaccacctgcgcaagcacttgaaaaggtgaaagaagctatctgggaaccttcagttagtcgctatggtgccgatgagggccttcctgaacttagggaggcattgatgcaaaagttgggtcgtgaaaataacctacataaatcttcagtgatggttactgccggtgcaaatcaggctttcgtaaatgtcgttctcacactgtgtgatgctgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="93405" stop="89573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93105" g_stop="92915" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92799" g_stop="92752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="239" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91681" g_stop="91553" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="368" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91352" g_stop="91293" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="428" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89913" g_stop="89873" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="469" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E208680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93105" e_stop="92915"/>
          <exon e_start="92799" e_stop="92752"/>
          <exon e_start="91681" e_stop="91553"/>
          <exon e_start="91352" e_stop="91293"/>
          <exon e_start="89913" e_stop="89873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAGGTAAATTTCAAGAATATAGATTGGATTTGTTGTTTTTTTTATGTTTGTTTGGTTTAAATTTCTGTGCATTGATGGGATGTCTTGTTGTTGTTGTTGTTGTGTTTTTGCAATATAGATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAGGTTTGTTTACTAGCTCCAATGTTTTGTTTCATTAGTTTTATTATTCTAATCACCATTGAAAGGTTCAAGAAGCTGAGAACTTTGATAAAATTCATCTGTGTTGTGGTGGTTTTGAAGCCTACAGATCATCTTTTTTTGTGCCTTTCGAAATTTTGATTAGATTGACTTAGATTAAATTTGTCTGATTCATTCTTGGGGTTATCAATTTCAATTTTTTTGGTTGAAATGTGGGTTGCTTAATATTTAAGGTAGTGATGGAAAAACTAATAAATTCCAGTTGGACTTCTCTCCCATGTAATGAATGTATTTGCAGATGGTTTTTGAATATGGAAAATGGAGATTATGACTGGCCACTGAGCTGTGTGGGTAAAAGGGTTTTGTGGATGGGTTACGGGCCTAGAGCACACATAAAGGTGGTGCTACTAGCATAAGGTTGACATCCTGTCTATCCTTAAGTTCCTCTGGTGATTGCAAATAACTTAAATTGCCTGAGATTCTGGTTTTGTCAAGAAATTTTCTGGGGTTTCTCCCATGATGTTTGGAGTGACAAAACTTTTTTGCTAGTATGTTCCATAGTCAGTTTGTCCTTTTCCTGTGAAAAAAGCGTCGTCATACTTTTCTCTTGATCTGTTTTTATTTGAGTTGACCAAGTATGCTGTGATCCAGAAGAATATCTGCAGCCCCCATGCTGCGAGAAATTATCCTTAAGTGTTATCCGTCTAGTGTTAGACTATTTTACGAAGGACTGATACTATTACAATCTCTCAGGACCGATCTTTCGACAAGCAAGTTTAATCAACCTCCATATTAAAAAAATAGTTTAATCAACCTAAACCTACCAACGGAAGTTTTAAAAGCTGTCTAGTTTGCTGGGGTCCTGGGGAATGGGTGGGTACTTATTGCTTCTTATGTATCTTCCAGAAAGAGTAAACAAAAAGAATAGAGTTATCTGTTGTGGGTGGATCTTTCTGTTAGATTGAGAAGTTATATTGGTTTTGCCTGAATATGGTTTGTCCATGTTTTCCGTCCATATATCTTGGTACCATCTTATTTTCTTCTCCGTCTTGCAGGGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAGGTATGGTTTATCAGTTGGATTTCTTTGGTACTCTGGTTTGCATCTTATAGGAACAAAAATTGGAGTGGCGTATGGTACTTTGCCTAGTGAACCAGTAGTTACTGTCACATTCATTTCATGCTTTCAAACTATATTATTCACTCGTTGAGATTTGATTTTTACATCTTTCAGTCTAATACTTTCTTTGTGCTCTTCTCCAGTTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAGGTAAAATGTTACTTTAATGCTATTCAGTCATTTGAGGGTGTAGGTACCAGTCAGCTTGCCTCTCTTTCTTACCTGCTCTTAATAGTAGTAGGCTGCCTTTCTTTCTCGCCTTTCTTCCAGCTTTCTTGAGTTAGAGTGGATTGAGATTGATTCTACTCCACCTTCATACCAGGTTCATTTGCTTTGACAAAGGACCAGTATTCGGTGCATGCTTACTTCATCTTCCTTAGCTATTCTTCAGTTCCCCTTTTCCCTTCATTTTTATGTTTAGAGTTGGCTAGTTCAGACTAGGAATGTGGTAGGGCTCCTCAAAGGAAGTGCAATTTTCTACTATTGCATTGTCATCATACTAAGAGATTCATCTCCTTGTGAGTGAATGTTTTTCCTTTCTTTTTTCTCCCCTTTCTCTCTCTCTCCCCCTCTTCGGGGAAGACTTGTTAGAGTCTATGTTGTCAACAAAATGCTAGCTTCCATATAGTGCTTTTCCTGATAAACGCTATGGAGAACTTATGAAAAGACAAATAGAACTGCTTCACTCGTGAAATTTTTCTTCTTTGTATATCATGATGTGTACTGAAAGTTCGTGTGCTTTTGAGATGTGGATTTTATTTCTTCTGCTTCTACCCATCTAAAGATTATTCTTCTGTTTATGTATATTTTTCTTGATAAAAGAAGATTACTCTTCTGTTGTGGGCTTATTCAGCTCCATGCTACAACTTGATCAAAAATTGCTCTGTTTTTTGTTTTTTTTATAAAACCTCTTTTAGTTCTTGCATGCTATCACTATATTTTTGTATGTTGTCGCTCTCATGAGATGGCAATCTTGCAATGGGAACATCTGCAGCAACAAAACTCGCCATTTAGAATCATCCGTCAGAAACATATTAGAGAAAAATCTACTGACATACCTAAAATGCTCAAGCACTTGAACCTCACAATTTTGTCTGCAAAATGGAACTTGGGATTAGTTAGGGTAATAATTTGAGATTTAATTGGATAGACTTTCCATGACTGATTAAATGATGGTTCAATAGGCTCACAAAGTATGAGTACAGAGTACAGAGTACCGAGTACTGAGTACAGACCTATCATTACGTACCTGTCGTTACAGAGCAGTATTCTCTTTTTTGAATAGGAGAGTGGTGTCCTCAATAGTGCTCCAAATTAATATCACTATTTACTACTATAAACAAATTCAGATGCTATCTTATGCTGAATAAAGATAATAGAGCTATGTTAAAGAGCCATTTGTAGTGAAACAGAGATGCTACATTTATGGGTAAATTAATTGGTGCATAAATCTATGTTAGTGACTAATGGACGAGCTGTATCCCTATCGCTGAGAAATCTCTAATGGAATCTTATTGGGTTGATTTCAGGCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGA</genome_strand>
        <mrna_strand>CCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG...................................................................................................................ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG........................................................................................................................................................................................................TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320023" ref_strand="+" ref_description="SGN-E320023 [cTOB-21-C1]">
      <seq>cagctttatggcgagtattattgtctaaatgtgcatatcacgtgaatatggatattgcttggaggatgagtgataggttgttggagattaacccaatggatgattcagcttatgtaattttggctaatgcttatgcaagtgcaggtaggtgggatgaggtgagggaggtgtggaagagaatgaaggataagaaagtgaggaaggaaggtgggaagagttggattgaagcgctgggagaggttcatatgtttttagctggtgataggaggcatgagagaaccgatgagatttatgccaagttaacagagttaatggaggagattgagaaactgggctatgtgcccgtatggactgaaatgttgcatgaagtagaagagaaggagaagaagaaatcactttggcatcacagtgagaagctggcattggcatttggattgttgaatggaacagcaccacctggtaaagctttgcggattgtgaagaatttgagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="98415" stop="97321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98115" g_stop="97621" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E320023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98115" e_stop="97621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTATGGCGAGTATTATTGTCTAAATGTGCATATCACGTGAATATGGATATTGCTTGGAGGATGAGTGATAGGTTGTTGGAGATTAACCCAATGGATGATTCAGCTTATGTAATTTTGGCTAATGCTTATGCAAGTGCAGGTAGGTGGGATGAGGTGAGGGAGGTGTGGAAGAGAATGAAGGATAAGAAAGTGAGGAAGGAAGGTGGGAAGAGTTGGATTGAAGCGCTGGGAGAGGTTCATATGTTTTTAGCTGGTGATAGGAGGCATGAGAGAACCGATGAGATTTATGCCAAGTTAACAGAGTTAATGGAGGAGATTGAGAAACTGGGCTATGTGCCCGTATGGACTGAAATGTTGCATGAAGTAGAAGAGAAGGAGAAGAAGAAATCACTTTGGCATCACAGTGAGAAGCTGGCATTGGCATTTGGATTGTTGAATGGAACAGCACCACCTGGTAAAGCTTTGCGGATTGTGAAGAATTTGAGAATTT</genome_strand>
        <mrna_strand>CAGCTTTATGGCGAGTATTATTGTCTAAATGTGCATATCACGTGAATATGGATATTGCTTGGAGGATGAGTGATAGGTTGTTGGAGATTAACCCAATGGATGATTCAGCTTATGTAATTTTGGCTAATGCTTATGCAAGTGCAGGTAGGTGGGATGAGGTGAGGGAGGTGTGGAAGAGAATGAAGGATAAGAAAGTGAGGAAGGAAGGTGGGAAGAGTTGGATTGAAGCGCTGGGAGAGGTTCATATGTTTTTAGCTGGTGATAGGAGGCATGAGAGAACCGATGAGATTTATGCCAAGTTAACAGAGTTAATGGAGGAGATTGAGAAACTGGGCTATGTGCCCGTATGGACTGAAATGTTGCATGAAGTAGAAGAGAAGGAGAAGAAGAAATCACTTTGGCATCACAGTGAGAAGCTGGCATTGGCATTTGGATTGTTGAATGGAACAGCACCACCTGGTAAAGCTTTGCGGATTGTGAAGAATTTGAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299813" ref_strand="+" ref_description="SGN-E299813 [cLEW-1-I23](-)">
      <seq>agcactgatcagctttcctgttattcattgtccacaagcatatggtgttgtcctgaaggcggcggataggactaacagcactgggaaaaagataccggggtggaaaattgtttactctggcgacacgaggccttgtccagaactagttgcagcgtcccatggggccacagttcttattcatgaggctacctttgaagatggcatggtggaagaagccatagcgagaaatctcagcacaacacaggaagctattgaagtaggggacgctgctggagcatatcgaatcatcctcactcatttcagtcaaagataccctaaaattccagtttttgacgaaacacacatgcacaaaacaagcattgcttttgatatgatgagtgttaacttagcagacctacccatgcttccaagagttcttccatatcttaaactgctatttcgtgatgaaatgattgttgatgaatctgataatgtaaatgttgccacagcagcagctatttgagttactgaataacacacactgtaaaatttctttctattcatttatacgcaggagttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103810" stop="102467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103510" g_stop="103327" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103326" i_stop="103149" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103148" g_stop="102767" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="566" r_length="382" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E299813" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103510" e_stop="103327"/>
          <exon e_start="103148" e_stop="102767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTGATCAGCTTTCCTGTTATTCATTGTCCACAAGCATATGGTGTTGTCCTGAAGGCGGCGGATAGGACTAACAGCACTGGGAAAAAGATACCGGGGTGGAAAATTGTTTACTCTGGCGACACGAGGCCTTGTCCAGAACTAGTTGCAGCGTCCCATGGGGCCACAGTTCTTATTCATGAGGCAAGTTGTGAAATGTCTTTATGGTTTTCCCCCTATTTGATTACACAATAAATCCTTCCAAGTTTTCAATAGAATCTTACAACATGCTATACTCTTGGCTTAACAATTCTCATAAAAATTTCAGTTGCCACATGTTCCCCATTTTAGCATATATAAAATTTTCGGGGTTTTAATGCAGGCTACCTTTGAAGATGGCATGGTGGAAGAAGCCATAGCGAGAAATCACAGCACAACACAGGAAGCTATTGAAGTAGGGGACGCTGCTGGAGCATATCGAATCATCCTCACTCATTTCAGTCAAAGATACCCTAAAATTCCAGTTTTTGACGAAACACACATGCACAAAACAAGCATTGCTTTTGATATGATGAGTGTTAACTTAGCAGACCTACCCATGCTTCCAAGAGTTCTTCCATATCTTAAACTGCTATTTCGTGATGAAATGATTGTTGATGAATCTGATAATGTAAATGTTGCTACAGCAGCAGCTATTTGAGTTACTGAATAACACACACTGATCAATTTCTTTCTATTCATTTATACGCAGGAGTTAAATCACA</genome_strand>
        <mrna_strand>AGCACTGATCAGCTTTCCTGTTATTCATTGTCCACAAGCATATGGTGTTGTCCTGAAGGCGGCGGATAGGACTAACAGCACTGGGAAAAAGATACCGGGGTGGAAAATTGTTTACTCTGGCGACACGAGGCCTTGTCCAGAACTAGTTGCAGCGTCCCATGGGGCCACAGTTCTTATTCATGAG..................................................................................................................................................................................GCTACCTTTGAAGATGGCATGGTGGAAGAAGCCATAGCGAGAAATCTCAGCACAACACAGGAAGCTATTGAAGTAGGGGACGCTGCTGGAGCATATCGAATCATCCTCACTCATTTCAGTCAAAGATACCCTAAAATTCCAGTTTTTGACGAAACACACATGCACAAAACAAGCATTGCTTTTGATATGATGAGTGTTAACTTAGCAGACCTACCCATGCTTCCAAGAGTTCTTCCATATCTTAAACTGCTATTTCGTGATGAAATGATTGTTGATGAATCTGATAATGTAAATGTTGCCACAGCAGCAGCTATTTGAGTTACTGAATAACACACACTGTAAAATTTCTTTCTATTCATTTATACGCAGGAGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369142" ref_strand="+" ref_description="SGN-E369142 [TUS-23-O20](-)">
      <seq>aacttatttgctaaaggtagccgtatggagagttattgaaagaggccaggcagcccagctgatgcatctgcagcattcccagtgctggcaatgttgaagagaattctgagagaagcaggattggaagcactgatcagctttcctgttattcattgtccacaagcatatggtgttgtcctgaaggcggcggataggactaacagcactgggaaaaagataccggggtggaaaattgtttactctggcgacacgaggccttgtccagaactagttgcagcgtcccatggggccacagttcttattcatgaggctacctttgaagatggcatggtggaagaagccatagcgagaaatcacagcacaacacaggaagctattgaagtaggggacgctgctggagcatatcgaatcatcctcactcatttcagtcaaagataccctaaaattccagtttttgacgaaacacacatgcacaaaacaagcattgcttttgatatgatgagtgttaacttagcagacctacccatgcttccaagagttcttccatatcttaaactgctatttcgtgatgaaatgattgttgatgaatctgataatgtaaatgttgctacagcagcagctatttgagttactgaataacacacactgatcaatttctttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103935" stop="102495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103635" g_stop="103327" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103326" i_stop="103149" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103148" g_stop="102786" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="672" r_length="363" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E369142" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103635" e_stop="103327"/>
          <exon e_start="103148" e_stop="102786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTATTTGCTAAAGGTAGCCGTATGGAGAGTTATTGGAAGAGGCCAGGCAGCCCAGCTGATGCATCTGCAGCATTCCCAGTGCTGGCAATGTTGAAGAGAATTCTGAGAGAAGCAGGATTGGAAGCACTGATCAGCTTTCCTGTTATTCATTGTCCACAAGCATATGGTGTTGTCCTGAAGGCGGCGGATAGGACTAACAGCACTGGGAAAAAGATACCGGGGTGGAAAATTGTTTACTCTGGCGACACGAGGCCTTGTCCAGAACTAGTTGCAGCGTCCCATGGGGCCACAGTTCTTATTCATGAGGCAAGTTGTGAAATGTCTTTATGGTTTTCCCCCTATTTGATTACACAATAAATCCTTCCAAGTTTTCAATAGAATCTTACAACATGCTATACTCTTGGCTTAACAATTCTCATAAAAATTTCAGTTGCCACATGTTCCCCATTTTAGCATATATAAAATTTTCGGGGTTTTAATGCAGGCTACCTTTGAAGATGGCATGGTGGAAGAAGCCATAGCGAGAAATCACAGCACAACACAGGAAGCTATTGAAGTAGGGGACGCTGCTGGAGCATATCGAATCATCCTCACTCATTTCAGTCAAAGATACCCTAAAATTCCAGTTTTTGACGAAACACACATGCACAAAACAAGCATTGCTTTTGATATGATGAGTGTTAACTTAGCAGACCTACCCATGCTTCCAAGAGTTCTTCCATATCTTAAACTGCTATTTCGTGATGAAATGATTGTTGATGAATCTGATAATGTAAATGTTGCTACAGCAGCAGCTATTTGAGTTACTGAATAACACACACTGATCAATTTCTTTCTATTCATTTAT</genome_strand>
        <mrna_strand>AACTTATTTGCTAAAGGTAGCCGTATGGAGAGTTATTGAAAGAGGCCAGGCAGCCCAGCTGATGCATCTGCAGCATTCCCAGTGCTGGCAATGTTGAAGAGAATTCTGAGAGAAGCAGGATTGGAAGCACTGATCAGCTTTCCTGTTATTCATTGTCCACAAGCATATGGTGTTGTCCTGAAGGCGGCGGATAGGACTAACAGCACTGGGAAAAAGATACCGGGGTGGAAAATTGTTTACTCTGGCGACACGAGGCCTTGTCCAGAACTAGTTGCAGCGTCCCATGGGGCCACAGTTCTTATTCATGAG..................................................................................................................................................................................GCTACCTTTGAAGATGGCATGGTGGAAGAAGCCATAGCGAGAAATCACAGCACAACACAGGAAGCTATTGAAGTAGGGGACGCTGCTGGAGCATATCGAATCATCCTCACTCATTTCAGTCAAAGATACCCTAAAATTCCAGTTTTTGACGAAACACACATGCACAAAACAAGCATTGCTTTTGATATGATGAGTGTTAACTTAGCAGACCTACCCATGCTTCCAAGAGTTCTTCCATATCTTAAACTGCTATTTCGTGATGAAATGATTGTTGATGAATCTGATAATGTAAATGTTGCTACAGCAGCAGCTATTTGAGTTACTGAATAACACACACTGATCAATTTCTTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281082" ref_strand="+" ref_description="SGN-E281082 [cLER-7-K15]">
      <seq>tgcatttggatttctcatattcatgctgatcatcatactggtattgcaagaatacttgctctccgacgcgatttactttatgaaactcctcatgaacctttagttgttgtgggaccacgacagcttaagatattccttgatgcataccaaaagcttgaggacctagatatgcagttcctcgattgtaggcaaactacagaagcttcattgaggacttctgattcaggtgaaaacaaggatgctaatgggagtgtaggtgtacaaaatgaccaaaagaatggttctaacttatttgctaaaggtagccgtatggagagttattggaagaggccaggcagcccagctgatgcatctgcagcattcccagtgctggcaatgttgaagagaattctgagagaagcaggattggaagcactgatcagctttcctgttattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="104220" stop="103182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103920" g_stop="103482" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E281082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103920" e_stop="103482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTGGATTTCTCATATTCATGCTGATCATCATACTGGTATTGCAAGAATACTTGCTCTCCGACGCGATTTACTTTATGAAACTCCTCATGAACCTTTAGTTGTTGTGGGACCACGACAGCTTAAGATATTCCTTGATGCATACCAAAAGCTTGAGGACCTAGATATGCAGTTCCTCGATTGTAGGCAAACTACAGAAGCTTCATTGAGGACTTCTGATTCAGGTGAAAACAAGGATGCTAATGGGAGTGTAGGTGTACAAAATGACCAAAAGAATGGTTCTAACTTATTTGCTAAAGGTAGCCGTATGGAGAGTTATTGGAAGAGGCCAGGCAGCCCAGCTGATGCATCTGCAGCATTCCCAGTGCTGGCAATGTTGAAGAGAATTCTGAGAGAAGCAGGATTGGAAGCACTGATCAGCTTTCCTGTTATTCATT</genome_strand>
        <mrna_strand>TGCATTTGGATTTCTCATATTCATGCTGATCATCATACTGGTATTGCAAGAATACTTGCTCTCCGACGCGATTTACTTTATGAAACTCCTCATGAACCTTTAGTTGTTGTGGGACCACGACAGCTTAAGATATTCCTTGATGCATACCAAAAGCTTGAGGACCTAGATATGCAGTTCCTCGATTGTAGGCAAACTACAGAAGCTTCATTGAGGACTTCTGATTCAGGTGAAAACAAGGATGCTAATGGGAGTGTAGGTGTACAAAATGACCAAAAGAATGGTTCTAACTTATTTGCTAAAGGTAGCCGTATGGAGAGTTATTGGAAGAGGCCAGGCAGCCCAGCTGATGCATCTGCAGCATTCCCAGTGCTGGCAATGTTGAAGAGAATTCTGAGAGAAGCAGGATTGGAAGCACTGATCAGCTTTCCTGTTATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318359" ref_strand="+" ref_description="SGN-E318359 [cTOA-29-B15]">
      <seq>caactgttgcatcatggtaacaacattgcaaatggaggcagcacgacattgcaggccaacaatgttgtgatagaagagccctggttgcatgaaactgcattacctagttgtttggaaggtataacaagagaggatatggagattgttcttcttggaactggttcttcccagccttcaaaatatcgaaatgtcacttccatttttatcaatcttttctcaaagggaagtattctgttagattgtggtgaaggaacattgggacagctaaaaagaagatttggcattgaaggtgctgatgaagctgtaaaaggtctaaggtgcatttggatttctcatattcatgctgatcatcatactggtattgcaagaatacttgctctccgacgcgatttactttatgaaactcctcatgaacctttagttgttgtgggaccacgacagcttaagatattccttgatgcataccaaaagcttgaggacctagatatgcagttcctcgattgtaggcaaactacagaagcttcattgaggacttctgattcaggtgaaaacaaggatgctaatggggagtgtaggtgtacaaaatgaccaaaagaatggttctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="104624" stop="103332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104324" g_stop="104050" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104049" i_stop="103964" i_length="86">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103963" g_stop="103632" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="608" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E318359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104324" e_stop="104050"/>
          <exon e_start="103963" e_stop="103632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGTTGCATCATGGTAACAACATTGCAAATGGAGGCAGCACGACATTGCAGGCCAACAATGTTGTGATAGAAGAGCCCTGGTTGCATGAAACTGCATTACCTAGTTGTTTGGAAGGTATAACAAGAGAGGATATGGAGATTGTTCTTCTTGGAACTGGTTCTTCCCAGCCTTCAAAATATCGAAATGTCACTTCCATTTTTATCAATCTTTTCTCAAAGGGAAGTATTCTGTTAGATTGTGGTGAAGGAACATTGGGACAGCTAAAAAGAAGGTAATATATAAGCTCATTGATATCAATTTTACATATGGTTTTTGTCTAACCGCAGTTTGAGGGATAATGTGCTGCTTGGTAAACAGATTTGGCATTGAAGGTGCTGATGAAGCTGTAAAAGGTCTAAGGTGCATTTGGATTTCTCATATTCATGCTGATCATCATACTGGTATTGCAAGAATACTTGCTCTCCGACGCGATTTACTTTATGAAACTCCTCATGAACCTTTAGTTGTTGTGGGACCACGACAGCTTAAGATATTCCTTGATGCATACCAAAAGCTTGAGGACCTAGATATGCAGTTCCTCGATTGTAGGCAAACTACAGAAGCTTCATTGAGGACTTCTGATTCAGGTGAAAACAAGGATGCTAAT-GGGAGTGTAGGTGTACAAAATGACCAAAAGAATGGTTCTAACT</genome_strand>
        <mrna_strand>CAACTGTTGCATCATGGTAACAACATTGCAAATGGAGGCAGCACGACATTGCAGGCCAACAATGTTGTGATAGAAGAGCCCTGGTTGCATGAAACTGCATTACCTAGTTGTTTGGAAGGTATAACAAGAGAGGATATGGAGATTGTTCTTCTTGGAACTGGTTCTTCCCAGCCTTCAAAATATCGAAATGTCACTTCCATTTTTATCAATCTTTTCTCAAAGGGAAGTATTCTGTTAGATTGTGGTGAAGGAACATTGGGACAGCTAAAAAGAAG......................................................................................ATTTGGCATTGAAGGTGCTGATGAAGCTGTAAAAGGTCTAAGGTGCATTTGGATTTCTCATATTCATGCTGATCATCATACTGGTATTGCAAGAATACTTGCTCTCCGACGCGATTTACTTTATGAAACTCCTCATGAACCTTTAGTTGTTGTGGGACCACGACAGCTTAAGATATTCCTTGATGCATACCAAAAGCTTGAGGACCTAGATATGCAGTTCCTCGATTGTAGGCAAACTACAGAAGCTTCATTGAGGACTTCTGATTCAGGTGAAAACAAGGATGCTAATGGGGAGTGTAGGTGTACAAAATGACCAAAAGAATGGTTCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330273" ref_strand="+" ref_description="SGN-E330273 [cTOD-4-F1]">
      <seq>atcgccacaaggctgaactacttgtgccctcaattctttccttcgcctggctggtggtctcttcagcagctaaagagcttaccctcagtctctaagggtccaagtgagttctctcttccagcttcatgtcaagttattacggcagagaacctcctcaagttccatcttcgcccatatgcacagcttggtttagacagatctggtattcctgaaattacttctcggccaaaaatcatagaagacttaattacagaaattcctgaaattgtggatgcttctgagcatattacccaactgttgcatcatggtaacaacattgcaaatggaggcagcacgacattgcaggccaacaatgttgtgatagaagagccctggttgcatgaaactgcattacctagttgtttggaaggtataacaagagaggatatggagattgttcttcttggaactggttcttcccagccttcaaaatatcgaaatgtcacttccatttttatcaatcttttctcaaagggaagtattctgttagattgtggtgaaggaacattgggacagctaaaaagaagatttggcattgaaggtgctgatgaagctgtaaaaggtctaaggtgcatttggatttctcatattcatgctgatcatcatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105224" stop="103581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104924" g_stop="104817" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104816" i_stop="104706" i_length="111">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104705" g_stop="104655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="159" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104654" i_stop="104457" i_length="198">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104456" g_stop="104050" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="566" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104049" i_stop="103964" i_length="86">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103963" g_stop="103881" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="649" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E330273" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104924" e_stop="104817"/>
          <exon e_start="104705" e_stop="104655"/>
          <exon e_start="104456" e_stop="104050"/>
          <exon e_start="103963" e_stop="103881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCACAAGGCTGAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGTTTTTGGTCTCTTCAGCAGTTAAAGAGCTTACCCTCAGTCTCTAAGGGTCCAAGTGAGGTACATTATATTGGAATTATGCTTGAATGGAAGATAAGTTTACTTTGGACAGAGAATTAATATTGGGGATGCTTGTTTAATTGGTAAATTATCTTTATTTTGTTTCTGCAGTTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAGGTGAGAGTTTATATATTTGATCCGATCGCCTTATTGGGTAGAGTTAGAATCTAGAAACTGTATGCCAAGTTTGGTTTTGTTTGGTTCGGAATGTATTTGAGCTTTTCTGTGGAATTGACTGCAATTTACCTCATGCGTTGTTTGACTTTGATGCTGGGTTGGACATCACTCAAAATGAACTACTATTTTGTGGAACAGTTCCATCTTCGCCCATATGCACAGCTTGGTTTAGACAGATCTGGTATTCCTGAAATTACTTCTCGGCCAAAAATCATAGAAGACTTAATTACAGAAATTCCTGAAATTGTGGATGCTTCTGAGCATATTACCCAACTGTTGCATCATGGTAACAACATTGCAAATGGAGGCAGCACGACATTGCAGGCCAACAATGTTGTGATAGAAGAGCCCTGGTTGCATGAAACTGCATTACCTAGTTGTTTGGAAGGTATAACAAGAGAGGATATGGAGATTGTTCTTCTTGGAACTGGTTCTTCCCAGCCTTCAAAATATCGAAATGTCACTTCCATTTTTATCAATCTTTTCTCAAAGGGAAGTATTCTGTTAGATTGTGGTGAAGGAACATTGGGACAGCTAAAAAGAAGGTAATATATAAGCTCATTGATATCAATTTTACATATGGTTTTTGTCTAACCGCAGTTTGAGGGATAATGTGCTGCTTGGTAAACAGATTTGGCATTGAAGGTGCTGATGAAGCTGTAAAAGGTCTAAGGTGCATTTGGATTTCTCATATTCATGCTGATCATCATACTG</genome_strand>
        <mrna_strand>ATCGCCACAAGGCTGAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGCTGGTGGTCTCTTCAGCAGCTAAAGAGCTTACCCTCAGTCTCTAAGGGTCCAAGTGAG...............................................................................................................TTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAG......................................................................................................................................................................................................TTCCATCTTCGCCCATATGCACAGCTTGGTTTAGACAGATCTGGTATTCCTGAAATTACTTCTCGGCCAAAAATCATAGAAGACTTAATTACAGAAATTCCTGAAATTGTGGATGCTTCTGAGCATATTACCCAACTGTTGCATCATGGTAACAACATTGCAAATGGAGGCAGCACGACATTGCAGGCCAACAATGTTGTGATAGAAGAGCCCTGGTTGCATGAAACTGCATTACCTAGTTGTTTGGAAGGTATAACAAGAGAGGATATGGAGATTGTTCTTCTTGGAACTGGTTCTTCCCAGCCTTCAAAATATCGAAATGTCACTTCCATTTTTATCAATCTTTTCTCAAAGGGAAGTATTCTGTTAGATTGTGGTGAAGGAACATTGGGACAGCTAAAAAGAAG......................................................................................ATTTGGCATTGAAGGTGCTGATGAAGCTGTAAAAGGTCTAAGGTGCATTTGGATTTCTCATATTCATGCTGATCATCATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437734" ref_strand="+" ref_description="SGN-E437734 [cSTA-4-J2]">
      <seq>caagaattgtcttctatacattctctcactccatattactcagatccatccgaacaatccaaggaaatgtgcaaaaaagttgattgtgtgatacaccttagtcctgcttcagtaacgtgtacaactgaatatcagcaatggatgtcaagatttggtgaggtgcagcacgtcatggcaggacatcagctgaagaatgttgaaattccaattctgaagtctagtgcaagaatcgccacaaggcttaactacttgtgccctcaattctttccttcgcctggtttttggtctcttccacagttgaagagcttaccctcagtctctagaggtccaagtgagttctctcttccagcttcatgtcaagttattacggcagagaacctcctcaagttccatcttcgcccatatgcacagcttggtttagacagatctggtattcctgaagttacttctcggccaaaaatcatagaagacttaattacagaaattcctgaaattgtggatgcttctgagcatattacccaactgttacatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105561" stop="104010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105261" g_stop="105074" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105073" i_stop="104965" i_length="109">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104964" g_stop="104817" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="336" r_length="148" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104816" i_stop="104706" i_length="111">
            <donor d_prob="0.878" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104705" g_stop="104655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="387" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104654" i_stop="104457" i_length="198">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104456" g_stop="104310" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="534" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E437734" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105261" e_stop="105074"/>
          <exon e_start="104964" e_stop="104817"/>
          <exon e_start="104705" e_stop="104655"/>
          <exon e_start="104456" e_stop="104310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATTGTCGTCTATACATTCTCTCACTCCGTATTACTCAGATCCATCCAAACAATCCAAGGAAATGTGCAAAGAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCAAGATTTGGTGAGGTGCAGCACGTCATGGCAGGACATCAGCTGTGAGTAACCTTAGAATGCTCTCTTCTTTTAAGGCTGATATACATCTTTCTGCTGTTTACATGTATTTCCTGCTTATGTATCAGCATGATTTTCTTGTACAAATCGCAGGAAGAATGTTGAGATTCCAATTCTGAAGTCTAGTGCAAGAATCGCCACAAGGCTGAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGTTTTTGGTCTCTTCAGCAGTTAAAGAGCTTACCCTCAGTCTCTAAGGGTCCAAGTGAGGTACATTATATTGGAATTATGCTTGAATGGAAGATAAGTTTACTTTGGACAGAGAATTAATATTGGGGATGCTTGTTTAATTGGTAAATTATCTTTATTTTGTTTCTGCAGTTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAGGTGAGAGTTTATATATTTGATCCGATCGCCTTATTGGGTAGAGTTAGAATCTAGAAACTGTATGCCAAGTTTGGTTTTGTTTGGTTCGGAATGTATTTGAGCTTTTCTGTGGAATTGACTGCAATTTACCTCATGCGTTGTTTGACTTTGATGCTGGGTTGGACATCACTCAAAATGAACTACTATTTTGTGGAACAGTTCCATCTTCGCCCATATGCACAGCTTGGTTTAGACAGATCTGGTATTCCTGAAATTACTTCTCGGCCAAAAATCATAGAAGACTTAATTACAGAAATTCCTGAAATTGTGGATGCTTCTGAGCATATTACCCAACTGTTGCATCAT</genome_strand>
        <mrna_strand>CAAGAATTGTCTTCTATACATTCTCTCACTCCATATTACTCAGATCCATCCGAACAATCCAAGGAAATGTGCAAAAAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCAAGATTTGGTGAGGTGCAGCACGTCATGGCAGGACATCAGCT.............................................................................................................GAAGAATGTTGAAATTCCAATTCTGAAGTCTAGTGCAAGAATCGCCACAAGGCTTAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGTTTTTGGTCTCTTCCACAGTTGAAGAGCTTACCCTCAGTCTCTAGAGGTCCAAGTGAG...............................................................................................................TTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAG......................................................................................................................................................................................................TTCCATCTTCGCCCATATGCACAGCTTGGTTTAGACAGATCTGGTATTCCTGAAGTTACTTCTCGGCCAAAAATCATAGAAGACTTAATTACAGAAATTCCTGAAATTGTGGATGCTTCTGAGCATATTACCCAACTGTTACATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484391" ref_strand="+" ref_description="SGN-E484391 [cSTE-13-M17]">
      <seq>tggtgatgtattggggccttctgttcctggtcctattgtactcgttgttgactgcccaacaccatctcatatgcaagaattgtcttctatacattctctcactccatattactcagatccatccgaacaatccaaggaaatgtgcaaaaaagttgattgtgtgatacaccttaatcctgcttcagtaacgtgtacaactgaatatcatcaatggatgtcaagatttggtgaggtgcagcacgtcatggcaggacatcatctgaagaatgtcgaaattccaattctgaagactagtgcaagaatcgccacaaggcttaactacttgtgccctcaatcctttccttcgcctgggctctggtctcttccacagttgaagagcttaccctcagtctctagacgtccaagtgagttctctcttacagctacatgtcaagttattacggcagagaacctcctcaagttccatcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105634" stop="104353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105334" g_stop="105074" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105073" i_stop="104965" i_length="109">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104964" g_stop="104817" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="409" r_length="148" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104816" i_stop="104706" i_length="111">
            <donor d_prob="0.878" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104705" g_stop="104655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="460" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104654" i_stop="104457" i_length="198">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104456" g_stop="104446" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="471" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E484391" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105334" e_stop="105074"/>
          <exon e_start="104964" e_stop="104817"/>
          <exon e_start="104705" e_stop="104655"/>
          <exon e_start="104456" e_stop="104446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGATGTATTGGGGCCTTCTGTTCCTGGTCCTATTGTACTCGTTGTTGACTGCCCAACACCGTCTCATCTGCAAGAATTGTCGTCTATACATTCTCTCACTCCGTATTACTCAGATCCATCCAAACAATCCAAGGAAATGTGCAAAGAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCAAGATTTGGTGAGGTGCAGCACGTCATGGCAGGACATCAGCTGTGAGTAACCTTAGAATGCTCTCTTCTTTTAAGGCTGATATACATCTTTCTGCTGTTTACATGTATTTCCTGCTTATGTATCAGCATGATTTTCTTGTACAAATCGCAGGAAGAATGTTGAGATTCCAATTCTGAAGTCTAGTGCAAGAATCGCCACAAGGCTGAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGTTTTTGGTCTCTTCAGCAGTTAAAGAGCTTACCCTCAGTCTCTAAGGGTCCAAGTGAGGTACATTATATTGGAATTATGCTTGAATGGAAGATAAGTTTACTTTGGACAGAGAATTAATATTGGGGATGCTTGTTTAATTGGTAAATTATCTTTATTTTGTTTCTGCAGTTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAGGTGAGAGTTTATATATTTGATCCGATCGCCTTATTGGGTAGAGTTAGAATCTAGAAACTGTATGCCAAGTTTGGTTTTGTTTGGTTCGGAATGTATTTGAGCTTTTCTGTGGAATTGACTGCAATTTACCTCATGCGTTGTTTGACTTTGATGCTGGGTTGGACATCACTCAAAATGAACTACTATTTTGTGGAACAGTTCCATCTTCG</genome_strand>
        <mrna_strand>TGGTGATGTATTGGGGCCTTCTGTTCCTGGTCCTATTGTACTCGTTGTTGACTGCCCAACACCATCTCATATGCAAGAATTGTCTTCTATACATTCTCTCACTCCATATTACTCAGATCCATCCGAACAATCCAAGGAAATGTGCAAAAAAGTTGATTGTGTGATACACCTTAATCCTGCTTCAGTAACGTGTACAACTGAATATCATCAATGGATGTCAAGATTTGGTGAGGTGCAGCACGTCATGGCAGGACATCATCT.............................................................................................................GAAGAATGTCGAAATTCCAATTCTGAAGACTAGTGCAAGAATCGCCACAAGGCTTAACTACTTGTGCCCTCAATCCTTTCCTTCGCCTGGGCTCTGGTCTCTTCCACAGTTGAAGAGCTTACCCTCAGTCTCTAGACGTCCAAGTGAG...............................................................................................................TTCTCTCTTACAGCTACATGTCAAGTTATTACGGCAGAGAACCTCCTCAAG......................................................................................................................................................................................................TTCCATCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314309" ref_strand="+" ref_description="SGN-E314309 [cTOA-21-I20]">
      <seq>caaaatgccgtgaattgcaactcgggaattctgtacagtcagatcatcaagacatcatggttcaccctagtgatgtattggggccttctgttcctggtcctattgtactcgttgttgactgcccaacaccgtctcatctgcaagaattgtcgtctatacattctctcactccgtattactcagatccatccaaacaatccaaggaaatgtgcaaagaagttgattgtgtgatacaccttagtcctgcttcagtaacgtgtacaactgaatatcagcaatggatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="105774" stop="104815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105474" g_stop="105416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105415" i_stop="105343" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105342" g_stop="105115" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="287" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E314309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105474" e_stop="105416"/>
          <exon e_start="105342" e_stop="105115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGCCGTGAATTGCAACTCGGGAATTCTGTACAGTCAGATCATCAAGACATCATGGTAAGAATAGGGATTATTATTTGCTGTTACTTCACTTTGTACTCATCTCATTATTTCAGTGAGCATTGTGCAGGTTCACCCTAGTGATGTATTGGGGCCTTCTGTTCCTGGTCCTATTGTACTCGTTGTTGACTGCCCAACACCGTCTCATCTGCAAGAATTGTCGTCTATACATTCTCTCACTCCGTATTACTCAGATCCATCCAAACAATCCAAGGAAATGTGCAAAGAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCA</genome_strand>
        <mrna_strand>CAAAATGCCGTGAATTGCAACTCGGGAATTCTGTACAGTCAGATCATCAAGACATCATG.........................................................................GTTCACCCTAGTGATGTATTGGGGCCTTCTGTTCCTGGTCCTATTGTACTCGTTGTTGACTGCCCAACACCGTCTCATCTGCAAGAATTGTCGTCTATACATTCTCTCACTCCGTATTACTCAGATCCATCCAAACAATCCAAGGAAATGTGCAAAGAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369143" ref_strand="+" ref_description="SGN-E369143 [TUS-23-O20]">
      <seq>tacaacaccctcagtccttctcttctttgataaacagaggtttatttttaatgctggagaaggattgcaacgcttctgcacagagcataaaattaagctatcaaagattgatcacatatttctgtcgcgagtctgttcagaaactgccggtggactcccaggtcttttattgactttggctggcatgggagaagaaggaatgtctgtcaatgtatggggtccttctgatctcaagtacttggtcaatgcaatgaaatcattcatcccaaatgccgccatggtccatgcacgtagttttggcccacctattgattcttcgggggctactgatgaactctttgttcctattaacgatgaggttgtcaaaatatctgctgttctgttgcgaccacgttactcaaaagtgtctaagacgacaaaggcaggatcctctgaacttgatgattcactagttggtgaaaatctttcagcagagaggatgcagtccacagctgaatttgcattgaagcctggggatcttgctgtagtgtatatctgtgagttgcctgaaattaagggaaagtttgatcccaaaaaggctgctgctcttgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107523" stop="105185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107223" g_stop="107163" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107162" i_stop="106384" i_length="779">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106383" g_stop="106339" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="106" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106338" i_stop="106205" i_length="134">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106204" g_stop="106150" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="161" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106149" i_stop="106023" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106022" g_stop="105979" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="205" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105978" i_stop="105875" i_length="104">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105874" g_stop="105485" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="595" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E369143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107223" e_stop="107163"/>
          <exon e_start="106383" e_stop="106339"/>
          <exon e_start="106204" e_stop="106150"/>
          <exon e_start="106022" e_stop="105979"/>
          <exon e_start="105874" e_stop="105485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAAGTAAGTATGTTATATTGTCGAGTTCAAATCCAATGTGTATGCCATTTGGTTCCTCTACTGTTTCAGATGACACCAACAGGATAATTTGATCCTATTTGGGTGTTGTGTTTTTAGTCAAGATGTACATTTCATATTTTGGAACAGCCTCTCTACCCCACAAAGGTAGAGATAAGATCTGCGTATATCTTTCCCTCCCAAAACCCAAATTGTGGCCCTCGACAGACCCAACTTGTGGGATTACTGGGTATGTTGTTATAATGGCATTGAAACCTTAGGGCCTTTGTCTTATAGGAAGCAGAATACCTACCTGAATCTGAAAGTGGAGCTACTTATTAAGTTAATTTAATTCTTGCAAGGGTTCCTTGAGTTTTTGTAATTCTATTATTCTCATGACTAAATTACTGCATGGATATGATCCATAGGGACCAACTGGCTATTAGATTTTGTACAGGAAGAGATGATAAGACCACATGCAGCATATTTCAAGTTATGATGAATAGCAACTCATACTTTTTGTCTGGTATTAAGAATGTTTTTGGTTAAGTGTCTTTGACAAATTTCTAATGAGGAACTGTGCTTTTTAATGATGGTTAATTGGTCATCTACTTCCTGCATCACCATTATCCTAGTGGGTTTTCTTTCCACAATGTTGTTCTGCAGATTGTTTCCCATTCATATGCATTTATTGCTCTCTTTTGGTTCTTATTTCCTTTGTGATGAAACAGAAAAAATACAGTAAGACGTATTTCTTTGTATCTAAATCCGTTCTTCTGCTTCAGGGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAGGTATGGAACTATGGATATGTATAAACCGTTTGTTCGTAATCAGGTTTATAGTTCTGAACTGTTCTTTCAAGTATGATGTTGATCTTATTGTGGAAGATGTATATACATTTTTTTTCTTCGTTCTTCTTTCCCAGATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAGGTCTGTTTCTATAGCTTTTCTTATGGGTGACTAGATTAATCAATGCTGGAAAGATACAAGTGCTGGCTTAACGATTGCCAGAGGTTGTTTAAGAACCACTAAATATGTTAAATTCTTTTGCTTGCAGGTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCTGTGAGTGTCAGATTAACTTGGTTTACTTGTATAATATCGATCAGATAATTGGCTGATGTAAATGATCTTAACAAAATGATACTGATTACAATTTTATTTTGAAGGTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGGTCAATGCAATGAAATCATTCATCCCAAATGCCGCCATGGTCCATGCACGTAGTTTTGGCCCACCTATTGATTCTTCGGGGGCTACTGATGAACTCTTTGTTCCTATTAACGATGAGGTTGTCAAAATATCTGCTGTTCTGTTGCGACCACGTTACTCAAAAGTGTCTAAGACGACAAAGGCAGGATCCTCTGAACTTGATGATTCACTAGTTGGTGAAAATCTTTCAGCAGAGAGGATGCAGTCCACAGCTGAATTTGCATTGAAGCCTGGGGATCTTGCTGTAGTGTATATCTGTGAGTTGCCTGAAATTAAGGGAAAGTTTGATCCCAAAAAGGCTGCTGCTCTTGGGTTG</genome_strand>
        <mrna_strand>TACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAG......................................................................................................................................ATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAG...............................................................................................................................GTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCT........................................................................................................GTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGGTCAATGCAATGAAATCATTCATCCCAAATGCCGCCATGGTCCATGCACGTAGTTTTGGCCCACCTATTGATTCTTCGGGGGCTACTGATGAACTCTTTGTTCCTATTAACGATGAGGTTGTCAAAATATCTGCTGTTCTGTTGCGACCACGTTACTCAAAAGTGTCTAAGACGACAAAGGCAGGATCCTCTGAACTTGATGATTCACTAGTTGGTGAAAATCTTTCAGCAGAGAGGATGCAGTCCACAGCTGAATTTGCATTGAAGCCTGGGGATCTTGCTGTAGTGTATATCTGTGAGTTGCCTGAAATTAAGGGAAAGTTTGATCCCAAAAAGGCTGCTGCTCTTGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246855" ref_strand="+" ref_description="SGN-E246855 [cLEF-41-G18]">
      <seq>tacaacaccctcagtccttctcttctttgataaacagaggtgtatttttaatgctggagaaggattgcaacgcttctgcacagagcataaaattaagctatcaaagattgatcacatatttctgtcgcgagtctgttcagaaactgccggtggactcccaggtcttttattgactttggctggcatgggagaagaaggaatgtctgtcaatgtatggggtccttctgatctcaagtacttggtcaatgcaatgaaatcattcatcccaaatgccgccatggtccatgcacgtagttttggcccacctattgattcttcgggggctactgatgaactctttgttcctattaacgatgaggttgtcaaaatatctgctgttctgttgcgaccacgttactcaaaagtgtctaagacgacaaaggcaggatcctctgaacttgatgattcactagttggtgaaaatctttcagcagagaggatgcaatccacagctgaatttgcattgaagcctggggatcttgctgtagtgtatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="107523" stop="105244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107223" g_stop="107163" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107162" i_stop="106384" i_length="779">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106383" g_stop="106339" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="106" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106338" i_stop="106205" i_length="134">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106204" g_stop="106150" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="161" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106149" i_stop="106023" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106022" g_stop="105979" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="205" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105978" i_stop="105875" i_length="104">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105874" g_stop="105544" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="536" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E246855" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107223" e_stop="107163"/>
          <exon e_start="106383" e_stop="106339"/>
          <exon e_start="106204" e_stop="106150"/>
          <exon e_start="106022" e_stop="105979"/>
          <exon e_start="105874" e_stop="105544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAAGTAAGTATGTTATATTGTCGAGTTCAAATCCAATGTGTATGCCATTTGGTTCCTCTACTGTTTCAGATGACACCAACAGGATAATTTGATCCTATTTGGGTGTTGTGTTTTTAGTCAAGATGTACATTTCATATTTTGGAACAGCCTCTCTACCCCACAAAGGTAGAGATAAGATCTGCGTATATCTTTCCCTCCCAAAACCCAAATTGTGGCCCTCGACAGACCCAACTTGTGGGATTACTGGGTATGTTGTTATAATGGCATTGAAACCTTAGGGCCTTTGTCTTATAGGAAGCAGAATACCTACCTGAATCTGAAAGTGGAGCTACTTATTAAGTTAATTTAATTCTTGCAAGGGTTCCTTGAGTTTTTGTAATTCTATTATTCTCATGACTAAATTACTGCATGGATATGATCCATAGGGACCAACTGGCTATTAGATTTTGTACAGGAAGAGATGATAAGACCACATGCAGCATATTTCAAGTTATGATGAATAGCAACTCATACTTTTTGTCTGGTATTAAGAATGTTTTTGGTTAAGTGTCTTTGACAAATTTCTAATGAGGAACTGTGCTTTTTAATGATGGTTAATTGGTCATCTACTTCCTGCATCACCATTATCCTAGTGGGTTTTCTTTCCACAATGTTGTTCTGCAGATTGTTTCCCATTCATATGCATTTATTGCTCTCTTTTGGTTCTTATTTCCTTTGTGATGAAACAGAAAAAATACAGTAAGACGTATTTCTTTGTATCTAAATCCGTTCTTCTGCTTCAGGGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAGGTATGGAACTATGGATATGTATAAACCGTTTGTTCGTAATCAGGTTTATAGTTCTGAACTGTTCTTTCAAGTATGATGTTGATCTTATTGTGGAAGATGTATATACATTTTTTTTCTTCGTTCTTCTTTCCCAGATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAGGTCTGTTTCTATAGCTTTTCTTATGGGTGACTAGATTAATCAATGCTGGAAAGATACAAGTGCTGGCTTAACGATTGCCAGAGGTTGTTTAAGAACCACTAAATATGTTAAATTCTTTTGCTTGCAGGTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCTGTGAGTGTCAGATTAACTTGGTTTACTTGTATAATATCGATCAGATAATTGGCTGATGTAAATGATCTTAACAAAATGATACTGATTACAATTTTATTTTGAAGGTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGGTCAATGCAATGAAATCATTCATCCCAAATGCCGCCATGGTCCATGCACGTAGTTTTGGCCCACCTATTGATTCTTCGGGGGCTACTGATGAACTCTTTGTTCCTATTAACGATGAGGTTGTCAAAATATCTGCTGTTCTGTTGCGACCACGTTACTCAAAAGTGTCTAAGACGACAAAGGCAGGATCCTCTGAACTTGATGATTCACTAGTTGGTGAAAATCTTTCAGCAGAGAGGATGCAGTCCACAGCTGAATTTGCATTGAAGCCTGGGGATCTTGCTGTAGTGTATATCT</genome_strand>
        <mrna_strand>TACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTGTATTTTTAATGCTGGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAG......................................................................................................................................ATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAG...............................................................................................................................GTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCT........................................................................................................GTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGGTCAATGCAATGAAATCATTCATCCCAAATGCCGCCATGGTCCATGCACGTAGTTTTGGCCCACCTATTGATTCTTCGGGGGCTACTGATGAACTCTTTGTTCCTATTAACGATGAGGTTGTCAAAATATCTGCTGTTCTGTTGCGACCACGTTACTCAAAAGTGTCTAAGACGACAAAGGCAGGATCCTCTGAACTTGATGATTCACTAGTTGGTGAAAATCTTTCAGCAGAGAGGATGCAATCCACAGCTGAATTTGCATTGAAGCCTGGGGATCTTGCTGTAGTGTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739640" ref_strand="+" ref_description="SGN-E739640 [LC18BB01]">
      <seq>ccctactcaacctgataacatgcaatggcaagtgcaaaatctttcagacatgggcggggttttatgtttgtgaacctaaaaccctgtgtgtgtacaaataaaatgccccaaatctcaagcctacgccgcttgttctcctccgccaatcaccacgcacttctcacttcccctttaaccccaaaacctccgctttccctttctcatctcttcaaaatcaaacaacccccatttctccatacccacactcacaagccctgtcgtcttctcttcgccgcatattcaagaaaaaccaaaaatatcgaacgacccggttcgttgagcggttcaagaaggcgtagtagtagcagtagttcaaataaggagaataaagggaagtcggtaatggaagaaagtagtagtagtagtgcgattgctgagtctgttgggtttaataaaagaagggctgaaggtaaagataagaatgatggtcccaggaaaaaccttcaactcaaagttcgcaaactcaaccctgttaatactatttcatacgtccagatccttgggactggcatggatacacaagatacaacaccctcagtccttctcttctttgataaacagaggtttatttttaatgctggagaaggattgcaacgcttctgcacagagcataaaattaagctatcaaagattgatcacatatttctgtcgcgagtctgttcagaaactgccggtggactcccaggtcttttattgactttggctggcatgggagaagaaggaatgtctgtcaatgtatggggtccttctgatctcaagtacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109203" stop="105538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108903" g_stop="108370" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108369" i_stop="107253" i_length="1117">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107252" g_stop="107163" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="624" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107162" i_stop="106384" i_length="779">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106383" g_stop="106339" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="669" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106338" i_stop="106205" i_length="134">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106204" g_stop="106150" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="724" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106149" i_stop="106023" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106022" g_stop="105979" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="768" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105978" i_stop="105875" i_length="104">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105874" g_stop="105838" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="805" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E739640" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108903" e_stop="108370"/>
          <exon e_start="107252" e_stop="107163"/>
          <exon e_start="106383" e_stop="106339"/>
          <exon e_start="106204" e_stop="106150"/>
          <exon e_start="106022" e_stop="105979"/>
          <exon e_start="105874" e_stop="105838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTCAACCTGATAACATGCAATGGCAAGTGCAAAATCTTTCAGACATGGGCGGGGTTTTATGTTTGTGAACCTAAAACCCTGTGTGTGTACAAATAAAATGCCCCAAATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAGGTACTAAATTAGTAGTTGTTAATAAGTTTCCCCTTTTAATAAAGAAAGCATTTTTATTGAAGCTAACGAGAAAGGAATGTAAGACAAACTGTGTTAGTTGTTTGTTATGATCCTGGTTTGTTATGTGGTTGAATGAAGATGGTTTCCACGTTTGTTCTCGATGACGTAATGATGTATACTATTGCTGGCATTGAAGAAGATGCAGAAAAAAAATACAAAATGGTAGAAATGAAAAAACTTTGGTAGTTACGTTCCATAAGAACACTATGCTAGTGTCAGAGAGCTAACTAAGTTCAAAAAGATTTATAGTTCCCATGTTTATTTGGACGCGAAGTTGGTCCATGCAGTTATTGTGTAGGTCTAGTGAGTGGGTCGCAGGTGGATTGTTTTTACTGATATCTGATGTCGATAGGGAGGAAAAAATTATGTTTGTATGTTTTGAGGGAGCAAATGCTATGGATAGAGTTATAGGGTATGTTGGTGAGGAAAGTGTTTGATTTGGAACTTTTTCTGAATCATTTCTAGTTTTAGTTGGGTTTAAAAATTGATGACATGTGTAGTCCGGTAGGATAAGACAAGAGGATAGTGTTTTGGCAACTATAAGTGTAGTTTGAAGCAAGTGATATGGAGTAGGAGTGAGGACATTGATTGAAAATGGCTTCTTTTCTATGGGAAGTATTTTTCTTCAAGATTACATTTTTTAACACCTAAATATGTTTTCTTCAAGTAAAACATTTTTAGCAGAGGGATTCCAGTTCAATATTAAAACAAACAGTATAACACACTAACAGAATTCAGCATGGTGGTTATGTAATGTTAGTCCTAGAAAGTAACATAACATGAACTAGCAGCCCCAGTAAGGTCCTACCCCTATTTATAATTTTTTTTTGGGGTATATTTAAGGCAGATTTGACAATTTATTTTTGCATGAAGGGACTCTAAAGTTCCTATGATTATGGTCATATACTTGAACGCGCAAAGGTTTTGTCTGGTTGGATTGGAATCTTATTTCCCAAATTTATGATTATGTGAATCTAATAACTGATATTGTTCCTCTCTCACTTCCTCGCGAAGAAATTGAAAAGTCATTGACTTCTCTTCCTTTAAATTCTCACAGATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAAGTAAGTATGTTATATTGTCGAGTTCAAATCCAATGTGTATGCCATTTGGTTCCTCTACTGTTTCAGATGACACCAACAGGATAATTTGATCCTATTTGGGTGTTGTGTTTTTAGTCAAGATGTACATTTCATATTTTGGAACAGCCTCTCTACCCCACAAAGGTAGAGATAAGATCTGCGTATATCTTTCCCTCCCAAAACCCAAATTGTGGCCCTCGACAGACCCAACTTGTGGGATTACTGGGTATGTTGTTATAATGGCATTGAAACCTTAGGGCCTTTGTCTTATAGGAAGCAGAATACCTACCTGAATCTGAAAGTGGAGCTACTTATTAAGTTAATTTAATTCTTGCAAGGGTTCCTTGAGTTTTTGTAATTCTATTATTCTCATGACTAAATTACTGCATGGATATGATCCATAGGGACCAACTGGCTATTAGATTTTGTACAGGAAGAGATGATAAGACCACATGCAGCATATTTCAAGTTATGATGAATAGCAACTCATACTTTTTGTCTGGTATTAAGAATGTTTTTGGTTAAGTGTCTTTGACAAATTTCTAATGAGGAACTGTGCTTTTTAATGATGGTTAATTGGTCATCTACTTCCTGCATCACCATTATCCTAGTGGGTTTTCTTTCCACAATGTTGTTCTGCAGATTGTTTCCCATTCATATGCATTTATTGCTCTCTTTTGGTTCTTATTTCCTTTGTGATGAAACAGAAAAAATACAGTAAGACGTATTTCTTTGTATCTAAATCCGTTCTTCTGCTTCAGGGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAGGTATGGAACTATGGATATGTATAAACCGTTTGTTCGTAATCAGGTTTATAGTTCTGAACTGTTCTTTCAAGTATGATGTTGATCTTATTGTGGAAGATGTATATACATTTTTTTTCTTCGTTCTTCTTTCCCAGATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAGGTCTGTTTCTATAGCTTTTCTTATGGGTGACTAGATTAATCAATGCTGGAAAGATACAAGTGCTGGCTTAACGATTGCCAGAGGTTGTTTAAGAACCACTAAATATGTTAAATTCTTTTGCTTGCAGGTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCTGTGAGTGTCAGATTAACTTGGTTTACTTGTATAATATCGATCAGATAATTGGCTGATGTAAATGATCTTAACAAAATGATACTGATTACAATTTTATTTTGAAGGTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGG</genome_strand>
        <mrna_strand>CCCTACTCAACCTGATAACATGCAATGGCAAGTGCAAAATCTTTCAGACATGGGCGGGGTTTTATGTTTGTGAACCTAAAACCCTGTGTGTGTACAAATAAAATGCCCCAAATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAG......................................................................................................................................ATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAG...............................................................................................................................GTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCT........................................................................................................GTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737714" ref_strand="+" ref_description="SGN-E737714 [LC10DH05]">
      <seq>attcggcacgaggcccaactcaacctgataacatgcaatggcaagtgcaaaatctttcagacatgggcggggttttatgtttgtgaacctaaaaccctgtgtgtgtacaaataaaatgccccaaatctcaagcctacgccgcttgttctcctccgccaatcaccacgcacttctcacttcccctttaaccccaaaacctccgctttccctttctcatctcttcaaaatcaaacaacccccatttctccatacccacactcacaagccctgtcgtcttctcttcgccgcatattcaagaaaaaccaaaaatatcgaacgacccggttcgttgagcggttcaagaaggcgtagtagtagcagtagttcaaataaggagaataaagggaagtcggtaatggaagaaagtagtagtagtagtgcgattgctgagtctgttgggtttaataaaagaagggctgaaggtaaagataagaatgatggtcccaggaaaaaccttcaactcaaagttcgcaaactcaaccctgttaatactatttcatacgtccagatccttgggactggcatggatacacaagatacaacaccctcagtccttctcttctttgataaacagaggtttatttttaatgctggagaaggattgcaacgcttctgcacagagcataaaattaagctatcaaagattgatcacatatttctgtcgcgagtctgttcagaaactgccggtggactcccaggtcttttattgactttggctggcatgggagaaaaaggaatgtctgtcaatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109209" stop="105667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108916" g_stop="108370" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108369" i_stop="107253" i_length="1117">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107252" g_stop="107163" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="637" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107162" i_stop="106384" i_length="779">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106383" g_stop="106339" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="682" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106338" i_stop="106205" i_length="134">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106204" g_stop="106150" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="737" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106149" i_stop="106023" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106022" g_stop="105979" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="781" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105978" i_stop="105875" i_length="104">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105874" g_stop="105864" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="792" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E737714" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108916" e_stop="108370"/>
          <exon e_start="107252" e_stop="107163"/>
          <exon e_start="106383" e_stop="106339"/>
          <exon e_start="106204" e_stop="106150"/>
          <exon e_start="106022" e_stop="105979"/>
          <exon e_start="105874" e_stop="105864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGACCTGACCCAACTCAACCTGATAACATGCAATGGCAAGTGCAAAATCTTTCAGACATGGGCGGGGTTTTATGTTTGTGAACCTAAAACCCTGTGTGTGTACAAATAAAATGCCCCAAATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAGGTACTAAATTAGTAGTTGTTAATAAGTTTCCCCTTTTAATAAAGAAAGCATTTTTATTGAAGCTAACGAGAAAGGAATGTAAGACAAACTGTGTTAGTTGTTTGTTATGATCCTGGTTTGTTATGTGGTTGAATGAAGATGGTTTCCACGTTTGTTCTCGATGACGTAATGATGTATACTATTGCTGGCATTGAAGAAGATGCAGAAAAAAAATACAAAATGGTAGAAATGAAAAAACTTTGGTAGTTACGTTCCATAAGAACACTATGCTAGTGTCAGAGAGCTAACTAAGTTCAAAAAGATTTATAGTTCCCATGTTTATTTGGACGCGAAGTTGGTCCATGCAGTTATTGTGTAGGTCTAGTGAGTGGGTCGCAGGTGGATTGTTTTTACTGATATCTGATGTCGATAGGGAGGAAAAAATTATGTTTGTATGTTTTGAGGGAGCAAATGCTATGGATAGAGTTATAGGGTATGTTGGTGAGGAAAGTGTTTGATTTGGAACTTTTTCTGAATCATTTCTAGTTTTAGTTGGGTTTAAAAATTGATGACATGTGTAGTCCGGTAGGATAAGACAAGAGGATAGTGTTTTGGCAACTATAAGTGTAGTTTGAAGCAAGTGATATGGAGTAGGAGTGAGGACATTGATTGAAAATGGCTTCTTTTCTATGGGAAGTATTTTTCTTCAAGATTACATTTTTTAACACCTAAATATGTTTTCTTCAAGTAAAACATTTTTAGCAGAGGGATTCCAGTTCAATATTAAAACAAACAGTATAACACACTAACAGAATTCAGCATGGTGGTTATGTAATGTTAGTCCTAGAAAGTAACATAACATGAACTAGCAGCCCCAGTAAGGTCCTACCCCTATTTATAATTTTTTTTTGGGGTATATTTAAGGCAGATTTGACAATTTATTTTTGCATGAAGGGACTCTAAAGTTCCTATGATTATGGTCATATACTTGAACGCGCAAAGGTTTTGTCTGGTTGGATTGGAATCTTATTTCCCAAATTTATGATTATGTGAATCTAATAACTGATATTGTTCCTCTCTCACTTCCTCGCGAAGAAATTGAAAAGTCATTGACTTCTCTTCCTTTAAATTCTCACAGATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAAGTAAGTATGTTATATTGTCGAGTTCAAATCCAATGTGTATGCCATTTGGTTCCTCTACTGTTTCAGATGACACCAACAGGATAATTTGATCCTATTTGGGTGTTGTGTTTTTAGTCAAGATGTACATTTCATATTTTGGAACAGCCTCTCTACCCCACAAAGGTAGAGATAAGATCTGCGTATATCTTTCCCTCCCAAAACCCAAATTGTGGCCCTCGACAGACCCAACTTGTGGGATTACTGGGTATGTTGTTATAATGGCATTGAAACCTTAGGGCCTTTGTCTTATAGGAAGCAGAATACCTACCTGAATCTGAAAGTGGAGCTACTTATTAAGTTAATTTAATTCTTGCAAGGGTTCCTTGAGTTTTTGTAATTCTATTATTCTCATGACTAAATTACTGCATGGATATGATCCATAGGGACCAACTGGCTATTAGATTTTGTACAGGAAGAGATGATAAGACCACATGCAGCATATTTCAAGTTATGATGAATAGCAACTCATACTTTTTGTCTGGTATTAAGAATGTTTTTGGTTAAGTGTCTTTGACAAATTTCTAATGAGGAACTGTGCTTTTTAATGATGGTTAATTGGTCATCTACTTCCTGCATCACCATTATCCTAGTGGGTTTTCTTTCCACAATGTTGTTCTGCAGATTGTTTCCCATTCATATGCATTTATTGCTCTCTTTTGGTTCTTATTTCCTTTGTGATGAAACAGAAAAAATACAGTAAGACGTATTTCTTTGTATCTAAATCCGTTCTTCTGCTTCAGGGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAGGTATGGAACTATGGATATGTATAAACCGTTTGTTCGTAATCAGGTTTATAGTTCTGAACTGTTCTTTCAAGTATGATGTTGATCTTATTGTGGAAGATGTATATACATTTTTTTTCTTCGTTCTTCTTTCCCAGATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAGGTCTGTTTCTATAGCTTTTCTTATGGGTGACTAGATTAATCAATGCTGGAAAGATACAAGTGCTGGCTTAACGATTGCCAGAGGTTGTTTAAGAACCACTAAATATGTTAAATTCTTTTGCTTGCAGGTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCTGTGAGTGTCAGATTAACTTGGTTTACTTGTATAATATCGATCAGATAATTGGCTGATGTAAATGATCTTAACAAAATGATACTGATTACAATTTTATTTTGAAGGTCAATGTATG</genome_strand>
        <mrna_strand>ATTCGGCACGAGGCCCAACTCAACCTGATAACATGCAATGGCAAGTGCAAAATCTTTCAGACATGGGCGGGGTTTTATGTTTGTGAACCTAAAACCCTGTGTGTGTACAAATAAAATGCCCCAAATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAG......................................................................................................................................ATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAG...............................................................................................................................GTCTTTTATTGACTTTGGCTGGCATGGGAGAAAAAGGAATGTCT........................................................................................................GTCAATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299817" ref_strand="+" ref_description="SGN-E299817 [cLEW-1-K7]">
      <seq>aatctcaagcctacgccgcttgttctcctccgccaatcaccacgcacttctcacttcccctttaaccccaaaacctccgctttccctttctcatctcttcaaaatcaaacaacccccatttctccatacccacactcacaagccctgtcgtcttctcttcgccgcatattcaagaaaaaccaaaaatatcgaacgacccggttcgttgagcggttcaagaaggcgtagtagtagcagtagttcaaataaggagaataaagggaagtcggtaatggaagaaagtagtagtagtagtgcgattgctgagtctgttgggtttaataaaagaagggctgaaggtaaagataagaatgatggtcccaggaaaaaccttcaactcaaagttcgcaaactcaaccctgttaatactatttcatacgtccagatccttgggactggcatggatacacaagatacaacaccctcagtccttctcttctttgataaacagaggtttatttttaatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="109093" stop="106866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108793" g_stop="108370" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108369" i_stop="107253" i_length="1117">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107252" g_stop="107166" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="511" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E299817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108793" e_stop="108370"/>
          <exon e_start="107252" e_stop="107166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAGGTACTAAATTAGTAGTTGTTAATAAGTTTCCCCTTTTAATAAAGAAAGCATTTTTATTGAAGCTAACGAGAAAGGAATGTAAGACAAACTGTGTTAGTTGTTTGTTATGATCCTGGTTTGTTATGTGGTTGAATGAAGATGGTTTCCACGTTTGTTCTCGATGACGTAATGATGTATACTATTGCTGGCATTGAAGAAGATGCAGAAAAAAAATACAAAATGGTAGAAATGAAAAAACTTTGGTAGTTACGTTCCATAAGAACACTATGCTAGTGTCAGAGAGCTAACTAAGTTCAAAAAGATTTATAGTTCCCATGTTTATTTGGACGCGAAGTTGGTCCATGCAGTTATTGTGTAGGTCTAGTGAGTGGGTCGCAGGTGGATTGTTTTTACTGATATCTGATGTCGATAGGGAGGAAAAAATTATGTTTGTATGTTTTGAGGGAGCAAATGCTATGGATAGAGTTATAGGGTATGTTGGTGAGGAAAGTGTTTGATTTGGAACTTTTTCTGAATCATTTCTAGTTTTAGTTGGGTTTAAAAATTGATGACATGTGTAGTCCGGTAGGATAAGACAAGAGGATAGTGTTTTGGCAACTATAAGTGTAGTTTGAAGCAAGTGATATGGAGTAGGAGTGAGGACATTGATTGAAAATGGCTTCTTTTCTATGGGAAGTATTTTTCTTCAAGATTACATTTTTTAACACCTAAATATGTTTTCTTCAAGTAAAACATTTTTAGCAGAGGGATTCCAGTTCAATATTAAAACAAACAGTATAACACACTAACAGAATTCAGCATGGTGGTTATGTAATGTTAGTCCTAGAAAGTAACATAACATGAACTAGCAGCCCCAGTAAGGTCCTACCCCTATTTATAATTTTTTTTTGGGGTATATTTAAGGCAGATTTGACAATTTATTTTTGCATGAAGGGACTCTAAAGTTCCTATGATTATGGTCATATACTTGAACGCGCAAAGGTTTTGTCTGGTTGGATTGGAATCTTATTTCCCAAATTTATGATTATGTGAATCTAATAACTGATATTGTTCCTCTCTCACTTCCTCGCGAAGAAATTGAAAAGTCATTGACTTCTCTTCCTTTAAATTCTCACAGATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGA</genome_strand>
        <mrna_strand>AATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602912" ref_strand="-" ref_description="SGN-E602912 [55988]">
      <seq>caaatgctgcacttgatccggctgggctcgtagctattgcagtttgccagggatttgctctatttgtgccgtttcagtttcagctaacatctcttggtggtcatgttaaccctngctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccattcaaatttcgtttttaaaaaaagagggaagaaaaagcaaatgcttttttgttgtttctttctttgtttttttccaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatctttcggcgagatgttcttgttatgatggtctaatttgatgaaatcattcgcaatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111751" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111451" g_stop="111213" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110528" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="835" r_length="595" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110527" i_stop="110339" i_length="189">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110338" g_stop="110323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="851" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E602912" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602912" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111451" e_stop="111213"/>
          <exon e_start="111137" e_stop="110528"/>
          <exon e_start="110338" e_stop="110323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTC-CGGTGGTCATGTTAACCCT-GCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAAAAAAAA</genome_strand>
        <mrna_strand>CAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCAGGGATTTGCTCTATTTGT-GCCGTTTCAGTTTCAGCTAACATCTCTTGGTGGTCATGTTAACCCTNGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTCAAATTTCG---TTTTT-AAAAAAAGAGGGAAGA-AAAAGCAAATGC--T-TTTTTGTTGTTTCTTTCTTTG--TTTTTTT---CCAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTCGGCGAGATGTTCTTGTTATGATGGTCTAATTTGATGAAATCATTCGCAATC.............................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351340" ref_strand="+" ref_description="SGN-E351340 [cTOS-12-I19]">
      <seq>tggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattggttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111164" stop="110219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110864" g_stop="110520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110338" g_stop="110323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="361" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E351340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110864" e_stop="110520"/>
          <exon e_start="110338" e_stop="110323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAAAAAAAA</genome_strand>
        <mrna_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGGTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA.....................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351551" ref_strand="+" ref_description="SGN-E351551 [cTOS-12-K18]">
      <seq>tggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111164" stop="110219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110864" g_stop="110520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110338" g_stop="110323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="361" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E351551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110864" e_stop="110520"/>
          <exon e_start="110338" e_stop="110323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAAAAAAAA</genome_strand>
        <mrna_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA.....................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353446" ref_strand="+" ref_description="SGN-E353446 [cTOS-15-N6]">
      <seq>tggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111164" stop="110219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110864" g_stop="110520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110338" g_stop="110323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="361" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E353446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110864" e_stop="110520"/>
          <exon e_start="110338" e_stop="110323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAAAAAAAA</genome_strand>
        <mrna_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA.....................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354970" ref_strand="+" ref_description="SGN-E354970 [cTOS-19-O20]">
      <seq>tggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111164" stop="110219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110864" g_stop="110520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110338" g_stop="110323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="361" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E354970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110864" e_stop="110520"/>
          <exon e_start="110338" e_stop="110323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAAAAAAAA</genome_strand>
        <mrna_strand>TGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA.....................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401947" ref_strand="+" ref_description="SGN-E401947 [PPC-5-H2]">
      <seq>tgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccatttgaatttcgtttttttttttaaaaaaagggaaggaaaagcaatattttttgttgtttctttctttgttttttccgaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatcttttggtgagatgttcttgtcatgatgctctaatttgatgaaatcgttcacaatcattcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111437" stop="110219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111213" g_stop="111213" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110520" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="606" r_length="605" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.657" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110338" g_stop="110329" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="616" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E401947" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111213" e_stop="111213"/>
          <exon e_start="111137" e_stop="110520"/>
          <exon e_start="110338" e_stop="110329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATA-TTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGCTTTTTTATTTTTATTTTTTGTAATTTTAATATTGTCCATCTAGTTAAAAGTACTTAATATATAAATTTGATTAACGAAAAAATATACTAAATCAATGAACAAATAAATAAGATAACTATGAATATCAAACAAAAATAATAAATATGTGGATCATTTTTAACTTGCTTTCCAGAAAAGGAGAA</genome_strand>
        <mrna_strand>T...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTTGAATTTCGTTTTTTTT------TTTAAAAAA-AGGGAAGGAAAAGCAATATTTTTTGTTGTTTCTTTCTTTG---TTTTTT--CCGAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTTGGTGAGATGTTCTTGTCATGATGCTCTAATTTGATGAAATCGTTCACAATCATTCATTA.....................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295718" ref_strand="+" ref_description="SGN-E295718 [cLET-25-N22]">
      <seq>aacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatccatttnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111227" stop="110221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110927" g_stop="110511" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E295718" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110927" e_stop="110511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGC</genome_strand>
        <mrna_strand>AACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTT-AAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTTNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308537" ref_strand="+" ref_description="SGN-E308537 [cLEY-21-F18]">
      <seq>gctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgtttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgtgatttctttctttgatcctttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111221" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110921" g_stop="110519" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E308537" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110921" e_stop="110519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCG-TTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAA</genome_strand>
        <mrna_strand>GCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTGATTTCTTTCTTTGATCCTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336485" ref_strand="+" ref_description="SGN-E336485 [cTOE-4-N17]">
      <seq>ggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgatatttctttctttggttttttttcccccaattgttgtattgattttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111135" stop="110225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110835" g_stop="110525" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E336485" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110835" e_stop="110525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATC</genome_strand>
        <mrna_strand>GGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGATATTTCTTTCTTTGGTTTTTTTTCCCCCAATTGTTGTATTGATTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406121" ref_strand="-" ref_description="SGN-E406121 [PPI-2-F10]">
      <seq>gctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccattcaaatttcgtttttaaaaaaagagggaagaaaaagcaaatgcttttttgttgtttctttctttgtttttttccaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatctttcggcgagatgttcttgttatgatggtctaatttgatgaaatcattcgcaatcaaaaaaaaaaaaaaaaaaaactcgagactagtctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111554" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111254" g_stop="111213" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110528" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="637" r_length="595" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="658"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E406121" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111254" e_stop="111213"/>
          <exon e_start="111137" e_stop="110528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATC</genome_strand>
        <mrna_strand>GCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTCAAATTTCG---TTTTT-AAAAAAAGAGGGAAGA-AAAAGCAAATGC--T-TTTTTGTTGTTTCTTTCTTTG--TTTTTTT---CCAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTCGGCGAGATGTTCTTGTTATGATGGTCTAATTTGATGAAATCATTCGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283617" ref_strand="-" ref_description="SGN-E283617 [cLES-1-K13]">
      <seq>gttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtattttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttttaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgagatgttcttgttatgatgctctaatttgatgaaatcattcgcaatcaaaaaaaaaaaaaaaaaactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111217" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110917" g_stop="110528" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="409"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E283617" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283617" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110917" e_stop="110528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATC</genome_strand>
        <mrna_strand>GTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTATTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTTTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404194" ref_strand="+" ref_description="SGN-E404194 [PPC-12-N24]">
      <seq>gtgagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccatttgaatttcgtttttttttttaaaaaaagggaaggaaaagcaatattttttgttgtttctttctttgttttttccgaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatcttttggtgagatgttcttgtcatgatgctctaatttgatgaaatcgttcaccatcaaaanaaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111417" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111117" g_stop="110534" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E404194" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111117" e_stop="110534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATA-TTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTC</genome_strand>
        <mrna_strand>GTGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTTGAATTTCGTTTTTTTT------TTTAAAAAA-AGGGAAGGAAAAGCAATATTTTTTGTTGTTTCTTTCTTTG---TTTTTT--CCGAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTTGGTGAGATGTTCTTGTCATGATGCTCTAATTTGATGAAATCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350440" ref_strand="+" ref_description="SGN-E350440 [cTOS-5-D14]">
      <seq>ggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggtttgcagctgtacatccattatcttttggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111191" stop="110272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110891" g_stop="110573" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="353"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E350440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110891" e_stop="110573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAG</genome_strand>
        <mrna_strand>GGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436520" ref_strand="-" ref_description="SGN-E436520 [STM-63-I19]">
      <seq>gccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaatgagttttaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccatttgaatttcgtttttttttttaaaaaaagggaaggaaaagcaatattttttgttgtttctttctttgttttttccggaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatcttttgggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111610" stop="110272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111310" g_stop="111213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110578" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="646" r_length="548" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="659"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E436520" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436520" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111310" e_stop="111213"/>
          <exon e_start="111137" e_stop="110578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATA-TTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTG</genome_strand>
        <mrna_strand>GCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAATGAGTTTTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTTGAATTTCGTTTTTTTT------TTTAAAAAA-AGGGAAGGAAAAGCAATATTTTTTGTTGTTTCTTTCTTTG---TTTTTT-CCGGAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601095" ref_strand="+" ref_description="SGN-E601095 [54123]">
      <seq>ctggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaagcccattcaaatttcgtttttaaaaaaagagggaagaaaaagcaaatgcttttttgttgtttctttctttgtttttttccaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111592" stop="110278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111292" g_stop="111213" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110578" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="625" r_length="545" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E601095" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111292" e_stop="111213"/>
          <exon e_start="111137" e_stop="110578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTG</genome_strand>
        <mrna_strand>CTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCT-AAAAAAAGCCCATTCAAATTTCG---TTTTT--------AAAAAAAGAGGGAAGAAAAAGCAA-ATGCTTTTTTGTTGTTTCTTTCTTTGTTTTT-TTCCAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405448" ref_strand="-" ref_description="SGN-E405448 [PPC-18-G6]">
      <seq>ccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaatgagttttaaattgaatttgtttgagtttgatttgtgggtttaaaaaaagcccctttgaatttcgtttttttttttaaaaaaagggaaggaaaagcaatattttttgttgtttctttctttgttttttccgaattgttgttttgtttttctagttattggtttgcagctgtatatgcattatcttttggtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111326" stop="110272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111026" g_stop="110578" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="473"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E405448" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405448" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111026" e_stop="110578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATA-TTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTG</genome_strand>
        <mrna_strand>CCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAATGAGTTTTAAATTGAATTTGTTTGAGTTTGATTTGTGGGT-TTAAAAAAAGCCCCTTTGAATTTCGTTTTTTTT------TTTAAAAAA-AGGGAAGGAAAAGCAATATTTTTTGTTGTTTCTTTCTTTG---TTTTTT--CCGAATTGTTGTTTTGTTTTTCTAGTT-ATTGGTTTGCAGCTGTATATGCATTATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540310" ref_strand="+" ref_description="SGN-E540310 [TUS-60-I9](-)">
      <seq>ctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaagagggaagaaaaaacaatatttttgttatttctttctttgtttttttttcccccaattgttgtattgtttttctagttctttggttgcagctgaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111600" stop="110292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111300" g_stop="111213" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110597" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="628" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="651"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E540310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111300" e_stop="111213"/>
          <exon e_start="111137" e_stop="110597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCT</genome_strand>
        <mrna_strand>CTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGG-TTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729716" ref_strand="+" ref_description="SGN-E729716 [LA21DE08]">
      <seq>aaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaacgagggaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112201" stop="110392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111901" g_stop="111749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="404" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110676" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="865" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E729716" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111901" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAA</genome_strand>
        <mrna_strand>AAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTT-AAAAAAAAAAAAACGAGGGAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542529" ref_strand="+" ref_description="SGN-E542529 [TUS-63-O5](-)">
      <seq>ggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111727" stop="110388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111427" g_stop="111213" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110690" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="663" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E542529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111427" e_stop="111213"/>
          <exon e_start="111137" e_stop="110690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548762" ref_strand="+" ref_description="SGN-E548762 [TUS-64-C24](-)">
      <seq>gattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111625" stop="110388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111325" g_stop="111213" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110690" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="561" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E548762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111325" e_stop="111213"/>
          <exon e_start="111137" e_stop="110690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371666" ref_strand="+" ref_description="SGN-E371666 [TUS-29-I10](-)">
      <seq>gccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112076" stop="110396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111776" g_stop="111749" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="279" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110696" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="721" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E371666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111776" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAA</genome_strand>
        <mrna_strand>GCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391221" ref_strand="+" ref_description="SGN-E391221 [TUS-48-H23](-)">
      <seq>gccgtttcgattttccgctaacatttccgggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattttccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgttagagtttgatttgtgggtgtaaaaaaaagcccatttgaaaatggtttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111683" stop="110395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111383" g_stop="111213" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110696" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="615" r_length="442" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E391221" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111383" e_stop="111213"/>
          <exon e_start="111137" e_stop="110696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTTCGA-TTTCCGCTAACATCTCC-GGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAA</genome_strand>
        <mrna_strand>GCCGTTTCGATTTTCCGCTAACATTTCCGGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTTTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTAGAGTTTGATTTGTGGGTGTAAAAAAAAGCCCATTTGAAAATGGTTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302629" ref_strand="+" ref_description="SGN-E302629 [cLEX-1-K11](-)">
      <seq>tttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111679" stop="110398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111379" g_stop="111213" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110698" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="607" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E302629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111379" e_stop="111213"/>
          <exon e_start="111137" e_stop="110698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAA</genome_strand>
        <mrna_strand>TTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206164" ref_strand="+" ref_description="SGN-E206164 [cLEC-29-A23]">
      <seq>taacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgtaagtccttcaatttttacgaccgatttttattttgttttagattactaatttcactttttacgacgatctcaggctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagcccatttgaatttcgttttttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111666" stop="110399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111366" g_stop="110699" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E206164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111366" e_stop="110699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAA</genome_strand>
        <mrna_strand>TAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590764" ref_strand="+" ref_description="SGN-E590764 [44366]">
      <seq>ctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactgggtaactttgagggtttctggatctactgngttggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaaacatgctccttttatccaattgaagttctagattcgaatttgtctcgagtttgaattgtgggtctaaaaaaggcccattcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112220" stop="110431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111920" g_stop="111749" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="421" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110716" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="849" r_length="428" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E590764" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111920" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGT-GGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAG-AACATGCTCC-TTTATCCAA-TG-AGTTCTAAATT-GAATTTGT-TTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATT</genome_strand>
        <mrna_strand>CTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGGTAACTTTGAGGGTTTCTGGATCTACTGNGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAAACATGCTCCTTTTATCCAATTGAAGTTCTAGATTCGAATTTGTCTCGAGTTTGAATTGTGGGTCT-AAAAAAGGCCCATTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727612" ref_strand="+" ref_description="SGN-E727612 [LA15AH04]">
      <seq>gtcccgcataatatggttaatgcttattttgaattcatatcaaatagattgattcaggtttataagttataccaaaatcatatccttttactagatccgcttctgatcaagtaatatatattctatttttgtgtatttttactattgatcgatgtatgagagattttaaatttggtattgtttggatacaggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatttgtttgagtttgatttgtgggtctaaaaaaaagccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111954" stop="110423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111654" g_stop="111213" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110722" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="858" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E727612" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111654" e_stop="111213"/>
          <exon e_start="111137" e_stop="110722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATT</genome_strand>
        <mrna_strand>GTCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307753" ref_strand="+" ref_description="SGN-E307753 [cLEY-16-L11]">
      <seq>taacatctccggtggtcatgttaaccctgcggtcacctgtcgattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagagggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagttcatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctttatccaatgagttctaaattgaatctgtttgagtttgatttgtgggtctaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111666" stop="110428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111366" g_stop="111213" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110728" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="564" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307753" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111366" e_stop="111213"/>
          <exon e_start="111137" e_stop="110728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAG</genome_strand>
        <mrna_strand>TAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTCGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGAGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTCATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATCTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407542" ref_strand="+" ref_description="SGN-E407542 [PPI-7-N23]">
      <seq>gctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaatgagttctaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112109" stop="110464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111809" g_stop="111749" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="312" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110764" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="686" r_length="374" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E407542" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111809" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGA</genome_strand>
        <mrna_strand>GCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAATGAGTTCTAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616820" ref_strand="+" ref_description="SGN-E616820 [90291]">
      <seq>tctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtcntcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggaagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctttatccaatgagttctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112221" stop="110467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111921" g_stop="111749" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="424" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110767" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="795" r_length="371" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E616820" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111921" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTC-TCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGG-AGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAAT</genome_strand>
        <mrna_strand>TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCNTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTTTATCCAATGAGTTCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542733" ref_strand="+" ref_description="SGN-E542733 [TUS-64-C24]">
      <seq>caatttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcgtaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaatgtgttcatgacacaagaacatgctcctttatcccaatgagtctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="443" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110768" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="812" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E542733" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTAT-CCAATGAGTTCTAAA</genome_strand>
        <mrna_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCGTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACAC-AATGTGTTCATGACACAAGAACATGCTCCTTTATCCCAATGAG-TCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579120" ref_strand="+" ref_description="SGN-E579120 [86245]">
      <seq>attttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttatttacaccaaatgtgttcatgcaacaagaacatgctcttttatccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110777" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="798" r_length="362" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E579120" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACA-CAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAAATGTGTTCATGCAACAAGAACATGCTCTTTTATCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410551" ref_strand="+" ref_description="SGN-E410551 [PPI-17-I18]">
      <seq>ctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccatttttcggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattaatttggtgggtaagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctccttttatccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112220" stop="110477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111920" g_stop="111749" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="421" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110777" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="786" r_length="365" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E410551" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111920" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATT-AGTTGGT-GGT-AGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCC-TTTATCCAATG</genome_strand>
        <mrna_strand>CTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTTCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAATTTGGTGGGTAAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTTTTATCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402573" ref_strand="+" ref_description="SGN-E402573 [PPC-8-I9]">
      <seq>gtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgaggggttctggatctactggattggtccattaatttggtggtagtttggctggtcttatttacaccaatgtgttcatgcaacaagaacatgctcctctatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112184" stop="110478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111884" g_stop="111749" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="387" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110778" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="748" r_length="361" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E402573" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111884" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATT-AGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAAT</genome_strand>
        <mrna_strand>GTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGGTTCTGGATCTACTGGATTGGTCCATTAATTTGGTGGTAGTTTGGCTGGTCTTATTTACACCAATGTGTTCATGCAACAAGAACATGCTCCTCTATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461839" ref_strand="+" ref_description="SGN-E461839 [cPRO-9-D4]">
      <seq>tagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtcccattagttggtggtagtttggctggtctatttacacccatgtgttcatgcaacnagaacatgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112165" stop="110486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111865" g_stop="111749" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="368" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110786" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="720" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E461839" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111865" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGT-CCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTT</genome_strand>
        <mrna_strand>TAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCCATTAGTTGGTGGTAGTTTGGCTGGTC-TATTTACACCCATGTGTTCATGCAACNAGAACATGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312596" ref_strand="+" ref_description="SGN-E312596 [cLEZ-20-B11]">
      <seq>agtttgccatggatttgctctattcgtagccgtttcgatgtccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111711" stop="110486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111411" g_stop="111213" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110786" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="551" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E312596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111411" e_stop="111213"/>
          <exon e_start="111137" e_stop="110786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTT</genome_strand>
        <mrna_strand>AGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATGTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312449" ref_strand="+" ref_description="SGN-E312449 [cLEZ-20-K2]">
      <seq>agtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111711" stop="110489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111411" g_stop="111213" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110789" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="548" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E312449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111411" e_stop="111213"/>
          <exon e_start="111137" e_stop="110789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTC</genome_strand>
        <mrna_strand>AGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286528" ref_strand="+" ref_description="SGN-E286528 [cLES-12-J3]">
      <seq>ttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctggtcttatttacacaaatgtgttcatgacacaagaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112079" stop="110490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111779" g_stop="111749" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="282" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110790" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="630" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E286528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111779" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCT</genome_strand>
        <mrna_strand>TTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578961" ref_strand="+" ref_description="SGN-E578961 [86084]">
      <seq>tctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaattgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggttctggatctactgcgttgggcattagttggtggcggtttggctggtctaatttacaccaatgtgttcatgcacaagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112231" stop="110494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111931" g_stop="111749" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="430" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110794" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="772" r_length="342" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E578961" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111931" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAA-TGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACA</genome_strand>
        <mrna_strand>TCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATTGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGG-TTCTGGATCTACTGCGTTGG-GCATTAGTTGGTGGCGGTTTGGCTGGTCTAATTTACACCAATGTGTTCATG-CACAAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560238" ref_strand="+" ref_description="SGN-E560238 [19860]">
      <seq>ttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattagttggtggtagtttggctggtcttattacaccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110813" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="757" r_length="324" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E560238" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATG</genome_strand>
        <mrna_strand>TTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTA-TTACACCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211011" ref_strand="+" ref_description="SGN-E211011 [cLEC-69-A5]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="110530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110830" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="741" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E211011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGG</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408528" ref_strand="+" ref_description="SGN-E408528 [PPI-11-I20]">
      <seq>agttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccctgcatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112209" stop="110534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111909" g_stop="111749" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="410" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110834" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="714" r_length="304" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E408528" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111909" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGG</genome_strand>
        <mrna_strand>AGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCCTGCATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579571" ref_strand="+" ref_description="SGN-E579571 [86701]">
      <seq>ttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccattagttggtggtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110838" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="733" r_length="300" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E579571" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGT</genome_strand>
        <mrna_strand>TTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405895" ref_strand="+" ref_description="SGN-E405895 [PPI-1-N24]">
      <seq>attttctctctaagtctattattagtagtgaattaaattattttttatagtgaacaatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtccattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110849" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="726" r_length="289" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E405895" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTATTTTTTATAGTG-AACAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402133" ref_strand="+" ref_description="SGN-E402133 [PPC-6-F13]">
      <seq>gtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctactggattggtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112127" stop="110551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111828" g_stop="111749" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="331" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110851" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="618" r_length="287" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E402133" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111828" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATT</genome_strand>
        <mrna_strand>GTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464459" ref_strand="+" ref_description="SGN-E464459 [cPRO-18-E23]">
      <seq>ctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctactgggttggtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="110553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="429" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110853" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="714" r_length="285" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E464459" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCA</genome_strand>
        <mrna_strand>CTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGGTTGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579879" ref_strand="+" ref_description="SGN-E579879 [87012]">
      <seq>tctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatatnttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaaatggctactggtaactttgaggggtttctggatctactgggttggtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="428" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110853" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="715" r_length="287" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E579879" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGC-AATGGTTAGTGGTAACTTTGA-GGGTTTCTGGATCTACTGGATTGGTCCA</genome_strand>
        <mrna_strand>TCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATNTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAAATGGCTACTGGTAACTTTGAGGGGTTTCTGGATCTACTGGGTTGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578284" ref_strand="+" ref_description="SGN-E578284 [LE12BH01]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattggtggagctaatattttggctgcccgaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="110557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110856" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="715" r_length="282" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E578284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGT</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGGTGGAGCTAATATTTTGGCTGCCCGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466554" ref_strand="+" ref_description="SGN-E466554 [cPRO-24-H18]">
      <seq>ttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccctgcatggctactggtaactttgagggtttctggatctactggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110859" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="712" r_length="279" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E466554" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATT</genome_strand>
        <mrna_strand>TTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCCTGCATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214038" ref_strand="+" ref_description="SGN-E214038 [cLEC-80-A19]">
      <seq>aggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112225" stop="110560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111925" g_stop="111749" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="428" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110859" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="707" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E214038" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111925" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATT</genome_strand>
        <mrna_strand>AGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328987" ref_strand="+" ref_description="SGN-E328987 [cTOC-24-E15]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggaccctgcatggttagtggtaactttgaaggttctggatctactggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110860" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="717" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E328987" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGAT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCCTGCATGGTTAGTGGTAACTTTGAAGG-TTCTGGATCTACTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371667" ref_strand="+" ref_description="SGN-E371667 [TUS-29-I10]">
      <seq>tctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcattttgacctgcaatggttagtggtaactttgagggtttctggatctactggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112231" stop="110560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111931" g_stop="111749" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110860" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="712" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E371667" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111931" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGAT</genome_strand>
        <mrna_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTTGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305782" ref_strand="+" ref_description="SGN-E305782 [cLEX-14-O20]">
      <seq>aagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagtggtaactttgagggtttctggatctactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112155" stop="110561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111855" g_stop="111749" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="358" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110861" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="635" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E305782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111855" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGA</genome_strand>
        <mrna_strand>AAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410822" ref_strand="+" ref_description="SGN-E410822 [PPI-18-M19]">
      <seq>attttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgncatggctactggtaactttgagggtttctggatctactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110862" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="712" r_length="276" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E410822" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGNCATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466833" ref_strand="+" ref_description="SGN-E466833 [cPRO-26-A20]">
      <seq>attattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattggtggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttgggacagcaatggctactggtaactttgagggtttctggatctactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112196" stop="110562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111899" g_stop="111749" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="400" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110862" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="676" r_length="276" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E466833" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111899" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGG</genome_strand>
        <mrna_strand>ATTAT--TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGGTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGGACAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402277" ref_strand="+" ref_description="SGN-E402277 [PPC-7-C8]">
      <seq>tttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacnattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccgcggatcaatgaaccagctcgttcatttggacctgcaatggctactggtaactttgagggtttctggatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112235" stop="110565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111935" g_stop="111749" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110865" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="705" r_length="271" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E402277" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111935" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTAC</genome_strand>
        <mrna_strand>TTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACNATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCC-GCGGATCAATGAA-CCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409738" ref_strand="+" ref_description="SGN-E409738 [PPI-14-N20]">
      <seq>tagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatncatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctggatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112210" stop="110565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111910" g_stop="111749" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="411" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110865" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="684" r_length="273" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409738" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111910" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTAC</genome_strand>
        <mrna_strand>TAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATNCATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407069" ref_strand="+" ref_description="SGN-E407069 [PPI-5-L10]">
      <seq>cttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaantggctactggtaactttgaggtttctggatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112124" stop="110565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111824" g_stop="111749" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="327" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110865" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="600" r_length="273" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E407069" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111824" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAA-TGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTAC</genome_strand>
        <mrna_strand>CTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAANTGGCTACTGGTAACTTTGA-GGTTTCTGGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410637" ref_strand="+" ref_description="SGN-E410637 [PPI-17-J15]">
      <seq>attttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactttgagggtttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110871" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="703" r_length="267" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E410637" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTTTGAGGGTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486562" ref_strand="+" ref_description="SGN-E486562 [cSTE-22-F5]">
      <seq>attttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110882" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="692" r_length="256" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E486562" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731972" ref_strand="+" ref_description="SGN-E731972 [LA28CH07]">
      <seq>cgatttgtctctctaaggatctattattagtagtgaattaccttattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtccccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaacattttggctgccggaccattctccggtggatcaatgaacccaactcgttcatttggacctgcaatggttagtggtaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="443" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110884" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="697" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E731972" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTT</genome_strand>
        <mrna_strand>CGATTTGTCTCTCTAAGGATCTATTATTAGTAGTGAATTACCTTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCCCCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAACATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAACTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407447" ref_strand="+" ref_description="SGN-E407447 [PPI-7-I14]">
      <seq>tctaagtctattacttagtagttaattaaattacttttttactagtgaaaatggctggcggcgtagctattggaagttttaagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggacctgcaatggctactggtaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="432" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110884" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="686" r_length="254" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E407447" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTA-TTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTT-AGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTT</genome_strand>
        <mrna_strand>TCTAA-G-TCTATTACTTAGTAGTTAATTAAATTACTTTTTTACTAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGCTACTGGTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600853" ref_strand="+" ref_description="SGN-E600853 [53875]">
      <seq>gtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagtcgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactggtaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112221" stop="110584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111922" g_stop="111749" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="423" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110884" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="677" r_length="254" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E600853" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111922" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTT</genome_strand>
        <mrna_strand>GTCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGTCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTGGTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407211" ref_strand="+" ref_description="SGN-E407211 [PPI-6-I22]">
      <seq>tctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttcgggcggatcaatgaacccagctcgttcatttggaccagcatggctactggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="428" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110887" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="678" r_length="250" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E407211" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAA</genome_strand>
        <mrna_strand>TCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCGGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGC-ATGGCTACTGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406293" ref_strand="+" ref_description="SGN-E406293 [PPI-3-G20]">
      <seq>caattttctctctaagtctactactagtagtgaactaaactattttttatagtgaacacggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacacctcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaaaggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaaccaagctcgttcatttggaccagcaatggctactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110889" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="688" r_length="249" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E406293" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACA-CTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGT</genome_strand>
        <mrna_strand>CAATT-TTCTCTCTAA-G-TCTACTACTAGTAGTGAACTAAACTA-T-TTTTTATAGTGAACACGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACCTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAAGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCAAGCTCGTTCATTTGGACCAGCAATGGCTACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478637" ref_strand="+" ref_description="SGN-E478637 [cSTD-6-E12]">
      <seq>attttctctctaagtctattattagtagtgaattaaattattttttattagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaagatgtgctattccaacccatggggactggagctgtgtggggataattgaangacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttggaccagcaatggctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110891" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="684" r_length="247" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E478637" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAG-TGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTG</genome_strand>
        <mrna_strand>ATTTTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTATT-TTTTATTAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAAGATGT...........................................................................GCTATTCCAACCCATGGGGACTGGAGCT-GTGTGGGGATAATTGAANGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCAGCAATGGCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409897" ref_strand="+" ref_description="SGN-E409897 [PPI-15-K4]">
      <seq>attaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccacccatggactgggagctggtnngtgggatattgaaggacttgtgatggaaataattatcacattttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcgggatcatgaanccagctcgttcatttggaacagcaatggctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112204" stop="110591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111904" g_stop="111749" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="405" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110891" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="652" r_length="247" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409897" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111904" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTG-AGCATACTAGAAGGACTCGTGATGGAAATAATAATCACA-TTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTG</genome_strand>
        <mrna_strand>ATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCC-ACCCATGGACTGGGAGCTGGTNNGTGGGATA-TTGAAGGACTTGTGATGGAAATAATTATCACATTTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGGATCATGAANCCAGCTCGTTCATTTGGAACAGCAATGGCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720606" ref_strand="+" ref_description="SGN-E720606 [FC11BB10]">
      <seq>ccctgcgggcacctgaggattaaccttcggcggacttataacctttatcactggactccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcatcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactaaaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaaaaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaacccagctcgttcatttggacctgcaatggttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111642" stop="110592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111342" g_stop="111213" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="110892" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="377" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E720606" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111342" e_stop="111213"/>
          <exon e_start="111137" e_stop="110892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGG-CTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGT</genome_strand>
        <mrna_strand>CCCTGCGGGCACCTGAGGATTAACCTTCGGCGGACTTATAACCTTTATCACTGGACTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCATCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAAAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAAAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409682" ref_strand="+" ref_description="SGN-E409682 [PPI-14-D18]">
      <seq>aattttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatncatgaacccagctcgttcatttggaccctgcatggctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="110594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111938" g_stop="111749" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110893" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="682" r_length="245" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409682" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111938" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAG</genome_strand>
        <mrna_strand>AATTTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATNCATGAACCCAGCTCGTTCATTTGGACCCTGCATGGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729334" ref_strand="+" ref_description="SGN-E729334 [LA20DA03]">
      <seq>agtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggcggatcaatgaacccagctcgttcatttggacctgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112209" stop="110598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111909" g_stop="111749" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="412" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110898" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="652" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E729334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111909" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATG</genome_strand>
        <mrna_strand>AGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542532" ref_strand="+" ref_description="SGN-E542532 [TUS-63-O5]">
      <seq>ttatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgatttgcattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatggacccagctcgttcatttggacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112195" stop="110601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111895" g_stop="111749" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="398" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110901" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="635" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E542532" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111895" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCA</genome_strand>
        <mrna_strand>TTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTTGCATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGGACCCAGCTCGTTCATTTGGACCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448632" ref_strand="+" ref_description="SGN-E448632 [cSTS-3-D10]">
      <seq>ctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtccattttccggcggatcaatgaacccagctcgttcatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112232" stop="110607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111932" g_stop="111749" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="431" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110907" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="662" r_length="231" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E448632" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111932" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGA</genome_strand>
        <mrna_strand>CTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGGTCCATTTTCCGGCGGATCAATGAACCCAGCTCGTTCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409766" ref_strand="+" ref_description="SGN-E409766 [PPI-15-C7]">
      <seq>caattttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccgggcgccgctgtagcttgcttcctcctcaaattcgtcaccgggagatgtgctattcccaccatggactgggagctgnnntgtgggatattgaaggacttgtgatggaaataatatcacatttggtttagtgtacactgtttttcgcacagccgctgacccgaagaagggtcattgggcacaattgcccgattgctattggtttcattgntggagctaatattttggctgctggtcattttccggcggatcatgaacccagctcgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="439" r_length="252" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="660" r_length="221" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E409766" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACC-GGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTG-AGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTG-TGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATT</genome_strand>
        <mrna_strand>CAATT-TTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGGAGATGT...........................................................................GCTATTCCCA-CCATGGACTGGGAGCTGNNNTGTGGGATA-TTGAAGGACTTGTGATGGAAATAAT-ATCACATTTGGTTTAGTGTACACTGTTTTTCGC-ACAGCCGCTGACCCGAAGAAGGG-TCATTGGGCACAATTGC-CCGATTGCTATTGGTTTCATTGNTGGAGCTAATATTTTGGCTGCTGG-TCATTTTCCGGCGGATC-ATGAACCCAGCTCGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404357" ref_strand="+" ref_description="SGN-E404357 [PPC-13-O8]">
      <seq>tggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctggtcattttccggcggatcaatgaaaccagctcgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112173" stop="110611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111873" g_stop="111749" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="376" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="602" r_length="226" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E404357" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111873" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATT</genome_strand>
        <mrna_strand>TGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGG-TCATTTTCCGGCGGATCAATGAAACCAGCTCGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302628" ref_strand="+" ref_description="SGN-E302628 [cLEX-1-K11]">
      <seq>aatttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggctgccggaccattctccggtggatcaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="110625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111749" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110925" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="655" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E302628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAAC</genome_strand>
        <mrna_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405804" ref_strand="+" ref_description="SGN-E405804 [PPI-1-N1]">
      <seq>caattttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttcattgttggagctaatattttggctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="438" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110950" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="626" r_length="188" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E405804" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGG</genome_strand>
        <mrna_strand>CAATT-TTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCATTGTTGGAGCTAATATTTTGGCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567887" ref_strand="+" ref_description="SGN-E567887 [12084]">
      <seq>cttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactggttttcgcaacaggcgcttgacccgaagaagggttcattgggggcacaattgcaccgattgctattggtttcattggtggagctaatattttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112124" stop="110657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111824" g_stop="111749" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="327" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110955" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="514" r_length="187" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E567887" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111824" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT-GTGTTCGCAACCGCCGC-TGACCCGAAGAAGGGTTCATT--GGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCT</genome_strand>
        <mrna_strand>CTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGGTTTTCGCAACAGGCGCTTGACCCGAAGAAGGGTTCATTGGGGGCACAATTGCACCGATTGCTATTGGTTTCATTGGTGGAGCTAATATTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307435" ref_strand="+" ref_description="SGN-E307435 [cLEY-12-F11]">
      <seq>aattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaaaggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112205" stop="110656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111905" g_stop="111749" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="408" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110956" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="590" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111905" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGC</genome_strand>
        <mrna_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAAGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285694" ref_strand="+" ref_description="SGN-E285694 [cLES-5-D18]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="110657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110957" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="614" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E285694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGG</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298093" ref_strand="+" ref_description="SGN-E298093 [cLEW-12-O3]">
      <seq>atttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaaaggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112238" stop="110658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111938" g_stop="111749" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="441" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110958" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="621" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E298093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111938" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTG</genome_strand>
        <mrna_strand>ATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAAGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306536" ref_strand="+" ref_description="SGN-E306536 [cLEX-13-J17]">
      <seq>ttagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactataaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaaaggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112214" stop="110658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111914" g_stop="111749" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="417" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110958" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="597" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E306536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111914" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTG</genome_strand>
        <mrna_strand>TTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTATAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAAGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311137" ref_strand="+" ref_description="SGN-E311137 [cLEZ-16-J19]">
      <seq>aaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcattgttggagctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112201" stop="110662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111901" g_stop="111749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="404" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110962" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="580" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E311137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111901" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATAT</genome_strand>
        <mrna_strand>AAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307584" ref_strand="+" ref_description="SGN-E307584 [cLEY-16-M13]">
      <seq>tttttctctctaaggatctattatggagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="441" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110977" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="602" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307584" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTAT-TAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCAT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATGGAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337211" ref_strand="+" ref_description="SGN-E337211 [cTOE-7-K3]">
      <seq>atttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaaaggttcattgggcacaattgcaccgattgcaattggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112238" stop="110678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111938" g_stop="111749" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="441" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110978" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="601" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E337211" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111938" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</genome_strand>
        <mrna_strand>ATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAAGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455627" ref_strand="+" ref_description="SGN-E455627 [cSTS-26-H16]">
      <seq>tctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcttcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgttttcgcaacagccgctgacccgaagaagggttcattgggcacaattgcaccgattgctattggtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="428" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110978" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="588" r_length="160" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E455627" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</genome_strand>
        <mrna_strand>TCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCTTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCTATTGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300848" ref_strand="+" ref_description="SGN-E300848 [cLEW-8-F7]">
      <seq>ttattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112217" stop="110678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111917" g_stop="111749" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="420" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110978" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="580" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E300848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111917" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</genome_strand>
        <mrna_strand>TTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287401" ref_strand="+" ref_description="SGN-E287401 [cLES-15-K22]">
      <seq>tagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgcaccgattgcaattggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112213" stop="110678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111913" g_stop="111749" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="416" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110978" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="576" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E287401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111913" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</genome_strand>
        <mrna_strand>TAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568542" ref_strand="+" ref_description="SGN-E568542 [12842]">
      <seq>tctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttggcatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggcatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtgcgggataattgaaggacttgtgatggcacataattatcacatttggtttagtgtacactgttttcgcaacagcgctgacccgaaaaagggttcactttgggcacaattgcaccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112127" stop="110692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111827" g_stop="111749" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="329" r_length="250" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110992" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="478" r_length="149" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E568542" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111827" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTG-AGCATACTAGAAGGACTCGTGATGG-AAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCA--TTGGGCACAATTGCACCGAT</genome_strand>
        <mrna_strand>TCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGGCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGG-CATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGCGGGATAATTGAAGGACTTGTGATGGCACATAATTATCACATTTGGTTTAGTGTACACTGTTTTCGCAACAG-CGCTGACCCGAAAAAGGGTTCACTTTGGGCACAATTGCACCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267151" ref_strand="+" ref_description="SGN-E267151 [cLEI-4-N24]">
      <seq>aattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112205" stop="110697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111905" g_stop="111749" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="408" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110997" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="549" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E267151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111905" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCA</genome_strand>
        <mrna_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299725" ref_strand="+" ref_description="SGN-E299725 [cLEW-1-B20]">
      <seq>ttattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112217" stop="110698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111917" g_stop="111749" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="420" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="110998" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="560" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E299725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111917" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="110998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGC</genome_strand>
        <mrna_strand>TTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307318" ref_strand="+" ref_description="SGN-E307318 [cLEY-12-L7]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccgaagaagggttcattgggcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111001" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="577" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAAT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267087" ref_strand="+" ref_description="SGN-E267087 [cLEI-4-O16]">
      <seq>aattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112205" stop="110724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111905" g_stop="111749" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="408" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111024" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="522" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E267087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111905" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCG</genome_strand>
        <mrna_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468401" ref_strand="+" ref_description="SGN-E468401 [cSTB-3-H1]">
      <seq>aaagaaatagccctatttgtgtcatcccaaaagccaattttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacacctcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggacttgtgatggaaataattatcacatttggtttagtgtacactgtattcgcaacagccgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112260" stop="110726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111970" g_stop="111749" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="473" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111026" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="585" r_length="112" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E468401" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111970" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAT-G-TCTATTTGTGTCAT-CCAAAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACA-CTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACC</genome_strand>
        <mrna_strand>AAAGAAATAGCCCTATTTGTGTCATCCCAAAAGCCAATTTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTATT-TTTT-ATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACCTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACTTGTGATGGAAATAATTATCACATTTGGTTTAGTGTACACTGTATTCGCAACAGCCGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298286" ref_strand="+" ref_description="SGN-E298286 [cLEW-18-G12]">
      <seq>taaaaatggctggcggcgtagctattggaagttttagtgatgcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactanaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112183" stop="110726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111883" g_stop="111749" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="386" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111026" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="498" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E298286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111883" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACC</genome_strand>
        <mrna_strand>TAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATGCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTANAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309788" ref_strand="+" ref_description="SGN-E309788 [cLEZ-10-C3]">
      <seq>taaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112202" stop="110728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111902" g_stop="111749" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="405" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111028" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="515" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E309788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111902" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGA</genome_strand>
        <mrna_strand>TAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391222" ref_strand="+" ref_description="SGN-E391222 [TUS-48-H23]">
      <seq>ctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgcaaccgcccgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112232" stop="110729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111932" g_stop="111749" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="435" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111029" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="545" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E391222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111932" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCG-CCGCTG</genome_strand>
        <mrna_strand>CTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301358" ref_strand="+" ref_description="SGN-E301358 [cLEW-24-H21]">
      <seq>tttttctctctaaagatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaagactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111040" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="538" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E301358" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAAGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAAGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307195" ref_strand="+" ref_description="SGN-E307195 [cLEY-15-F9]">
      <seq>ttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtanctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111936" g_stop="111749" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111040" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="537" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111936" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</genome_strand>
        <mrna_strand>TTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTANCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308782" ref_strand="+" ref_description="SGN-E308782 [cLEZ-14-B19]">
      <seq>tctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatactgtgttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="432" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111040" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="530" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E308782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</genome_strand>
        <mrna_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266677" ref_strand="+" ref_description="SGN-E266677 [cLEI-5-J15]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatgctgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="110743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="433" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111043" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="528" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E266677" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTT</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATGCTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299543" ref_strand="+" ref_description="SGN-E299543 [cLEW-20-C2]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactanaaggactcgtgatggaaataataatcacatttggtttagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111048" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="530" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E299543" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTANAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298240" ref_strand="+" ref_description="SGN-E298240 [cLEW-18-C4]">
      <seq>ttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112236" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111936" g_stop="111749" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111048" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="529" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E298240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111936" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</genome_strand>
        <mrna_strand>TTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211933" ref_strand="+" ref_description="SGN-E211933 [cLEC-66-G2]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111048" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="527" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E211933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311734" ref_strand="+" ref_description="SGN-E311734 [cLEZ-9-I19]">
      <seq>tattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112219" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111919" g_stop="111749" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="422" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111048" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="512" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E311734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111919" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</genome_strand>
        <mrna_strand>TATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306963" ref_strand="+" ref_description="SGN-E306963 [cLEY-11-D9]">
      <seq>tttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112192" stop="110748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111892" g_stop="111749" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="395" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111048" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="485" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E306963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111892" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</genome_strand>
        <mrna_strand>TTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307487" ref_strand="+" ref_description="SGN-E307487 [cLEY-12-L8]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttggtttagtttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111049" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="529" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATAC</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456388" ref_strand="+" ref_description="SGN-E456388 [cSTS-29-K4]">
      <seq>caattttctctctaagtctattattagtagtgaattaaattacttttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggactgggagctggtgtggggataatttgaagacttgtgatggaaataatatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E456388" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>CAATT-TTCTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTACT-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGACTGGGAGCTGGTGTGGGGATAATTTGAAGACTTGTGATGGAAATAAT-ATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301345" ref_strand="+" ref_description="SGN-E301345 [cLEW-24-B1]">
      <seq>aatttttctctctaaagatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtaactattggaagttttagtgattcattcagcgttgtctctcgtaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="110762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111749" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="518" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E301345" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>AATTTTTCTCTCTAAAGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAACTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCGTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290093" ref_strand="+" ref_description="SGN-E290093 [cLET-5-F17]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E290093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306892" ref_strand="+" ref_description="SGN-E306892 [cLEY-11-C13]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E306892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308090" ref_strand="+" ref_description="SGN-E308090 [cLEY-14-P12]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E308090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208215" ref_strand="+" ref_description="SGN-E208215 [cLEC-37-I18]">
      <seq>cggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112170" stop="110762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111870" g_stop="111749" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="373" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111062" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="449" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E208215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111870" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</genome_strand>
        <mrna_strand>CGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287867" ref_strand="+" ref_description="SGN-E287867 [cLES-19-M13]">
      <seq>cgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="111676" stop="110764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111376" g_stop="111213" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="111064" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="238" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E287867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111376" e_stop="111213"/>
          <exon e_start="111137" e_stop="111064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATT</genome_strand>
        <mrna_strand>CGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310928" ref_strand="+" ref_description="SGN-E310928 [cLEZ-17-J23]">
      <seq>aatttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagcgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggattagctctattcgcagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="110765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111749" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111065" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="515" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E310928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACAT</genome_strand>
        <mrna_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGCGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTAGCTCTATTCGCAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305082" ref_strand="+" ref_description="SGN-E305082 [cLEY-18-E11]">
      <seq>tgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataatcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112207" stop="110765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111907" g_stop="111749" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="410" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111065" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="483" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E305082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111907" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACAT</genome_strand>
        <mrna_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458606" ref_strand="+" ref_description="SGN-E458606 [cPRO-6-C24]">
      <seq>tttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaagacttgtgatggaaataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112235" stop="110770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111935" g_stop="111749" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111070" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="502" r_length="68" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E458606" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111935" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAAT</genome_strand>
        <mrna_strand>TTTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAAGACTTGTGATGGAAATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311476" ref_strand="+" ref_description="SGN-E311476 [cLEZ-18-B18]">
      <seq>ctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcaacgttgcctctcttaagtcctatcttgccgaattcatctacacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttgcgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttactcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgatcatactagaaggactcgtgatggaaataataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112232" stop="110770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111932" g_stop="111749" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="435" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111070" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="503" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E311476" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111932" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAAT</genome_strand>
        <mrna_strand>CTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAACGTTGCCTCTCTTAAGTCCTATCTTGCCGAATTCATCTACACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTGCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTACTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGATCATACTAGAAGGACTCGTGATGGAAATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308096" ref_strand="+" ref_description="SGN-E308096 [cLEY-14-A9]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaggactcgtgatggaaataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="437" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111071" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="504" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E308096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAA</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308739" ref_strand="+" ref_description="SGN-E308739 [cLEZ-11-M22]">
      <seq>tctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagctagcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactacaaggactcgtgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112221" stop="110777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111921" g_stop="111749" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="424" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111077" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="485" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E308739" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111921" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAA</genome_strand>
        <mrna_strand>TCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTAGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTACAAGGACTCGTGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540312" ref_strand="+" ref_description="SGN-E540312 [TUS-60-I9]">
      <seq>tctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggttaataactccgatccgatccctctttttcattttaattgttaacgaattctgcggttccaagtttgatttattgcttctgactcggaattatgccccgcataatatggttaatgcttattttgaattcatatcaaatagattgattcaggtttataagttataccaaaatcatatccttttactagatccgcttctgatcaagtaatatatattctatttttgtgtatttttactattgatcgatgtatgagagattttaaatttggtattggtttggatacaggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatactagaaagactcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112231" stop="110782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111931" g_stop="111213" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111137" g_stop="111082" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="776" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E540312" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111931" e_stop="111213"/>
          <exon e_start="111137" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATT-GTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGAT</genome_strand>
        <mrna_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAAGACTCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401593" ref_strand="+" ref_description="SGN-E401593 [PPC-4-P5]">
      <seq>caattttctctctaagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtggggataattgaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="438" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111088" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="488" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E401593" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACT</genome_strand>
        <mrna_strand>CAATT-TTCTCTCTAA-G-TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGGGGATAATTGAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341203" ref_strand="+" ref_description="SGN-E341203 [cTOE-22-I17]">
      <seq>tctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112233" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111933" g_stop="111749" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111097" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="477" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E341203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111933" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</genome_strand>
        <mrna_strand>TCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408740" ref_strand="+" ref_description="SGN-E408740 [PPI-12-G1]">
      <seq>taagtctattattagtagttaattaaattattttttatagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagcaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggccatgttaaccctgctgtcacctgcggattaaccttcggcggccatattacctttattactggctccttctacatgtttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagntggtgtggggataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112227" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111927" g_stop="111749" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="426" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111097" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="467" r_length="41" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E408740" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111927" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</genome_strand>
        <mrna_strand>TAAG--TCTATTATTAGTAGTTAATTAAATTA-T-TTTTTATAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGCAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGCCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATTACTGGCTCCTTCTACATGTTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGNTGGTGTGGGGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306211" ref_strand="+" ref_description="SGN-E306211 [cLEY-13-J5]">
      <seq>aattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112200" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111900" g_stop="111749" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="403" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111097" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="444" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E306211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111900" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</genome_strand>
        <mrna_strand>AATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295809" ref_strand="+" ref_description="SGN-E295809 [cLET-25-L23]">
      <seq>attcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccaccactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112144" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111844" g_stop="111749" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="348" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111097" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="389" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E295809" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111844" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCA-CACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</genome_strand>
        <mrna_strand>ATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACCACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280641" ref_strand="+" ref_description="SGN-E280641 [cLER-1-J10]">
      <seq>tctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112231" stop="110798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111931" g_stop="111749" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111098" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="474" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E280641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111931" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATAC</genome_strand>
        <mrna_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307227" ref_strand="+" ref_description="SGN-E307227 [cLEY-15-J16]">
      <seq>tctattattagtagtgaattaaatgattatttttgtagtgaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtgagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112221" stop="110799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111921" g_stop="111749" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="424" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111099" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="463" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E307227" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111921" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATA</genome_strand>
        <mrna_strand>TCTATTATTAGTAGTGAATTAAATGATTATTTTTGTAGTGAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299534" ref_strand="+" ref_description="SGN-E299534 [cLEW-20-O5]">
      <seq>tatttttgtagtaaaaatggctggcggcgtanctattggaaggtgtagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtgggagctggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112194" stop="110805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111894" g_stop="111749" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="397" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111105" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="430" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E299534" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111894" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTG</genome_strand>
        <mrna_strand>TATTTTTGTAGTAAAAATGGCTGGCGGCGTANCTATTGGAAGGTGTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGGAGCTGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301716" ref_strand="+" ref_description="SGN-E301716 [cLEX-9-D22]">
      <seq>gatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattccaacccatggagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112223" stop="110815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111923" g_stop="111749" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="426" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111115" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="449" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E301716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111923" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGG</genome_strand>
        <mrna_strand>GATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294206" ref_strand="+" ref_description="SGN-E294206 [cLET-14-A21]">
      <seq>gatctattattagtagtgaattaaattatggtttttgcagtaaacatggctggcggcgtagctattggaagttatagtgattcattcagcgttgactctcttaagtcctatcttgccgaattcatctccacactcatctttgacttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtacctattgcagttagccatggattcgctctattcgtagccgttacgatatccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaactgaccggcgcacgtgtagctagcttcctcctcaaattcgccaccggaggatgtgctattccaacccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112223" stop="110910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111923" g_stop="111749" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="426" r_length="251" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111120" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="444" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E294206" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111923" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGA</genome_strand>
        <mrna_strand>GATCTATTATTAGTAGTGAATTAAATTATGGTTTTTGCAGTAAACATGGCTGGCGGCGTAGCTATTGGAAGTTATAGTGATTCATTCAGCGTTGACTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGACTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTACCTATTGCAGTTAGCCATGGATTCGCTCTATTCGTAGCCGTTACGATATCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTGACCGGCGCACGTGTAGCTAGCTTCCTCCTCAAATTCGCCACCGGAGGATGT...........................................................................GCTATTCCAACCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569091" ref_strand="+" ref_description="SGN-E569091 [13475]">
      <seq>tttatattaaaatatatttgtacactcctactacgtatacttgctatatatatgtgagcaaagaaatgcctatttgtgtcatccaaaagcaattttctctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattgcggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggaggatgtgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112334" stop="110910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112034" g_stop="111749" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="529" r_length="251" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111137" g_stop="111131" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="536" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E569091" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112034" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
          <exon e_start="111137" e_stop="111131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATTAAAAAATATTTGTACACTCCTACTACTACGTATACTACTTACTATATATATGTGACAAAGAAATGTCTATTTGTGTCATCCAAAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATT--GGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTC</genome_strand>
        <mrna_strand>TTTATATTAAAATATATTTGTACACT-C--CTACTACGTATACTTGCTA-TATATATGTGAG-CAAAGAAATGCCTATTTGTGTCATCCAAAAGCAATTTT-CTCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGCGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT...........................................................................GCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358037" ref_strand="+" ref_description="SGN-E358037 [cLHT-32-B17]">
      <seq>aatttttctctctaaggatctattattagtagtaaattaaattattatttttatagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctatttgtagccgtatcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgcggattaaccttcggcggccatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcaccggtggatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="110909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111749" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E358037" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT</genome_strand>
        <mrna_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTAAATTAAATTATTATTTTTATAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTAGCCGTATCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203797" ref_strand="+" ref_description="SGN-E203797 [cLEC-17-P19]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtatctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatgtccacactcatctttgtcttcgccggagatggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagattgccatggatttgctctattcctagccgtgtcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcggcacccgaggatgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111213" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="440" r_length="251" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E203797" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTATCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATGTCCACACTCATCTTTGTCTTCGCCGGAGATGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGATTGCCATGGATTTGCTCTATTCCTAGCCGTGTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGGCACCCGAGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291777" ref_strand="+" ref_description="SGN-E291777 [cLET-7-C5]">
      <seq>caatttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcaatnccttntttttttttcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112240" stop="110923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111940" g_stop="111749" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.47"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111223" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="443" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E291777" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111940" e_stop="111749"/>
          <exon e_start="111463" e_stop="111223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTC-AT--C-------TTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCAC</genome_strand>
        <mrna_strand>CAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCAATNCCTTNTTTTTTTTTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E566300" ref_strand="+" ref_description="SGN-E566300 [4739]">
      <seq>tattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112161" stop="110925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111861" g_stop="111749" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111225" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="352" r_length="239" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E566300" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111861" e_stop="111749"/>
          <exon e_start="111463" e_stop="111225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTC</genome_strand>
        <mrna_strand>TATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210569" ref_strand="+" ref_description="SGN-E210569 [cLEC-35-L18]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgctggctcaacttaccggcgccgctgtagcttgcttcctcctcaaattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111226" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="427" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E210569" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTGGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209155" ref_strand="+" ref_description="SGN-E209155 [cLEC-38-D13]">
      <seq>tttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgctttctcctcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111229" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="424" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E209155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTTCTCCTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265530" ref_strand="+" ref_description="SGN-E265530 [cLEI-14-F5]">
      <seq>tgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttgtagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgccgctgtagcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112207" stop="110942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111907" g_stop="111749" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111242" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="381" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E265530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111907" e_stop="111749"/>
          <exon e_start="111463" e_stop="111242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCT</genome_strand>
        <mrna_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTGTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267218" ref_strand="+" ref_description="SGN-E267218 [cLEI-4-O20]">
      <seq>attgttatttttgtagtaaaaatggctggcggcgtagctattggaagggttagtgattcattcagcgatgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttgcgccattgcttacggcaagttgacaacagatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcagcggacatattacctttatcactggctacttctacatgcttgctcaacttaccggcgccgctgtagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112199" stop="110944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111899" g_stop="111749" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111244" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="371" r_length="220" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E267218" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111899" e_stop="111749"/>
          <exon e_start="111463" e_stop="111244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTG</genome_strand>
        <mrna_strand>ATTGTTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGGGTTAGTGATTCATTCAGCGATGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTGCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAGATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCAGCGGACATATTACCTTTATCACTGGCTACTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305902" ref_strand="+" ref_description="SGN-E305902 [cLEY-17-L19]">
      <seq>ttattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112198" stop="110955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111898" g_stop="111749" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111255" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="359" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E305902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111898" e_stop="111749"/>
          <exon e_start="111463" e_stop="111255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCC</genome_strand>
        <mrna_strand>TTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206521" ref_strand="+" ref_description="SGN-E206521 [cLEC-23-D2]">
      <seq>ttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112234" stop="110956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111934" g_stop="111749" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111256" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="394" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E206521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111934" e_stop="111749"/>
          <exon e_start="111463" e_stop="111256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGC</genome_strand>
        <mrna_strand>TTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309877" ref_strand="+" ref_description="SGN-E309877 [cLEZ-10-A17]">
      <seq>aattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112205" stop="110960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111905" g_stop="111749" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111260" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="361" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E309877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111905" e_stop="111749"/>
          <exon e_start="111463" e_stop="111260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCG</genome_strand>
        <mrna_strand>AATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206492" ref_strand="+" ref_description="SGN-E206492 [cLEC-23-F17]">
      <seq>aaagcaatttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112244" stop="110962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111944" g_stop="111749" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111262" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="398" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E206492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111944" e_stop="111749"/>
          <exon e_start="111463" e_stop="111262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTAC</genome_strand>
        <mrna_strand>AAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312662" ref_strand="+" ref_description="SGN-E312662 [cLEZ-20-J22]">
      <seq>gaggtttttctctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111941" g_stop="111749" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111263" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="394" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E312662" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111941" e_stop="111749"/>
          <exon e_start="111463" e_stop="111263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTA</genome_strand>
        <mrna_strand>GAGGTTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305435" ref_strand="+" ref_description="SGN-E305435 [cLEX-15-K14]">
      <seq>tctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgcttgctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112229" stop="110966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111929" g_stop="111749" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111266" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="379" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E305435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111929" e_stop="111749"/>
          <exon e_start="111463" e_stop="111266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAAC</genome_strand>
        <mrna_strand>TCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294389" ref_strand="+" ref_description="SGN-E294389 [cLET-14-M11]">
      <seq>tgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgatggctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgcttcgatttccgctaacatctccggtggtcatgttaaccctgcgggcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112207" stop="110975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111907" g_stop="111749" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111275" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="348" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E294389" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111907" e_stop="111749"/>
          <exon e_start="111463" e_stop="111275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGC</genome_strand>
        <mrna_strand>TGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGATGGCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGCTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGGCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243370" ref_strand="+" ref_description="SGN-E243370 [cLEF-16-F16]">
      <seq>gaattaaattattatttttgtagtaaaaatggctggcggcgtaactattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttctacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112206" stop="110975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111906" g_stop="111749" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111275" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="347" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E243370" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111906" e_stop="111749"/>
          <exon e_start="111463" e_stop="111275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGC</genome_strand>
        <mrna_strand>GAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAACTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208551" ref_strand="+" ref_description="SGN-E208551 [cLEC-39-P19]">
      <seq>tttttctctctaacgatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtatctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgcttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatattacctttatcactggctccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112237" stop="110981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111937" g_stop="111749" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111281" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="372" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E208551" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111937" e_stop="111749"/>
          <exon e_start="111463" e_stop="111281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCT</genome_strand>
        <mrna_strand>TTTTTCTCTCTAACGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTATCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGCTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404052" ref_strand="+" ref_description="SGN-E404052 [PPC-12-D17]">
      <seq>tctctaagtctattattagtagtgaattaaattattttttatagtgaacatggctggcggcgtagctattggaagttttagtgattcattctgcgttgcgtctcttaaggcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacagcaagttgacagtaaatgctgcacttgatccggctgggctcgtagctattgcagtttgccatggatttgctctatttgtggccgtttcagtttcagctaacatctctggtggtcatgttaaccctgctgtcacctgcggattaaccttcggcggccatattaccttaatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112231" stop="110990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111931" g_stop="111749" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111290" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="353" r_length="174" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E404052" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111931" e_stop="111749"/>
          <exon e_start="111463" e_stop="111290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTG</genome_strand>
        <mrna_strand>TCTCTAA-G-TCTATTATTAGTAGTGAATTAAATTA-T-TTTTTATAGTGAACATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCTGCGTTGCGTCTCTTAAGGCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACA.............................................................................................................................................................................................................................................................................................GCAAGTTGACAGTAAATGCTGCACTTGATCCGGCTGGGCTCGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTGGCCGTTTCAGTTTCAGCTAACATCTCTGGTGGTCATGTTAACCCTGCTGTCACCTGCGGATTAACCTTCGGCGGCCATATTACCTTAATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200647" ref_strand="+" ref_description="SGN-E200647 [cLEC-9-K6]">
      <seq>agtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcgggacatattacctttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112209" stop="110991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111909" g_stop="111749" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111291" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="335" r_length="174" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E200647" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111909" e_stop="111749"/>
          <exon e_start="111463" e_stop="111291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGC-GGACATATTACCTTTATCACT</genome_strand>
        <mrna_strand>AGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGGACATATTACCTTTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305623" ref_strand="+" ref_description="SGN-E305623 [cLEX-14-F13]">
      <seq>ggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctattcgtagccgtttcgatttccgctaacatctccggtggtcatgttaaccctgcggtcacctgtggattaaccttcggcggacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112224" stop="111004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111924" g_stop="111749" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111304" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="336" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E305623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111924" e_stop="111749"/>
          <exon e_start="111463" e_stop="111304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATAT</genome_strand>
        <mrna_strand>GGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357958" ref_strand="+" ref_description="SGN-E357958 [cLHT-32-A17]">
      <seq>aatttttctctctaaggatctattattagtagtaaattaaattattatttttatagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgctgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatccggctgggcttgtagctattgcagtttgccatggatttgctctatttgtagccgtatcgatttccgctaacatctccggtggtcatgttaaccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112239" stop="111037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111749" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111337" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="318" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E357958" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111749"/>
          <exon e_start="111463" e_stop="111337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGC</genome_strand>
        <mrna_strand>AATTTTTCTCTCTAAGGATCTATTATTAGTAGTAAATTAAATTATTATTTTTATAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCTGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTTGTAGCCGTATCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203936" ref_strand="+" ref_description="SGN-E203936 [cLEC-22-E9]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggcaagttgacaacaaatgctgcacttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="111134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111749" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111463" g_stop="111434" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="212" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E203936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111749"/>
          <exon e_start="111463" e_stop="111434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATC</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG.............................................................................................................................................................................................................................................................................................GCAAGTTGACAACAAATGCTGCACTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286806" ref_strand="+" ref_description="SGN-E286806 [cLES-14-I3]">
      <seq>ctctaaggatctattattagtagtgaattaaattattatttttgtagtaaaaatggctggcggcgtagctattggaagttttagtgattcattcagcgttgtctctcttaagtcctatcttgccgaattcatctccacactcatctttgtcttcgccggagttggttccgccattgcttacggttaataactccgatccgatccctctttttcattttaattgttaacgaattctgcggttccaagtttgatttattgcttctgactcggaattatgccccgcataatatggttaatgcttattttgaattcatatcaaatagattgattcaggtttataagttataccaaaatcatatccttttactagatccgcttctgatcaagtaatatatattctatttttgtgtatttttactattgatcgatgtatgagagattttaaatttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="112230" stop="111178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111930" g_stop="111478" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E286806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111930" e_stop="111478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTA</genome_strand>
        <mrna_strand>CTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220598" ref_strand="+" ref_description="SGN-E220598 [cLEL-12-F8](-)">
      <seq>aaatgatttaaaccagaagttaaagttgcatgccgccgtaataatggcgcggcacagaaaaagaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggcttgaaagactggggggagtatcttgtacgcgaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttctagaatctaggttcaatagtttgtttttttctgttactgatagtatgttcttgtagttagttgtgttgaatcgccattatactctaggttgtttgattgaagctcaaagttgttattctgtgtgtgaccatgtaccctgaaagccacacatgcctcttttttttgaactcaagaaattcatgtcctgcattaaaaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116990" stop="68127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116690" g_stop="116666" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115939" g_stop="115902" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="63" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115762" g_stop="115366" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="460" r_length="397" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E220598" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116690" e_stop="116666"/>
          <exon e_start="115939" e_stop="115902"/>
          <exon e_start="115762" e_stop="115366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGATTTAAACCAGAAGTTAAAGGTATATCTTTCAAGGTGTTAATTTTTTATTCTGGTTAATTTTGTCGGCAATTTCTTTATTGATTGTCTCTCTATTTCCAGTAATGCTGTGTTCAAATACTTTGACTATTCGCTCTAGTGCTGCTGCTTCCTTGCTTTTCCTTCCCCCACTGACCCCTCCACTTTCTTTTCTCATAAAAAGCAATTTATTTTATCGCAAGCGAGAGCCTAAAGTACAAGGCACCTGGTAGAGAATCATACAGTTAGAAATGTTGCAACCTCTTTTGAAAAGTGAAACAGTTTCCCTCTCCACCAAGAGTAAATATGATAGTAACTCATTCTCACCTTCTGCTTTCCAACTTCATATGTTTGGGAACTTGTTTCTTCTGTTGCATTATGCTTGCTGGTGCTTTTTTGTGGTGTTCATTTGTTTTGTTCTGGTATCCAGTATTAAATAATTGAAGATTATGCTTCAGCTCATTCAAGTACGTTTTATCTTTTATAGCTACTTTCAAGAAAGGCTTGACCCCTTAAAACTGTTTGTAGGCTTGCACTAGGTGGCAGTTACTTCTCTAGATGTTTTCTATTGTCTCTAGTGGCCTTTTTCCTTTTACATAGCTAATACCAGAATGCTTGTATAGCTTATCCATGACTGTCGTGGTGAAAATTGCTAAACTTGTATTGGTTTATTTTTGTTATCTTCTTTATTTGATGAGTTCCTGATAAGCCTTTTCTGCCCCTTATGCAGTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAACATTATGGATTTCTT</genome_strand>
        <mrna_strand>AAATGATTTAAACCAGAAGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATGCCGCCGTAATAATGGCGCGGCACAGAAAAAG...........................................................................................................................................AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGAAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAAAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAAAAACAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239345" ref_strand="+" ref_description="SGN-E239345 [cLEL-9-P9](-)">
      <seq>gctatttctaagggaattttttacctgcatttgttattccttagcctttctagaggtgatcaccaatgcgttcattgaagctggtcttgttcttgaaaatgatttaaaccagaagttaaagttgcatgccaccgtaatgaatgcgcggcacagaaaaagaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggcttggaagactggggggagtatcttgtacgcgaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttctagaatctaggttcaatagtttgtttttttctgttactgatagtatgttcttgtagttagttgtgttgaatcgccattatactctaggttgtttgattgaagctcagagttgttattctgtgtgtgaccatgtaccctgaaagccacacatgcctcttttttttgcactcaagaaattcatgtcctgcattaagaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="117086" stop="115079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116786" g_stop="116666" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115939" g_stop="115902" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="159" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115762" g_stop="115380" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="542" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E239345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116786" e_stop="116666"/>
          <exon e_start="115939" e_stop="115902"/>
          <exon e_start="115762" e_stop="115380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAGGTATATCTTTCAAGGTGTTAATTTTTTATTCTGGTTAATTTTGTCGGCAATTTCTTTATTGATTGTCTCTCTATTTCCAGTAATGCTGTGTTCAAATACTTTGACTATTCGCTCTAGTGCTGCTGCTTCCTTGCTTTTCCTTCCCCCACTGACCCCTCCACTTTCTTTTCTCATAAAAAGCAATTTATTTTATCGCAAGCGAGAGCCTAAAGTACAAGGCACCTGGTAGAGAATCATACAGTTAGAAATGTTGCAACCTCTTTTGAAAAGTGAAACAGTTTCCCTCTCCACCAAGAGTAAATATGATAGTAACTCATTCTCACCTTCTGCTTTCCAACTTCATATGTTTGGGAACTTGTTTCTTCTGTTGCATTATGCTTGCTGGTGCTTTTTTGTGGTGTTCATTTGTTTTGTTCTGGTATCCAGTATTAAATAATTGAAGATTATGCTTCAGCTCATTCAAGTACGTTTTATCTTTTATAGCTACTTTCAAGAAAGGCTTGACCCCTTAAAACTGTTTGTAGGCTTGCACTAGGTGGCAGTTACTTCTCTAGATGTTTTCTATTGTCTCTAGTGGCCTTTTTCCTTTTACATAGCTAATACCAGAATGCTTGTATAGCTTATCCATGACTGTCGTGGTGAAAATTGCTAAACTTGTATTGGTTTATTTTTGTTATCTTCTTTATTTGATGAGTTCCTGATAAGCCTTTTCTGCCCCTTATGCAGTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</genome_strand>
        <mrna_strand>GCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG...........................................................................................................................................AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGCACTCAAGAAATTCATGTCCTGCATTAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239007" ref_strand="+" ref_description="SGN-E239007 [cLEL-9-P9](-)">
      <seq>gttgcatgccaccgtaatgaatgcgcggcacagaaaaagaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggcttggaagactggggggagtatcttgtacgcgaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttctagaatctaggttcaatagtttgtttttttctgttactgatagtatgttcttgtagttagttgtgttgaatcgccattatactctaggttgtttgattgaagctcagagttgttattctgtgtgtgaccatgtaccctgaaagccacacatgcctcttttttttgaactcaagaaattcatgtcctgcattaagcaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116240" stop="115079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115940" g_stop="115902" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115762" g_stop="115380" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="422" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="436"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E239007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115940" e_stop="115902"/>
          <exon e_start="115762" e_stop="115380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</genome_strand>
        <mrna_strand>GTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG...........................................................................................................................................AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220463" ref_strand="+" ref_description="SGN-E220463 [cLEL-12-F8](-)">
      <seq>aaggttgattcctttgatgcacgaaagatttttggtcaatatggcttggaagactggggggagaatcttgtacgcaaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttctagaatctaggttcaatagtttgtttttttctgttactgatagtatgttcttgtagttagttgtgttgaatcgccattatactctaggttgtttgattgaagctcagagttgttattctgtgtgtgaccatgtaccctgaaagccacacatgcctcttttttttgaactcaagaaattcatgtcctgcattaagcaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116052" stop="115079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115752" g_stop="115380" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="387"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E220463" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115752" e_stop="115380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</genome_strand>
        <mrna_strand>AAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGAATCTTGTACGCAAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219186" ref_strand="+" ref_description="SGN-E219186 [cLEL-11-B22](-)">
      <seq>aaaaaaggttgattcctttaatgcacgaaagatttttggtcaatatggcttggaagactggggggagtatcttgtacgcaaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcctaaagagatgcaacttgattgagttctagaatctaggttcaatagtttgtttttttctgttactgatagtatgttcttgtagttagttgtgttgaatcgccattatactctaggttgtttgattgaagctcagagttgttattctgtgtgtgaccatgtaccctgaaagccacacatgcctcttttttttcacactcaagaaattcatgtcctgcattaaacatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="116056" stop="115079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115756" g_stop="115385" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="392"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E219186" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115756" e_stop="115385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGA-ACTCAAGAAATTCATGTCCTGCATTAA</genome_strand>
        <mrna_strand>AAAAAAGGTTGATTCCTTTAATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCAAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTAAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTCACACTCAAGAAATTCATGTCCTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617318" ref_strand="+" ref_description="SGN-E617318 [90795]">
      <seq>aagtcctctacctcagaatcaaaggcttctaaacttttagatttgggaattgagaaatccatctttattaaaccaaaaacattccacttgactgtgctcatgctgaagctttggaataaggaccgaattgaagctgccgctgaagtttggcggagtgtctcaccaaaagtaattgatgctttggagagccgacctgtgtctataagactgaacggtttggagtgcatgaaaggttctccagcaaaagctcgtgttggtatatgctcctgtggaagtaattggtggtgaagaccgacttttacgtgcctgtcaggtgatcaccaatgcgttcattgaagctggtcttgttcttgaaaatgatttaaaccagaagttaaagttgcatgccaccataatgaatgcgcggcacagaaaaagcaaaaaaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggctcggaagactggggggagtatcttatccccgaagctcatctttcacaaaggtttgtattcgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttctagaatctaggtttatagtttgtttgttttctgttattggtagtatgttcttgtagttaggttgtgttgaatcgccagtatactctagagccgtttgattgaagctgagagttgttattctgtgtgtgaccaatgtaccctgaaagccacatatgcctctcttttttcttaactcaatatcatctgtagaattcaaggaaattcatgtccctgcatttagcaaacatgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119186" stop="115104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118886" g_stop="118847" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118846" i_stop="118625" i_length="222">
            <donor d_prob="0.987" d_score="0.95"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118624" g_stop="118512" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="153" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118511" i_stop="118413" i_length="99">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118412" g_stop="118347" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="219" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116934" g_stop="116844" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="311" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116733" g_stop="116666" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="379" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115939" g_stop="115902" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="417" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115901" i_stop="115769" i_length="133">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115768" g_stop="115414" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="775" r_length="358" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E617318" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118886" e_stop="118847"/>
          <exon e_start="118624" e_stop="118512"/>
          <exon e_start="118412" e_stop="118347"/>
          <exon e_start="116934" e_stop="116844"/>
          <exon e_start="116733" e_stop="116666"/>
          <exon e_start="115939" e_stop="115902"/>
          <exon e_start="115768" e_stop="115414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAGGTATAAAATCTAAAAGTACTATGCTACTTTTATCAAAAGATAAAAATGGATTCGTGCACTGTGTTGTTGTAAAAAACTTCTGTACTGAAAATTCTCATCTCTGCTTTTCCTTCCGAAGTTCATTATAATATCTATCCCTGTCTTTCCACCTAGAATGGGAGCATTATTTCCTTCTTATGTCTTAACTGTGACCAGATTGACGAATGTTTTTCTCCTCAACAGATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGGGTAGATGTTTGTAATTGCATGGTCATTTTCTTTTGTTGTAATATCATTTTCTGTGTCTAACTTTTCAAAATATTTTTTTTTTATTTCATGTCTTTCCAGAGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTGGTAAGTCTTGGCAGAATAGTCATTACACTTACTCTTTATGATCCCTTAAACTTCTACTGAAGGTTCATGTATGCCCTATTACAAGATTCAAACATGTACTTTAGAATTTCAAAAGACATGCTAAGAGAAGTGATCAAAACACATCTGCCACTACTCATCCCAGCTCATGTCAGTAGGGGCCAAAACATGAAAATGAAAGGACTCTGTAAATTGAGCAAAAAGGCGATGAATTGTTTTCTTGCTGTCGCGGACATACTTAACTGTGAAAGTATTAATGGTTATCTTGAATCTTGATGCAGCAAACATATGTCGAATCTAGGATTCATTGATTAAAAGTACGATGAGTGAAAGGAAACAAGGGAAGGATAGCCCTAGCGGTAAGGGTTCTTCACCTACCACAAGATTGTTAGTTTTAGTTATGAAGAGAGCAAGGTTGGACAGGGTCACTGCTGGGATCCTTTGTAGGGTAGACAGTGGGCTCCATTTGATGAAAGACATCTTAGAGCAAATTGCCTTTCAGTACTCGTAGTTTTTAGTATTATGAGCCTAAGATTATTGAAACATTCATATAGGAAGTGTTAGAAACTAATGTTTTTTTATTATTTAGGTTCATATGGATGAAGATCATCTATATCTTTTTTTCCCCAGTATTAAACATTCTTTATAATTTGACTTCCACTCTGTCTTTTACTTCAAAAGTAAAATTATAGATCTCATACTTGAGATATTTGAAATACCCAACTATAAGGTTCAAATATATTTAGTTTCCATCTAACATGCTTGTTCTTTTTTTTCTTTTTATTAGTGTACATGTTTTGAACGTGATACTCTGTTATATTTGCCATGCACCACAAAATTTCAATAGTTGATTTTAGTTGTACTTTTCAGTAACTTTGTTGGATTTTCCCATTTATTTTTAATATATTTTATAGAAACTGTCACCATTGAAGAAGAAACATAGATCAGGCTTGCTGACTTTATACGTTTAAAAGGACAATTACAGAAAATGACTACACGTAAGAGAAAGTGGAAATGTACAATAGCAAAACGACTTCTTTTTTTTTTTTTAAAAAAAAAAGAACTTAGAAACAAACAAAGGGTAATTGTGTATTAGAGCCTTCAAATATGCCACAGGTAGCAATGTTGACCTTCTTGGAATTAGGTGAAAGCAAATGAACAAAATGATTAAGTACTGCAAAAAGAAGAGCATTTGCTCGTATATTATATTTATAATTTCCTTTTCACGTGATACCAATCTCTTTCTGTAAATGCTTCTTCAATTGGTTGGTCTCTGTACGTGTGTGTGAGAGAAACTTTAAATCATGCTGGATGTTTGTTGACTGTTGCTTCTAATGATAGTTCACAAGTTCACCATTTTTCTGGCTGGAACTCAGATTGTTGTTATCTTGCAGGAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTT-GTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTCGTATCCATAATTTCTGGTGTCGTCTTCCCTCACCCTACCCATTTCTTAAATCTGTCTGCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAGGTATATCTTTCAAGGTGTTAATTTTTTATTCTGGTTAATTTTGTCGGCAATTTCTTTATTGATTGTCTCTCTATTTCCAGTAATGCTGTGTTCAAATACTTTGACTATTCGCTCTAGTGCTGCTGCTTCCTTGCTTTTCCTTCCCCCACTGACCCCTCCACTTTCTTTTCTCATAAAAAGCAATTTATTTTATCGCAAGCGAGAGCCTAAAGTACAAGGCACCTGGTAGAGAATCATACAGTTAGAAATGTTGCAACCTCTTTTGAAAAGTGAAACAGTTTCCCTCTCCACCAAGAGTAAATATGATAGTAACTCATTCTCACCTTCTGCTTTCCAACTTCATATGTTTGGGAACTTGTTTCTTCTGTTGCATTATGCTTGCTGGTGCTTTTTTGTGGTGTTCATTTGTTTTGTTCTGGTATCCAGTATTAAATAATTGAAGATTATGCTTCAGCTCATTCAAGTACGTTTTATCTTTTATAGCTACTTTCAAGAAAGGCTTGACCCCTTAAAACTGTTTGTAGGCTTGCACTAGGTGGCAGTTACTTCTCTAGATGTTTTCTATTGTCTCTAGTGGCCTTTTTCCTTTTACATAGCTAATACCAGAATGCTTGTATAGCTTATCCATGACTGTCGTGGTGAAAATTGCTAAACTTGTATTGGTTTATTTTTGTTATCTTCTTTATTTGATGAGTTCCTGATAAGCCTTTTCTGCCCCTTATGCAGTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTT-TTTTCTGTTACTGATAGTATGTTCTTGTAGTTA-GTTGTGTTGAATCGCCATTATACTCTAG-GTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACC-ATGTACCCTGAAAGCCACACATGCCTCTTTTTTTT</genome_strand>
        <mrna_strand>AAGTCCTCTACCTCAGAATCAAAGGCTTCTAAACTTTTAG..............................................................................................................................................................................................................................ATTTGGGAATTGAGAAATCCATCTTTATTAAACCAAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAATTGAAGCTGCCGCTGAAGTTTGGCGG...................................................................................................AGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAACGGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACCGACTTTTACGTGCCTGTC..............................................................................................................AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATGCCACCATAATGAATGCGCGGCACAGAAAAAG.....................................................................................................................................CAAAAAAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTCGGAAGACTGGGGGGAGTATCTTATCCCCGAAGCTCATCTTTCACAAAGGTTTGTATTCGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTT-TATAGTTTGTTTGTTTTCTGTTATTGGTAGTATGTTCTTGTAGTTAGGTTGTGTTGAATCGCCAGTATACTCTAGAGCCGTTTGATTGAAGCTGAGAGTTGTTATTCTGTGTGTGACCAATGTACCCTGAAAGCCACATATGCCTCTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423485" ref_strand="-" ref_description="SGN-E423485 [STM-42-I5]">
      <seq>aaagtaattgatgctttggagagccgacctgtgtctataagactgaagggtttggagtgcatgaaaggttctccagcaaaagctcgtgttgtatatgctcctgtggaagtaattggtggtgaagaccgacttttacgtgcctgtcaggtgatcaccaatgcgttcattgaagctggtcttgttcttgaaaatgatttaaaccagaagttaaagttgcatgccaccataatgaatgcgcggcacagaaaaagtaaaaaaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggctcggaagactggggggagtatcttatccccgaagctcatctttcacaaaggtttgtattcgatgacgatggctattaccattgctgtgcttccatcccatttcctgaagagatgcaacttgattgagttgtagaatctaggtttatagtttgtttgttttctgttattggtagtatgttcttagagttagttgtgttgaatcgccagtatactctaggccgtttgattgaagctgagagttgtgttattctgtgtgtgaccaatgtaccctgaaagccacatatgcctctctttttttttaactcaatatcacctgtagaattcaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="118700" stop="115104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118400" g_stop="118347" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116934" g_stop="116844" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="145" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116733" g_stop="116666" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="213" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115939" g_stop="115902" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="251" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115901" i_stop="115769" i_length="133">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115768" g_stop="115414" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="609" r_length="358" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="655"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E423485" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423485" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118400" e_stop="118347"/>
          <exon e_start="116934" e_stop="116844"/>
          <exon e_start="116733" e_stop="116666"/>
          <exon e_start="115939" e_stop="115902"/>
          <exon e_start="115768" e_stop="115414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTGGTAAGTCTTGGCAGAATAGTCATTACACTTACTCTTTATGATCCCTTAAACTTCTACTGAAGGTTCATGTATGCCCTATTACAAGATTCAAACATGTACTTTAGAATTTCAAAAGACATGCTAAGAGAAGTGATCAAAACACATCTGCCACTACTCATCCCAGCTCATGTCAGTAGGGGCCAAAACATGAAAATGAAAGGACTCTGTAAATTGAGCAAAAAGGCGATGAATTGTTTTCTTGCTGTCGCGGACATACTTAACTGTGAAAGTATTAATGGTTATCTTGAATCTTGATGCAGCAAACATATGTCGAATCTAGGATTCATTGATTAAAAGTACGATGAGTGAAAGGAAACAAGGGAAGGATAGCCCTAGCGGTAAGGGTTCTTCACCTACCACAAGATTGTTAGTTTTAGTTATGAAGAGAGCAAGGTTGGACAGGGTCACTGCTGGGATCCTTTGTAGGGTAGACAGTGGGCTCCATTTGATGAAAGACATCTTAGAGCAAATTGCCTTTCAGTACTCGTAGTTTTTAGTATTATGAGCCTAAGATTATTGAAACATTCATATAGGAAGTGTTAGAAACTAATGTTTTTTTATTATTTAGGTTCATATGGATGAAGATCATCTATATCTTTTTTTCCCCAGTATTAAACATTCTTTATAATTTGACTTCCACTCTGTCTTTTACTTCAAAAGTAAAATTATAGATCTCATACTTGAGATATTTGAAATACCCAACTATAAGGTTCAAATATATTTAGTTTCCATCTAACATGCTTGTTCTTTTTTTTCTTTTTATTAGTGTACATGTTTTGAACGTGATACTCTGTTATATTTGCCATGCACCACAAAATTTCAATAGTTGATTTTAGTTGTACTTTTCAGTAACTTTGTTGGATTTTCCCATTTATTTTTAATATATTTTATAGAAACTGTCACCATTGAAGAAGAAACATAGATCAGGCTTGCTGACTTTATACGTTTAAAAGGACAATTACAGAAAATGACTACACGTAAGAGAAAGTGGAAATGTACAATAGCAAAACGACTTCTTTTTTTTTTTTTAAAAAAAAAAGAACTTAGAAACAAACAAAGGGTAATTGTGTATTAGAGCCTTCAAATATGCCACAGGTAGCAATGTTGACCTTCTTGGAATTAGGTGAAAGCAAATGAACAAAATGATTAAGTACTGCAAAAAGAAGAGCATTTGCTCGTATATTATATTTATAATTTCCTTTTCACGTGATACCAATCTCTTTCTGTAAATGCTTCTTCAATTGGTTGGTCTCTGTACGTGTGTGTGAGAGAAACTTTAAATCATGCTGGATGTTTGTTGACTGTTGCTTCTAATGATAGTTCACAAGTTCACCATTTTTCTGGCTGGAACTCAGATTGTTGTTATCTTGCAGGAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTCGTATCCATAATTTCTGGTGTCGTCTTCCCTCACCCTACCCATTTCTTAAATCTGTCTGCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAGGTATATCTTTCAAGGTGTTAATTTTTTATTCTGGTTAATTTTGTCGGCAATTTCTTTATTGATTGTCTCTCTATTTCCAGTAATGCTGTGTTCAAATACTTTGACTATTCGCTCTAGTGCTGCTGCTTCCTTGCTTTTCCTTCCCCCACTGACCCCTCCACTTTCTTTTCTCATAAAAAGCAATTTATTTTATCGCAAGCGAGAGCCTAAAGTACAAGGCACCTGGTAGAGAATCATACAGTTAGAAATGTTGCAACCTCTTTTGAAAAGTGAAACAGTTTCCCTCTCCACCAAGAGTAAATATGATAGTAACTCATTCTCACCTTCTGCTTTCCAACTTCATATGTTTGGGAACTTGTTTCTTCTGTTGCATTATGCTTGCTGGTGCTTTTTTGTGGTGTTCATTTGTTTTGTTCTGGTATCCAGTATTAAATAATTGAAGATTATGCTTCAGCTCATTCAAGTACGTTTTATCTTTTATAGCTACTTTCAAGAAAGGCTTGACCCCTTAAAACTGTTTGTAGGCTTGCACTAGGTGGCAGTTACTTCTCTAGATGTTTTCTATTGTCTCTAGTGGCCTTTTTCCTTTTACATAGCTAATACCAGAATGCTTGTATAGCTTATCCATGACTGTCGTGGTGAAAATTGCTAAACTTGTATTGGTTTATTTTTGTTATCTTCTTTATTTGATGAGTTCCTGATAAGCCTTTTCTGCCCCTTATGCAGTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTT-TTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAG-T-TGTTATTCTGTGTGTGACC-ATGTACCCTGAAAGCCACACATGCCTCTTTTTTTT</genome_strand>
        <mrna_strand>AAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACCGACTTTTACGTGCCTGTC..............................................................................................................AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATGCCACCATAATGAATGCGCGGCACAGAAAAAG.....................................................................................................................................TAAAAAAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTCGGAAGACTGGGGGGAGTATCTTATCCCCGAAGCTCATCTTTCACAAAGGTTTGTATTCGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTGTAGAATCTAGGTT-TATAGTTTGTTTGTTTTCTGTTATTGGTAGTATGTTCTTAGAGTTAGTTGTGTTGAATCGCCAGTATACTCTAGGCCGTTTGATTGAAGCTGAGAGTTGTGTTATTCTGTGTGTGACCAATGTACCCTGAAAGCCACATATGCCTCTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717984" ref_strand="+" ref_description="SGN-E717984 [FC03BC06]">
      <seq>gtccaggcagttaaaagccgatatcttgactactctcactttgtatcacttccattggccatacatcctgaattggttaacaagctcatcaacttccagaactcagttcttggaaatacagtagttaatgaagatgaaaatttggaatgtgattcaagtggtaaaacttctgatgcggaaggtgagcagaacttgagcgaaccacggattgcggtggaactcaaaactgaagattctaatgatcgtgttaaaattgataaaaccaacataccactcgtgagttactcggctaaagtatctaagtcctctacctcagattcaaaggcttctaaactattagatttaggaattgagaaatccatctttattaaacccaaaacattccacttgactgtgctcatgctgaagctttggaataaggaccgagttgaagctgctgctgaagttttgcggagtgtctcaccaaaagtaattgatgctttggagagccgacctgtgtctataagactgaagggtttggagtgcatgaaaggttctccagcaaaagctcgtgttgtatatgctcctgtggaagtaattggtggtgaagacagacttttacgtgcctgtcaggtgatcaccaatgcgttcattgaagctggtcttgttcttgaaaatgatttaaaccagaagttaaagttgcatgccaccgtaatgaatgcgcggcacagaaaaagaggatcaaaaaaggttgattcctttgatgcacgaaagatttttggtcaatatggcttgaaagactggggggagtatcttgtacgcgaagctcatctttcacaaaggtttgtgtttgatgacgatggctattaccattgctgtgcttccatcccatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119482" stop="115303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119180" g_stop="118847" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="340" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118846" i_stop="118625" i_length="222">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118624" g_stop="118512" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="453" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118511" i_stop="118413" i_length="99">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118412" g_stop="118347" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="519" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116934" g_stop="116844" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="610" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116733" g_stop="116666" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="678" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115939" g_stop="115902" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="716" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115762" g_stop="115603" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="876" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E717984" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119180" e_stop="118847"/>
          <exon e_start="118624" e_stop="118512"/>
          <exon e_start="118412" e_stop="118347"/>
          <exon e_start="116934" e_stop="116844"/>
          <exon e_start="116733" e_stop="116666"/>
          <exon e_start="115939" e_stop="115902"/>
          <exon e_start="115762" e_stop="115603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCAAAACTGAAGATTCTAATGATCGTGTTAAAATTGATAAAACCAACATACCACTCGTGAGTTACTCGGCTAAAGTATCTAAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAGGTATAAAATCTAAAAGTACTATGCTACTTTTATCAAAAGATAAAAATGGATTCGTGCACTGTGTTGTTGTAAAAAACTTCTGTACTGAAAATTCTCATCTCTGCTTTTCCTTCCGAAGTTCATTATAATATCTATCCCTGTCTTTCCACCTAGAATGGGAGCATTATTTCCTTCTTATGTCTTAACTGTGACCAGATTGACGAATGTTTTTCTCCTCAACAGATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGGGTAGATGTTTGTAATTGCATGGTCATTTTCTTTTGTTGTAATATCATTTTCTGTGTCTAACTTTTCAAAATATTTTTTTTTTATTTCATGTCTTTCCAGAGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTGGTAAGTCTTGGCAGAATAGTCATTACACTTACTCTTTATGATCCCTTAAACTTCTACTGAAGGTTCATGTATGCCCTATTACAAGATTCAAACATGTACTTTAGAATTTCAAAAGACATGCTAAGAGAAGTGATCAAAACACATCTGCCACTACTCATCCCAGCTCATGTCAGTAGGGGCCAAAACATGAAAATGAAAGGACTCTGTAAATTGAGCAAAAAGGCGATGAATTGTTTTCTTGCTGTCGCGGACATACTTAACTGTGAAAGTATTAATGGTTATCTTGAATCTTGATGCAGCAAACATATGTCGAATCTAGGATTCATTGATTAAAAGTACGATGAGTGAAAGGAAACAAGGGAAGGATAGCCCTAGCGGTAAGGGTTCTTCACCTACCACAAGATTGTTAGTTTTAGTTATGAAGAGAGCAAGGTTGGACAGGGTCACTGCTGGGATCCTTTGTAGGGTAGACAGTGGGCTCCATTTGATGAAAGACATCTTAGAGCAAATTGCCTTTCAGTACTCGTAGTTTTTAGTATTATGAGCCTAAGATTATTGAAACATTCATATAGGAAGTGTTAGAAACTAATGTTTTTTTATTATTTAGGTTCATATGGATGAAGATCATCTATATCTTTTTTTCCCCAGTATTAAACATTCTTTATAATTTGACTTCCACTCTGTCTTTTACTTCAAAAGTAAAATTATAGATCTCATACTTGAGATATTTGAAATACCCAACTATAAGGTTCAAATATATTTAGTTTCCATCTAACATGCTTGTTCTTTTTTTTCTTTTTATTAGTGTACATGTTTTGAACGTGATACTCTGTTATATTTGCCATGCACCACAAAATTTCAATAGTTGATTTTAGTTGTACTTTTCAGTAACTTTGTTGGATTTTCCCATTTATTTTTAATATATTTTATAGAAACTGTCACCATTGAAGAAGAAACATAGATCAGGCTTGCTGACTTTATACGTTTAAAAGGACAATTACAGAAAATGACTACACGTAAGAGAAAGTGGAAATGTACAATAGCAAAACGACTTCTTTTTTTTTTTTTAAAAAAAAAAGAACTTAGAAACAAACAAAGGGTAATTGTGTATTAGAGCCTTCAAATATGCCACAGGTAGCAATGTTGACCTTCTTGGAATTAGGTGAAAGCAAATGAACAAAATGATTAAGTACTGCAAAAAGAAGAGCATTTGCTCGTATATTATATTTATAATTTCCTTTTCACGTGATACCAATCTCTTTCTGTAAATGCTTCTTCAATTGGTTGGTCTCTGTACGTGTGTGTGAGAGAAACTTTAAATCATGCTGGATGTTTGTTGACTGTTGCTTCTAATGATAGTTCACAAGTTCACCATTTTTCTGGCTGGAACTCAGATTGTTGTTATCTTGCAGGAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTCGTATCCATAATTTCTGGTGTCGTCTTCCCTCACCCTACCCATTTCTTAAATCTGTCTGCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAGGTATATCTTTCAAGGTGTTAATTTTTTATTCTGGTTAATTTTGTCGGCAATTTCTTTATTGATTGTCTCTCTATTTCCAGTAATGCTGTGTTCAAATACTTTGACTATTCGCTCTAGTGCTGCTGCTTCCTTGCTTTTCCTTCCCCCACTGACCCCTCCACTTTCTTTTCTCATAAAAAGCAATTTATTTTATCGCAAGCGAGAGCCTAAAGTACAAGGCACCTGGTAGAGAATCATACAGTTAGAAATGTTGCAACCTCTTTTGAAAAGTGAAACAGTTTCCCTCTCCACCAAGAGTAAATATGATAGTAACTCATTCTCACCTTCTGCTTTCCAACTTCATATGTTTGGGAACTTGTTTCTTCTGTTGCATTATGCTTGCTGGTGCTTTTTTGTGGTGTTCATTTGTTTTGTTCTGGTATCCAGTATTAAATAATTGAAGATTATGCTTCAGCTCATTCAAGTACGTTTTATCTTTTATAGCTACTTTCAAGAAAGGCTTGACCCCTTAAAACTGTTTGTAGGCTTGCACTAGGTGGCAGTTACTTCTCTAGATGTTTTCTATTGTCTCTAGTGGCCTTTTTCCTTTTACATAGCTAATACCAGAATGCTTGTATAGCTTATCCATGACTGTCGTGGTGAAAATTGCTAAACTTGTATTGGTTTATTTTTGTTATCTTCTTTATTTGATGAGTTCCTGATAAGCCTTTTCTGCCCCTTATGCAGTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAGGTGTCATTTTTTAATCTTTTATTGCATATCTTGTTTGTTTGTTGGCTTAAAGTCTATCGTGATTTATGCTATCAGTTGCATAATGTCCATTACTTTTAAGGTTAGGACTGACTTACTGTTCTCCAATTGATAGCAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCT</genome_strand>
        <mrna_strand>GCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCAAAACTGAAGATTCTAATGATCGTGTTAAAATTGATAAAACCAACATACCACTCGTGAGTTACTCGGCTAAAGTATCTAAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAG..............................................................................................................................................................................................................................ATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGG...................................................................................................AGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTC..............................................................................................................AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG...........................................................................................................................................AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGAAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342057" ref_strand="+" ref_description="SGN-E342057 [cTOF-10-N1]">
      <seq>ctgtttctactcaatcaaggtcaactgaaggtggtttaggtgatgagaagcatgattttggaggtcaagtgcaagaaattaaatgcactgtttcttcgtatgagtcaacagttcagaaggcagtgcaggttagtgaaggcattgatctagaaggacgagcaacaccttcagctgatgatgaatcactttcagcagctcagaagcattcagttacagtcaaggcaggggcttccttgatgcgttttatcagagggaaaggaggtgcaacacagaggacaattgaggaggaaatgaaagtaaaaatcatacttccattctcgcggaatgaggattgcctcatcgtagaaggcaattctgctgaaagtgtggcaagagcatcagatagagtccaagctgtaattgatgaggcagttaaaagccgatatcttgactactctcactttgtatcacttccattggccatacatcctgaattggttaacaagctcatcaacttccagaactcagttcttggaaatacagtagttaatgaagatgaaaatttggaatgtgattcaagtggtaaaacttctgatgcggaaggtgagcagaacttgagcgaaccacggattgcggtggaactcanaactgaagattctaatgatcgtngtaaaattgataaaaccaacataccactcgtgagtttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123545" stop="118600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123245" g_stop="123216" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123003" g_stop="122813" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="221" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121283" g_stop="121246" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="259" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76">
            <donor d_prob="0.362" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121169" g_stop="121090" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="339" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119915" g_stop="119848" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="407" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119847" i_stop="119181" i_length="667">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119180" g_stop="118900" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="689" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E342057" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123245" e_stop="123216"/>
          <exon e_start="123003" e_stop="122813"/>
          <exon e_start="121283" e_stop="121246"/>
          <exon e_start="121169" e_stop="121090"/>
          <exon e_start="119915" e_stop="119848"/>
          <exon e_start="119180" e_stop="118900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTCTACTCAATCAAGGTCAACTGAAGGTGAGTGTTCCTCACTTGTTAATATTAGATTGAGTTGTATTGGAAATTCTAGGTTGTTAAGCTTTCTGTACTTTTAGTTGATATTGGAAGTTATTAGGTATCCGAATAATTGAAAAATTTGTATATTGTTATGTCAGGAATATGATCTTATGTAGTATGTAGAATACACTGTTAAAGATGTGGAAGATTAATATTGGATTTTGGAAGTTCAGGTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCAGTAGGTTGCTTCTTTATTTATGGGTGATTTTGATTGATTCAGCTTTTGTGCATTGATTAAGTTATTATTCAATCATAATGATATTTGTAGCCTGATTTTTGCTTTTGATAACGTACTGTATGATTTCTATGACCTACTTATGTTGTCCCTGGCCCTGCTATATTAAGTGATCAGTCAGTTGATCAATCGATGACTCGACAATCACAAATTAGTTGGATTTGGTGATGATTTATATATTCTGCTCCATTTGGGCAATTTCATTCTATTAGGATGTCTTTTAACACACCTTAAAGGTTCATTGTAACTGAAAACTCTCTAAATCTCGTGCTCATCCCTATGGATCTAATGTAGGTGTAGAAACATTGGTTAACCCTTAAATCACATAGTTGATTGTCTGGATAGATCCTTTGTTTTTTATTCTGCATTGATTTTAAGAGATCGTAGATCTTTTGAGATAATCTTCTTACGATTATATTTAGATCTATAAACACTTTCAATTGCCATAGCATTGCACCGACAAAGTAGTGCATTTGGATGTCTATACTGGATAGATCTTTTGTTTCATCCTACATTGATTTTTAGAGATCATAGATCTTTTTTTGTGATTACCTTCATGTGATTTTAGATCTATAAACACTTCCAATCGCCATAGTGTTGCACCTACAAAGTAGTACATTTGGATGTCTATGTAGGGGAGCAAAACCATCTTGGTTACCCTTCCTCATTTATTCTTCAGGTGTCCTACTTGTATCCTCGTCTGATGTAGTTATTTGTAATCTTATCAGTATTTAGTGATATTACGGTTTTTTATTTTCCGATTTCCAAGCTTAAGCTCCATTTAGGTCTCCTACCATTGTTTGTTGACCAAAATGTTGGAGGTATTCTTTGATAATGTGCTTTGATCTATTCTTGTCACTAGTTATGATATTTGGCTTTTGGTTTCTCCTATGTGATTTATTCTTTATATTAGTAGGTCTTTCGAATGGGGGATTAGCGTCCACTTCTCTTAATGTTGTTACTACTTGTGAAAGCCACTATTGCATGTTTCTTGCAGAGTGATTGGAGCTATATTCCTTTTGTATTGGTATATATTGAATATGGGTGAATACTAATTTGAAATCCAAAACAGCTATGTTCAACCTTTTTCGTTTTTAATATAGTGTCCATATTGCAGTCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAGGTTTGCACCAACATTTTTTTTTTCCGTGCTAGAAGACAAATAAGGCATAAAAGGAATATTACTTTTTTATCTGTCGAACTTTTAGAGCCTATAAACTGTGGTAACATGTAAGTATCTGTTTTTGTTAAAAGCTTTTAATTTTAATTTTAATTTTTTTACGTCTAAAAATGGTCATGCTAATGATTATTGATGAAATGTAGCTGCTGCTTCATAGCACCAACACAAAGTACCCACAATATATCTTACTGTATGTCACGCCTTGCCTTAGGAGCTTTTTCCTGTCATAATTTTGGTCCAGGTACTACTTGATTTTGACCTTGAACCTAGTGTGAGCATTTGAAGTTGCTTTACAATTACCTTTTGACTGCTGTCTTTCTTCTCTCTCAACTTAAACTAACATATATGTGTTTACTAGAACTCTTAGCTGTTCCTGGCACTTACATGCAACTAGTAATTCAAAACTTTCAAATAATATGCTTGTCTAATATTATTTATATCTAGAATGCTCAAGTGTGATCCGTCTTACTTGCTTTTGTCATGAGGAATCTCTCTCAACCGTGGCTCGGCATTCTTTCTTGTGTTATGAAGGATCTTACTATTTTCTTCATCTCATTTTTTTTTATTTATTGTCACTCATAAGTGTAATTTGTGTCTCCTTCTCCTGTAGGCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCAAAACTGAAGATTCTAATGATCGTGTTAAAATTGATAAAACCAACATACCACTCGTGAG-TTACTC</genome_strand>
        <mrna_strand>CTGTTTCTACTCAATCAAGGTCAACTGAAG....................................................................................................................................................................................................................GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGG............................................................................AGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCANAACTGAAGATTCTAATGATCGTNGTAAAATTGATAAAACCAACATACCACTCGTGAGTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579493" ref_strand="+" ref_description="SGN-E579493 [86622]">
      <seq>cttaccggtcttttttaaggtgcacacttaccatttgcaagcgttgatcttgcttggaaattcacaaaggttcatgtagtaccgaagcgcacacaacacttccagaggtgtttttcttcatgcggtttcaattataactcgaggacgcatattgaaggaggtttacgtgttgacatggaccggaaaaaacagaaaatggttgctaaaacatggagacctgtttctactcaatcaaggtctgctgaaggtggtttaggtgatgagaagcatgattttggaggtcaagtgcaagaaattaaatgcaccgtctcttcgtatgagtcaacagttcagaaggcagtgcaggttagtgaaggcattgacctagaaggacgagcaacaccttctgctgatgatgaatcgctttcagcagctcagaagcattcagttacagtcaaggcaggggcttccttgatgcgttttgtcagagggaaagggtatgactttctgtgtggattcttgtgtatgctaaaaacgaggggctaatacgttgctttgatattctgcttatagaggtgcaacacagaggacaattgaggaggaaatgaaagtaaaaatcataattccattctcgcggaatgaggattgcctcatcatagaaggcagttctgctgaaaagtgtggcaagagcatcagatagagtccaagctgtaattgatgagacagttaaaagccgaaatcttgactactctcactttgtatcacttccattggccatacatcctgaggctggtcaacaagctcatcaactttccagaactcagttccttggaattacagtagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123927" stop="118759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123627" g_stop="123595" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123594" i_stop="123520" i_length="75">
            <donor d_prob="0.527" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123519" g_stop="123447" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="105" r_length="72" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123357" g_stop="123216" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="247" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123003" g_stop="122813" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="438" r_length="191" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121283" g_stop="121090" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="632" r_length="194" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119915" g_stop="119848" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="701" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119847" i_stop="119181" i_length="667">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119180" g_stop="119059" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="826" r_length="125" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E579493" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123627" e_stop="123595"/>
          <exon e_start="123519" e_stop="123447"/>
          <exon e_start="123357" e_stop="123216"/>
          <exon e_start="123003" e_stop="122813"/>
          <exon e_start="121283" e_stop="121090"/>
          <exon e_start="119915" e_stop="119848"/>
          <exon e_start="119180" e_stop="119059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCGGTCTTTTTTAAGGTGCACACTTACCAGTACCATTTGCAAGTCTTTTCATTCTCTCAGTGAATTAGAGATTTATAACGTAGCTTTTTTCTCTTACCAATCGTCTTCCACAGCGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAGGTACACCAATCGCTATTTCTGTATAGAAATTAAATTTAACAAGGAAACGAAAAGGTAATGTTGTAATTGGGTAATTGTAGTTGTTGCAGAGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAGGTGAGTGTTCCTCACTTGTTAATATTAGATTGAGTTGTATTGGAAATTCTAGGTTGTTAAGCTTTCTGTACTTTTAGTTGATATTGGAAGTTATTAGGTATCCGAATAATTGAAAAATTTGTATATTGTTATGTCAGGAATATGATCTTATGTAGTATGTAGAATACACTGTTAAAGATGTGGAAGATTAATATTGGATTTTGGAAGTTCAGGTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCAGTAGGTTGCTTCTTTATTTATGGGTGATTTTGATTGATTCAGCTTTTGTGCATTGATTAAGTTATTATTCAATCATAATGATATTTGTAGCCTGATTTTTGCTTTTGATAACGTACTGTATGATTTCTATGACCTACTTATGTTGTCCCTGGCCCTGCTATATTAAGTGATCAGTCAGTTGATCAATCGATGACTCGACAATCACAAATTAGTTGGATTTGGTGATGATTTATATATTCTGCTCCATTTGGGCAATTTCATTCTATTAGGATGTCTTTTAACACACCTTAAAGGTTCATTGTAACTGAAAACTCTCTAAATCTCGTGCTCATCCCTATGGATCTAATGTAGGTGTAGAAACATTGGTTAACCCTTAAATCACATAGTTGATTGTCTGGATAGATCCTTTGTTTTTTATTCTGCATTGATTTTAAGAGATCGTAGATCTTTTGAGATAATCTTCTTACGATTATATTTAGATCTATAAACACTTTCAATTGCCATAGCATTGCACCGACAAAGTAGTGCATTTGGATGTCTATACTGGATAGATCTTTTGTTTCATCCTACATTGATTTTTAGAGATCATAGATCTTTTTTTGTGATTACCTTCATGTGATTTTAGATCTATAAACACTTCCAATCGCCATAGTGTTGCACCTACAAAGTAGTACATTTGGATGTCTATGTAGGGGAGCAAAACCATCTTGGTTACCCTTCCTCATTTATTCTTCAGGTGTCCTACTTGTATCCTCGTCTGATGTAGTTATTTGTAATCTTATCAGTATTTAGTGATATTACGGTTTTTTATTTTCCGATTTCCAAGCTTAAGCTCCATTTAGGTCTCCTACCATTGTTTGTTGACCAAAATGTTGGAGGTATTCTTTGATAATGTGCTTTGATCTATTCTTGTCACTAGTTATGATATTTGGCTTTTGGTTTCTCCTATGTGATTTATTCTTTATATTAGTAGGTCTTTCGAATGGGGGATTAGCGTCCACTTCTCTTAATGTTGTTACTACTTGTGAAAGCCACTATTGCATGTTTCTTGCAGAGTGATTGGAGCTATATTCCTTTTGTATTGGTATATATTGAATATGGGTGAATACTAATTTGAAATCCAAAACAGCTATGTTCAACCTTTTTCGTTTTTAATATAGTGTCCATATTGCAGTCGTAGAAGGCAATTCTGCTG-AAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAGGTTTGCACCAACATTTTTTTTTTCCGTGCTAGAAGACAAATAAGGCATAAAAGGAATATTACTTTTTTATCTGTCGAACTTTTAGAGCCTATAAACTGTGGTAACATGTAAGTATCTGTTTTTGTTAAAAGCTTTTAATTTTAATTTTAATTTTTTTACGTCTAAAAATGGTCATGCTAATGATTATTGATGAAATGTAGCTGCTGCTTCATAGCACCAACACAAAGTACCCACAATATATCTTACTGTATGTCACGCCTTGCCTTAGGAGCTTTTTCCTGTCATAATTTTGGTCCAGGTACTACTTGATTTTGACCTTGAACCTAGTGTGAGCATTTGAAGTTGCTTTACAATTACCTTTTGACTGCTGTCTTTCTTCTCTCTCAACTTAAACTAACATATATGTGTTTACTAGAACTCTTAGCTGTTCCTGGCACTTACATGCAACTAGTAATTCAAAACTTTCAAATAATATGCTTGTCTAATATTATTTATATCTAGAATGCTCAAGTGTGATCCGTCTTACTTGCTTTTGTCATGAGGAATCTCTCTCAACCGTGGCTCGGCATTCTTTCTTGTGTTATGAAGGATCTTACTATTTTCTTCATCTCATTTTTTTTTATTTATTGTCACTCATAAGTGTAATTTGTGTCTCCTTCTCCTGTAGGCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGA-ATTGGTTAACAAGCTCATCAAC-TTCCAGAACTCAGTT-CTTGGAAATACAGTAGTTAA</genome_strand>
        <mrna_strand>CTTACCGGTCTTTTTTAAGGTGCACACTTACCA...........................................................................TTTGCA-AGCGTTGATCTTGCTTGGAAATTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG.........................................................................................AGGTGTTTTTCTTCATGCGGTTTCAATTATAACTCGAGGACGCATATTGAAGGAGGTTTACGTGTTGACATGGACCGGAAAAAACAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCTGCTGAAG....................................................................................................................................................................................................................GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACCGTCTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGACCTAGAAGGACGAGCAACACCTTCTGCTGATGATGAATCGCTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGGCTTCCTTGATGCGTTTTGTCAGAGGGAAAGGGTATGACTTTCTGTGTGGATTCTTGTGTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCTTATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATAATTCCATTCTCGCGGAATGAGGATTGCCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGAAGGCAGTTCTGCTGAAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTAAAAGCCGAAATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAGGCTGGTCAACAAGCTCATCAACTTTCCAGAACTCAGTTCCTTGGAATTACAGTAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324102" ref_strand="+" ref_description="SGN-E324102 [cTOC-3-F17]">
      <seq>gcagtgcaggttagtgaaggcattgatctagaaggacgagcaacaccttcagctgatgatgaatcactttcagcagctcagaagcattcagttacagtcaaggcaggggcttccttgatgcgttttatcagagggaaaggaggtgcaacacagaggacaattgaggaggaaatgaaagtaaaaatcatacttccattctcgcggaatgaggattgcctcatcgtagaaggcaattctgctgaaagtgtggcaagagcatcagatagagtccaagctgtaattgatgaggtttgcaccaacattttttttttccgtgctagaagacaaataaggcataaaaggaatattacttttttatctgtcgaacttttagagcctataaactgtggtaacatgtaagtatctgtttttgttaaaagcttttaattttaattgtaatttttttacgtctaaaaatggtcatgctaatgattattgatgaaatgtagctgctgcttcatagcaccaacacaaagtacccacaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123214" stop="119308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122914" g_stop="122813" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121283" g_stop="121246" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="140" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76">
            <donor d_prob="0.362" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121169" g_stop="121090" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="220" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119915" g_stop="119608" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="528" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E324102" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122914" e_stop="122813"/>
          <exon e_start="121283" e_stop="121246"/>
          <exon e_start="121169" e_stop="121090"/>
          <exon e_start="119915" e_stop="119608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCAGTAGGTTGCTTCTTTATTTATGGGTGATTTTGATTGATTCAGCTTTTGTGCATTGATTAAGTTATTATTCAATCATAATGATATTTGTAGCCTGATTTTTGCTTTTGATAACGTACTGTATGATTTCTATGACCTACTTATGTTGTCCCTGGCCCTGCTATATTAAGTGATCAGTCAGTTGATCAATCGATGACTCGACAATCACAAATTAGTTGGATTTGGTGATGATTTATATATTCTGCTCCATTTGGGCAATTTCATTCTATTAGGATGTCTTTTAACACACCTTAAAGGTTCATTGTAACTGAAAACTCTCTAAATCTCGTGCTCATCCCTATGGATCTAATGTAGGTGTAGAAACATTGGTTAACCCTTAAATCACATAGTTGATTGTCTGGATAGATCCTTTGTTTTTTATTCTGCATTGATTTTAAGAGATCGTAGATCTTTTGAGATAATCTTCTTACGATTATATTTAGATCTATAAACACTTTCAATTGCCATAGCATTGCACCGACAAAGTAGTGCATTTGGATGTCTATACTGGATAGATCTTTTGTTTCATCCTACATTGATTTTTAGAGATCATAGATCTTTTTTTGTGATTACCTTCATGTGATTTTAGATCTATAAACACTTCCAATCGCCATAGTGTTGCACCTACAAAGTAGTACATTTGGATGTCTATGTAGGGGAGCAAAACCATCTTGGTTACCCTTCCTCATTTATTCTTCAGGTGTCCTACTTGTATCCTCGTCTGATGTAGTTATTTGTAATCTTATCAGTATTTAGTGATATTACGGTTTTTTATTTTCCGATTTCCAAGCTTAAGCTCCATTTAGGTCTCCTACCATTGTTTGTTGACCAAAATGTTGGAGGTATTCTTTGATAATGTGCTTTGATCTATTCTTGTCACTAGTTATGATATTTGGCTTTTGGTTTCTCCTATGTGATTTATTCTTTATATTAGTAGGTCTTTCGAATGGGGGATTAGCGTCCACTTCTCTTAATGTTGTTACTACTTGTGAAAGCCACTATTGCATGTTTCTTGCAGAGTGATTGGAGCTATATTCCTTTTGTATTGGTATATATTGAATATGGGTGAATACTAATTTGAAATCCAAAACAGCTATGTTCAACCTTTTTCGTTTTTAATATAGTGTCCATATTGCAGTCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAGGTTTGCACCAACATTTTTTTTTTCCGTGCTAGAAGACAAATAAGGCATAAAAGGAATATTACTTTTTTATCTGTCGAACTTTTAGAGCCTATAAACTGTGGTAACATGTAAGTATCTGTTTTTGTTAAAAGCTTTTAATTTTAATTTTAATTTTTTTACGTCTAAAAATGGTCATGCTAATGATTATTGATGAAATGTAGCTGCTGCTTCATAGCACCAACACAAAGTACCCACAATATA</genome_strand>
        <mrna_strand>GCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGG............................................................................AGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAGGTTTGCACCAACATTTTTTTTTTCCGTGCTAGAAGACAAATAAGGCATAAAAGGAATATTACTTTTTTATCTGTCGAACTTTTAGAGCCTATAAACTGTGGTAACATGTAAGTATCTGTTTTTGTTAAAAGCTTTTAATTTTAATTGTAATTTTTTTACGTCTAAAAATGGTCATGCTAATGATTATTGATGAAATGTAGCTGCTGCTTCATAGCACCAACACAAAGTACCCACAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450547" ref_strand="+" ref_description="SGN-E450547 [cSTS-9-N7]">
      <seq>tcaccaaaggttcactgtagtaccgaagcgcacaccaacacttccagaagtgtttttcttcatgcggtttcaattataactcgaggacgcatattgaaggaggtttacgtgttgacatggaccggaaaaaacagaaaatggttgctaaaacatggagacctgtttctactcaatcaaggtctgctgaaggtggtttaggtgatgagaagcatgattttggaggtcaagtgcaagaaattaaatgcaccgtctcttcgtatgagtcaacagttcagaaggcagtgcaggttagtgaaggcattgacctagaaggacgagcaacaccttctgctgatgatgaatcgctttcagcagctcagaagcattcagttacagtcaaggcaggggcttccttgatgcgttttgtcagagggaaaggaggtgcaacacagaggacaattgaggaggaaatgaaagtaaaaatcataattccattctcgcggaatgaggattgcctcatcatagaaggcagttctgctgaaagtgtggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123790" stop="119582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123490" g_stop="123447" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89">
            <donor d_prob="0.965" d_score="0.86"/>
            <acceptor a_prob="0.854" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123357" g_stop="123216" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="189" r_length="142" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123003" g_stop="122813" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="380" r_length="191" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121283" g_stop="121246" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="418" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76">
            <donor d_prob="0.362" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121169" g_stop="121090" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="498" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174">
            <donor d_prob="0.084" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119915" g_stop="119882" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="532" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E450547" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123490" e_stop="123447"/>
          <exon e_start="123357" e_stop="123216"/>
          <exon e_start="123003" e_stop="122813"/>
          <exon e_start="121283" e_stop="121246"/>
          <exon e_start="121169" e_stop="121090"/>
          <exon e_start="119915" e_stop="119882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CAAAGGTTCA-TGTAGTACCGAAGCGCACA-CAACACTTCCAGGTACACCAATCGCTATTTCTGTATAGAAATTAAATTTAACAAGGAAACGAAAAGGTAATGTTGTAATTGGGTAATTGTAGTTGTTGCAGAGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAGGTGAGTGTTCCTCACTTGTTAATATTAGATTGAGTTGTATTGGAAATTCTAGGTTGTTAAGCTTTCTGTACTTTTAGTTGATATTGGAAGTTATTAGGTATCCGAATAATTGAAAAATTTGTATATTGTTATGTCAGGAATATGATCTTATGTAGTATGTAGAATACACTGTTAAAGATGTGGAAGATTAATATTGGATTTTGGAAGTTCAGGTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCAGTAGGTTGCTTCTTTATTTATGGGTGATTTTGATTGATTCAGCTTTTGTGCATTGATTAAGTTATTATTCAATCATAATGATATTTGTAGCCTGATTTTTGCTTTTGATAACGTACTGTATGATTTCTATGACCTACTTATGTTGTCCCTGGCCCTGCTATATTAAGTGATCAGTCAGTTGATCAATCGATGACTCGACAATCACAAATTAGTTGGATTTGGTGATGATTTATATATTCTGCTCCATTTGGGCAATTTCATTCTATTAGGATGTCTTTTAACACACCTTAAAGGTTCATTGTAACTGAAAACTCTCTAAATCTCGTGCTCATCCCTATGGATCTAATGTAGGTGTAGAAACATTGGTTAACCCTTAAATCACATAGTTGATTGTCTGGATAGATCCTTTGTTTTTTATTCTGCATTGATTTTAAGAGATCGTAGATCTTTTGAGATAATCTTCTTACGATTATATTTAGATCTATAAACACTTTCAATTGCCATAGCATTGCACCGACAAAGTAGTGCATTTGGATGTCTATACTGGATAGATCTTTTGTTTCATCCTACATTGATTTTTAGAGATCATAGATCTTTTTTTGTGATTACCTTCATGTGATTTTAGATCTATAAACACTTCCAATCGCCATAGTGTTGCACCTACAAAGTAGTACATTTGGATGTCTATGTAGGGGAGCAAAACCATCTTGGTTACCCTTCCTCATTTATTCTTCAGGTGTCCTACTTGTATCCTCGTCTGATGTAGTTATTTGTAATCTTATCAGTATTTAGTGATATTACGGTTTTTTATTTTCCGATTTCCAAGCTTAAGCTCCATTTAGGTCTCCTACCATTGTTTGTTGACCAAAATGTTGGAGGTATTCTTTGATAATGTGCTTTGATCTATTCTTGTCACTAGTTATGATATTTGGCTTTTGGTTTCTCCTATGTGATTTATTCTTTATATTAGTAGGTCTTTCGAATGGGGGATTAGCGTCCACTTCTCTTAATGTTGTTACTACTTGTGAAAGCCACTATTGCATGTTTCTTGCAGAGTGATTGGAGCTATATTCCTTTTGTATTGGTATATATTGAATATGGGTGAATACTAATTTGAAATCCAAAACAGCTATGTTCAACCTTTTTCGTTTTTAATATAGTGTCCATATTGCAGTCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAG</genome_strand>
        <mrna_strand>TCACCAAAGGTTCACTGTAGTACCGAAGCGCACACCAACACTTCCAG.........................................................................................AAGTGTTTTTCTTCATGCGGTTTCAATTATAACTCGAGGACGCATATTGAAGGAGGTTTACGTGTTGACATGGACCGGAAAAAACAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCTGCTGAAG....................................................................................................................................................................................................................GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACCGTCTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGACCTAGAAGGACGAGCAACACCTTCTGCTGATGATGAATCGCTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGGCTTCCTTGATGCGTTTTGTCAGAGGGAAAGG............................................................................AGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATAATTCCATTCTCGCGGAATGAGGATTGCCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGAAGGCAGTTCTGCTGAAAGTGTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423484" ref_strand="+" ref_description="SGN-E423484 [STM-42-I5]">
      <seq>cgtcgatagagataaaacaaatgatagcttaccggtcttttttaagcgttgatcttgcttggaaattcacaaaggttcatgtagtaccgaagcgcacacaacacttccagaggtgtttttcttcatgcggtttcaattataactcgaggacgcatattgaaggaggtttacgtgttgacatggaccggaaaaaacagaaaatggttgctaaaacatggagacctgtttctactcaatcaaggtctgctgaaggtggtttaggtgatgagaagcatgattttggaggtcaagtgcaagaaattaaatgcaccgtctcttcgtatgagtcaacagttcagaaggcagtgcaggttagtgaaggcattgacctagaaggacgagcaacaccttctgctgatgatgaatcgctttcagcagctcagaagcattcagttacagtcaaggcaggggcttccttgatgcgttttgtcagagggaaaggaggtgcaacacagaagacaattgaggaggaaatgaaagtaaaatcataattccattctcgcggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123954" stop="120803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123654" g_stop="123609" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123608" i_stop="123511" i_length="98">
            <donor d_prob="0.873" d_score="0.93"/>
            <acceptor a_prob="0.699" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123510" g_stop="123447" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="110" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123357" g_stop="123216" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="252" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123003" g_stop="122813" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="443" r_length="191" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121283" g_stop="121246" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="481" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76">
            <donor d_prob="0.362" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121169" g_stop="121103" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="547" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E423484" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123654" e_stop="123609"/>
          <exon e_start="123510" e_stop="123447"/>
          <exon e_start="123357" e_stop="123216"/>
          <exon e_start="123003" e_stop="122813"/>
          <exon e_start="121283" e_stop="121246"/>
          <exon e_start="121169" e_stop="121103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGGAAGAGATAAAACGAATGATAGCTTACCGGTCTTTTTTAAGGTGCACACTTACCAGTACCATTTGCAAGTCTTTTCATTCTCTCAGTGAATTAGAGATTTATAACGTAGCTTTTTTCTCTTACCAATCGTCTTCCACAGCGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAGGTACACCAATCGCTATTTCTGTATAGAAATTAAATTTAACAAGGAAACGAAAAGGTAATGTTGTAATTGGGTAATTGTAGTTGTTGCAGAGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAGGTGAGTGTTCCTCACTTGTTAATATTAGATTGAGTTGTATTGGAAATTCTAGGTTGTTAAGCTTTCTGTACTTTTAGTTGATATTGGAAGTTATTAGGTATCCGAATAATTGAAAAATTTGTATATTGTTATGTCAGGAATATGATCTTATGTAGTATGTAGAATACACTGTTAAAGATGTGGAAGATTAATATTGGATTTTGGAAGTTCAGGTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAAT</genome_strand>
        <mrna_strand>CGTCGATAGAGATAAAACAAATGATAGCTTACCGGTCTTTTTTAAG..................................................................................................CGTTGATCTTGCTTGGAAATTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG.........................................................................................AGGTGTTTTTCTTCATGCGGTTTCAATTATAACTCGAGGACGCATATTGAAGGAGGTTTACGTGTTGACATGGACCGGAAAAAACAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCTGCTGAAG....................................................................................................................................................................................................................GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACCGTCTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGACCTAGAAGGACGAGCAACACCTTCTGCTGATGATGAATCGCTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGGCTTCCTTGATGCGTTTTGTCAGAGGGAAAGG............................................................................AGGTGCAACACAGAAGACAATTGAGGAGGAAATGAAAGT-AAAATCATAATTCCATTCTCGCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321173" ref_strand="+" ref_description="SGN-E321173 [cTOB-13-N15]">
      <seq>tcattcttccggcaggtgaatttattttcagcgccaccggccgtcggaagagataaaacgaatgatagcttaccggtcttttttaagcgttgatctcgctaggaagttcacaaaggttcatgtagtaccgaagcgcacacaacacttccagaggtgtttttcttcaagcggtttcagttatagctcgcggacgcatattgaaggaggtttacttgttgatatggaccggaaaaagcagaaaatggttgctaaaacatggagacctgtttctactcaatcaaggtcaactgaaggtggtttaggtgatgagaagcatgattttgtaggtcaagtgcaagaaattaaatgcactgtttcttcgtatgagtcaacagttcagaaggcagtgcaggttagtgaaggcattgatctagaaggacgagcaacaccttcagctgatgatgaatcactttcagcagctcagaagcattcagttacagtcaaagcatgggcttccttgatgcgttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="123995" stop="120957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123695" g_stop="123609" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123608" i_stop="123511" i_length="98">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123510" g_stop="123447" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123357" g_stop="123216" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="293" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123003" g_stop="122813" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="484" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121283" g_stop="121257" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="511" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E321173" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123695" e_stop="123609"/>
          <exon e_start="123510" e_stop="123447"/>
          <exon e_start="123357" e_stop="123216"/>
          <exon e_start="123003" e_stop="122813"/>
          <exon e_start="121283" e_stop="121257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTCCGGCAGGTGAATTTATTTTCAGCGCCACCGGCCGTCGGAAGAGATAAAACGAATGATAGCTTACCGGTCTTTTTTAAGGTGCACACTTACCAGTACCATTTGCAAGTCTTTTCATTCTCTCAGTGAATTAGAGATTTATAACGTAGCTTTTTTCTCTTACCAATCGTCTTCCACAGCGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAGGTACACCAATCGCTATTTCTGTATAGAAATTAAATTTAACAAGGAAACGAAAAGGTAATGTTGTAATTGGGTAATTGTAGTTGTTGCAGAGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAGGTGAGTGTTCCTCACTTGTTAATATTAGATTGAGTTGTATTGGAAATTCTAGGTTGTTAAGCTTTCTGTACTTTTAGTTGATATTGGAAGTTATTAGGTATCCGAATAATTGAAAAATTTGTATATTGTTATGTCAGGAATATGATCTTATGTAGTATGTAGAATACACTGTTAAAGATGTGGAAGATTAATATTGGATTTTGGAAGTTCAGGTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAGGTAATCTTGTTGGGTTTTACAACTTGACTAGCTTTTGATGTGTTTCTGTTTGTTTTTTTCTTTTGAATCTTCTTCATCCTGTCCAATTAGTCAATTCATTGTCTAGAACTTTAGGTGCAAGCATTATTTAAATGCAACATTAACATGCTATTTAAATATATTAAAGTTTTCCCAAAGTAAGTGGGAATATAGATTACTTAGAGCATTATGGTTACTTTTTTGAAAGCAATGTCTCTGAGCAGCTCTTGTCTGAGCATAGACATTGATGTGCTAGTCAAGAATAGGTTACGACATACCTCATGGGAAGATCAGTGAAGTGTATCTTTTCCTTTACTGTACGTATTAGAAAATATACTTGTAAAAAATTGAAGGAGAGCTGTAATCTGTATTCATTCCAAACACATAACAACCTGCTTGACAATCTGTCTTAAACTTCTTATGTACACATTGGCCCATAAAACAATACAAACACGCGATGAACCTTCTTTTTTGAAACTGTTAACAAGTATATATATATTAAAGTTGCACCATAACAATGCACATAGACATTACAAAAACCAACCTAGCTTGGGCTACTGCTTCTCAAGGATTCTATCAAATCAACTAGTGGTTCAGTCTCCTTGGCATAGCTTTCTGTACAGCAAAAATTAAACAAAAGAAGACAATTCATCTTCATTTTCTGCACAGAATTGTGTTTGTCTTCAAAACCTCTATAGGTCCTCTCCTCCAAATTGTCCACCATATACAAGCTGGACAACTTTCCATCAGTTCTTCTGACCAACTGCCCAACACGTGATGAATCTTCTAATACAACAAGTGACGAACCTAACTAAATGCGAACACGCTCTTATTATTGACTTTCAAGTTTCAACTTTATCTGGATCTTTGAAACTTCAGTGCATTCCTCAAAAGAGTTTCCAGTTTTTGCTTTCAAGTGATGGTAAGCATGCAAGTTCATGCGTTGCATCAGATGGAAATCCAGAAGAGGTCCATTATCCGTGAATGATATGGTACTGCCATATGCCTATTTTGCATGCCTTGGGAGGACATTGAAATCATAACAAAAGTTTTTAAACTACACTATCCTTGATTATAGAGATATCTTAGTTATTTTTTCTTGTATCACTAAATCTGTGTCTGAATGGAAGAATCACTTGTATCCACATGAATTTGCGACCCAATAAAACCTGTCACATGGCTAATTGGAAGATGAAGAGATGTTAGAGACCCATAAGAAGTGTTCAACTTTTCTGATGTATGTCTTTCGTTTTATCAGTTTTGTGTCATTATTGTGCTTCGGAGTTCTTAGCCATACTGCTCGCCCTTTTTAATGAGTAACATATTGAATAGGTCACATTTCCTGGCTGCATGTTCAGCGTATTATGTGGTTGTTGTTCTTTACACGATCTTCACTTTGCACTAATGACACTTGCTATGGATGCTTTTTATCATAAACTCAGAGTTTTCCCACTAAATTGGCTTTCAATTTTCTGCTACCGTTATCATCTCATTTCCAAACATACCTGCAGGCAGGGGCTTCCTTGATGCGTTTTATC</genome_strand>
        <mrna_strand>TCATTCTTCCGGCAGGTGAATTTATTTTCAGCGCCACCGGCCGTCGGAAGAGATAAAACGAATGATAGCTTACCGGTCTTTTTTAAG..................................................................................................CGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG.........................................................................................AGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAG....................................................................................................................................................................................................................GTGGTTTAGGTGATGAGAAGCATGATTTTGTAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGGCTTCCTTGATGCGTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728932" ref_strand="+" ref_description="SGN-E728932 [LA19BG02]">
      <seq>cacagagcagggaagtgagagtgcgtagagcacaacgaggacgatgctggaaagagtgctctcttctcgcagggcgacgccggtcagtgacgacggcgatgagactggcgacgaatccaaaactcggaagcacatatctgtggcgacgagggttacaaattacgtgattcgaactggtcatctctggccatgccttctcatagggcttgtgattgtgttggtaacttctttcgtttatcacactcgcgacttagtatgtatctccgcttcctcttccgatcacctttctcgtttgcgattctttggcttcgaaggcctggaaacggacttcggatctctcggtgttccttggtgcccaacgaaacatgacataactgttgaatggaccacaaaggacctcatcggaggtctggaggagtttgtgcccatatatgagacacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124766" stop="126813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125066" g_stop="125418" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125419" i_stop="126423" i_length="1005">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126424" g_stop="126513" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="443" r_length="90" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E728932" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125066" e_stop="125418"/>
          <exon e_start="126424" e_stop="126513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGCAGGGAAGTGAGAGTGCGTAGAGCACAACGAGGACGATGCTGGAAAGAGTGCTCTCTTCTCGCAGGGCGACGCCGGTCAGTGACGACGGCGATGAGACTGGCGACGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATATAGTTAATGGAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCTAAGTTCATTGTTATAATGGGAAATCACACATACATTTCCAGAATCTGCACATTTAGTTTCAAGACATTACTATAGTGGAAAATCCTATTCCGATGTCCAGAAATTACATATAGTCTCAAGACCAAGACCAAGATTGTTTTCCTTCTATCATTTGTAGATGATGAGTGTCGCATAATCAGGATCAATTATAGCCAGCTCCACTTCATAGTTTTTTAAATTTTCTTTCATAATATGATGATTATAATCTCCAGAGTGTGGCATAAACCGGAATAATTGGCTTTCTAGTGGCTTCATTCTGTTATATAGTGATATCAGAAGTAAAATGGTTTATCATCTTTACAGTCTTAAGCGGCACTTTTGATCTATGGTCAACAAATGAAGCAACTTTTTAGACATGTGTGTATGCATGTCATTCACCTTTTCTAAAATGTCAGATTCTTCCTGTTATTTATCTGTGAAACTCAACTGTTGAGCAGTGAAATTCACATGGTCCAATGCACCTTTAATTAATTTTTACTCTTGTCAAAAGGCAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGC</genome_strand>
        <mrna_strand>CACAGAGCAGGGAAGTGAGAGTGCGTAGAGCACAACGAGGACGATGCTGGAAAGAGTGCTCTCTTCTCGCAGGGCGACGCCGGTCAGTGACGACGGCGATGAGACTGGCGACGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAACGAAACATGACATAACTGTTGAATGGACCACAAAGGACCTCATCGGAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339580" ref_strand="+" ref_description="SGN-E339580 [cTOE-16-B23]">
      <seq>caccaacgaggacgatgctggaaagagtgctctcttctcgcagggcgacgccggtcagtgacgacggcgatgagactggcgacgaatccaaaactcggaagcacatatctgtggcgacgagggttacaaattacgtgattcgaactggtcatctctggccatgccttctcatagggcttgtgattgtgttggtaacttctttcgtttatcacactcgcgacttagtatgtatctccgcttcctcttccgatcacctttctcgtttgcgattctttggcttcgaaggcctggaaacggacttcggatctctcggtgttccttggtgcagaacgaaacatgacagaactgttgaatggaccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctggtttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124796" stop="126875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125096" g_stop="125418" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125419" i_stop="126423" i_length="1005">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126424" g_stop="126575" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="476" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E339580" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125096" e_stop="125418"/>
          <exon e_start="126424" e_stop="126575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-CAACGAGGACGATGCTGGAAAGAGTGCTCTCTTCTCGCAGGGCGACGCCGGTCAGTGACGACGGCGATGAGACTGGCGACGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATATAGTTAATGGAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCTAAGTTCATTGTTATAATGGGAAATCACACATACATTTCCAGAATCTGCACATTTAGTTTCAAGACATTACTATAGTGGAAAATCCTATTCCGATGTCCAGAAATTACATATAGTCTCAAGACCAAGACCAAGATTGTTTTCCTTCTATCATTTGTAGATGATGAGTGTCGCATAATCAGGATCAATTATAGCCAGCTCCACTTCATAGTTTTTTAAATTTTCTTTCATAATATGATGATTATAATCTCCAGAGTGTGGCATAAACCGGAATAATTGGCTTTCTAGTGGCTTCATTCTGTTATATAGTGATATCAGAAGTAAAATGGTTTATCATCTTTACAGTCTTAAGCGGCACTTTTGATCTATGGTCAACAAATGAAGCAACTTTTTAGACATGTGTGTATGCATGTCATTCACCTTTTCTAAAATGTCAGATTCTTCCTGTTATTTATCTGTGAAACTCAACTGTTGAGCAGTGAAATTCACATGGTCCAATGCACCTTTAATTAATTTTTACTCTTGTCAAAAGGCAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACT</genome_strand>
        <mrna_strand>CACCAACGAGGACGATGCTGGAAAGAGTGCTCTCTTCTCGCAGGGCGACGCCGGTCAGTGACGACGGCGATGAGACTGGCGACGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379610" ref_strand="+" ref_description="SGN-E379610 [TUS-1-B18]">
      <seq>cgaatccaaaactcggaagcacatatctgtggcgacgagggttacaaattacgtgattcgaactggtcatctctggccatgccttctcatagggcttgtgattgtgttggtaacttctttcgtttatcacactcgcgacttagtatgtatctccgcttcctcttccgatcacctttctcgtttgcgattctttggcttcgaaggcctggaaacggacttcggatctctcggtgttccttggtgtaagttcattgcgtttcagttttagtgtatattcagatctggttttatttttccttgttgagcattgcgtgctagtgtattttctctaaatggattcaattgaacacatctcgatttccttcggaggaactgtggtacatttattttctattagattttattgatttgtgaaatctaaacctacggttttccagctgtacatgaatcatctgtaggatgtgtcatggtgcaattaactggattaatgttttgtattattttggcgtcactttcgttgtaggatccaatggcttgattcaaacagaacaagattgatattacatgtgatgttaaagaaggaatttggtgtgttagaaatttacaagtggcatagattgttgcttcatataanttaatgcaggaactaggtgtgtataataattctagtggtacagattatcgtttttatctaactgatagtttcctatttgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124877" stop="126194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125177" g_stop="125894" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E379610" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125177" e_stop="125894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATAT-AGTTAATGGAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCT</genome_strand>
        <mrna_strand>CGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGCGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATATAANTTAATGCAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200232" ref_strand="+" ref_description="SGN-E200232 [cLEC-12-F16]">
      <seq>cgaatccaaaactcggaagcacatatctgtggcgacgagggttacaaattacgtgattcgaactggtcatctctggccatgccttctcatagggcttgtgattgtgttggtaacttctttcgtttatcacactcgcgacttagtatgtatctccgcttcctcttccgatcacctttctcgtttgcgattctttggcttcgaaggcctggaaacggacttcggatctctcggtgttccttggtgtaagttcattgcgtttcagttttagtgtatattcagatctggttttatttttccttgttgagcattgcgtgctagtgtattttctctaaatggattcaattgaacacatctcgatttccttcggaggaactgtggtacatttattttctattagattttattgatttgtgaaatctaaacctacggttttccagctgtacatgaatcatctgtaggatgtgtcatggtgcaattaactggattaatgttttgtattattttggtgtcactttcgttgtaggatccaatggcttgattcaaacagaacaagattgatattacatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124877" stop="126047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125177" g_stop="125747" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E200232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125177" e_stop="125747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGAT</genome_strand>
        <mrna_strand>CGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287962" ref_strand="+" ref_description="SGN-E287962 [cLES-7-A20]">
      <seq>gcgacgagggttacaaattacgtgattcgaactggtcatctctggccatgccttctcatagggcttgtgattgggttggtaacttctttcgtttatcacactcgcgacttagtatgtatctccgcttcctcttccgatcacctttctcgtttgcgattctttggcttcgaaggcctggaaacggacttcggatctctcggtgttccttggtgcagaacgaaacatgacagaactgttggatgggccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctgggttatcactctgcggttaaaacccgagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="124908" stop="126948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125208" g_stop="125418" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125419" i_stop="126423" i_length="1005">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126424" g_stop="126648" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="436" r_length="225" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E287962" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125208" e_stop="125418"/>
          <exon e_start="126424" e_stop="126648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATATAGTTAATGGAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCTAAGTTCATTGTTATAATGGGAAATCACACATACATTTCCAGAATCTGCACATTTAGTTTCAAGACATTACTATAGTGGAAAATCCTATTCCGATGTCCAGAAATTACATATAGTCTCAAGACCAAGACCAAGATTGTTTTCCTTCTATCATTTGTAGATGATGAGTGTCGCATAATCAGGATCAATTATAGCCAGCTCCACTTCATAGTTTTTTAAATTTTCTTTCATAATATGATGATTATAATCTCCAGAGTGTGGCATAAACCGGAATAATTGGCTTTCTAGTGGCTTCATTCTGTTATATAGTGATATCAGAAGTAAAATGGTTTATCATCTTTACAGTCTTAAGCGGCACTTTTGATCTATGGTCAACAAATGAAGCAACTTTTTAGACATGTGTGTATGCATGTCATTCACCTTTTCTAAAATGTCAGATTCTTCCTGTTATTTATCTGTGAAACTCAACTGTTGAGCAGTGAAATTCACATGGTCCAATGCACCTTTAATTAATTTTTACTCTTGTCAAAAGGCAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAG</genome_strand>
        <mrna_strand>GCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGGGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACGAAACATGACAGAACTGTTGGATGGGCCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGGTTATCACTCTGCGGTTAAAACCCGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398230" ref_strand="+" ref_description="SGN-E398230 [TUS-14-M12]">
      <seq>cagaacgaaacatgacagaactgttgaatggaccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctggtttatcactcggtggttaaaaccagagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaagcaatgccagatacacgaatcatctcacttacaccccgtcatcctgagaagtatctaaagaaagggcctgcctacgttgatgagaattgcacgtacttcgctggaaaagactttgttgattttggaaatgttgattgggggaaagttatgaagaagcatggaatcaaggatcgtagccaggttcttgtcgtttttgatgatcatcaaaatgaattgaaaagactgaagcaagcactaaaagctgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126125" stop="127371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126425" g_stop="126868" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127044" g_stop="127071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="472" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E398230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126425" e_stop="126868"/>
          <exon e_start="127044" e_stop="127071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAGGTATAACTTCTATAGCTTTATTTTGAGTTTTGTTAAAGAAGTGATTCCGCCAGTCACTTGTTCTGTCTAATGTCATCATATCCATAGCAGTACTCAATGATGCTATGGCTTTGCTGGTTCCCACTTGTTTTGCAAATATGTCTCATTGTTCTCTGTTTTGAACTTTGATTGACAGACTGAAGCAAGCACTAAAAGCTGGGTTT</genome_strand>
        <mrna_strand>CAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCGTTTTTGATGATCATCAAAATGAATTGAAAAG...............................................................................................................................................................................ACTGAAGCAAGCACTAAAAGCTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202098" ref_strand="+" ref_description="SGN-E202098 [cLEC-7-G5]">
      <seq>agaacgaaacatgacagaactgttgaatggaccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctggtttatcactcggtggttaaaaccagagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaagcaatgccagatacacgaatcatctcacttacaccccgtcatcctgagaagtatctaaagaaagggcctgcctacgttgatgagaattgcacgtacttcgctggaaaagactttgttgattttggaaatgttgattgggggaaagttatgaagaagcatggaatcaaggatcgtagccaggttcttgtcttttttgatgatcatcaaaatgaattgaaaagactgaagcaagcactaaaagctgggtttaggcatcttgtgtttgaggacaattatgatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126126" stop="127406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126426" g_stop="126868" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127044" g_stop="127106" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="506" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E202098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126426" e_stop="126868"/>
          <exon e_start="127044" e_stop="127106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAGGTATAACTTCTATAGCTTTATTTTGAGTTTTGTTAAAGAAGTGATTCCGCCAGTCACTTGTTCTGTCTAATGTCATCATATCCATAGCAGTACTCAATGATGCTATGGCTTTGCTGGTTCCCACTTGTTTTGCAAATATGTCTCATTGTTCTCTGTTTTGAACTTTGATTGACAGACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGG</genome_strand>
        <mrna_strand>AGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAG...............................................................................................................................................................................ACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207965" ref_strand="+" ref_description="SGN-E207965 [cLEC-34-P3]">
      <seq>agaacgaaacatgacagaactgttgaatggaccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctggtttatcactcggtggttaaaaccagagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaagcaatgccagatacacgaatcatctcacttacaccccgtcatcctgagaagtatctaaagaaagggcctgcctacgttgatgagaattgcacgtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126126" stop="127046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126426" g_stop="126746" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E207965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126426" e_stop="126746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTC</genome_strand>
        <mrna_strand>AGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710686" ref_strand="+" ref_description="SGN-E710686 [FA56AH12]">
      <seq>ccgattggaccacaaaggatttaatcaaaggtctggaggagtttgtgcccatatatgagacacggcctatcaagaataacatgtatggtatgggttttgatcacagctttgggctctggtttatcactcggtggttaaaaccagagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaagcaatgccagatacacgaatcatctcacttacaccccgtcatcctgagaagtatctaaagaaagggcctgcctacgttgatgagaattgcacgtacttcgctggaaaagactttgttgattttggaaatgttgattgggggaaagttatgaagaagcatggaatcaaggatcgtagccaggttcttgtcttttttgatgatcatcaaaatgaattgaaaagactgaagcaagcactaaaagctgggtttaggcatcttgtgtttgaggacaattatgatactggtacaggagaccactactctttcaggcaaatgtgcgatcaattttatattagaggtggaggccatagctgctttaaggacagtgatgaaggaaggatcagagcaagaaggaagaaattctgggagaaggctgttgacattgatgaactttgcggtcctggtgaagcttggtggggtgtgagagggcagatgcgggatgattttaaccacagtaataaggccatttcttatgcagaacattttaaaaatagcaggtttgtagagtcagtgttagatgtttactgggagcttccacccgtggctggtccttcattaactcatcagacaagatacgatccggctcgggcatcaagtcctattgttgaaaatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126150" stop="129075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126448" g_stop="126868" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127044" g_stop="127159" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="537" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127160" i_stop="128456" i_length="1297">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128457" g_stop="128775" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="856" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E710686" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126448" e_stop="126868"/>
          <exon e_start="127044" e_stop="127159"/>
          <exon e_start="128457" e_stop="128775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAGGTATAACTTCTATAGCTTTATTTTGAGTTTTGTTAAAGAAGTGATTCCGCCAGTCACTTGTTCTGTCTAATGTCATCATATCCATAGCAGTACTCAATGATGCTATGGCTTTGCTGGTTCCCACTTGTTTTGCAAATATGTCTCATTGTTCTCTGTTTTGAACTTTGATTGACAGACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAGGTATATTTTCACCTCGACTTTAAACAATTATTTTTCCTCTGTCAAGCCAAAGAAAGCATTATCCAGTCATTATCGTATCTATCTGGATTTTCCCTTTTCTAAGTTGATTCAGTTTTTATTTGGAAAATCGTGGTGAGATTTTTTTGACTCTGTATGTGGAATAACAAATAAATAGAGATCATGTGCTATTGTAATAGCCTTATTCATATAGTTTCTTGCTTTTGTTATATCTTACCATCTGTTGTTTATGTTAGATTGCACTATTTTGTTGATGTTGTTGTTCCTTGCATGCATGCTCTACAATGCTTTTTTGTTAATTTCCATGTTATTTCCGCTGCCGTTTTTCTTTTTCATTACTCATTTGTTTTGCTTCACTTGAGCCAAGGGTCTTTAGGAAAAAGCATCTCTACCTCCATGTGGTATGTGGTAGGGGTAAGGTTTGCGTATACTCTATCCTCCCAAGACCCCTCTTTGTGGAATTTCATTGTGTATGTTGTTGTTGTGCTGAAGTATTTTTCTCCCATGAAACTCCTAATGGAGCAGTAAAACTGTTTATTCTCTCATGAGAAATTTGTTTGCAATGCAAAGCTTAAGGATGTTGATATTTTTAAAGGACAAGAAGTCAGTGGCATGATGTTTGATTAGAATATACAGTTGTGTTTTTTTAAACATACAGTGCTGGAAGAACAATACACTGCAGAATATGTTGCTAACGGCTATCTAACCAAATCTAAACCCTGCAAGTTGGGAGTTTTTTGGGCAAGTTCCATCTGATATTTGACATTAATCTGTCAATTAACTCAGTGATCTCAACCCAAAATCCTAATTTTAGGAGATCAATTGTCCTAGTGGTACCAAGTAGAGAATTCAAAATTTAGATCAAAATCATGATCTTATAGAATATAGAGATCACTTCCAAATGTGTATTACTCCATACATTATCGTGGAATCTTTTGTTGGTTTTGCTTGTCTAACCAAGTAAACACATTGTTCTTTGTTTAGGCCACCTTTATCTAGTGCATTTGTAAAGAATCAGTTAATTCATTATGAGATTGGAAAACCAAGGTAAACAGATGAGAAATATGTAGAGAATAATAGGGAGAGATCTTGATATGAAGAAACCGAATACAAATACACTCTAGTATAGAGTGTTGATAGATCAAATAGCAGTTATGCTATGCTTAGACCATGCCAGTTCACTATATGAATGTCTTTTTTGTGAAATTATTTGTCTGGCTTTTATGGTCAGTGCATACTTAATTCTTACTACATGACATGTTTTCAAATTTCATTCCAGGTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAG</genome_strand>
        <mrna_strand>CCGATTGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAG...............................................................................................................................................................................ACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAAATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367535" ref_strand="+" ref_description="SGN-E367535 [cLPT-7-D13]">
      <seq>aaaaccagagttgatgattgagagtggtgcattcaagggacactcaacttgggtcttgagacaagcaatgccagatacacgaatcatctcacttacaccccgtcatcctgagaagtatctaaagaaagggcctgcctacgttgatgagaattgcacatactttgctggtaaagactttgttgattttggaaatgttgattgggggaaagttatgaagaagcatgggatcaaggatcgtagccagggtcttgtcttttttgatgatcatcaaaatgaattgaaaagactgaagcaagcactaaaagctgggtttaggcatcttgtgtttgaggacaattatgatactggtacaggagaccactactctttcaagcaaatgtgcgatcaattttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126284" stop="127453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126584" g_stop="126868" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127044" g_stop="127153" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="395" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E367535" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126584" e_stop="126868"/>
          <exon e_start="127044" e_stop="127153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAGGTATAACTTCTATAGCTTTATTTTGAGTTTTGTTAAAGAAGTGATTCCGCCAGTCACTTGTTCTGTCTAATGTCATCATATCCATAGCAGTACTCAATGATGCTATGGCTTTGCTGGTTCCCACTTGTTTTGCAAATATGTCTCATTGTTCTCTGTTTTGAACTTTGATTGACAGACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATA</genome_strand>
        <mrna_strand>AAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACATACTTTGCTGGTAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGGATCAAGGATCGTAGCCAGGGTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAG...............................................................................................................................................................................ACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAAGCAAATGTGCGATCAATTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286534" ref_strand="+" ref_description="SGN-E286534 [cLES-12-L3]">
      <seq>agttatgaagaagcatggaatcaaggatcgtagccaggttcttgtcttttttgatgatcatcaaaatgaattgaaaagactgaagcaagcactaaaagctgggtttaggcatcttgtgtttgaggacaattatgatactggtacaggagaccactactctttcaggcaaatgtgcgatcaattttatattagaggtggaggccatagctgctttaaggacagtgatgaaggaaggatcagagcaagaaggaagaaattctgggagaaggctgttgacattgatgaactttgcggtcctggtgaagcttggtggggtgtgagagggcagatgcgggatgattttaaccacagtaataaggccatttcttatgcagaacattttaaaaatagcaggtttgtagagtcagtgttagatgtttactgggagcttccacccgtggctggtccttcattaactcatcagacaagatacgatcccgctcgggcatcaagtcctattgttgaagatggcaggtatggcttgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126491" stop="129089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126791" g_stop="126868" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127044" g_stop="127159" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="194" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127160" i_stop="128456" i_length="1297">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128457" g_stop="128789" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="527" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E286534" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126791" e_stop="126868"/>
          <exon e_start="127044" e_stop="127159"/>
          <exon e_start="128457" e_stop="128789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAGGTATAACTTCTATAGCTTTATTTTGAGTTTTGTTAAAGAAGTGATTCCGCCAGTCACTTGTTCTGTCTAATGTCATCATATCCATAGCAGTACTCAATGATGCTATGGCTTTGCTGGTTCCCACTTGTTTTGCAAATATGTCTCATTGTTCTCTGTTTTGAACTTTGATTGACAGACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAGGTATATTTTCACCTCGACTTTAAACAATTATTTTTCCTCTGTCAAGCCAAAGAAAGCATTATCCAGTCATTATCGTATCTATCTGGATTTTCCCTTTTCTAAGTTGATTCAGTTTTTATTTGGAAAATCGTGGTGAGATTTTTTTGACTCTGTATGTGGAATAACAAATAAATAGAGATCATGTGCTATTGTAATAGCCTTATTCATATAGTTTCTTGCTTTTGTTATATCTTACCATCTGTTGTTTATGTTAGATTGCACTATTTTGTTGATGTTGTTGTTCCTTGCATGCATGCTCTACAATGCTTTTTTGTTAATTTCCATGTTATTTCCGCTGCCGTTTTTCTTTTTCATTACTCATTTGTTTTGCTTCACTTGAGCCAAGGGTCTTTAGGAAAAAGCATCTCTACCTCCATGTGGTATGTGGTAGGGGTAAGGTTTGCGTATACTCTATCCTCCCAAGACCCCTCTTTGTGGAATTTCATTGTGTATGTTGTTGTTGTGCTGAAGTATTTTTCTCCCATGAAACTCCTAATGGAGCAGTAAAACTGTTTATTCTCTCATGAGAAATTTGTTTGCAATGCAAAGCTTAAGGATGTTGATATTTTTAAAGGACAAGAAGTCAGTGGCATGATGTTTGATTAGAATATACAGTTGTGTTTTTTTAAACATACAGTGCTGGAAGAACAATACACTGCAGAATATGTTGCTAACGGCTATCTAACCAAATCTAAACCCTGCAAGTTGGGAGTTTTTTGGGCAAGTTCCATCTGATATTTGACATTAATCTGTCAATTAACTCAGTGATCTCAACCCAAAATCCTAATTTTAGGAGATCAATTGTCCTAGTGGTACCAAGTAGAGAATTCAAAATTTAGATCAAAATCATGATCTTATAGAATATAGAGATCACTTCCAAATGTGTATTACTCCATACATTATCGTGGAATCTTTTGTTGGTTTTGCTTGTCTAACCAAGTAAACACATTGTTCTTTGTTTAGGCCACCTTTATCTAGTGCATTTGTAAAGAATCAGTTAATTCATTATGAGATTGGAAAACCAAGGTAAACAGATGAGAAATATGTAGAGAATAATAGGGAGAGATCTTGATATGAAGAAACCGAATACAAATACACTCTAGTATAGAGTGTTGATAGATCAAATAGCAGTTATGCTATGCTTAGACCATGCCAGTTCACTATATGAATGTCTTTTTTGTGAAATTATTTGTCTGGCTTTTATGGTCAGTGCATACTTAATTCTTACTACATGACATGTTTTCAAATTTCATTCCAGGTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTC</genome_strand>
        <mrna_strand>AGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAG...............................................................................................................................................................................ACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCCGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379862" ref_strand="+" ref_description="SGN-E379862 [TUS-1-B18](-)">
      <seq>tgaggacaattatgatactggtacaggagaccactactctttcaggcaaatgtgcgatcaattttatattagaggtggaggccatagctgctttaaggacagtgatgaaggaaggatcagagcaagaaggaagaaattctgggagaaggctgttgacattgatgaactttgcggtcctggtgaagcttggtggggtgtgagagggcagatgcgggatgattttaaccacagtaataaggccatttcttatgcagaacattttaaaaatagcaggtttgtagagtcagtgttagatgtttactgggagcttccacccgtggctggtccttcattaactcatcagacaagatacgatccggctcgggcatcaagtcctattgttgaagatggcaggtatggcttgtttcggaggcttgggttatctggactggaggcatctgtattcaatggttacactcaaatggtctatcttcaggtgtctcaagaatgagattttggttgccactgcatataagttgtagttttgtattagcgatctctgtgtcaactgttcttttagttgtttctggtgcaactcttgagaggctgtctctgtgctgccaatagattttactccgacaatctttcagatgtccatttatccactggtcactctgatgtttgtgcagagtaacggatgtgagatgagttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="126786" stop="129378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127086" g_stop="127159" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127160" i_stop="128456" i_length="1297">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128457" g_stop="129078" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="696" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E379862" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127086" e_stop="127159"/>
          <exon e_start="128457" e_stop="129078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAGGTATATTTTCACCTCGACTTTAAACAATTATTTTTCCTCTGTCAAGCCAAAGAAAGCATTATCCAGTCATTATCGTATCTATCTGGATTTTCCCTTTTCTAAGTTGATTCAGTTTTTATTTGGAAAATCGTGGTGAGATTTTTTTGACTCTGTATGTGGAATAACAAATAAATAGAGATCATGTGCTATTGTAATAGCCTTATTCATATAGTTTCTTGCTTTTGTTATATCTTACCATCTGTTGTTTATGTTAGATTGCACTATTTTGTTGATGTTGTTGTTCCTTGCATGCATGCTCTACAATGCTTTTTTGTTAATTTCCATGTTATTTCCGCTGCCGTTTTTCTTTTTCATTACTCATTTGTTTTGCTTCACTTGAGCCAAGGGTCTTTAGGAAAAAGCATCTCTACCTCCATGTGGTATGTGGTAGGGGTAAGGTTTGCGTATACTCTATCCTCCCAAGACCCCTCTTTGTGGAATTTCATTGTGTATGTTGTTGTTGTGCTGAAGTATTTTTCTCCCATGAAACTCCTAATGGAGCAGTAAAACTGTTTATTCTCTCATGAGAAATTTGTTTGCAATGCAAAGCTTAAGGATGTTGATATTTTTAAAGGACAAGAAGTCAGTGGCATGATGTTTGATTAGAATATACAGTTGTGTTTTTTTAAACATACAGTGCTGGAAGAACAATACACTGCAGAATATGTTGCTAACGGCTATCTAACCAAATCTAAACCCTGCAAGTTGGGAGTTTTTTGGGCAAGTTCCATCTGATATTTGACATTAATCTGTCAATTAACTCAGTGATCTCAACCCAAAATCCTAATTTTAGGAGATCAATTGTCCTAGTGGTACCAAGTAGAGAATTCAAAATTTAGATCAAAATCATGATCTTATAGAATATAGAGATCACTTCCAAATGTGTATTACTCCATACATTATCGTGGAATCTTTTGTTGGTTTTGCTTGTCTAACCAAGTAAACACATTGTTCTTTGTTTAGGCCACCTTTATCTAGTGCATTTGTAAAGAATCAGTTAATTCATTATGAGATTGGAAAACCAAGGTAAACAGATGAGAAATATGTAGAGAATAATAGGGAGAGATCTTGATATGAAGAAACCGAATACAAATACACTCTAGTATAGAGTGTTGATAGATCAAATAGCAGTTATGCTATGCTTAGACCATGCCAGTTCACTATATGAATGTCTTTTTTGTGAAATTATTTGTCTGGCTTTTATGGTCAGTGCATACTTAATTCTTACTACATGACATGTTTTCAAATTTCATTCCAGGTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTCGGAGGCTTGGGTTATCTGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTT</genome_strand>
        <mrna_strand>TGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTCGGAGGCTTGGGTTATCTGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTGAGATGAGTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393929" ref_strand="+" ref_description="SGN-E393929 [TUS-14-M12](-)">
      <seq>ggccatagctgctttaaggacagtgatgaaggaaggatcagagcaagaaggaagaaattctgggagaaggctgttgacattgatgaactttgcggtcctggtgaagcttggtggggtgtgagagggcagatgcgggatgattttaaccacagtaataaggccatttcttatgcagaacattttaaaaatagcaggtttgtagagtcagtgttagatgtttactgggagcttccacccgtggctggtccttcattaactcatcagacaagatacgatccggctcgggcatcaagtcctattgttgaagatggcaggtatggcttgtttcggaggcttgggttatctggactggaggcatctgtattcaatggttacactcaaatggtctatcttcaggtgtctcaagaatgagattttggttgccactgcatataagttgtagttttgtattagcgatctctgtgtcaactgttcttttagttgtttttggtgcaactcttgagaggctgtctctgtgctgccaatagattttactccgacaatctttcagatgtccatttatccactggtcactttgatgtttgtgcagagtaacggatgtctgatgagttaaatttatcccatctgtataatgtgctcgtaaattatattctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="128162" stop="129422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128462" g_stop="129127" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E393929" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128462" e_stop="129127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTCGGAGGCTTGGGTTATCTGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTTATCCCATCTGTATAATGTGCTCGTAAATTATATTCTAGAAAATAGCCTA</genome_strand>
        <mrna_strand>GGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTCGGAGGCTTGGGTTATCTGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTTTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTTTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTTATCCCATCTGTATAATGTGCTCGTAAATTATATTCTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293043" ref_strand="+" ref_description="SGN-E293043 [cLET-12-K13]">
      <seq>tggactggaggcatctgtattcaatggttacactcaaatggtctatcttcaggtgtctcaagaatgagattttggttgccactgcatataagttgtagttttgtattagcgatctctgtgtcaactgttcttttagttgtttctggtgcaactcttgagaggctgtctctgtgctgccaatagattttactccgacaatctttcagatgtccatttatccactggtcactctgatgtttgtgcagagtaacggatgtctgatgagttaaatttatcccatctgtataatgtgctcgtaaattatattctagaaaatagcctatgttgaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="128506" stop="129438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128806" g_stop="129146" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E293043" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128806" e_stop="129146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTTATCCCATCTGTATAATGTGCTCGTAAATTATATTCTAGAAAATAGCCTATGTTGAAACAACCCTCCTT</genome_strand>
        <mrna_strand>TGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTTATCCCATCTGTATAATGTGCTCGTAAATTATATTCTAGAAAATAGCCTATGTTGAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473869" ref_strand="-" ref_description="SGN-E473869 [cSTB-34-C13]">
      <seq>tatcaaaacttatagtaactatgcagagctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgcgccagtgatagacttccagggcaagagaaactcagtgaaagtcacttgatggatcttctcaatggttctgaatatgtgctgacttatgaagacaaggatggtgactggatgctagtcggcgacgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaaaagctcagaggcaattgggctagctccaagggccataaacaagtgcaagaaccaaaattagcgactgaaagactaaccgtccaagggtttctacaacgtcaaccatcctttttttgccctgtttgtatctggaattagactagatgtgtagcatcccttgaaagggagagagctggtttaagaaaatataaccggtgataaattgtaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131246" stop="110388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130946" g_stop="130876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="213" r_length="142" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="275" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129923" g_stop="129738" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="460" r_length="185" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129737" i_stop="128948" i_length="790">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128947" g_stop="128914" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="493" r_length="33" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E473869" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130946" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129738"/>
          <exon e_start="128947" e_stop="128914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACATAATAACTTCCAAGTTCTAACCTACTAATTACTAGTAATTGATCAAAGTAATATTCTAGAATTCAAAACAAGCAGGATGTAATGGAATGTTACTCCAAACTCCAATTTTTCCATGCTCGTGTAACGGGGTTTAGGATTGAAATAAATTGCATATAGCTTGAACCTTGGATTAGTTCGTTCAAGGGCTGTCAACGTTACAACTCTGGATCTGCCATTGCCAGTTCAATCCCCAAGAGAAGATCATTACTGCGTGCTCAGTTAGTTGACCTACAGTAGCAAGAAGGTTATCGTGGCAGGAGTTCCCTTTTTGTGGACTCGAGCAGAAAAGCTCAATCTGCACTCATTGCTCATTTATCGATGAATACTGAACAATCAAATGGAACCATTTGTTTCAACATAGGCTAGTAAAACATCAGAAGTGGGTCTCAATCATTCTAACATACCAGTGATATAGACTAAGATATTAGCAAGCACAAGGAGGGTTGTTTCAACATAGGCTATTTTCTAGAATATAATTTACGAGCACATTATACAGATGGGATAAATTTAACTCATCAGACATCCGTTACTCTGCACAAACATCAGAGTGACCAGTGGATAAATGGACATCTGAAAGATTGTCGGAGTAAAATCTATTGGCAGCACAGAGACAGCCTCTCAAGAGTTGCACCAGAAACAACTAAAAGAACAGTTGACACAGAGATCGC</genome_strand>
        <mrna_strand>TATCAAAACTTATAGTAACTATGCAGAGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGCGCCAGTGATAGACTTCCAGGGCAAGAGAAACTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAATATGTGCTGACTTATGAAGACAAGGATGGTGACTGGATGCTAGTCGGCGACGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAACAAGTGCAAGAACCAAAATTAGCGACTGAAAGACTAACCGTCC-AAGGGTTTCTACAACGTCAACCATCCTTTTTTTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCTTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTGATAAATTGTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGAGAC-TAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474025" ref_strand="-" ref_description="SGN-E474025 [cSTB-34-B13]">
      <seq>gttcagctgctttagtattggtcagtgcgccagtgatagacttccagggcaagagaaactcagtgaaagtcacttgatggatcttctcaatggttctgaatatgtgctgacttatgaagacaaggatggtgactggatgctagtcggcgacgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaaaagctcagaggcaattgggctagctccaagggccataaacaagtgcaagaaccaaaattagcgactgaaagactaaccgtccaagggtttctacaacgtcaaccatcctttttttgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatataaccggtgataaattgtaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131195" stop="110388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130895" g_stop="130876" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="162" r_length="142" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129923" g_stop="129738" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="409" r_length="185" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129737" i_stop="128948" i_length="790">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128947" g_stop="128914" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="442" r_length="33" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E474025" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474025" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130895" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129738"/>
          <exon e_start="128947" e_stop="128914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACATAATAACTTCCAAGTTCTAACCTACTAATTACTAGTAATTGATCAAAGTAATATTCTAGAATTCAAAACAAGCAGGATGTAATGGAATGTTACTCCAAACTCCAATTTTTCCATGCTCGTGTAACGGGGTTTAGGATTGAAATAAATTGCATATAGCTTGAACCTTGGATTAGTTCGTTCAAGGGCTGTCAACGTTACAACTCTGGATCTGCCATTGCCAGTTCAATCCCCAAGAGAAGATCATTACTGCGTGCTCAGTTAGTTGACCTACAGTAGCAAGAAGGTTATCGTGGCAGGAGTTCCCTTTTTGTGGACTCGAGCAGAAAAGCTCAATCTGCACTCATTGCTCATTTATCGATGAATACTGAACAATCAAATGGAACCATTTGTTTCAACATAGGCTAGTAAAACATCAGAAGTGGGTCTCAATCATTCTAACATACCAGTGATATAGACTAAGATATTAGCAAGCACAAGGAGGGTTGTTTCAACATAGGCTATTTTCTAGAATATAATTTACGAGCACATTATACAGATGGGATAAATTTAACTCATCAGACATCCGTTACTCTGCACAAACATCAGAGTGACCAGTGGATAAATGGACATCTGAAAGATTGTCGGAGTAAAATCTATTGGCAGCACAGAGACAGCCTCTCAAGAGTTGCACCAGAAACAACTAAAAGAACAGTTGACACAGAGATCGC</genome_strand>
        <mrna_strand>GTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGCGCCAGTGATAGACTTCCAGGGCAAGAGAAACTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAATATGTGCTGACTTATGAAGACAAGGATGGTGACTGGATGCTAGTCGGCGACGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAACAAGTGCAAGAACCAAAATTAGCGACTGAAAGACTAACCGTCC-AAGGGTTTCTACAACGTCAACCATCCTTTTTTTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTGATAAATTGTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGAGAC-TAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551967" ref_strand="+" ref_description="SGN-E551967 [cTSB-2-G24]">
      <seq>gtaactatgcagcgctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgaggacaaggatggtgattggatgctagttggcgatgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaagagctcagaggcaattgggctagctccaagggccataaataagtgcaagaaccaaaattagtgactgaaagactaaccgtccaaagggtttctacaacgtcaaccatcctttttctgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatataaccggtcaaaaattgtactgtggctagtgtcttttgagtggcaatttttgcttgcacatgcaacctgcaagtttatttgcaaacatacattaatttttaagcatataaccaaccaactattattctgatgaaacataataacttccaagttctaacctanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131232" stop="129283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130932" g_stop="130876" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="199" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129923" g_stop="129594" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="591" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="609"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E551967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130932" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACATAATAACTTCCAAGTTCTAACCTACTA</genome_strand>
        <mrna_strand>GTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACATAATAACTTCCAAGTTCTAACCTANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403906" ref_strand="+" ref_description="SGN-E403906 [PPC-12-I1]">
      <seq>ttacaataggatgttcatagactcatgcaagagattgcggatcatgaaaagttcagaggctgttgggctaggtatgtcctgtgatcatgtttatgctatgtattacttctttttctctagtgttcagttgataaactatatatgcttcaaagtaggtttagaatgacattttttctcttgctttgcagctccaagggccataaacaagtgcaagaaccaaaattagcgactgaaagactaaccgtccaagggtttctacaacgtcaaccatcctttttgtgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatataaccggtgataaattgtactgtggctagtttctggaatttgagtggcaatttttgcttgcacatgcaacctgcaagtttatttgcaaaacataaattcatttttaagcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130418" stop="129340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130119" g_stop="129640" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E403906" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130119" e_stop="129640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCT----TTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGC-AAACATACATTAATTTTTAAGCATATAACCAACCAA</genome_strand>
        <mrna_strand>TTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGTTCAGAGGCTGTTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTATTACTTCTTTTTCTCTAGTGTTCAGTTGAT--A--A--A--CTATATATGCTTCAAAGTAGGTTTAGAATGACATTTTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAACAAGTGCAAGAACCAAAATTAGCGACTGAAAGACTAACCGTCC-AAGGGTTTCTACAACGTCAACCATCCTTTTTGTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTGATAAATTGTACTGTGGCTAGTTTCTGGAATTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAAACATAAATTCATTTTTAAGCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433705" ref_strand="+" ref_description="SGN-E433705 [STM-58-J24]">
      <seq>ttacaataggatgttcatagactcatgcaagagattgcggatcatgaaaagttcagaggctgttgggctaggtatgtcctgtgatcatgtttatgctatgtattacttctttttctctagtgttcagttgataaactatatatgcttcaaagtaggtttagaatgacattttttctcttgctttgcagctccaagggccataaacaagtgcaagaaccaaaattagcgactgaaagactaaccgtccaagggtttctacaacgtcaaccatcctttttgtgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatataaccggtgataaattgtactgtggctagtttctggaatttgagtggcaatttttgcttgcacatgcaacctgcaagtttatttgcaaaacataaattcatttttaagcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130418" stop="129340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130119" g_stop="129640" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E433705" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130119" e_stop="129640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCT----TTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGC-AAACATACATTAATTTTTAAGCATATAACCAACCAA</genome_strand>
        <mrna_strand>TTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGTTCAGAGGCTGTTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTATTACTTCTTTTTCTCTAGTGTTCAGTTGAT--A--A--A--CTATATATGCTTCAAAGTAGGTTTAGAATGACATTTTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAACAAGTGCAAGAACCAAAATTAGCGACTGAAAGACTAACCGTCC-AAGGGTTTCTACAACGTCAACCATCCTTTTTGTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTGATAAATTGTACTGTGGCTAGTTTCTGGAATTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAAACATAAATTCATTTTTAAGCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433706" ref_strand="+" ref_description="SGN-E433706 [STM-58-J24]">
      <seq>ctattcaaaatggatgcttaaaaatgaatttacttctttgcaaataaacttgcaggttgcatgtgcaagcaaaaattgccactcaaattccagaaactagccacagtacaatttatcaccggttatattttcttaaaccagctctctccctttcaggggatgctacacatctagtctaattccagatacaaacagggcacaaaaaggatggttgacgttgtagaaacccttggacggttagtctttcagtcgctaattttggttcttgcacttgtttatggcccttggagctgcaaagcaagagaaaaaatgtcattctaaacctactttgaagcatatatagtttatcaactgaacactagagaaaaagaagtaatacatagcataaacatgatcacaggacatacctagcccaacagcctctgaacttttcatgatccgcaatctcttgcatgagtctatgaacatcctattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="129371" stop="130418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129673" g_stop="130119" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="478" r_length="442" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E433706" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129673" e_stop="130119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAATAAACTTGCAGGTTGCATGTGCAAGCAAAAATTGCCACTCAAA----AGACACTAGCCACAGTACAATTTTTGACCGGTTATATTTTCTTAAACCAGCTCTCTCCCTTTCAGGGGATGCTACACATCTAGTCTAATTCCAGATACAAACAGGGCAGAAAAAGGATGGTTGACGTTGTAGAAACCCTTTGGACGGTTAGTCTTTCAGTCACTAATTTTGGTTCTTGCACTTATTTATGGCCCTTGGAGCTGCAAAGCAAGAGAAAGAATGTCATTCTAAACCCACTTTAAAGCATATATAGAGTACTACTTTATGAACTAGACACTAGAGAAAAATAAGTGCTACATAGCATAAACATGATCACAGGACATACCTAGCCCAATTGCCTCTGAGCTCTTCATGATCCGCAATCTCTTGCATGAGTCTATGAACATCCTATTGTAG</genome_strand>
        <mrna_strand>TTTGCAAATAAACTTGCAGGTTGCATGTGCAAGCAAAAATTGCCACTCAAATTCCAGAAACTAGCCACAGTACAATTTATCACCGGTTATATTTTCTTAAACCAGCTCTCTCCCTTTCAGGGGATGCTACACATCTAGTCTAATTCCAGATACAAACAGGGCACAAAAAGGATGGTTGACGTTGTAGAAACCC-TTGGACGGTTAGTCTTTCAGTCGCTAATTTTGGTTCTTGCACTTGTTTATGGCCCTTGGAGCTGCAAAGCAAGAGAAAAAATGTCATTCTAAACCTACTTTGAAGCATATAT--AG------TTTATCAACTGAACACTAGAGAAAAAGAAGTAATACATAGCATAAACATGATCACAGGACATACCTAGCCCAACAGCCTCTGAACTTTTCATGATCCGCAATCTCTTGCATGAGTCTATGAACATCCTATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369948" ref_strand="+" ref_description="SGN-E369948 [TUS-26-F17]">
      <seq>aaaaaggatagaaccctatgtttgaaccgtagtttcctcttgtacctttttcatccacagaaattatttatcaggcacctagcgaacattctttctcatttttctgatagccactttgagaattgttattgtttgtattgctgttatgttggtttgagtcttgagattgtgtgtgtgtctaagtgaaattataattttgtgactattattcaggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgaggacaaggatggtgattggatgctagttggcgatgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaagagctcagaggcaattgggctagctccaagggccataaataagtgcaagaaccaaaattagtgactgaaagactaaccgtccaaagggtttctacaacgtcaaccatcctttttctgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatataaccggtcaaaaattgtactgtggctagtgtcttttgagtggcaatttttgcttgccnaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130867" stop="129401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130567" g_stop="130213" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="417" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129923" g_stop="129703" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="638" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="667"/>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E369948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130567" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTT</genome_strand>
        <mrna_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256852" ref_strand="+" ref_description="SGN-E256852 [cLEG-40-L9]">
      <seq>aaaaaggatagaaccctatgtttgaaccgtagtttcctcttgtacctttttcatccacagaaattatttatcaggcacctagcgaacattctttctcatttttctgatagccactttgagaattgttattgtttgtattgctgttatgttggtttgagtcttgagattgtgtgtgtgtctaagtgaaattataattttgtgactattattcaggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgaggacaaggatggtgattggatgctagttggcgatgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaagagctcagaggcaattgggctagctccaagggccataaataagtgcaagaaccaaaattagtgactgaaagactaaccgtccaaagggtttctacaacgtcaaccatcctttttctgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctggtttaagaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130867" stop="129457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130567" g_stop="130213" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="417" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129923" g_stop="129757" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="584" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E256852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130567" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATAT</genome_strand>
        <mrna_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269550" ref_strand="+" ref_description="SGN-E269550 [cLEM-2-O11]">
      <seq>tcaaaacttacagtatctatgcagcgctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgaggacaaggatggtgattggatgctagttggcgatgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaagagctcacaggcaattgggctatctccaagggccataaataagtgcaagaaccaaaattagtgactgaaagactaaccgtccaaagggtttctacaacgtcaaccatcctttttctgccctgtttgtatctggaattagactagatgtgtagcatcccctgaaagggagagagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131244" stop="129471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130944" g_stop="130876" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="211" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="273" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129923" g_stop="129771" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="426" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E269550" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130944" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTG</genome_strand>
        <mrna_strand>TCAAAACTTACAGTATCTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCACAGGCAATTGGGCTAT.............................................................................................................................CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590337" ref_strand="+" ref_description="SGN-E590337 [43931]">
      <seq>cttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttttctattaattgcagatctgaagctgatggggaaaaaggaaacttgttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaaaaatttacccctcacacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatggtgaagggaaaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgagaaaagttgatatcaaaacttatagtaactatgcagagctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgcgccagtgatagacttccagggcaagagaaactcagtgaaagtcacttgatggatcttctcaatggttctgaatatgtgctgacttatgaagacaaggatggtgactggatgctagtcggcgacgttccttgggagatgttcatagactcatgcaagagattgcggatcatgaaaagctcagaggcaattgggctagctccaagggccataaacaagtgcaagaaccaaaattagcgactgaaagactaaccgtccaaagggtttctacaacggtcaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131809" stop="129540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131510" g_stop="131207" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="522" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="664" r_length="142" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="726" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129923" g_stop="129840" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="811" r_length="85" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E590337" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131510" e_stop="131207"/>
          <exon e_start="131093" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAAC-GTCAACCAT</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTTTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAAAAATTTACCCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGAAAAGTTGATATCAAAACTTATAGTAACTATGCAGAGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGCGCCAGTGATAGACTTCCAGGGCAAGAGAAACTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAATATGTGCTGACTTATGAAGACAAGGATGGTGACTGGATGCTAGTCGGCGACGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGCTCAGAGGCAATTGGGCTAG.............................................................................................................................CTCCAAGGGCCATAAACAAGTGCAAGAACCAAAATTAGCGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGGTCAACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612416" ref_strand="+" ref_description="SGN-E612416 [62178]">
      <seq>ttataatggaaaaaagttctgataagatttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaatttttcatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttgtctattaattgcagatctgaagctgatggggaaaaaggaaacttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaaaaatttactcctcacacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatggtgaagggaaaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgagaaaagttgatatcaaaacttatagtaactatgcagagctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgcgccagtgatagacttccagggcaagagaaactcagtgaaagtcacttgatggatcttctcaatggttctgaatatgtgctgacttatgaagacaaggatggtgattggatgctagtcggcgatgttccttgggagatgtccatagactcatgcaagagattgcggatcatgaaaagttcagaggctgttgggctagctccaagggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131836" stop="129747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131537" g_stop="131207" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="546" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130354" g_stop="130213" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="688" r_length="142" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130110" g_stop="130049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="750" r_length="62" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129923" g_stop="129911" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="763" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E612416" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131537" e_stop="131207"/>
          <exon e_start="131093" e_stop="130876"/>
          <exon e_start="130354" e_stop="130213"/>
          <exon e_start="130110" e_stop="130049"/>
          <exon e_start="129923" e_stop="129911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCAT</genome_strand>
        <mrna_strand>TTATAATGGAAAAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTTCATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTGTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAAC---TTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAAAAATTTACTCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGAAAAGTTGATATCAAAACTTATAGTAACTATGCAGAGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGCGCCAGTGATAGACTTCCAGGGCAAGAGAAACTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAATATGTGCTGACTTATGAAGACAAGGATGGTGATTGGATGCTAGTCGGCGATGTTCCTTGGGA......................................................................................................GATGTCCATAGACTCATGCAAGAGATTGCGGATCATGAAAAGTTCAGAGGCTGTTGGGCTAG.............................................................................................................................CTCCAAGGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258854" ref_strand="+" ref_description="SGN-E258854 [cLEG-41-K13]">
      <seq>aaaaaggatagaaccctatgtttgaaccgtagtttcctcttgtacctttttcatccacagaaattatttatcaggcacctagcgaacattctttctcatttttctgatagccactttgagaattgttattgtttgtattgctgttatgttggtttgagtcttgagattgtgtgtgtgtctaagtgaaattataattttgtgactattattcaggtcagtgtgccagtgataagattccagggcaagagaagctcagcgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgaggacaaggatggtgattggatgctagttggcgatgttccttgggagatgttcatagactcatgcaagagattgcggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="130867" stop="129775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130567" g_stop="130213" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130110" g_stop="130075" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="391" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E258854" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130567" e_stop="130213"/>
          <exon e_start="130110" e_stop="130075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGTAAGTTCCTATGCTCCAACATTTTATGTCAAACTTTTAAGTTTGAAGACAACATTATATTTAGTTGCATTTACTCATCGTTCTGGTTGGATTCTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCAT</genome_strand>
        <mrna_strand>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGCGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA......................................................................................................GATGTTCATAGACTCATGCAAGAGATTGCGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589663" ref_strand="+" ref_description="SGN-E589663 [43243]">
      <seq>cttcctttctttttcatctcttccaaagtttcttgaattcttgttgagaaattcatcttgtctgtttacttatttatgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaaaaaagttctgataagatttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaatttttcatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttgtctattaattgcagatctgaagctgatggggaaaaaggaaacttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaaaaatttactcctcacacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatggtgaagggaaaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgagaaaagttgatatcaaaacttatagtaactatgcagagctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgcgccagtgatagacttccaggccaagagaaactcagtgaaagtcacttgatggatcttctcaatggttctgaatatgtgctgacttatgaagaacaggatggtgattggatgctagtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131971" stop="129928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131672" g_stop="131207" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="681" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130354" g_stop="130228" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="808" r_length="127" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E589663" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131672" e_stop="131207"/>
          <exon e_start="131093" e_stop="130876"/>
          <exon e_start="130354" e_stop="130228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGG</genome_strand>
        <mrna_strand>CTTCCTTTCTTTTTCATCTCTTCCAAAGTTTCTTGAATTCTTGTTGAGAAATTCATCTTGTCTGTTTACTTATTTATGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAAAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTTCATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTGTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAAC---TTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAAAAATTTACTCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGAAAAGTTGATATCAAAACTTATAGTAACTATGCAGAGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGCGCCAGTGATAGACTTCCAGGCCAAGAGAAACTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAATATGTGCTGACTTATGAAGAACAGGATGGTGATTGGATGCTAGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747641" ref_strand="+" ref_description="SGN-E747641 [GI|3043902]">
      <seq>cattagatcattcaggaaaaatacactggctactaagaaaaatgatgatgaagggagaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgaggaaagttgatatcaaaacttacagtaactatgcagcgctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtcacttgatggatcttctcaatggttctgagtatgtgctgacttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131368" stop="129957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131069" g_stop="130876" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130354" g_stop="130257" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="292" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E747641" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131069" e_stop="130876"/>
          <exon e_start="130354" e_stop="130257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAG</genome_strand>
        <mrna_strand>CATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340683" ref_strand="+" ref_description="SGN-E340683 [cTOF-1-P1]">
      <seq>ttcttgtagagaaattcactcttgtctgtttactaatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtttatcagaaccttctttaatggaaagaaagttctgataagatttcttcttcttcttcttcctctgttctaaaccttaaggagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatcggatttgtctattaattgcagatctgaagctgatagggaaaacgggaacttgttgttttccccaaaaagagggaatggaggttcaaaccctgttgaagaaaaaaagcctatccctcatacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatgatgaagggagaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgaggaaagttgatatcaaaacttacagtaactatgcagcgctctcatcagcacttgaaaagatgttcagctgctttagtattggtcagtgtgccagtgataagattccagggcaagagaagctcagtgaaagtacttggatggatcttctcaatggttctgagtatgtgctgacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131935" stop="129960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131635" g_stop="131207" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="649" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130354" g_stop="130260" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="744" r_length="95" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E340683" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131635" e_stop="131207"/>
          <exon e_start="131093" e_stop="130876"/>
          <exon e_start="130354" e_stop="130260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTAGAGAAATTCA-TCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAG-AAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTATAGTTTCTCCCTTTACATGCAGGCAATGTAGTATTTGTTTAAGCTTTTCAGAAACAAGGTTGTGTATTTTTAGAAAAGCTGAGTTTCAAATACATTATTTAACACAAATATACCCAGAAGCTTCTAGGAGGACAGTTCAATCTCTAAACAAACAAAGGTAGGGGTAAGGTTTGGGATTACATAGGATATGTTGTTATTTGATGTATTTTTTTTTAAAAAAACTAAGAATAATGCATTCAAGTTGGCTTGGATACCCCACAGTTATAGAATGGAAAAACAAGAATAATTGATAGGAGTATATTGAGAAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTAT</genome_strand>
        <mrna_strand>TTCTTGTAGAGAAATTCACTCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTACTTGGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589514" ref_strand="+" ref_description="SGN-E589514 [43090]">
      <seq>cctttctcttatcacttaaaaaaaaaaaaaacttcctttctttttcatctcttccaaagtttcttgaattcttgttgagaaattcatcttggtctgtttacttatttatgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaaaaaagttctgataagatttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaatttttcatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttgtctattaattgcagatctgaagctgatggggaaaaaggaaacttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaaaaatttactcctcacacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatggtgaagggaaaacaggttcaagttgcctttatgttaaggttagcatggatggtgctccatatctgagaaaagttgatatcaaaacttatagtaactatgcagagctctcatcagcacttgacaaagatgttcagctgcttttagtattggtcagtgcgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131979" stop="130574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131703" g_stop="131207" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="715" r_length="220" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E589514" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131703" e_stop="131207"/>
          <exon e_start="131093" e_stop="130876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTT-GTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGA-AAAGATGTTCAGCTGC-TTTAGTATTG</genome_strand>
        <mrna_strand>CCTTTCTCTTATCACTTAAAAAAAAAAAAAACTTCCTTTCTTTTTCATCTCTTCCAAAGTTTCTTGAATTCTTGTTGAGAAATTCATCTTGGTCTGTTTACTTATTTATGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAAAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTTCATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTGTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAAC---TTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAAAAATTTACTCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGAAAAGTTGATATCAAAACTTATAGTAACTATGCAGAGCTCTCATCAGCACTTGACAAAGATGTTCAGCTGCTTTTAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592710" ref_strand="+" ref_description="SGN-E592710 [35924]">
      <seq>cttaaaaaaaaaaaaaacttcctttctttttcatctcttccaaagtttcttgaatgcgttgttgagaaattcatcttgtctgtttacttatttatgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaaaaaagttctgataagatttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaatttttcatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttgtctattaattgcagatctgaagctgatggggaaaaaggaaacttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaaaaatttactcctcacacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatggtgaagggaaaacaggttcaaggttgcctttatgttaaggttagcatggatggtgctccatatctgagaaaagttgatatcaaaactttatagtaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131979" stop="130624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131689" g_stop="131207" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130924" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="653" r_length="172" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E592710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131689" e_stop="131207"/>
          <exon e_start="131093" e_stop="130924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTC-TTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAA-GTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAAC-TTACAGTAACTATG</genome_strand>
        <mrna_strand>CTTAAAAAAAAAAAAAACTTCCTTTCTTTTTCATCTCTTCCAAAGTTTCTTGAATGCGTTGTTGAGAAATTCATCTTGTCTGTTTACTTATTTATGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAAAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTTCATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTGTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAAC---TTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAAAAATTTACTCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCAAGGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGAAAAGTTGATATCAAAACTTTATAGTAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603939" ref_strand="+" ref_description="SGN-E603939 [67129]">
      <seq>cttcctttctcttataacttaaaaaaaaaaaagttcgtttctttttcatctcttccatagtttcttgaattcttgttgagaaattcatcttgtctgtttacttatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaagaaagttctgataagatttcttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttttctattaattgcagatctgaagctgatggggaaaaaggaaacttgttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaaaaacaaatttaaccctcacacttcaaaggcacaagtggtaggatggncaccaattagatcattcaggaaaaatacactgggtactaagaaaaatgatggtgaagggaaaacaggttcacgttgcctttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131979" stop="130688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131706" g_stop="131207" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130988" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="608" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E603939" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131706" e_stop="131207"/>
          <exon e_start="131093" e_stop="130988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGA--T-TTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAA-AAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTT</genome_strand>
        <mrna_strand>CTTCCTTTCTCTTATAAC--TTAAAAAAAAAAAAGTTCGTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTTGAGAAATTCATCTTGTCTGTTTACTTATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAGAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTTTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAAAAACAAATTTAACCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGNCACCAATTAGATCATTCAGGAAAAATACACTGGGTACTAAGAAAAATGATGGTGAAGGGAAAACAGGTTCACGTTGCCTTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559819" ref_strand="+" ref_description="SGN-E559819 [19375]">
      <seq>ctttctcttataacttaaaaaaaaaaaagttcgtttctttttcatctcttccatagtttcttgaattcttgttgagaaattcatcttgtctgtttacttatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaagaaagttctgataagatttcttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttttctattaattgcagatctgaagctgatggggaaaaaggaaacttgttgttttccccaaaaagagggaatggaggttcaaagcctgttgaagaacaacagaatttacccctcacacttcaaaggcacaagtggtaggatggncaccaattagatcattcaggaaaaatacactggctactaagaacaaatgatggtgaagggaaaaacaggttcaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131979" stop="130698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131702" g_stop="131207" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="0.77"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="130998" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="597" r_length="98" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E559819" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131702" e_stop="131207"/>
          <exon e_start="131093" e_stop="130998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGA--T-TTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAA-AA-AAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAA-AAATGATGATGAAGGG-AGAACAGGTTCAAGTTG</genome_strand>
        <mrna_strand>CTTTCTCTTATAAC--TTAAAAAAAAAAAAGTTCGTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTTGAGAAATTCATCTTGTCTGTTTACTTATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAGAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTTTCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAAGCCTGTTGAAGAACAACAGAATTTACCCCTCACACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGNCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAACAAATGATGGTGAAGGGAAAAACAGGTTCAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271358" ref_strand="+" ref_description="SGN-E271358 [cLEM-5-I5]">
      <seq>tttactaatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtttatcagaaccttctttaatggaaagaagttctgataagatttcttcttcttcttcttcctctgttctaaaccttaaggagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatcggatttgtctattaattgcagatctgaagctgatagggaaaacgggaacttgttgttttccccaaaaagagggaatggaggttcaaaccctgttgaagaaaaaaagcctatccctcatacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131908" stop="130720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131608" g_stop="131207" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="131020" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="476" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E271358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131608" e_stop="131207"/>
          <exon e_start="131093" e_stop="131020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATG</genome_strand>
        <mrna_strand>TTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272541" ref_strand="+" ref_description="SGN-E272541 [cLEM-21-E2]">
      <seq>aacctcttcctttctcttgtaactttttctttaaaaaaagtttttttctttttcatctcttccatagtttcttgaattcttgtagagaaattcatcttgtctgtttactaatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtttatcagaaccttctttaatggaaagaagttctgataagatttcttcttcttcttcttcctctgttctaaaccttaaggagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatcggatttgtctattaattgcagatctgaagctgatagggaaaacgggaacttgttgttttccccaaaaagagggaatggaggttcaaaccctgttgaagaaaaaaagcctatccctcatacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggctactaagaaaaatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132011" stop="130721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131711" g_stop="131207" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="131021" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="578" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E272541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131711" e_stop="131207"/>
          <exon e_start="131093" e_stop="131021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGAT</genome_strand>
        <mrna_strand>AACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272257" ref_strand="+" ref_description="SGN-E272257 [cLEM-19-M14]">
      <seq>tctgtaccattagaacatgattatataggtttatcagaaccttctttaatggaaagaagttctgataagatttcttcttcttcttcttcctctgttctaaaccttaaggagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatcggatttgtctattaattgcagatctgaagctgatagggaaaacgggaacttgttgttttccccaaaaagagggaatggaggttcaaaccctgttgaagaaaaaaagcctatccctcatacttcaaaggcacaagtggtaggatggccaccaattagatcattcaggaaaaatacactggcttctaagaaaaatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="131880" stop="130721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131580" g_stop="131207" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="131021" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="447" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E272257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131580" e_stop="131207"/>
          <exon e_start="131093" e_stop="131021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGAT</genome_strand>
        <mrna_strand>TCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTTCTAAGAAAAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358173" ref_strand="+" ref_description="SGN-E358173 [cLHT-23-K5]">
      <seq>ctcgtgccgttcctttctcttgtaactttttctttaaaaaaagttcctttctttttcatatcttccattgtttctcgaattcttgtagagaaattcatcttgtctgtttacttatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtttatcagaaccttctttaatggaaagaagttctgataagatttcttcttcttcctctgttctcaaccttaaggagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaatgggatttgtctattaattgcagatctgaagctgatagggaaaacgggaacttgttgttttccccaaaaagagggaatggaggttcaaaccctgttgaagaaaaaaagcctatccctcatacttcaaaggcacaagtggtaggatggccaccaattagatcattcaagaaaaatacactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132005" stop="130739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131714" g_stop="131207" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131093" g_stop="131039" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="557" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E358173" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131714" e_stop="131207"/>
          <exon e_start="131093" e_stop="131039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGTTAGTAACTTTTCTCTTTTTTCTTAAATTCTTGAATTTTTGTTAGTTTGGGTAACAAATTTTTGTCTGCAATTATGGTTAAAGTTTGGTTATGTTTTGTGTTATGGAATTAGGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCT</genome_strand>
        <mrna_strand>CTCGTGCCGTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTCCTTTCTTTTTCATATCTTCCATTGTTTCTCGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTTATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGA-----T-TTCTTCTTCTTCCTCTGTTCTCAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATGGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA.................................................................................................................GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAAGAAAAATACACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557210" ref_strand="+" ref_description="SGN-E557210 [20940]">
      <seq>cacagaaaaagaatttcttgataagcatctggaatagtagttccaatagtactatagtacacactacacagttcatttattccaaaaagaagtctacaaaagcaccaaaagaagtctcttttctgcatcaacaaaattaaaccaccttcctttctcttataacttaaaaaaaaaaaagttcgtttctttttcatctcttccatagtttcttgaattcttgttgagaaattcatcttgtctgtttacttatttgtgctcaactttccatgtctgtaccattagaacatgattatataggtctatcagaaccttctttaatggaagaaagttctgataagatttcttcttcttcttcttcttcctctgttctcaacctgaaagagactgagctgagacttgggttgcctggttctgagtctcatggggtttctctttttggcaaagatttggaccctttaagcaattttacatcaagaacaaaaaggggtttttctgatgcaattgatgcatctggaaaaatgggattttctattaattgcagatctgaagctgatggggaaaaaggaaactgtgttttcccaaaaagagggaatggaggtcaagagcctgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="132139" stop="130935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131833" g_stop="131235" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="614" r_length="594" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E557210" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131833" e_stop="131235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCATATGGAATAGTAGTTCCAATATTACTATAGTACACACTACACAGTTCATTTATTCCAAAAAGAAGTCTACAAAAGCACCAAAAGAAGTCTCTTTTCTGCATCAACAAAATTAAACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGA--T-TTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGG-AAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAG</genome_strand>
        <mrna_strand>ATAAGCATCTGGAATAGTAGTTCCAATAGTACTATAGTACACACTACACAGTTCATTTATTCCAAAAAGAAGTCTACAAAAGCACCAAAAGAAGTCTCTTTTCTGCATCAACAAAATTAAACCA-C-CTTCCTTTCTCTTATAAC--TTAAAAAAAAAAAAGTTCGTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTTGAGAAATTCATCTTGTCTGTTTACTTATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTCTATCAGAACCTTCTTTAATGGAAGAAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCTTCCTCTGTTCTCAACCTGAAAGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAAATGGGATTT-TCTATTAATTGCAGATCTGAAGCTGATGGGGAAAAAGGAAAC-TG-TGTTTT-CCCAAAAAGAGGGAATGGAGGTCAAGAGCCTG-TGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460065" ref_strand="+" ref_description="SGN-E460065 [cPRO-29-H16]">
      <seq>ggcgtcctctctatctataaccctcaaattcaccttacttttttcctcagtaactcttccaccactaacatcaaccaccagaagaaaaatctcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcaagtctcaaaaaccctcaatcgtctcatcaaaagagatctaattgctgcctacaaagaacttctacgacaagacctttgcgatttggccctcaaagtattcccagccgttcgatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggatgaatctactgttagggcttatgaattgatgaaatagagtggatggggttctagatttgagattgatgaatatgtagctagggttttgaggagagggtttaagagatttggtacagaataaatggctgatgaagttgatcaacaattacagagatcgtcgcgattagtttaggggaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142880" stop="141586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142580" g_stop="141886" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E460065" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142580" e_stop="141886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCCAGATTAGTGTAGGAGAAACATT</genome_strand>
        <mrna_strand>GGCGTCCTCTCTATCTATAACCCTCAAATTCACCTTACTTTTTTCCTCAGTAACTCTTCCACCACTAACATCAACCACCAGAAGAAAAATCTCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCAAGTCTCAAAAACCCTCAATCGTCTCATCAAAAGAGATCTAATTGCTGCCTACAAAGAACTTCTACGACAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCGATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGATGAATCTACTGTTAGGGCTTATGAATTGATGAAATAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAGGGTTTTGAGGAGAGGGTTTAAGAGATTTGGTACAGAATAAATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCGCGATTAGTTTAGGGGAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459823" ref_strand="+" ref_description="SGN-E459823 [cPRO-29-E15]">
      <seq>tcaaatccaccatgtcatggcgtcctctctatctacaaccctcaaattcaccttacaacatttttcagtaactcttccaccactaacatcaaccaccacaagaaaaatctcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatctaagctcaagtctcaaaaaccctcagtcgactcatcaaaacagatctaattgctgcctacaaagaacttctacgacaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggatggtgagggcgttggttgaaggtgaacaggttgaatctactgttagggtttatgaattgatgaaaaagagtggatggggctctagatttgagattgatgaatatgtagctaaggtgttaaggagaaggtttaagagatttggtaaagaagatatggctgatgaagttgatcaacaattacagagatcgtcgcgattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142897" stop="141601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142597" g_stop="141901" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E459823" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142597" e_stop="141901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCACCAT-TCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCCAGATTAG</genome_strand>
        <mrna_strand>TCAAATCCACCATGTCATGGCGTCCTCTCTATCTACAACCCTCAAATTCACCTTACAACATTTTTCAGTAACTCTTCCACCACTAACATCAACCACCACAAGAAAAATCTCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCTAAGCTCAAGTCTCAAAAACCCTCAGTCGACTCATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGACAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGATGGTGAGGGCGTTGGTTGAAGGTGAACAGGTTGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGCTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTGTTAAGGAGAAGGTTTAAGAGATTTGGTAAAGAAGATATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCGCGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322162" ref_strand="+" ref_description="SGN-E322162 [cTOB-24-I20]">
      <seq>caccattcatggcttcctctctatctacaaacctcaaattcaccttacaacattcttctgtaactcttccaccaccaaaatcaaccaccagaagaaaaatctcagtacgatgcggtccacgaagcaaccgtggacctctagttaagggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttctcaaatcgaagctcaagtctcaaaaaccctaaatcgtcttatcaaaacagatctaattgctgcctacaaagaacttctacggcaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttagggctttatgctgatatggtcttagctttgacccggacaggttttgctgaacctatcgatgaattgatttgtgatttggagaaagtgggaaggattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggtggaatctactgttagggtttatgaattgatgaaaaagagtggatggggttctagatttgagattgatgaatatgtagctaaggttttaagaagagggtttaagagatttggtaaagaagaatggctgatgaagttgatcacaattacagagatcgtccagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142890" stop="141603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142590" g_stop="141903" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E322162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142590" e_stop="141903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCCAGATT</genome_strand>
        <mrna_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAG-AATGGCTGATGAAGTTGATC-ACAATTACAGAGATCGTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322253" ref_strand="+" ref_description="SGN-E322253 [cTOB-24-L18]">
      <seq>caccattcatggcttcctctctatctacaaacctcaaattcaccttacaacattcttctgtaactcttccaccaccaaaatcaaccaccagaagaaaaatctcagtacgatgcggtccacgaagcaaccgtggacctctagttaagggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttctcaaatcgaagctcaagtctcaaaaaccctaaatcgtcttatcaaaacagatctaattgctgcctacaaagaacttctacggcaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttagggctttatgctgatatggtcttagctttgacccggacaggttttgctgaacctatcgatgaattgatttgtgatttggagaaagtgggaaggattgagtgtgatgataagtcgctggtaaagttggtgagggcgttggttgaaggtgaacaggtggaatctactgttacggtttatgaattgatgaaaaagagtggatggggttctagatttgagattgatgaatatgtagctaaggttttaagaagacggtttaagagatttggtaaagaagaaatggctgatgaagttgatcaacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142890" stop="141620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142590" g_stop="141920" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E322253" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142590" e_stop="141920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTA</genome_strand>
        <mrna_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAAGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTACGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGACGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463666" ref_strand="+" ref_description="SGN-E463666 [cPRO-15-K10]">
      <seq>ctcaaatccaccattcatggcgtcctctctatctacaaccctcaaattcaccttacaacatttttcagtaactcttccaccactaacatcaaccaccagaagaaaaatctcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcaagtctcaaaaaccctcaatcgtctcatcaaaacagatctaattgctgcctacaaagaacttctacgacaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggttgaatctactgttagggtttatgaattgatgaaaaagagtggatggggttctagatttgagattgatgaatatgtagctaacgttttaaggagagggtttaagagatttggtaaagaagaaatggctgatgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142898" stop="141631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142598" g_stop="141931" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E463666" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142598" e_stop="141931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTG</genome_strand>
        <mrna_strand>CTCAAATCCACCATTCATGGCGTCCTCTCTATCTACAACCCTCAAATTCACCTTACAACATTTTTCAGTAACTCTTCCACCACTAACATCAACCACCAGAAGAAAAATCTCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCAAGTCTCAAAAACCCTCAATCGTCTCATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGACAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTTGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAACGTTTTAAGGAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460044" ref_strand="+" ref_description="SGN-E460044 [cPRO-29-D14]">
      <seq>ctcaaatccaccattcatggcgtcctctctatctacaaccctcaaattcaccttacaacatttttcagtaactcttccaccactaacatcaaccaccagaagaaaaatctcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcaagtctcaaaaaccctcaatcgtctcatcaaaacagatctaattgctgcctacaaagaacttctacgacaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggttgaatctactgttagggtttatgaattgatgaaaaagagtggatggggttctagatttgagattgatgaatatgtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142898" stop="141689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142598" g_stop="141989" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E460044" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142598" e_stop="141989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCT</genome_strand>
        <mrna_strand>CTCAAATCCACCATTCATGGCGTCCTCTCTATCTACAACCCTCAAATTCACCTTACAACATTTTTCAGTAACTCTTCCACCACTAACATCAACCACCAGAAGAAAAATCTCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCAAGTCTCAAAAACCCTCAATCGTCTCATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGACAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTTGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322335" ref_strand="+" ref_description="SGN-E322335 [cTOB-24-K14]">
      <seq>caccattcatggcttcctctctatctacaaacctcaaattcaccttacaacattcttctgtaactcttccaccaccaaaatcaaccaccagaagaaaaatctcatcacgatgcggtccacgaagcaaccgtggacctctagttaagggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttctcaaatcgaagctcaagtctcaaaaaccctaaatcgtcttatcaaaacagatctaattgctgcctacaaagaacttctacggcaagacctttgcgatttggccctcaaagtattcccagccgctcgatcggaatgtgatgtccctgatttagggctttatgctgatatggtcttagctttgacccggacaggttttgctgaacctatcgatgaattgatttgtgatttggagaaagtgggaaggattgagtgtgatgataactctctggtaaggctggtgagggcgttggttgaaagagaacaggtggaatctactgttagggtttatgaattgatgaaagatagtggatggggttctagatttgagattgatgaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142890" stop="141693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142590" g_stop="141993" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E322335" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142590" e_stop="141993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGT</genome_strand>
        <mrna_strand>CACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCATCACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGCTCGATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAACTCTCTGGTAAGGCTGGTGAGGGCGTTGGTTGAAAGAGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAGATAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202686" ref_strand="+" ref_description="SGN-E202686 [cLEC-19-D14]">
      <seq>accagtggaactcaaatccaccattcatggcttcctctctatctacaaacctcaaattcaccttacaacattcttctgtaactcttccaccaccaaaatcaaccaccagaagaaaaatctcagtacgatgcggtccacgaagcaaccgtggacctctagttaagggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttctcaaatcgaagctcaagtctcaaaaaccctaaatcgtcttatcaaaacagatctaattgctgcctacaaagaacttctacggcaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttagggctttatgctgatatggtcttagctttgacccggacaggttttgctgaacctatcgatgaattgatttgtgatttggagaaagtgggaaggattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggtggaatctactgttagggtttatgaattgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142908" stop="141733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142608" g_stop="142033" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E202686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142608" e_stop="142033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTGGAACTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAA</genome_strand>
        <mrna_strand>ACCAGTGGAACTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412606" ref_strand="+" ref_description="SGN-E412606 [STM-16-F11]">
      <seq>cctcgtgccgaatcggcacgaggctcaaatccaccattcatggcgtcctctctatctacaaacctcaaattcaccttacaacattcttctgcaacacttccaccaccaaaatcaaccaccagaagaaaaatatcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactgagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcacgtctcaaaaaccctcaatcgtcttatcaaaacagatctaattgcagcctacaaagaacttcttcgtcaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggttgaatctactgttagggtttatgaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142898" stop="141738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142597" g_stop="142038" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="584" r_length="560" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E412606" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142597" e_stop="142038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGAT</genome_strand>
        <mrna_strand>TCAAATCCACCATTCATGGCGTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGCAACACTTCCACCACCAAAATCAACCACCAGAAGAAAAATATCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTGAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCACGTCTCAAAAACCCTCAATCGTCTTATCAAAACAGATCTAATTGCAGCCTACAAAGAACTTCTTCGTCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTTGAATCTACTGTTAGGGTTTATGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459812" ref_strand="+" ref_description="SGN-E459812 [cPRO-29-C13]">
      <seq>accctcaaattcaccttacaatagttctcagtaactcttccaccactaacatcaaccaccagaagaaaaatctcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcaagtctcaaaaaccctcaatcgtctcatcaaaacagatctaattgctgcctacaaagaacttctacgacaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggtaaggttggtgagggcgttggttgaaggtgaacaggttgaatctactgttagggtttatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142861" stop="141739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142561" g_stop="142039" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E459812" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142561" e_stop="142039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGA</genome_strand>
        <mrna_strand>ACCCTCAAATTCACCTTACAATAGTTCTCAGTAACTCTTCCACCACTAACATCAACCACCAGAAGAAAAATCTCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCAAGTCTCAAAAACCCTCAATCGTCTCATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGACAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTTGAATCTACTGTTAGGGTTTATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470904" ref_strand="+" ref_description="SGN-E470904 [cSTB-21-O7]">
      <seq>cctcgtgccgaatcggcacgaggctcaaatccaccattcatggcgtcctctctatctacaaacctcaaattcaccttacaacattcttctgcaacacttccaccaccaaaatcaaccaccagaagaaaaatatcagtgcgatgcggtccacgaagcaaccgtggacctctagtcaaaggccgaatactgagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttcccaaatcgaagctcacgtctcaaaaaccctcaatcgtcttatcaaaacagatctaattgcagcctacaaagaacttcttcgtcaagacctttgcgatttggccctcaaagtattcccagccgttcaatcggaatgtgatgtccctgatttggggctttatgctgatatggtcttagctttgacccggacgggttttgctgaacatatcgatgaattgatttgtgatttggagaaagtgggaacgattgagtgtgatgataagtcgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142898" stop="141804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142597" g_stop="142104" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="518" r_length="494" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E470904" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142597" e_stop="142104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGT</genome_strand>
        <mrna_strand>TCAAATCCACCATTCATGGCGTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGCAACACTTCCACCACCAAAATCAACCACCAGAAGAAAAATATCAGTGCGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTCAAAGGCCGAATACTGAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCCCAAATCGAAGCTCACGTCTCAAAAACCCTCAATCGTCTTATCAAAACAGATCTAATTGCAGCCTACAAAGAACTTCTTCGTCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTGGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACGGGTTTTGCTGAACATATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAACGATTGAGTGTGATGATAAGTCGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202826" ref_strand="+" ref_description="SGN-E202826 [cLEB-1-E2]">
      <seq>gcacgagctcaaatccaccattcatggcttcctctctatctacaaacctcaaattcaccttacaacattcttctgtaactcttccaccaccaaaatcaaccaccagaagaaaaatctcagtacgatgcggtccacgaagcaaccgtggacctctagttaagggccgaatactaagcatcgaagcaatccaagcgattcaagctctaaaacgagctcaaagaactgacccttctcaaatcgaagctcaagtctcaaaaaccctaaatcgtcttatcaaaacagatctaattgctgcctacaaagaacttctacggcaagacctttgcgatttggccctcaaagtattcccagccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="-" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142901" stop="141951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142605" g_stop="142251" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="-" ref_id="SGN-E202826" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142605" e_stop="142251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAACTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGT</genome_strand>
        <mrna_strand>GCACGAGCTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281509" ref_strand="+" ref_description="SGN-E281509 [cLEL-1-B9](-)">
      <seq>ttttgataagacgatttagggtttttgagacttgagcttcgatttgagaagggtcagttctttgagctcgttttagagcttgaatcgcttggattgcttcgatgcttagtattcggcccttaactagaggtccacggttgcttcgtggaccgcatcgtactgagatttttcttctggtggttgattttggtggtggaagagttacagaagaatgttgtaaggtgaatttgaggtttgtagatagagaggaagccatgaatggtggatttgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0046F15-7AmDT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C03HBa0046F15.1" temp_strand="+" temp_description="C03HBa0046F15.1  AC238443.1 htgs_phase:2 submitted_to_sgn_as:gi|260903614|gb|AC238443.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0046f15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="142027" stop="142901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142327" g_stop="142605" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0046F15.1" gen_strand="+" ref_id="SGN-E281509" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0046F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142327" e_stop="142605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATAAGACGATTTAGGGTTTTTGAGACTTGAGCTTCGATTTGAGAAGGGTCAGTTCTTTGAGCTCGTTTTAGAGCTTGAATCGCTTGGATTGCTTCGATGCTTAGTATTCGGCCCTTAACTAGAGGTCCACGGTTGCTTCGTGGACCGCATCGTACTGAGATTTTTCTTCTGGTGGTTGATTTTGGTGGTGGAAGAGTTACAGAAGAATGTTGTAAGGTGAATTTGAGGTTTGTAGATAGAGAGGAAGCCATGAATGGTGGATTTGAGTTCCACT</genome_strand>
        <mrna_strand>TTTTGATAAGACGATTTAGGGTTTTTGAGACTTGAGCTTCGATTTGAGAAGGGTCAGTTCTTTGAGCTCGTTTTAGAGCTTGAATCGCTTGGATTGCTTCGATGCTTAGTATTCGGCCCTTAACTAGAGGTCCACGGTTGCTTCGTGGACCGCATCGTACTGAGATTTTTCTTCTGGTGGTTGATTTTGGTGGTGGAAGAGTTACAGAAGAATGTTGTAAGGTGAATTTGAGGTTTGTAGATAGAGAGGAAGCCATGAATGGTGGATTTGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>397</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23" PGL_stop="2042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23" e_stop="180"/>
            <exon e_start="1145" e_stop="1201"/>
            <exon e_start="1464" e_stop="2042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="23" e_stop="180" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="181" i_stop="1144" i_length="964"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1145" e_stop="1201" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1202" i_stop="1463" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="1464" e_stop="2042" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23" stop="180"/>
              <exon start="1145" stop="1201"/>
              <exon start="1464" stop="1982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113" stop="180"/>
              <exon start="1145" stop="1201"/>
              <exon start="1464" stop="2042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133" stop="180"/>
              <exon start="1145" stop="1201"/>
              <exon start="1464" stop="1975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1146" stop="1201"/>
              <exon start="1464" stop="1854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1146" stop="1201"/>
              <exon start="1464" stop="1854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1507" stop="1984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTCGGATCCAAGAGCAATAAGGTGCCTTATGTTAAAGCACTTCTCAATTTTCTAAATCAGCATTCTAACTTGTCAAACACAGTACTATGGACTCCATCAACCACTCGTGTCGCTGCACTTTATGCTGCTGCAGACGCTTATGTAATGAATTCTCAG : GGACTTGGAGAAACATTTGGGAGAGTGACAATTGAAGCAATGGCATTTGGTCTTCCT : GTGCTGGGAACAGATGCTGGAGGCACAAAGGAGATTGTTGAACATAACGTAACAGGTCTTCTTCATTCTTTGGGACGTCCAGGCACTCAAGTCCTCGCCCAAAATCTCCAGTATTTGCTGAACAATCCCTCGGAAAGGCAACGATTGGGAAGCAATGGAAGAAAGAAAGTAAAGGATATGTACCTAAAGAAGCACATGTACAGGAGATTCGGAGAAGTACTATACGACTGCATGAGAATAAAATAAGATCGAATGCAGACCATTTTTTTCTGTTTAAACATTTTTCCTGTATTGCTGTAAGCTCTTCCCTTAGAAAACACAGATCAAGAATCAGTCTTTTGTACAGTACGAAAGATAGTTGTGTTTATTAATGGAGAGATTCTTCTTCCTTCTTTTTTTACTGTTGTACCAGCCCAGCTACCTGTTCCCATCTGATGTCTAGTACTGCATTGGATTCGCGTTACATAGGGCGAACAATTTTTTCATATAGCATGTATGTATGTTTTTATCAACACAACACAAGTAATTAAAATCTTTCTGATTTATAACTAACTGTACAATCAAAACAAACTCTTTTTA</gDNA_template>
            <first_frame> Q  S  D  P  R  A  I  R  C  L  M  L  K  H  F  S  I  F  *  I  S  I  L  T  C  Q  T  Q  Y  Y  G  L  H  Q  P  L  V  S  L  H  F  M  L  L  Q  T  L  M  *  *  I  L  R :   D  L  E  K  H  L  G  E  *  Q  L  K  Q  W  H  L  V  F  L :   C  W  E  Q  M  L  E  A  Q  R  R  L  L  N  I  T  *  Q  V  F  F  I  L  W  D  V  Q  A  L  K  S  S  P  K  I  S  S  I  C  *  T  I  P  R  K  G  N  D  W  E  A  M  E  E  R  K  *  R  I  C  T  *  R  S  T  C  T  G  D  S  E  K  Y  Y  T  T  A  *  E  *  N  K  I  E  C  R  P  F  F  S  V  *  T  F  F  L  Y  C  C  K  L  F  P  *  K  T  Q  I  K  N  Q  S  F  V  Q  Y  E  R  *  L  C  L  L  M  E  R  F  F  F  L  L  F  L  L  L  Y  Q  P  S  Y  L  F  P  S  D  V  *  Y  C  I  G  F  A  L  H  R  A  N  N  F  F  I  *  H  V  C  M  F  L  S  T  Q  H  K  *  L  K  S  F  *  F  I  T  N  C  T  I  K  T  N  S  F   </first_frame>
            <second_frame>  S  R  I  Q  E  Q  *  G  A  L  C  *  S  T  S  Q  F  S  K  S  A  F  *  L  V  K  H  S  T  M  D  S  I  N  H  S  C  R  C  T  L  C  C  C  R  R  L  C  N  E  F  S   : G  T  W  R  N  I  W  E  S  D  N  *  S  N  G  I  W  S  S   : C  A  G  N  R  C  W  R  H  K  G  D  C  *  T  *  R  N  R  S  S  S  F  F  G  T  S  R  H  S  S  P  R  P  K  S  P  V  F  A  E  Q  S  L  G  K  A  T  I  G  K  Q  W  K  K  E  S  K  G  Y  V  P  K  E  A  H  V  Q  E  I  R  R  S  T  I  R  L  H  E  N  K  I  R  S  N  A  D  H  F  F  L  F  K  H  F  S  C  I  A  V  S  S  S  L  R  K  H  R  S  R  I  S  L  L  Y  S  T  K  D  S  C  V  Y  *  W  R  D  S  S  S  F  F  F  Y  C  C  T  S  P  A  T  C  S  H  L  M  S  S  T  A  L  D  S  R  Y  I  G  R  T  I  F  S  Y  S  M  Y  V  C  F  Y  Q  H  N  T  S  N  *  N  L  S  D  L  *  L  T  V  Q  S  K  Q  T  L  F  </second_frame>
            <third_frame>   V  G  S  K  S  N  K  V  P  Y  V  K  A  L  L  N  F  L  N  Q  H  S  N  L  S  N  T  V  L  W  T  P  S  T  T  R  V  A  A  L  Y  A  A  A  D  A  Y  V  M  N  S  Q  :  G  L  G  E  T  F  G  R  V  T  I  E  A  M  A  F  G  L  P  :  V  L  G  T  D  A  G  G  T  K  E  I  V  E  H  N  V  T  G  L  L  H  S  L  G  R  P  G  T  Q  V  L  A  Q  N  L  Q  Y  L  L  N  N  P  S  E  R  Q  R  L  G  S  N  G  R  K  K  V  K  D  M  Y  L  K  K  H  M  Y  R  R  F  G  E  V  L  Y  D  C  M  R  I  K  *  D  R  M  Q  T  I  F  F  C  L  N  I  F  P  V  L  L  *  A  L  P  L  E  N  T  D  Q  E  S  V  F  C  T  V  R  K  I  V  V  F  I  N  G  E  I  L  L  P  S  F  F  T  V  V  P  A  Q  L  P  V  P  I  *  C  L  V  L  H  W  I  R  V  T  *  G  E  Q  F  F  H  I  A  C  M  Y  V  F  I  N  T  T  Q  V  I  K  I  F  L  I  Y  N  *  L  Y  N  Q  N  K  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25" stop="180"/>
                    <exon start="1145" stop="1201"/>
                    <exon start="1464" stop="1709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSKSNKVPYVKALLNFLNQHSNLSNTVLWTPSTTRVAALYAAADAYVMNSQGLGETFGRVTIEAMAFGLPVLGTDAGGTKEIVEHNVTGLLHSLGRPGTQVLAQNLQYLLNNPSERQRLGSNGRKKVKDMYLKKHMYRRFGEVLYDCMRIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3056" PGL_stop="1987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3056" e_stop="1987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3056" e_stop="1987" e_length="1070"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3056" stop="2217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3055" stop="2424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3055" stop="2465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2489" stop="1987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGTTCCTTATAATAATTTCTCGTCACTTACTTCCGTCAGTAGAAACTGGAAGCTTCAGATTGAGCTTCCCGAGTTTTGGAGGCGAAGAAAAGCTACTGGTTCAACCCGTCAGGTGATTTTAATGGCGCAAGCTCGAATTGACCCGAGATTAAAACTCGGGTCATTTAAGTACTCTGCTTTTTCGTTTTACAAGCTTACGCTTTACGAACCGGAGTCGGGTAATTGGGCGGAATTACCACCGGTTCCTGGAATTTCCGATGGGCTGCCAATGTTTTGTCAGCTCGTCGGAGTGGGATTGAATCTGGTGGTGATGGGCGGGTGGAACCCTCTTTCTTGGGAACCTTCGAACGCCGTTTTTGTTTTTAGCTTTGTGTCCGCCACGTGGCGACGTGGAGCCGACATGCCTGGTTGCCGGAGATCATTTTTCGGTTGTGCGTCGGATTCTGAACGGACGGTGTACGTCGCCGGAGGTCACGACGAGGAGAAAAACGCACTCAAATCGGCGATGGCGTATGACGTGGCAAGGGATATGTGGGTCCCGGTGCCTGACATGACAAGTGAAAGAGATGAATGTAAATGCTCCTTTTTTGAAGGTAAATTCCACGTCATCGGTGGATATGACACGAGCATGCAAGGCCAGTTCGGTACGAGCGCTGAGTCATTCGATCCTTCCACGTGGCAGTGGGACCAAGTCAACGAACATTTCTTTGAATCTGCCACGTGTCCAAGAACCTGCGTTGAGGGTGGGGACGGCAAATTGTACTTGTGCCGGGACGGTGATGTGCTGGCACTCGGTAAGTCTACGTGGCAAGCTGTGGCGGCAATTCCGACGGAGCTCCGGAGCGTAGCTTTTGTGACAGCATGGAGGGGTAAAATTCTGATGACCGGTTCTATGGGATTTAATGAACCCCACAATACATATGTTCTTGATTTAAAGAGTTATAAATGGACCAAAATGGATACTCCGGTGTACTTTTCCGGCCACGTTCAATCCGGCTGCTGCCTGGAGATGTAAAAAGAGTTTGTTTTGATTGTACAGTTAGTTATAAATCAGAAAGATTTTAATTA</gDNA_template>
            <first_frame> R  V  P  Y  N  N  F  S  S  L  T  S  V  S  R  N  W  K  L  Q  I  E  L  P  E  F  W  R  R  R  K  A  T  G  S  T  R  Q  V  I  L  M  A  Q  A  R  I  D  P  R  L  K  L  G  S  F  K  Y  S  A  F  S  F  Y  K  L  T  L  Y  E  P  E  S  G  N  W  A  E  L  P  P  V  P  G  I  S  D  G  L  P  M  F  C  Q  L  V  G  V  G  L  N  L  V  V  M  G  G  W  N  P  L  S  W  E  P  S  N  A  V  F  V  F  S  F  V  S  A  T  W  R  R  G  A  D  M  P  G  C  R  R  S  F  F  G  C  A  S  D  S  E  R  T  V  Y  V  A  G  G  H  D  E  E  K  N  A  L  K  S  A  M  A  Y  D  V  A  R  D  M  W  V  P  V  P  D  M  T  S  E  R  D  E  C  K  C  S  F  F  E  G  K  F  H  V  I  G  G  Y  D  T  S  M  Q  G  Q  F  G  T  S  A  E  S  F  D  P  S  T  W  Q  W  D  Q  V  N  E  H  F  F  E  S  A  T  C  P  R  T  C  V  E  G  G  D  G  K  L  Y  L  C  R  D  G  D  V  L  A  L  G  K  S  T  W  Q  A  V  A  A  I  P  T  E  L  R  S  V  A  F  V  T  A  W  R  G  K  I  L  M  T  G  S  M  G  F  N  E  P  H  N  T  Y  V  L  D  L  K  S  Y  K  W  T  K  M  D  T  P  V  Y  F  S  G  H  V  Q  S  G  C  C  L  E  M  *  K  E  F  V  L  I  V  Q  L  V  I  N  Q  K  D  F  N   </first_frame>
            <second_frame>  E  F  L  I  I  I  S  R  H  L  L  P  S  V  E  T  G  S  F  R  L  S  F  P  S  F  G  G  E  E  K  L  L  V  Q  P  V  R  *  F  *  W  R  K  L  E  L  T  R  D  *  N  S  G  H  L  S  T  L  L  F  R  F  T  S  L  R  F  T  N  R  S  R  V  I  G  R  N  Y  H  R  F  L  E  F  P  M  G  C  Q  C  F  V  S  S  S  E  W  D  *  I  W  W  *  W  A  G  G  T  L  F  L  G  N  L  R  T  P  F  L  F  L  A  L  C  P  P  R  G  D  V  E  P  T  C  L  V  A  G  D  H  F  S  V  V  R  R  I  L  N  G  R  C  T  S  P  E  V  T  T  R  R  K  T  H  S  N  R  R  W  R  M  T  W  Q  G  I  C  G  S  R  C  L  T  *  Q  V  K  E  M  N  V  N  A  P  F  L  K  V  N  S  T  S  S  V  D  M  T  R  A  C  K  A  S  S  V  R  A  L  S  H  S  I  L  P  R  G  S  G  T  K  S  T  N  I  S  L  N  L  P  R  V  Q  E  P  A  L  R  V  G  T  A  N  C  T  C  A  G  T  V  M  C  W  H  S  V  S  L  R  G  K  L  W  R  Q  F  R  R  S  S  G  A  *  L  L  *  Q  H  G  G  V  K  F  *  *  P  V  L  W  D  L  M  N  P  T  I  H  M  F  L  I  *  R  V  I  N  G  P  K  W  I  L  R  C  T  F  P  A  T  F  N  P  A  A  A  W  R  C  K  K  S  L  F  *  L  Y  S  *  L  *  I  R  K  I  L  I  </second_frame>
            <third_frame>   S  S  L  *  *  F  L  V  T  Y  F  R  Q  *  K  L  E  A  S  D  *  A  S  R  V  L  E  A  K  K  S  Y  W  F  N  P  S  G  D  F  N  G  A  S  S  N  *  P  E  I  K  T  R  V  I  *  V  L  C  F  F  V  L  Q  A  Y  A  L  R  T  G  V  G  *  L  G  G  I  T  T  G  S  W  N  F  R  W  A  A  N  V  L  S  A  R  R  S  G  I  E  S  G  G  D  G  R  V  E  P  S  F  L  G  T  F  E  R  R  F  C  F  *  L  C  V  R  H  V  A  T  W  S  R  H  A  W  L  P  E  I  I  F  R  L  C  V  G  F  *  T  D  G  V  R  R  R  R  S  R  R  G  E  K  R  T  Q  I  G  D  G  V  *  R  G  K  G  Y  V  G  P  G  A  *  H  D  K  *  K  R  *  M  *  M  L  L  F  *  R  *  I  P  R  H  R  W  I  *  H  E  H  A  R  P  V  R  Y  E  R  *  V  I  R  S  F  H  V  A  V  G  P  S  Q  R  T  F  L  *  I  C  H  V  S  K  N  L  R  *  G  W  G  R  Q  I  V  L  V  P  G  R  *  C  A  G  T  R  *  V  Y  V  A  S  C  G  G  N  S  D  G  A  P  E  R  S  F  C  D  S  M  E  G  *  N  S  D  D  R  F  Y  G  I  *  *  T  P  Q  Y  I  C  S  *  F  K  E  L  *  M  D  Q  N  G  Y  S  G  V  L  F  R  P  R  S  I  R  L  L  P  G  D  V  K  R  V  C  F  D  C  T  V  S  Y  K  S  E  R  F  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3056" stop="2040"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPYNNFSSLTSVSRNWKLQIELPEFWRRRKATGSTRQVILMAQARIDPRLKLGSFKYSAFSFYKLTLYEPESGNWAELPPVPGISDGLPMFCQLVGVGLNLVVMGGWNPLSWEPSNAVFVFSFVSATWRRGADMPGCRRSFFGCASDSERTVYVAGGHDEEKNALKSAMAYDVARDMWVPVPDMTSERDECKCSFFEGKFHVIGGYDTSMQGQFGTSAESFDPSTWQWDQVNEHFFESATCPRTCVEGGDGKLYLCRDGDVLALGKSTWQAVAAIPTELRSVAFVTAWRGKILMTGSMGFNEPHNTYVLDLKSYKWTKMDTPVYFSGHVQSGCCLEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9912" PGL_stop="9048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9912" e_stop="9048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="9912" e_stop="9048" e_length="865"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9912" stop="9048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9835" stop="9103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9835" stop="9105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTACATATATATGTACACACACAGTAGCCCAATTTGTTAATTTCTTCCATCTTTTTCTTCATGGATCTTCTTCCGGGTCTTCCTAATGATATTGCTCTTGAATGTCTCATTCGTCTTCCTCTCCATCAATTCTCTAAAGCTGCTTCTGTATGCAAAAACTGGAAAAAAGAAATCAAGCATCCCCTCTTTCGACAACGACGGAAAGAATCGGGTCTTACCCGACCCGTTATCGTATTATCCCAAGCCATGGTTACTACTATTCGAGACCCTTATGGCATTACCAGCCTTTCATCTACTCAGTACTATAGACTCACCCTTTACGATCCGGAAAGGGGATTTTGGTACGATTTGCCGCCGATACCGGAGTTGATTGATGGATTGCCCATGTTTTGCCGGGTTGTAGGAGTCGGGTCGGATGTAATGGTGATAGGCGGGTGTGACCCGGTTAATTGGAGGGTTATGGACTCTGTTTTCATCTACAATTTCGTATCCGGTTCGTGGCGTCGTGGGGCGGATATGCCGGGAGGACAGAGGCTGTTTTTTGGATGTGCGTCGGATTCGGAGAGATTTGTGGTTGTCGCCGGCGGACATAACGACGAGAAGAATGCGCTGAGATCGGCTCTGTTGTATGACGTGGCGGAAGACGAGTGGGTTACTCTGCCGGAAATGGCCATGGAGCGTGACGAGTGCAAGTGCGCATTTTACCGCGGTGAATTCCACGTCATCGGAGGCTATCCTACGCCTGCACAAGGTCAATTCCAGCGCAGCGCTGAGGTGTTCAACTCCGCCACGTCAAGGGAGTGGCGCCTGGAGGAGGACTTCCTCGGTGCCGCCACGTGTCCCCAGACCTGCGTGGAAGGCGGC</gDNA_template>
            <first_frame> S  T  Y  I  C  T  H  T  V  A  Q  F  V  N  F  F  H  L  F  L  H  G  S  S  S  G  S  S  *  *  Y  C  S  *  M  S  H  S  S  S  S  P  S  I  L  *  S  C  F  C  M  Q  K  L  E  K  R  N  Q  A  S  P  L  S  T  T  T  E  R  I  G  S  Y  P  T  R  Y  R  I  I  P  S  H  G  Y  Y  Y  S  R  P  L  W  H  Y  Q  P  F  I  Y  S  V  L  *  T  H  P  L  R  S  G  K  G  I  L  V  R  F  A  A  D  T  G  V  D  *  W  I  A  H  V  L  P  G  C  R  S  R  V  G  C  N  G  D  R  R  V  *  P  G  *  L  E  G  Y  G  L  C  F  H  L  Q  F  R  I  R  F  V  A  S  W  G  G  Y  A  G  R  T  E  A  V  F  W  M  C  V  G  F  G  E  I  C  G  C  R  R  R  T  *  R  R  E  E  C  A  E  I  G  S  V  V  *  R  G  G  R  R  V  G  Y  S  A  G  N  G  H  G  A  *  R  V  Q  V  R  I  L  P  R  *  I  P  R  H  R  R  L  S  Y  A  C  T  R  S  I  P  A  Q  R  *  G  V  Q  L  R  H  V  K  G  V  A  P  G  G  G  L  P  R  C  R  H  V  S  P  D  L  R  G  R  R  </first_frame>
            <second_frame>  L  H  I  Y  V  H  T  Q  *  P  N  L  L  I  S  S  I  F  F  F  M  D  L  L  P  G  L  P  N  D  I  A  L  E  C  L  I  R  L  P  L  H  Q  F  S  K  A  A  S  V  C  K  N  W  K  K  E  I  K  H  P  L  F  R  Q  R  R  K  E  S  G  L  T  R  P  V  I  V  L  S  Q  A  M  V  T  T  I  R  D  P  Y  G  I  T  S  L  S  S  T  Q  Y  Y  R  L  T  L  Y  D  P  E  R  G  F  W  Y  D  L  P  P  I  P  E  L  I  D  G  L  P  M  F  C  R  V  V  G  V  G  S  D  V  M  V  I  G  G  C  D  P  V  N  W  R  V  M  D  S  V  F  I  Y  N  F  V  S  G  S  W  R  R  G  A  D  M  P  G  G  Q  R  L  F  F  G  C  A  S  D  S  E  R  F  V  V  V  A  G  G  H  N  D  E  K  N  A  L  R  S  A  L  L  Y  D  V  A  E  D  E  W  V  T  L  P  E  M  A  M  E  R  D  E  C  K  C  A  F  Y  R  G  E  F  H  V  I  G  G  Y  P  T  P  A  Q  G  Q  F  Q  R  S  A  E  V  F  N  S  A  T  S  R  E  W  R  L  E  E  D  F  L  G  A  A  T  C  P  Q  T  C  V  E  G  G </second_frame>
            <third_frame>   Y  I  Y  M  Y  T  H  S  S  P  I  C  *  F  L  P  S  F  S  S  W  I  F  F  R  V  F  L  M  I  L  L  L  N  V  S  F  V  F  L  S  I  N  S  L  K  L  L  L  Y  A  K  T  G  K  K  K  S  S  I  P  S  F  D  N  D  G  K  N  R  V  L  P  D  P  L  S  Y  Y  P  K  P  W  L  L  L  F  E  T  L  M  A  L  P  A  F  H  L  L  S  T  I  D  S  P  F  T  I  R  K  G  D  F  G  T  I  C  R  R  Y  R  S  *  L  M  D  C  P  C  F  A  G  L  *  E  S  G  R  M  *  W  *  *  A  G  V  T  R  L  I  G  G  L  W  T  L  F  S  S  T  I  S  Y  P  V  R  G  V  V  G  R  I  C  R  E  D  R  G  C  F  L  D  V  R  R  I  R  R  D  L  W  L  S  P  A  D  I  T  T  R  R  M  R  *  D  R  L  C  C  M  T  W  R  K  T  S  G  L  L  C  R  K  W  P  W  S  V  T  S  A  S  A  H  F  T  A  V  N  S  T  S  S  E  A  I  L  R  L  H  K  V  N  S  S  A  A  L  R  C  S  T  P  P  R  Q  G  S  G  A  W  R  R  T  S  S  V  P  P  R  V  P  R  P  A  W  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9884" stop="9048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLLISSIFFFMDLLPGLPNDIALECLIRLPLHQFSKAASVCKNWKKEIKHPLFRQRRKESGLTRPVIVLSQAMVTTIRDPYGITSLSSTQYYRLTLYDPERGFWYDLPPIPELIDGLPMFCRVVGVGSDVMVIGGCDPVNWRVMDSVFIYNFVSGSWRRGADMPGGQRLFFGCASDSERFVVVAGGHNDEKNALRSALLYDVAEDEWVTLPEMAMERDECKCAFYRGEFHVIGGYPTPAQGQFQRSAEVFNSATSREWRLEEDFLGAATCPQTCVEGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20100" PGL_stop="13328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17657" e_stop="17618"/>
            <exon e_start="17515" e_stop="17434"/>
            <exon e_start="16159" e_stop="16074"/>
            <exon e_start="15251" e_stop="15167"/>
            <exon e_start="15082" e_stop="14975"/>
            <exon e_start="13858" e_stop="13328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17657" e_stop="17618" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17617" i_stop="17516" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17515" e_stop="17434" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17433" i_stop="16160" i_length="1274"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16159" e_stop="16074" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16073" i_stop="15252" i_length="822"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15251" e_stop="15167" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.833" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15166" i_stop="15083" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15082" e_stop="14975" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.811" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14974" i_stop="13859" i_length="1116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13858" e_stop="13328" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17657" stop="17618"/>
              <exon start="17515" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17657" stop="17618"/>
              <exon start="17515" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17656" stop="17618"/>
              <exon start="17515" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17656" stop="17618"/>
              <exon start="17515" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17656" stop="17618"/>
              <exon start="17515" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17482" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17458" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17456" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17450" stop="17434"/>
              <exon start="16159" stop="16074"/>
              <exon start="15251" stop="15167"/>
              <exon start="15082" stop="14975"/>
              <exon start="13858" stop="13507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13784" stop="13439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTG : GTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTGAGGATTCTGTCAAAGACTTAAATAGTG : ATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGCCCTCAGCATCACAAGCAG : GCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAGTCTAGCAG : ATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTATTATATGGACGGGTTGATGAGG : GTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGATGACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAGTTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTAATTGAGGAAACTACAAGGCCAACCTGTAACAGCGAAGGGCTCTGTTTTGTTTCTGTGTTACTGACTTACTGTATCATATTTGTTAGTTGTTCATGTTTGTGCATTTTTGATATGGAAAAGTGGTCCTTTTGGCTCCAGACTCCAATGGCCAGAATAGTGCCGTCGGCAACAAATTATAAAAGTTTTTACTAAGTTTATCTAGT</gDNA_template>
            <first_frame> S  C  *  G  F  W  I  N  *  N  *  S  A   : G  *  Q  Y  A  T  R  N  S  A  F  C  R  T  R  S  L  L  *  G  F  C  Q  R  L  K  *  * :   S  I  E  L  S  G  S  *  S  S  F  *  R  R  E  T  *  I  S  G  D  E  P  S  A  S  Q  A   : G  K  R  *  A  T  E  S  K  G  T  C  C  W  K  A  *  K  K  T  S  F  F  *  A  K  S  S  R :   C  W  H  I  I  *  K  W  G  *  T  K  Q  T  N  E  D  K  A  F  G  I  L  E  R  R  K  I  I  I  W  T  G  *  *  G :   F  E  A  C  W  L  E  I  H  L  S  G  K  G  I  I  *  G  E  V  L  H  S  *  *  L  Q  R  P  S  *  F  G  S  S  L  L  I  F  *  Q  H  R  W  M  G  *  L  S  G  S  C  P  M  L  Q  F  Y  K  Q  M  *  R  N  V  P  E  V  G  L  *  H  C  E  P  *  I  I  I  F  N  L  L  S  A  V  G  P  Y  I  D  Y  P  K  S  K  *  L  H  S  A  S  D  T  F  V  D  L  L  I  E  E  T  T  R  P  T  C  N  S  E  G  L  C  F  V  S  V  L  L  T  Y  C  I  I  F  V  S  C  S  C  L  C  I  F  D  M  E  K  W  S  F  W  L  Q  T  P  M  A  R  I  V  P  S  A  T  N  Y  K  S  F  Y  *  V  Y  L   </first_frame>
            <second_frame>  A  V  E  D  F  G  S  T  E  I  D  P  L  :  V  D  N  M  L  P  E  T  A  P  S  A  E  Q  D  H  Y  F  E  D  S  V  K  D  L  N  S   : D  Q  L  N  S  V  G  V  E  V  P  S  R  D  V  R  P  K  F  P  E  M  S  P  Q  H  H  K  Q  :  A  K  D  K  Q  Q  K  A  K  E  L  A  V  G  R  R  E  R  K  H  L  S  S  R  P  S  L  A   : D  A  G  T  S  F  E  S  G  V  R  R  S  K  R  M  K  T  R  P  L  E  Y  W  K  G  E  R  L  L  Y  G  R  V  D  E   : G  L  K  L  V  G  L  K  Y  I  S  P  G  K  G  S  F  K  V  K  S  Y  I  P  D  D  Y  K  D  L  V  D  L  A  A  R  Y  *  F  S  N  S  I  D  G  W  V  S  F  L  D  L  V  P  C  F  S  F  I  N  K  C  S  V  M  Y  P  R  *  V  Y  N  I  V  S  L  E  L  L  S  L  I  C  *  A  L  L  V  H  I  L  I  I  P  R  A  N  D  F  T  V  L  Q  T  L  L  L  T  C  *  L  R  K  L  Q  G  Q  P  V  T  A  K  G  S  V  L  F  L  C  Y  *  L  T  V  S  Y  L  L  V  V  H  V  C  A  F  L  I  W  K  S  G  P  F  G  S  R  L  Q  W  P  E  *  C  R  R  Q  Q  I  I  K  V  F  T  K  F  I  *  </second_frame>
            <third_frame>   L  L  R  I  L  D  Q  L  K  L  I  R  W :   L  T  I  C  Y  Q  K  Q  R  L  L  Q  N  K  I  I  T  L  R  I  L  S  K  T  *  I  V  :  I  N  *  T  Q  W  E  L  K  F  L  L  E  T  *  D  L  N  F  R  R  *  A  L  S  I  T  S  R :   Q  K  I  S  N  R  K  Q  R  N  L  L  L  E  G  V  K  E  N  I  F  L  L  G  Q  V  *  Q  :  M  L  A  H  H  L  K  V  G  L  D  E  A  N  E  *  R  Q  G  L  W  N  I  G  K  A  K  D  Y  Y  M  D  G  L  M  R  :  V  *  S  L  L  A  *  N  T  S  L  R  E  R  D  H  L  R  *  S  L  T  F  L  M  T  T  K  T  *  L  I  W  Q  L  A  I  D  F  L  T  A  S  M  D  G  L  A  F  W  I  L  S  H  A  S  V  L  *  T  N  V  A  *  C  T  R  G  R  F  I  T  L  *  A  L  N  Y  Y  L  *  F  V  E  R  C  W  S  I  Y  *  L  S  Q  E  Q  M  T  S  Q  C  F  R  H  F  C  *  P  V  N  *  G  N  Y  K  A  N  L  *  Q  R  R  A  L  F  C  F  C  V  T  D  L  L  Y  H  I  C  *  L  F  M  F  V  H  F  *  Y  G  K  V  V  L  L  A  P  D  S  N  G  Q  N  S  A  V  G  N  K  L  *  K  F  L  L  S  L  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17656" stop="17618"/>
                    <exon start="17515" stop="17434"/>
                    <exon start="16159" stop="16074"/>
                    <exon start="15251" stop="15167"/>
                    <exon start="15082" stop="14975"/>
                    <exon start="13858" stop="13746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVEDFGSTEIDPLVDNMLPETAPSAEQDHYFEDSVKDLNSDQLNSVGVEVPSRDVRPKFPEMSPQHHKQAKDKQQKAKELAVGRRERKHLSSRPSLADAGTSFESGVRRSKRMKTRPLEYWKGERLLYGRVDEGLKLVGLKYISPGKGSFKVKSYIPDDYKDLVDLAARY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13566" stop="13339"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHSASDTFVDLLIEETTRPTCNSEGLCFVSVLLTYCIIFVSCSCLCIFDMEKWSFWLQTPMARIVPSATNYKSFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20100" e_stop="19810"/>
            <exon e_start="19543" e_stop="19341"/>
            <exon e_start="19262" e_stop="19174"/>
            <exon e_start="19045" e_stop="18943"/>
            <exon e_start="18836" e_stop="18667"/>
            <exon e_start="18552" e_stop="18131"/>
            <exon e_start="17518" e_stop="17505"/>
            <exon e_start="14437" e_stop="14430"/>
            <exon e_start="13680" e_stop="13531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.600" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.873" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.936"/>
          <exon-intron don_prob="0.000" acc_prob="0.552" e_score="0.786"/>
          <exon-intron don_prob="0.774" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="20100" e_stop="19810" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19809" i_stop="19544" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19543" e_stop="19341" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="19340" i_stop="19263" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19262" e_stop="19174" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19173" i_stop="19046" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19045" e_stop="18943" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.600">
            <gDNA_intron_boundary i_start="18942" i_stop="18837" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="18836" e_stop="18667" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.873">
            <gDNA_intron_boundary i_start="18666" i_stop="18553" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="0.936">
            <gDNA_exon_boundary e_start="18552" e_stop="18131" e_length="422"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18130" i_stop="17519" i_length="612"/>
          </intron>
          <exon e_serial="7" e_score="0.786">
            <gDNA_exon_boundary e_start="17518" e_stop="17505" e_length="14"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.552">
            <gDNA_intron_boundary i_start="17504" i_stop="14438" i_length="3067"/>
          </intron>
          <exon e_serial="8" e_score="0.500">
            <gDNA_exon_boundary e_start="14437" e_stop="14430" e_length="8"/>
          </exon>
          <intron i_serial="8" don_prob="0.774" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14429" i_stop="13681" i_length="749"/>
          </intron>
          <exon e_serial="9" e_score="0.893">
            <gDNA_exon_boundary e_start="13680" e_stop="13531" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20100" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18943"/>
              <exon start="18836" stop="18763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19996" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="19012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19992" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19992" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19991" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18943"/>
              <exon start="18836" stop="18667"/>
              <exon start="18552" stop="18131"/>
              <exon start="17518" stop="17505"/>
              <exon start="14437" stop="14430"/>
              <exon start="13680" stop="13531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19991" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18943"/>
              <exon start="18836" stop="18767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19990" stop="19810"/>
              <exon start="19543" stop="19341"/>
              <exon start="19262" stop="19174"/>
              <exon start="19045" stop="18943"/>
              <exon start="18836" stop="18740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18724" stop="18667"/>
              <exon start="18552" stop="18131"/>
              <exon start="17518" stop="17505"/>
              <exon start="14437" stop="14430"/>
              <exon start="13680" stop="13531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415061" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGTTCTCGTCCCTCTCTCCCGCTCAGTCCCAATTTTCAAAATTAAAATAAAGAAAAAATAAGGAAAATCATCCGCTTCACACATATGGTGTGCTCTTTCTAGTTCCTGAAACTTCCAACCCCTTATTGGAAGATGGTGAACGAAGCTCTTATCTCCGATCCGGTGGATCCTCTCCACAGCCTTGCCGGACTTTCTCTACTCCCAACAACAGTTAGGGTTTCCACCGGCGCCTCAGTATCAGTAGACTCCAAAGACCTAGAGTCAATTCACAATTTCATGAAGTCCATG : GAAACCAAGGGTCCTGGGCTCTTGGAGGAGGCTAGGGAAATTGTGGATAACGGTGCGGAGCTTTTGAATACCAAGTTTACAAGTTTCATACGATCTAAAGGCATTGATGGGGATCTTGCAATCAAGGGAAAGGAGAAGGTCCAGGAGAGAAGACCAGGACTTGGGCGTAAAAGGGCTCGATTTTCCCTCAAGCCTAGTACAAG : TCAACCTACTGTCAGCATAGCTCCTCGTTTAGATATTGATCAACTATCAGATCCAGTGGAATTTTTCTCAGTTGCTGAAAAGCTAGAAG : TTGCTGAGAAGGAAATAGAAAGACAGAAAGGTGGCAGTATCCATGATCCAGATGTGAATAATCCCCCAGCCAATGCTCGGCGTCGTCGACCAGGCATCTTGGG : CAAATCGGTGAAGTATAAGCACCGTTTCTCATCCTCCCAGCCTGAGAATGATGATGCATTTATATCATCTCAAGAGACATTGGAGGATGATATTCTGGTGGAACATGGTTCTCAGTTGCCAGAAGAGCTCCATGGCCTCAATGTTGAACTACAAGAAGCAGAACTCACAG : GGCCAATAAAGAAATCAGAAAACAGAATCAACAAGATACTGGATGAATTACTGTCTGGTAGTGGTGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCAGTTGAAGATCAAGCCCATTGAACTAGGAACTTTATGTATTCCTGAGTTCCCTGTGACTGGAAAGTTTGATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTG : CAGGTTGACAATAT : GAAATTAG : CAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTTGTTGAGCGCTGTTGGTCCATATATTGATTATCCCAAGAGCAAATGACTTCACAGTGCTTCAGACACTTTTGTTGACCTGTTA</gDNA_template>
            <first_frame> I  R  S  R  P  S  L  P  L  S  P  N  F  Q  N  *  N  K  E  K  I  R  K  I  I  R  F  T  H  M  V  C  S  F  *  F  L  K  L  P  T  P  Y  W  K  M  V  N  E  A  L  I  S  D  P  V  D  P  L  H  S  L  A  G  L  S  L  L  P  T  T  V  R  V  S  T  G  A  S  V  S  V  D  S  K  D  L  E  S  I  H  N  F  M  K  S  M  :  E  T  K  G  P  G  L  L  E  E  A  R  E  I  V  D  N  G  A  E  L  L  N  T  K  F  T  S  F  I  R  S  K  G  I  D  G  D  L  A  I  K  G  K  E  K  V  Q  E  R  R  P  G  L  G  R  K  R  A  R  F  S  L  K  P  S  T  S :   Q  P  T  V  S  I  A  P  R  L  D  I  D  Q  L  S  D  P  V  E  F  F  S  V  A  E  K  L  E   : V  A  E  K  E  I  E  R  Q  K  G  G  S  I  H  D  P  D  V  N  N  P  P  A  N  A  R  R  R  R  P  G  I  L  G :   K  S  V  K  Y  K  H  R  F  S  S  S  Q  P  E  N  D  D  A  F  I  S  S  Q  E  T  L  E  D  D  I  L  V  E  H  G  S  Q  L  P  E  E  L  H  G  L  N  V  E  L  Q  E  A  E  L  T   : G  P  I  K  K  S  E  N  R  I  N  K  I  L  D  E  L  L  S  G  S  G  E  D  L  D  R  D  M  A  V  S  K  L  Q  E  Q  L  K  I  K  P  I  E  L  G  T  L  C  I  P  E  F  P  V  T  G  K  F  D  G  K  A  L  G  E  R  I  Q  K  P  S  K  F  F  L  E  I  A  E  L  V  K  S  A  T  E  G  T  P  S  S  H  K  Q  H  E  E  S  P  A  S  K  L  A  S  P  T  P  P  K  S  P  F  G  S  L  S  L  L  K  K  K  L  M  Q  S  N  P  L  R  D  P  F  S  P  L  N  I  D  L  :  Q  V  D  N  M :   K  L   : A  N  V  A  *  C  T  R  G  R  F  I  T  L  *  A  L  N  Y  Y  L  *  F  V  E  R  C  W  S  I  Y  *  L  S  Q  E  Q  M  T  S  Q  C  F  R  H  F  C  *  P  V  </first_frame>
            <second_frame>  F  V  L  V  P  L  S  R  S  V  P  I  F  K  I  K  I  K  K  K  *  G  K  S  S  A  S  H  I  W  C  A  L  S  S  S  *  N  F  Q  P  L  I  G  R  W  *  T  K  L  L  S  P  I  R  W  I  L  S  T  A  L  P  D  F  L  Y  S  Q  Q  Q  L  G  F  P  P  A  P  Q  Y  Q  *  T  P  K  T  *  S  Q  F  T  I  S  *  S  P  W :   K  P  R  V  L  G  S  W  R  R  L  G  K  L  W  I  T  V  R  S  F  *  I  P  S  L  Q  V  S  Y  D  L  K  A  L  M  G  I  L  Q  S  R  E  R  R  R  S  R  R  E  D  Q  D  L  G  V  K  G  L  D  F  P  S  S  L  V  Q   : V  N  L  L  S  A  *  L  L  V  *  I  L  I  N  Y  Q  I  Q  W  N  F  S  Q  L  L  K  S  *  K  :  L  L  R  R  K  *  K  D  R  K  V  A  V  S  M  I  Q  M  *  I  I  P  Q  P  M  L  G  V  V  D  Q  A  S  W   : A  N  R  *  S  I  S  T  V  S  H  P  P  S  L  R  M  M  M  H  L  Y  H  L  K  R  H  W  R  M  I  F  W  W  N  M  V  L  S  C  Q  K  S  S  M  A  S  M  L  N  Y  K  K  Q  N  S  Q  :  G  Q  *  R  N  Q  K  T  E  S  T  R  Y  W  M  N  Y  C  L  V  V  V  K  I  *  T  G  T  W  Q  Y  P  N  C  K  S  S  *  R  S  S  P  L  N  *  E  L  Y  V  F  L  S  S  L  *  L  E  S  L  M  V  R  L  L  E  R  E  F  R  S  L  V  S  F  F  W  R  *  R  S  W  L  K  V  Q  L  R  E  R  H  P  L  T  N  S  M  K  K  V  L  P  V  N  *  H  H  P  L  H  Q  K  V  H  L  V  H  C  L  C  *  K  R  N  L  C  S  Q  I  H  *  E  I  L  F  R  L  S  T  L  I  C :   R  L  T  I   : *  N  *  :  Q  M  *  R  N  V  P  E  V  G  L  *  H  C  E  P  *  I  I  I  F  N  L  L  S  A  V  G  P  Y  I  D  Y  P  K  S  K  *  L  H  S  A  S  D  T  F  V  D  L  L </second_frame>
            <third_frame>   S  F  S  S  L  S  P  A  Q  S  Q  F  S  K  L  K  *  R  K  N  K  E  N  H  P  L  H  T  Y  G  V  L  F  L  V  P  E  T  S  N  P  L  L  E  D  G  E  R  S  S  Y  L  R  S  G  G  S  S  P  Q  P  C  R  T  F  S  T  P  N  N  S  *  G  F  H  R  R  L  S  I  S  R  L  Q  R  P  R  V  N  S  Q  F  H  E  V  H   : G  N  Q  G  S  W  A  L  G  G  G  *  G  N  C  G  *  R  C  G  A  F  E  Y  Q  V  Y  K  F  H  T  I  *  R  H  *  W  G  S  C  N  Q  G  K  G  E  G  P  G  E  K  T  R  T  W  A  *  K  G  S  I  F  P  Q  A  *  Y  K  :  S  T  Y  C  Q  H  S  S  S  F  R  Y  *  S  T  I  R  S  S  G  I  F  L  S  C  *  K  A  R  S :   C  *  E  G  N  R  K  T  E  R  W  Q  Y  P  *  S  R  C  E  *  S  P  S  Q  C  S  A  S  S  T  R  H  L  G  :  Q  I  G  E  V  *  A  P  F  L  I  L  P  A  *  E  *  *  C  I  Y  I  I  S  R  D  I  G  G  *  Y  S  G  G  T  W  F  S  V  A  R  R  A  P  W  P  Q  C  *  T  T  R  S  R  T  H  R :   A  N  K  E  I  R  K  Q  N  Q  Q  D  T  G  *  I  T  V  W  *  W  *  R  S  R  P  G  H  G  S  I  Q  I  A  R  A  V  E  D  Q  A  H  *  T  R  N  F  M  Y  S  *  V  P  C  D  W  K  V  *  W  *  G  S  W  R  E  N  S  E  A  *  *  V  F  F  G  D  S  G  V  G  *  K  C  N  *  G  N  A  I  L  S  Q  T  A  *  R  K  S  C  Q  *  I  S  I  T  H  S  T  K  K  S  I  W  F  I  V  F  V  E  K  E  T  Y  A  V  K  S  T  E  R  S  F  F  A  S  Q  H  *  S   : A  G  *  Q  Y  :  E  I  S :   K  C  S  V  M  Y  P  R  *  V  Y  N  I  V  S  L  E  L  L  S  L  I  C  *  A  L  L  V  H  I  L  I  I  P  R  A  N  D  F  T  V  L  Q  T  L  L  L  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19995" stop="19810"/>
                    <exon start="19543" stop="19341"/>
                    <exon start="19262" stop="19174"/>
                    <exon start="19045" stop="18943"/>
                    <exon start="18836" stop="18667"/>
                    <exon start="18552" stop="18131"/>
                    <exon start="17518" stop="17505"/>
                    <exon start="14437" stop="14430"/>
                    <exon start="13680" stop="13667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKLPTPYWKMVNEALISDPVDPLHSLAGLSLLPTTVRVSTGASVSVDSKDLESIHNFMKSMETKGPGLLEEAREIVDNGAELLNTKFTSFIRSKGIDGDLAIKGKEKVQERRPGLGRKRARFSLKPSTSQPTVSIAPRLDIDQLSDPVEFFSVAEKLEVAEKEIERQKGGSIHDPDVNNPPANARRRRPGILGKSVKYKHRFSSSQPENDDAFISSQETLEDDILVEHGSQLPEELHGLNVELQEAELTGPIKKSENRINKILDELLSGSGEDLDRDMAVSKLQEQLKIKPIELGTLCIPEFPVTGKFDGKALGERIQKPSKFFLEIAELVKSATEGTPSSHKQHEESPASKLASPTPPKSPFGSLSLLKKKLMQSNPLRDPFSPLNIDLQVDNMKLANVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18549" e_stop="17954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="18549" e_stop="17954" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18549" stop="18055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18376" stop="17954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18320" stop="17983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAAAGAAATCAGAAAACAGAATCAACAAGATACTGGATGAATTACTGTCTGGTAGTGGTGAAGATCTAGACCGGGACATGGCAGTATCCAAATTGCAAGAGCAGTTGAAGATCAAGCCCATTGAACTAGGAACTTTATGTATTCCTGAGTTCCCTGTGACTGGAAAGTTTGATGGTAAGGCTCTTGGAGAGAGAATTCAGAAGCCTAGTAAGTTTTTTTTGGAGATAGCGGAGTTGGTTAAAAGTGCAACTGAGGGAACGCCATCCTCTCACAAACAGCATGAAGAAAGTCCTGCCAGTAAATTAGCATCACCCACTCCACCAAAAAGTCCATTTGGTTCATTGTCTTTGTTGAAAAAGAAACTTATGCAGTCAAATCCACTGAGAGATCCTTTTTCGCCTCTCAACATTGATCTGCAATCAGAGCATCCAGATTGGTCCGCGAAGAAGAAATCACAATGTGTAAATAATAATGTTGGACCTATTGAATCTCGTGGTTGTGAAAATACAAATATTATGGTCCCTTTAAGAGGTTCAGACTTAGTGCATGAGCAACCAATTGAAAAGAATCCAGGCAGAGATAGTGTAAAAACT</gDNA_template>
            <first_frame> Q  *  R  N  Q  K  T  E  S  T  R  Y  W  M  N  Y  C  L  V  V  V  K  I  *  T  G  T  W  Q  Y  P  N  C  K  S  S  *  R  S  S  P  L  N  *  E  L  Y  V  F  L  S  S  L  *  L  E  S  L  M  V  R  L  L  E  R  E  F  R  S  L  V  S  F  F  W  R  *  R  S  W  L  K  V  Q  L  R  E  R  H  P  L  T  N  S  M  K  K  V  L  P  V  N  *  H  H  P  L  H  Q  K  V  H  L  V  H  C  L  C  *  K  R  N  L  C  S  Q  I  H  *  E  I  L  F  R  L  S  T  L  I  C  N  Q  S  I  Q  I  G  P  R  R  R  N  H  N  V  *  I  I  M  L  D  L  L  N  L  V  V  V  K  I  Q  I  L  W  S  L  *  E  V  Q  T  *  C  M  S  N  Q  L  K  R  I  Q  A  E  I  V  *  K   </first_frame>
            <second_frame>  N  K  E  I  R  K  Q  N  Q  Q  D  T  G  *  I  T  V  W  *  W  *  R  S  R  P  G  H  G  S  I  Q  I  A  R  A  V  E  D  Q  A  H  *  T  R  N  F  M  Y  S  *  V  P  C  D  W  K  V  *  W  *  G  S  W  R  E  N  S  E  A  *  *  V  F  F  G  D  S  G  V  G  *  K  C  N  *  G  N  A  I  L  S  Q  T  A  *  R  K  S  C  Q  *  I  S  I  T  H  S  T  K  K  S  I  W  F  I  V  F  V  E  K  E  T  Y  A  V  K  S  T  E  R  S  F  F  A  S  Q  H  *  S  A  I  R  A  S  R  L  V  R  E  E  E  I  T  M  C  K  *  *  C  W  T  Y  *  I  S  W  L  *  K  Y  K  Y  Y  G  P  F  K  R  F  R  L  S  A  *  A  T  N  *  K  E  S  R  Q  R  *  C  K  N  </second_frame>
            <third_frame>   I  K  K  S  E  N  R  I  N  K  I  L  D  E  L  L  S  G  S  G  E  D  L  D  R  D  M  A  V  S  K  L  Q  E  Q  L  K  I  K  P  I  E  L  G  T  L  C  I  P  E  F  P  V  T  G  K  F  D  G  K  A  L  G  E  R  I  Q  K  P  S  K  F  F  L  E  I  A  E  L  V  K  S  A  T  E  G  T  P  S  S  H  K  Q  H  E  E  S  P  A  S  K  L  A  S  P  T  P  P  K  S  P  F  G  S  L  S  L  L  K  K  K  L  M  Q  S  N  P  L  R  D  P  F  S  P  L  N  I  D  L  Q  S  E  H  P  D  W  S  A  K  K  K  S  Q  C  V  N  N  N  V  G  P  I  E  S  R  G  C  E  N  T  N  I  M  V  P  L  R  G  S  D  L  V  H  E  Q  P  I  E  K  N  P  G  R  D  S  V  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18547" stop="17954"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKSENRINKILDELLSGSGEDLDRDMAVSKLQEQLKIKPIELGTLCIPEFPVTGKFDGKALGERIQKPSKFFLEIAELVKSATEGTPSSHKQHEESPASKLASPTPPKSPFGSLSLLKKKLMQSNPLRDPFSPLNIDLQSEHPDWSAKKKSQCVNNNVGPIESRGCENTNIMVPLRGSDLVHEQPIEKNPGRDSVKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25273" PGL_stop="31116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25273" e_stop="25464"/>
            <exon e_start="26362" e_stop="26440"/>
            <exon e_start="28097" e_stop="28179"/>
            <exon e_start="28329" e_stop="28478"/>
            <exon e_start="29121" e_stop="29236"/>
            <exon e_start="30218" e_stop="30323"/>
            <exon e_start="31073" e_stop="31116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.891"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="25273" e_stop="25464" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25465" i_stop="26361" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26362" e_stop="26440" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26441" i_stop="28096" i_length="1656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28179" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="28180" i_stop="28328" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28329" e_stop="28478" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28479" i_stop="29120" i_length="642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29121" e_stop="29236" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.622" acc_prob="0.956">
            <gDNA_intron_boundary i_start="29237" i_stop="30217" i_length="981"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30218" e_stop="30323" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="30324" i_stop="31072" i_length="749"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31073" e_stop="31116" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25294" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25317" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28478"/>
              <exon start="29121" stop="29236"/>
              <exon start="30218" stop="30323"/>
              <exon start="31073" stop="31115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25317" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281288" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28478"/>
              <exon start="29121" stop="29236"/>
              <exon start="30218" stop="30323"/>
              <exon start="31073" stop="31116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28478"/>
              <exon start="29121" stop="29236"/>
              <exon start="30218" stop="30323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25422" stop="25464"/>
              <exon start="26362" stop="26440"/>
              <exon start="28097" stop="28179"/>
              <exon start="28329" stop="28478"/>
              <exon start="29121" stop="29236"/>
              <exon start="30218" stop="30323"/>
              <exon start="31073" stop="31103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATAAAAGCCAGTAATCCTATGGTATACTATTTCTTCTGTATCGCAGCCCTTAAATAGAAAGCCCTCAATTTTTTCACTTCCAATCTATCAATATTTCACTCGATTCACTCTATATCTCAACAATCTCCGCTCTGCAACAATGGGGGCTTCACTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATCGTT : AAATCTTACGAGACTAAGCAGTACAAGAAAGGACTAAAAGCTGCTGATACAATTCTCAAGAAATTTCCTAATCATGGAG : AAACATTGTCAATGAAAGGATTAACATTGAATTGTATGGACCGGAAGTCAGAAGCATATGAACTTGTCCGGCTTGGATTGAAG : AATGACCTTAAGAGCCATGTTTGTTGGCATGTTTATGGTCTCCTATACCGGTCTGATAGAGAGTACCGAGAAGCAATTAAATGCTATCGAAATGCCCTCAGGATTGATCCTGACAATATTGAGATATTACGAGACCTATCCCTTCTACAG : GCACAAATGCGCGACTTGGAAGGTTTTGTTGAAACAAGACAGCAATTGCTCACTCTAAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTGCTCATCATTTAAACTCAAA : TGGATCAAAAGCTGTTGATATCCTTGAGGCATATGAAGGGACTCTTGATGACGATTACCCTCCAGAGAATGAACGTTGTGAACATGGGGAGATGCTCCTGTACAAG : ATCTCTTTATTAGAGGAATGTGGATTTCCTGAGAGGGCTCTTGA</gDNA_template>
            <first_frame> R  *  K  P  V  I  L  W  Y  T  I  S  S  V  S  Q  P  L  N  R  K  P  S  I  F  S  L  P  I  Y  Q  Y  F  T  R  F  T  L  Y  L  N  N  L  R  S  A  T  M  G  A  S  L  P  P  K  E  A  N  L  F  K  L  I  V  :  K  S  Y  E  T  K  Q  Y  K  K  G  L  K  A  A  D  T  I  L  K  K  F  P  N  H  G   : E  T  L  S  M  K  G  L  T  L  N  C  M  D  R  K  S  E  A  Y  E  L  V  R  L  G  L  K  :  N  D  L  K  S  H  V  C  W  H  V  Y  G  L  L  Y  R  S  D  R  E  Y  R  E  A  I  K  C  Y  R  N  A  L  R  I  D  P  D  N  I  E  I  L  R  D  L  S  L  L  Q  :  A  Q  M  R  D  L  E  G  F  V  E  T  R  Q  Q  L  L  T  L  K  P  N  H  R  M  N  W  I  G  F  A  V  A  H  H  L  N  S  N :   G  S  K  A  V  D  I  L  E  A  Y  E  G  T  L  D  D  D  Y  P  P  E  N  E  R  C  E  H  G  E  M  L  L  Y  K  :  I  S  L  L  E  E  C  G  F  P  E  R  A  L   </first_frame>
            <second_frame>  D  K  S  Q  *  S  Y  G  I  L  F  L  L  Y  R  S  P  *  I  E  S  P  Q  F  F  H  F  Q  S  I  N  I  S  L  D  S  L  Y  I  S  T  I  S  A  L  Q  Q  W  G  L  H  F  L  L  K  R  P  T  S  S  N  S  S  L :   N  L  T  R  L  S  S  T  R  K  D  *  K  L  L  I  Q  F  S  R  N  F  L  I  M  E  :  K  H  C  Q  *  K  D  *  H  *  I  V  W  T  G  S  Q  K  H  M  N  L  S  G  L  D  *  R :   M  T  L  R  A  M  F  V  G  M  F  M  V  S  Y  T  G  L  I  E  S  T  E  K  Q  L  N  A  I  E  M  P  S  G  L  I  L  T  I  L  R  Y  Y  E  T  Y  P  F  Y  R :   H  K  C  A  T  W  K  V  L  L  K  Q  D  S  N  C  S  L  *  N  Q  I  I  A  *  T  G  L  A  L  Q  L  L  I  I  *  T  Q   : M  D  Q  K  L  L  I  S  L  R  H  M  K  G  L  L  M  T  I  T  L  Q  R  M  N  V  V  N  M  G  R  C  S  C  T  R :   S  L  Y  *  R  N  V  D  F  L  R  G  L  L  </second_frame>
            <third_frame>   I  K  A  S  N  P  M  V  Y  Y  F  F  C  I  A  A  L  K  *  K  A  L  N  F  F  T  S  N  L  S  I  F  H  S  I  H  S  I  S  Q  Q  S  P  L  C  N  N  G  G  F  T  S  S  *  R  G  Q  P  L  Q  T  H  R   : *  I  L  R  D  *  A  V  Q  E  R  T  K  S  C  *  Y  N  S  Q  E  I  S  *  S  W  R :   N  I  V  N  E  R  I  N  I  E  L  Y  G  P  E  V  R  S  I  *  T  C  P  A  W  I  E   : E  *  P  *  E  P  C  L  L  A  C  L  W  S  P  I  P  V  *  *  R  V  P  R  S  N  *  M  L  S  K  C  P  Q  D  *  S  *  Q  Y  *  D  I  T  R  P  I  P  S  T   : G  T  N  A  R  L  G  R  F  C  *  N  K  T  A  I  A  H  S  K  T  K  S  S  H  E  L  D  W  L  C  S  C  S  S  F  K  L  K  :  W  I  K  S  C  *  Y  P  *  G  I  *  R  D  S  *  *  R  L  P  S  R  E  *  T  L  *  T  W  G  D  A  P  V  Q   : D  L  F  I  R  G  M  W  I  S  *  E  G  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25279" stop="25464"/>
                    <exon start="26362" stop="26440"/>
                    <exon start="28097" stop="28179"/>
                    <exon start="28329" stop="28478"/>
                    <exon start="29121" stop="29236"/>
                    <exon start="30218" stop="30323"/>
                    <exon start="31073" stop="31114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPVILWYTISSVSQPLNRKPSIFSLPIYQYFTRFTLYLNNLRSATMGASLPPKEANLFKLIVKSYETKQYKKGLKAADTILKKFPNHGETLSMKGLTLNCMDRKSEAYELVRLGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLEGFVETRQQLLTLKPNHRMNWIGFAVAHHLNSNGSKAVDILEAYEGTLDDDYPPENERCEHGEMLLYKISLLEECGFPERAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32554" PGL_stop="42712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32554" e_stop="32688"/>
            <exon e_start="34637" e_stop="34714"/>
            <exon e_start="34793" e_stop="34846"/>
            <exon e_start="34955" e_stop="35025"/>
            <exon e_start="35944" e_stop="35998"/>
            <exon e_start="36084" e_stop="36179"/>
            <exon e_start="38065" e_stop="38193"/>
            <exon e_start="38314" e_stop="38396"/>
            <exon e_start="38489" e_stop="38719"/>
            <exon e_start="38954" e_stop="39086"/>
            <exon e_start="39166" e_stop="39273"/>
            <exon e_start="39915" e_stop="40046"/>
            <exon e_start="40773" e_stop="40829"/>
            <exon e_start="40950" e_stop="41047"/>
            <exon e_start="41251" e_stop="41309"/>
            <exon e_start="41410" e_stop="41521"/>
            <exon e_start="41637" e_stop="41737"/>
            <exon e_start="42055" e_stop="42712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.987"/>
          <exon-intron don_prob="0.925" acc_prob="0.998" e_score="0.963"/>
          <exon-intron don_prob="0.988" acc_prob="0.783" e_score="0.972"/>
          <exon-intron don_prob="0.972" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="0.992"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.735" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32554" e_stop="32688" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32689" i_stop="34636" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="34637" e_stop="34714" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="34715" i_stop="34792" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="34793" e_stop="34846" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34847" i_stop="34954" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="34955" e_stop="35025" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.783">
            <gDNA_intron_boundary i_start="35026" i_stop="35943" i_length="918"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35944" e_stop="35998" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35999" i_stop="36083" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36084" e_stop="36179" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36180" i_stop="38064" i_length="1885"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="38065" e_stop="38193" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="38194" i_stop="38313" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38314" e_stop="38396" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38489" e_stop="38719" e_length="231"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="38954" e_stop="39086" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="39166" e_stop="39273" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="39915" e_stop="40046" e_length="132"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="40773" e_stop="40829" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.972" acc_prob="0.917">
            <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="40950" e_stop="41047" e_length="98"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="41251" e_stop="41309" e_length="59"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="41410" e_stop="41521" e_length="112"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="41637" e_stop="41737" e_length="101"/>
          </exon>
          <intron i_serial="17" don_prob="0.983" acc_prob="0.735">
            <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317"/>
          </intron>
          <exon e_serial="18" e_score="0.955">
            <gDNA_exon_boundary e_start="42055" e_stop="42712" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32554" stop="32688"/>
              <exon start="34637" stop="34714"/>
              <exon start="34793" stop="34846"/>
              <exon start="34955" stop="35025"/>
              <exon start="35944" stop="35998"/>
              <exon start="36084" stop="36179"/>
              <exon start="38065" stop="38180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32620" stop="32688"/>
              <exon start="34637" stop="34714"/>
              <exon start="34793" stop="34846"/>
              <exon start="34955" stop="35025"/>
              <exon start="35944" stop="35998"/>
              <exon start="36084" stop="36179"/>
              <exon start="38065" stop="38193"/>
              <exon start="38314" stop="38329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34796" stop="34846"/>
              <exon start="34955" stop="35025"/>
              <exon start="35944" stop="35998"/>
              <exon start="36084" stop="36179"/>
              <exon start="38065" stop="38193"/>
              <exon start="38314" stop="38396"/>
              <exon start="38489" stop="38693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35969" stop="35998"/>
              <exon start="36084" stop="36179"/>
              <exon start="38065" stop="38193"/>
              <exon start="38314" stop="38396"/>
              <exon start="38489" stop="38521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38065" stop="38193"/>
              <exon start="38314" stop="38396"/>
              <exon start="38489" stop="38719"/>
              <exon start="38954" stop="39080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38132" stop="38193"/>
              <exon start="38314" stop="38396"/>
              <exon start="38489" stop="38497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38505" stop="38719"/>
              <exon start="38954" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="39957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38662" stop="38719"/>
              <exon start="38954" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38998" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="40016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39222" stop="39273"/>
              <exon start="39915" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40019" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40810" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40816" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41271" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41441" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590557" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41667" stop="41737"/>
              <exon start="42055" stop="42458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42228" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42260" stop="42710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42285" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATACTATGATGGTTTACAAAGATGTTTGGGATTGTATTCTGAAAAGGGGCAATATACCGCTGATGAAATTGATAGACTAGAAAATTTGTACAGAGTACTTGCCCATCAGTATAGTAGATCATCTGCTGTAAAG : AGGATTCCACTTGATTTTCTCCAAGATGACAAGTTTCGAGAAGCTGCAGATAATTATATTCGACCTCTTCTGACAAAA : GGGGTTCCTTCTTTGTTTTCTGATCTTTATCCGTTATATGATCATCCTGGCAAG : GCTGATATTCTAGGGGAAATAGTTTTGAAGCTTGAACAATCACTTAAGAGTACTGGTGGATACCCTGGGAG : AGTGGAGAAGGAACCCCCTTCAACACTTATGTGGACTTTATTTTATTTGGCTCAG : CACTATGATAGACGTGAACAGTATGACATTGCTCTGACTAAAATTGACGAGGCAATCGAGCACACTCCAACTGTAATAGATTTATACTCTGTCAAG : AGCCGCATACTAAAGCATGCTGGTGACTTGGCAGCAGCTGCTGCACTTGCTGATGAGGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGCGAATGTGTTAAGCGCATGCTTCCGGCAGATCAG : GTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG : GTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAG : ATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAA : GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG : ACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAG : GCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTG : ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG : CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG : AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT : GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA : GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGATAA</gDNA_template>
            <first_frame> R  Y  Y  D  G  L  Q  R  C  L  G  L  Y  S  E  K  G  Q  Y  T  A  D  E  I  D  R  L  E  N  L  Y  R  V  L  A  H  Q  Y  S  R  S  S  A  V  K  :  R  I  P  L  D  F  L  Q  D  D  K  F  R  E  A  A  D  N  Y  I  R  P  L  L  T  K  :  G  V  P  S  L  F  S  D  L  Y  P  L  Y  D  H  P  G  K  :  A  D  I  L  G  E  I  V  L  K  L  E  Q  S  L  K  S  T  G  G  Y  P  G  R :   V  E  K  E  P  P  S  T  L  M  W  T  L  F  Y  L  A  Q  :  H  Y  D  R  R  E  Q  Y  D  I  A  L  T  K  I  D  E  A  I  E  H  T  P  T  V  I  D  L  Y  S  V  K  :  S  R  I  L  K  H  A  G  D  L  A  A  A  A  A  L  A  D  E  A  R  C  M  D  L  A  D  R  Y  V  N  S  E  C  V  K  R  M  L  P  A  D  Q  :  V  T  L  A  E  K  T  A  V  L  F  T  K  D  G  E  Q  H  N  N  L  Y  D  M  Q  C  M  W :   Y  E  L  A  S  G  E  S  Y  L  R  Q  G  E  L  G  R  S  L  K  K  F  L  A  V  E  K  H  Y  A  D  I  T  E  D  Q  F  D  F  H  S  Y  C  L  R  K  M  T  L  R  A  Y  V  E  M  L  K  F  Q  D  R  L  H  S  H  A  Y  F  R  K  A  A  S  G  A  I  R :   C  Y  L  K  L  Y  D  S  P  L  K  S  A  S  E  E  D  D  A  M  S  K  L  P  P  S  Q  K  K  K  L  K  Q  K  L  R  K  A  E  A  R  A  K  K  :  D  A  E  V  K  I  E  E  S  N  A  T  S  A  T  K  S  G  K  R  H  V  K  P  V  D  P  D  P  H  G  E  K  L  I  Q  :  T  E  D  P  L  A  E  A  S  K  Y  L  K  L  L  L  K  H  S  P  D  F  L  E  T  H  L  L  S  F  D  V  N  M  R  K  Q  K  I  L  L  A  L  Q  :  A  I  K  H  L  M  R  L  D  A  D  D  P  K  S  H  L  C  L  :  M  K  F  F  H  K  V  D  S  L  P  T  L  V  T  D  S  E  K  L  I  W  G  V  L  E  A  E  R  P  A  F  S :   Q  L  H  G  K  S  L  I  E  A  N  N  T  F  L  E  K  H  K   : E  S  L  M  H  R  A  A  V  A  E  L  L  H  V  L  E  P  N  K  K  A  E  A  V  K  L  I  E  D  S  V  N  D  L  V  S  M :   D  G  G  K  G  T  V  R  S  W  K  L  N  D  C  M  T  V  H  K  L  L  E  T  T  L  V  D  H  D  A  A  S   : R  W  K  V  R  C  A  E  Y  F  V  H  S  T  Y  F  G  G  I  Q  S  S  A  N  N  Q  V  Q  K  S  P  A  N  G  A  V  G  L  N  A  G  E  N  S  S  L  S  S  N  G  R  L  E  K  L  N  A  L  K  D  L  Q  I  *  L  Y  T  S  S  *  S  V  I  S  L  E  E  C  W  R  S  Q  V  E  L  Y  Q  A  S  R  V  Y  T  *  Q  H  *  D  G  S  K  G  N  F  Q  L  F  E  G  S  C  C  F  W  T  G  S  P  P  L  I  *  S  D  Y  H  *  H  E  D  S  S  T  L  L  S  C  Q  G  S  G  Q  I  Q  G  R  V  C  G  L  A  *  S  I  F  N  N  F  Q  I  *  S  L  S  S  W  K  S  V  *  V  V  G  S  F  I  P  T  A  *  K  K  D  D  L  K  C  M  L  Y  F  F  H  L  V  L  H  F  S  L  C  T  N  A  V  L  C  E  R  N  F  A  I  V  F  R  E  N  D   </first_frame>
            <second_frame>  D  T  M  M  V  Y  K  D  V  W  D  C  I  L  K  R  G  N  I  P  L  M  K  L  I  D  *  K  I  C  T  E  Y  L  P  I  S  I  V  D  H  L  L  *  R :   G  F  H  L  I  F  S  K  M  T  S  F  E  K  L  Q  I  I  I  F  D  L  F  *  Q  K :   G  F  L  L  C  F  L  I  F  I  R  Y  M  I  I  L  A  R :   L  I  F  *  G  K  *  F  *  S  L  N  N  H  L  R  V  L  V  D  T  L  G   : E  W  R  R  N  P  L  Q  H  L  C  G  L  Y  F  I  W  L  S :   T  M  I  D  V  N  S  M  T  L  L  *  L  K  L  T  R  Q  S  S  T  L  Q  L  *  *  I  Y  T  L  S  R :   A  A  Y  *  S  M  L  V  T  W  Q  Q  L  L  H  L  L  M  R  L  G  V  W  I  L  L  I  D  M  L  I  A  N  V  L  S  A  C  F  R  Q  I  R :   S  L  W  L  K  R  L  L  Y  Y  S  P  K  T  G  S  N  T  I  T  F  M  I  C  S  A  C   : G  M  N  *  H  Q  G  K  V  I  F  A  K  V  S  W  E  G  L  *  R  S  F  W  Q  W  R  S  I  T  R  I  S  R  R  T  S  L  I  F  T  P  T  A  *  E  K  *  L  *  G  P  T  W  K  C  *  S  F  K  T  G  F  I  H  M  H  I  F  A  K  Q  L  V  V  L  S   : D  A  I  *  S  C  M  I  L  L  *  S  Q  H  L  K  R  M  M  Q  C  P  S  C  L  L  L  R  K  R  N  *  S  K  N  *  G  K  Q  K  H  E  L  R  K :   M  Q  K  S  K  L  R  N  P  M  Q  L  V  L  L  N  L  E  S  A  M  *  S  L  *  I  L  I  H  M  V  K  N  *  F  R :   L  K  I  L  W  Q  K  P  Q  S  T  S  S  F  S  L  S  T  H  Q  I  S  W  R  H  I  C  C  P  L  T  *  T  *  G  S  R  R  S  C  L  P  C  R :   Q  *  S  I  *  C  G  W  M  Q  M  I  Q  N  H  I  C  A  * :   *  S  S  S  I  K  L  T  P  C  L  L  *  *  L  I  L  K  S  S  S  G  V  S  W  K  Q  S  D  L  P  L   : A  S  C  M  V  N  L  S  L  R  Q  T  T  L  F  L  R  N  I  K  :  N  H  *  C  I  G  L  L  W  L  S  C  Y  M  F  W  N  Q  T  R  R  L  R  L  S  N  *  L  K  T  L  L  M  I  L  F  L   : W  T  E  E  K  E  L  S  G  H  G  N  *  T  T  A  *  Q  F  T  N  S  W  R  Q  L  W  L  T  M  M  L  H  P  :  D  G  K  F  V  V  L  S  T  L  S  T  Q  L  T  L  E  V  F  K  V  Q  L  T  I  R  Y  R  N  P  L  Q  M  E  L  *  A  *  M  L  V  K  I  L  L  F  H  Q  M  V  D  *  R  N  *  M  R  L  R  I  Y  K  F  N  C  T  L  R  A  E  V  *  S  L  W  K  S  A  G  E  A  K  W  N  Y  I  K  L  L  E  Y  T  L  D  N  I  R  M  V  L  K  E  I  F  S  S  S  R  V  L  V  A  S  G  L  V  L  H  P  *  F  D  L  I  I  I  D  T  K  I  V  V  H  S  C  L  A  K  G  Q  V  K  Y  K  E  E  F  V  A  W  R  E  A  F  S  T  T  F  R  F  E  V  *  A  L  G  S  L  F  K  *  S  D  P  S  F  R  Q  H  R  K  R  M  T  *  S  A  C  C  I  F  F  I  *  F  S  I  F  L  C  V  Q  M  L  F  Y  V  K  E  I  L  P  *  Y  L  E  K  M  I  </second_frame>
            <third_frame>   I  L  *  W  F  T  K  M  F  G  I  V  F  *  K  G  A  I  Y  R  *  *  N  *  *  T  R  K  F  V  Q  S  T  C  P  S  V  *  *  I  I  C  C  K   : E  D  S  T  *  F  S  P  R  *  Q  V  S  R  S  C  R  *  L  Y  S  T  S  S  D  K   : R  G  S  F  F  V  F  *  S  L  S  V  I  *  S  S  W  Q   : G  *  Y  S  R  G  N  S  F  E  A  *  T  I  T  *  E  Y  W  W  I  P  W  E  :  S  G  E  G  T  P  F  N  T  Y  V  D  F  I  L  F  G  S   : A  L  *  *  T  *  T  V  *  H  C  S  D  *  N  *  R  G  N  R  A  H  S  N  C  N  R  F  I  L  C  Q   : E  P  H  T  K  A  C  W  *  L  G  S  S  C  C  T  C  *  *  G  *  V  Y  G  S  C  *  S  I  C  *  *  R  M  C  *  A  H  A  S  G  R  S   : G  H  F  G  *  K  D  C  C  T  I  H  Q  R  R  G  A  T  Q  *  P  L  *  Y  A  V  H  V  :  V  *  T  S  I  R  G  K  L  S  S  P  R  *  A  G  K  V  F  K  E  V  S  G  S  G  E  A  L  R  G  Y  H  G  G  P  V  *  F  S  L  L  L  P  K  K  N  D  S  E  G  L  R  G  N  V  E  V  S  R  P  A  S  F  T  C  I  F  S  Q  S  S  *  W  C  Y  Q  :  M  L  S  E  A  V  *  F  S  F  E  V  S  I  *  R  G  *  C  N  V  Q  V  A  S  F  S  E  K  E  I  K  A  K  T  E  E  S  R  S  T  S  *  E   : R  C  R  S  Q  N  *  G  I  Q  C  N  *  C  Y  *  I  W  K  A  P  C  E  A  C  R  S  *  S  T  W  *  K  I  D  S   : D  *  R  S  S  G  R  S  L  K  V  P  Q  A  S  P  *  A  L  T  R  F  L  G  D  T  F  A  V  L  *  R  K  H  E  E  A  E  D  L  A  C  L  A   : G  N  K  A  F  N  A  V  G  C  R  *  S  K  I  T  S  V  L   : D  E  V  L  P  *  S  *  L  L  A  Y  S  S  N  *  F  *  K  A  H  L  G  C  L  G  S  R  A  T  C  L  *  :  P  V  A  W  *  I  S  H  *  G  K  Q  H  F  S  *  E  T  *  R :   I  I  D  A  *  G  C  C  G  *  V  A  T  C  S  G  T  K  Q  E  G  *  G  C  Q  I  N  *  R  L  C  *  *  S  C  F  Y  :  G  R  R  K  R  N  C  Q  V  M  E  I  E  R  L  H  D  S  S  Q  T  P  G  D  N  S  G  *  P  *  C  C  I  Q :   M  E  S  S  L  C  *  V  L  C  P  L  N  L  L  W  R  Y  S  K  F  S  *  Q  S  G  T  E  I  P  C  K  W  S  C  R  P  K  C  W  *  K  F  F  S  F  I  K  W  *  I  R  E  T  K  C  A  *  G  S  T  N  L  I  V  H  F  E  L  K  C  N  L  S  G  R  V  L  E  K  P  S  G  T  I  S  S  F  *  S  I  H  L  T  T  L  G  W  F  *  R  K  F  S  A  L  R  G  F  L  L  L  L  D  W  F  S  T  P  D  L  I  *  L  S  L  T  R  R  *  *  Y  T  P  V  L  P  R  V  R  S  N  T  R  K  S  L  W  L  G  V  K  H  F  Q  Q  L  S  D  L  K  F  E  L  L  E  V  C  L  S  S  R  I  L  H  S  D  S  I  E  K  G  *  L  K  V  H  V  V  F  F  S  F  S  S  P  F  F  F  V  Y  K  C  C  F  M  *  K  K  F  C  H  S  I  *  R  K  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32554" stop="32688"/>
                    <exon start="34637" stop="34714"/>
                    <exon start="34793" stop="34846"/>
                    <exon start="34955" stop="35025"/>
                    <exon start="35944" stop="35998"/>
                    <exon start="36084" stop="36179"/>
                    <exon start="38065" stop="38193"/>
                    <exon start="38314" stop="38396"/>
                    <exon start="38489" stop="38719"/>
                    <exon start="38954" stop="39086"/>
                    <exon start="39166" stop="39273"/>
                    <exon start="39915" stop="40046"/>
                    <exon start="40773" stop="40829"/>
                    <exon start="40950" stop="41047"/>
                    <exon start="41251" stop="41309"/>
                    <exon start="41410" stop="41521"/>
                    <exon start="41637" stop="41737"/>
                    <exon start="42055" stop="42245"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYYDGLQRCLGLYSEKGQYTADEIDRLENLYRVLAHQYSRSSAVKRIPLDFLQDDKFREAADNYIRPLLTKGVPSLFSDLYPLYDHPGKADILGEIVLKLEQSLKSTGGYPGRVEKEPPSTLMWTLFYLAQHYDRREQYDIALTKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAAALADEARCMDLADRYVNSECVKRMLPADQVTLAEKTAVLFTKDGEQHNNLYDMQCMWYELASGESYLRQGELGRSLKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFRKAASGAIRCYLKLYDSPLKSASEEDDAMSKLPPSQKKKLKQKLRKAEARAKKDAEVKIEESNATSATKSGKRHVKPVDPDPHGEKLIQTEDPLAEASKYLKLLLKHSPDFLETHLLSFDVNMRKQKILLALQAIKHLMRLDADDPKSHLCLMKFFHKVDSLPTLVTDSEKLIWGVLEAERPAFSQLHGKSLIEANNTFLEKHKESLMHRAAVAELLHVLEPNKKAEAVKLIEDSVNDLVSMDGGKGTVRSWKLNDCMTVHKLLETTLVDHDAASRWKVRCAEYFVHSTYFGGIQSSANNQVQKSPANGAVGLNAGENSSLSSNGRLEKLNALKDLQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38306" e_stop="38396"/>
            <exon e_start="38489" e_stop="38719"/>
            <exon e_start="38954" e_stop="39086"/>
            <exon e_start="39166" e_stop="39273"/>
            <exon e_start="39915" e_stop="40046"/>
            <exon e_start="40773" e_stop="40829"/>
            <exon e_start="40950" e_stop="41047"/>
            <exon e_start="41251" e_stop="41309"/>
            <exon e_start="41410" e_stop="41521"/>
            <exon e_start="41637" e_stop="41737"/>
            <exon e_start="42055" e_stop="42712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.735" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38306" e_stop="38396" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38397" i_stop="38488" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38489" e_stop="38719" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38720" i_stop="38953" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38954" e_stop="39086" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39087" i_stop="39165" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39166" e_stop="39273" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="39274" i_stop="39914" i_length="641"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39915" e_stop="40046" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40047" i_stop="40772" i_length="726"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40773" e_stop="40829" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.917">
            <gDNA_intron_boundary i_start="40830" i_stop="40949" i_length="120"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40950" e_stop="41047" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41048" i_stop="41250" i_length="203"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41251" e_stop="41309" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41310" i_stop="41409" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41410" e_stop="41521" e_length="112"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41637" e_stop="41737" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.735">
            <gDNA_intron_boundary i_start="41738" i_stop="42054" i_length="317"/>
          </intron>
          <exon e_serial="11" e_score="0.955">
            <gDNA_exon_boundary e_start="42055" e_stop="42712" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38306" stop="38396"/>
              <exon start="38489" stop="38719"/>
              <exon start="38954" stop="39086"/>
              <exon start="39166" stop="39250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38505" stop="38719"/>
              <exon start="38954" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="39957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38662" stop="38719"/>
              <exon start="38954" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38998" stop="39086"/>
              <exon start="39166" stop="39273"/>
              <exon start="39915" stop="40016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39222" stop="39273"/>
              <exon start="39915" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40019" stop="40046"/>
              <exon start="40773" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40810" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40816" stop="40829"/>
              <exon start="40950" stop="41047"/>
              <exon start="41251" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41271" stop="41309"/>
              <exon start="41410" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41441" stop="41521"/>
              <exon start="41637" stop="41737"/>
              <exon start="42055" stop="42705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590557" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41667" stop="41737"/>
              <exon start="42055" stop="42458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42228" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42260" stop="42710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42285" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTGAAGGTCACTTTGGCTGAAAAGACTGCTGTACTATTCACCAAAGACGGGGAGCAACACAATAACCTTTATGATATGCAGTGCATGTG : GTATGAACTAGCATCAGGGGAAAGTTATCTTCGCCAAGGTGAGCTGGGAAGGTCTTTAAAGAAGTTTCTGGCAGTGGAGAAGCATTACGCGGATATCACGGAGGACCAGTTTGATTTTCACTCCTACTGCCTAAGAAAAATGACTCTGAGGGCCTACGTGGAAATGTTGAAGTTTCAAGACCGGCTTCATTCACATGCATATTTTCGCAAAGCAGCTAGTGGTGCTATCAG : ATGCTATCTGAAGCTGTATGATTCTCCTTTGAAGTCAGCATCTGAAGAGGATGATGCAATGTCCAAGTTGCCTCCTTCTCAGAAAAAGAAATTAAAGCAAAAACTGAGGAAAGCAGAAGCACGAGCTAAGAAA : GATGCAGAAGTCAAAATTGAGGAATCCAATGCAACTAGTGCTACTAAATCTGGAAAGCGCCATGTGAAGCCTGTAGATCCTGATCCACATGGTGAAAAATTGATTCAG : ACTGAAGATCCTCTGGCAGAAGCCTCAAAGTACCTCAAGCTTCTCCTTAAGCACTCACCAGATTTCTTGGAGACACATTTGCTGTCCTTTGACGTAAACATGAGGAAGCAGAAGATCTTGCTTGCCTTGCAG : GCAATAAAGCATTTAATGCGGTTGGATGCAGATGATCCAAAATCACATCTGTGCTTG : ATGAAGTTCTTCCATAAAGTTGACTCCTTGCCTACTCTAGTAACTGATTCTGAAAAGCTCATCTGGGGTGTCTTGGAAGCAGAGCGACCTGCCTTTAG : CCAGTTGCATGGTAAATCTCTCATTGAGGCAAACAACACTTTTCTTGAGAAACATAAAG : AATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT : GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCA : GATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGATAA</gDNA_template>
            <first_frame> D  *  R  S  L  W  L  K  R  L  L  Y  Y  S  P  K  T  G  S  N  T  I  T  F  M  I  C  S  A  C   : G  M  N  *  H  Q  G  K  V  I  F  A  K  V  S  W  E  G  L  *  R  S  F  W  Q  W  R  S  I  T  R  I  S  R  R  T  S  L  I  F  T  P  T  A  *  E  K  *  L  *  G  P  T  W  K  C  *  S  F  K  T  G  F  I  H  M  H  I  F  A  K  Q  L  V  V  L  S   : D  A  I  *  S  C  M  I  L  L  *  S  Q  H  L  K  R  M  M  Q  C  P  S  C  L  L  L  R  K  R  N  *  S  K  N  *  G  K  Q  K  H  E  L  R  K :   M  Q  K  S  K  L  R  N  P  M  Q  L  V  L  L  N  L  E  S  A  M  *  S  L  *  I  L  I  H  M  V  K  N  *  F  R :   L  K  I  L  W  Q  K  P  Q  S  T  S  S  F  S  L  S  T  H  Q  I  S  W  R  H  I  C  C  P  L  T  *  T  *  G  S  R  R  S  C  L  P  C  R :   Q  *  S  I  *  C  G  W  M  Q  M  I  Q  N  H  I  C  A  * :   *  S  S  S  I  K  L  T  P  C  L  L  *  *  L  I  L  K  S  S  S  G  V  S  W  K  Q  S  D  L  P  L   : A  S  C  M  V  N  L  S  L  R  Q  T  T  L  F  L  R  N  I  K  :  N  H  *  C  I  G  L  L  W  L  S  C  Y  M  F  W  N  Q  T  R  R  L  R  L  S  N  *  L  K  T  L  L  M  I  L  F  L   : W  T  E  E  K  E  L  S  G  H  G  N  *  T  T  A  *  Q  F  T  N  S  W  R  Q  L  W  L  T  M  M  L  H  P  :  D  G  K  F  V  V  L  S  T  L  S  T  Q  L  T  L  E  V  F  K  V  Q  L  T  I  R  Y  R  N  P  L  Q  M  E  L  *  A  *  M  L  V  K  I  L  L  F  H  Q  M  V  D  *  R  N  *  M  R  L  R  I  Y  K  F  N  C  T  L  R  A  E  V  *  S  L  W  K  S  A  G  E  A  K  W  N  Y  I  K  L  L  E  Y  T  L  D  N  I  R  M  V  L  K  E  I  F  S  S  S  R  V  L  V  A  S  G  L  V  L  H  P  *  F  D  L  I  I  I  D  T  K  I  V  V  H  S  C  L  A  K  G  Q  V  K  Y  K  E  E  F  V  A  W  R  E  A  F  S  T  T  F  R  F  E  V  *  A  L  G  S  L  F  K  *  S  D  P  S  F  R  Q  H  R  K  R  M  T  *  S  A  C  C  I  F  F  I  *  F  S  I  F  L  C  V  Q  M  L  F  Y  V  K  E  I  L  P  *  Y  L  E  K  M  I  </first_frame>
            <second_frame>  T  E  G  H  F  G  *  K  D  C  C  T  I  H  Q  R  R  G  A  T  Q  *  P  L  *  Y  A  V  H  V  :  V  *  T  S  I  R  G  K  L  S  S  P  R  *  A  G  K  V  F  K  E  V  S  G  S  G  E  A  L  R  G  Y  H  G  G  P  V  *  F  S  L  L  L  P  K  K  N  D  S  E  G  L  R  G  N  V  E  V  S  R  P  A  S  F  T  C  I  F  S  Q  S  S  *  W  C  Y  Q  :  M  L  S  E  A  V  *  F  S  F  E  V  S  I  *  R  G  *  C  N  V  Q  V  A  S  F  S  E  K  E  I  K  A  K  T  E  E  S  R  S  T  S  *  E   : R  C  R  S  Q  N  *  G  I  Q  C  N  *  C  Y  *  I  W  K  A  P  C  E  A  C  R  S  *  S  T  W  *  K  I  D  S   : D  *  R  S  S  G  R  S  L  K  V  P  Q  A  S  P  *  A  L  T  R  F  L  G  D  T  F  A  V  L  *  R  K  H  E  E  A  E  D  L  A  C  L  A   : G  N  K  A  F  N  A  V  G  C  R  *  S  K  I  T  S  V  L   : D  E  V  L  P  *  S  *  L  L  A  Y  S  S  N  *  F  *  K  A  H  L  G  C  L  G  S  R  A  T  C  L  *  :  P  V  A  W  *  I  S  H  *  G  K  Q  H  F  S  *  E  T  *  R :   I  I  D  A  *  G  C  C  G  *  V  A  T  C  S  G  T  K  Q  E  G  *  G  C  Q  I  N  *  R  L  C  *  *  S  C  F  Y  :  G  R  R  K  R  N  C  Q  V  M  E  I  E  R  L  H  D  S  S  Q  T  P  G  D  N  S  G  *  P  *  C  C  I  Q :   M  E  S  S  L  C  *  V  L  C  P  L  N  L  L  W  R  Y  S  K  F  S  *  Q  S  G  T  E  I  P  C  K  W  S  C  R  P  K  C  W  *  K  F  F  S  F  I  K  W  *  I  R  E  T  K  C  A  *  G  S  T  N  L  I  V  H  F  E  L  K  C  N  L  S  G  R  V  L  E  K  P  S  G  T  I  S  S  F  *  S  I  H  L  T  T  L  G  W  F  *  R  K  F  S  A  L  R  G  F  L  L  L  L  D  W  F  S  T  P  D  L  I  *  L  S  L  T  R  R  *  *  Y  T  P  V  L  P  R  V  R  S  N  T  R  K  S  L  W  L  G  V  K  H  F  Q  Q  L  S  D  L  K  F  E  L  L  E  V  C  L  S  S  R  I  L  H  S  D  S  I  E  K  G  *  L  K  V  H  V  V  F  F  S  F  S  S  P  F  F  F  V  Y  K  C  C  F  M  *  K  K  F  C  H  S  I  *  R  K  *  * </second_frame>
            <third_frame>   L  K  V  T  L  A  E  K  T  A  V  L  F  T  K  D  G  E  Q  H  N  N  L  Y  D  M  Q  C  M  W :   Y  E  L  A  S  G  E  S  Y  L  R  Q  G  E  L  G  R  S  L  K  K  F  L  A  V  E  K  H  Y  A  D  I  T  E  D  Q  F  D  F  H  S  Y  C  L  R  K  M  T  L  R  A  Y  V  E  M  L  K  F  Q  D  R  L  H  S  H  A  Y  F  R  K  A  A  S  G  A  I  R :   C  Y  L  K  L  Y  D  S  P  L  K  S  A  S  E  E  D  D  A  M  S  K  L  P  P  S  Q  K  K  K  L  K  Q  K  L  R  K  A  E  A  R  A  K  K  :  D  A  E  V  K  I  E  E  S  N  A  T  S  A  T  K  S  G  K  R  H  V  K  P  V  D  P  D  P  H  G  E  K  L  I  Q  :  T  E  D  P  L  A  E  A  S  K  Y  L  K  L  L  L  K  H  S  P  D  F  L  E  T  H  L  L  S  F  D  V  N  M  R  K  Q  K  I  L  L  A  L  Q  :  A  I  K  H  L  M  R  L  D  A  D  D  P  K  S  H  L  C  L  :  M  K  F  F  H  K  V  D  S  L  P  T  L  V  T  D  S  E  K  L  I  W  G  V  L  E  A  E  R  P  A  F  S :   Q  L  H  G  K  S  L  I  E  A  N  N  T  F  L  E  K  H  K   : E  S  L  M  H  R  A  A  V  A  E  L  L  H  V  L  E  P  N  K  K  A  E  A  V  K  L  I  E  D  S  V  N  D  L  V  S  M :   D  G  G  K  G  T  V  R  S  W  K  L  N  D  C  M  T  V  H  K  L  L  E  T  T  L  V  D  H  D  A  A  S   : R  W  K  V  R  C  A  E  Y  F  V  H  S  T  Y  F  G  G  I  Q  S  S  A  N  N  Q  V  Q  K  S  P  A  N  G  A  V  G  L  N  A  G  E  N  S  S  L  S  S  N  G  R  L  E  K  L  N  A  L  K  D  L  Q  I  *  L  Y  T  S  S  *  S  V  I  S  L  E  E  C  W  R  S  Q  V  E  L  Y  Q  A  S  R  V  Y  T  *  Q  H  *  D  G  S  K  G  N  F  Q  L  F  E  G  S  C  C  F  W  T  G  S  P  P  L  I  *  S  D  Y  H  *  H  E  D  S  S  T  L  L  S  C  Q  G  S  G  Q  I  Q  G  R  V  C  G  L  A  *  S  I  F  N  N  F  Q  I  *  S  L  S  S  W  K  S  V  *  V  V  G  S  F  I  P  T  A  *  K  K  D  D  L  K  C  M  L  Y  F  F  H  L  V  L  H  F  S  L  C  T  N  A  V  L  C  E  R  N  F  A  I  V  F  R  E  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38308" stop="38396"/>
                    <exon start="38489" stop="38719"/>
                    <exon start="38954" stop="39086"/>
                    <exon start="39166" stop="39273"/>
                    <exon start="39915" stop="40046"/>
                    <exon start="40773" stop="40829"/>
                    <exon start="40950" stop="41047"/>
                    <exon start="41251" stop="41309"/>
                    <exon start="41410" stop="41521"/>
                    <exon start="41637" stop="41737"/>
                    <exon start="42055" stop="42245"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVTLAEKTAVLFTKDGEQHNNLYDMQCMWYELASGESYLRQGELGRSLKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFRKAASGAIRCYLKLYDSPLKSASEEDDAMSKLPPSQKKKLKQKLRKAEARAKKDAEVKIEESNATSATKSGKRHVKPVDPDPHGEKLIQTEDPLAEASKYLKLLLKHSPDFLETHLLSFDVNMRKQKILLALQAIKHLMRLDADDPKSHLCLMKFFHKVDSLPTLVTDSEKLIWGVLEAERPAFSQLHGKSLIEANNTFLEKHKESLMHRAAVAELLHVLEPNKKAEAVKLIEDSVNDLVSMDGGKGTVRSWKLNDCMTVHKLLETTLVDHDAASRWKVRCAEYFVHSTYFGGIQSSANNQVQKSPANGAVGLNAGENSSLSSNGRLEKLNALKDLQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41399" e_stop="41521"/>
            <exon e_start="41637" e_stop="42712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41399" e_stop="41521" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41522" i_stop="41636" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="41637" e_stop="42712" e_length="1076"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41399" stop="41521"/>
              <exon start="41637" stop="42255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42228" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42260" stop="42710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42285" stop="42712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGTTTGCAGAATCATTGATGCATAGGGCTGCTGTGGCTGAGTTGCTACATGTTCTGGAACCAAACAAGAAGGCTGAGGCTGTCAAATTAATTGAAGACTCTGTTAATGATCTTGTTTCTAT : GGACGGAGGAAAAGGAACTGTCAGGTCATGGAAATTGAACGACTGCATGACAGTTCACAAACTCCTGGAGACAACTCTGGTTGACCATGATGCTGCATCCAGTGAGTTCTTTACCATTGCGCACATCCTTCTGTCTTTTCATATTGTACATCTCAAGTCTTCTCTTGGCCTGAAGTTGAGCTGAAGTTAACTGCATTCATATGTTTGACTCTGGTTCTGGTATATTGCTATTGTAGCCTGTTCTTTTTTTTTTTCATGCATCCATTCCTTTTCTGTTGATTTGGGTGGCTGGTGGATATATTATTTTGTCTACGTTATGTATGAGATGATCCTTTTCTGTCAAATACATAAGTGACAACGTACTTACACGATATTTGATGATTCTATGGGTAGTGATGTTTTTGAGACATTGTTGTAGGATGGAAAGTTCGTTGTGCTGAGTACTTTGTCCACTCAACTTACTTTGGAGGTATTCAAAGTTCAGCTAACAATCAGGTACAGAAATCCCCTGCAAATGGAGCTGTAGGCCTAAATGCTGGTGAAAATTCTTCTCTTTCATCAAATGGTAGATTAGAGAAACTAAATGCGCTTAAGGATCTACAAATTTAATTGTACACTTCGAGCTGAAGTGTAATCTCTCTGGAAGAGTGCTGGAGAAGCCAAGTGGAACTATATCAAGCTTCTAGAGTATACACTTGACAACATTAGGATGGTTCTAAAGGAAATTTTCAGCTCTTCGAGGGTTCTTGTTGCTTCTGGACTGGTTCTCCACCCCTGATTTGATCTGATTATCATTGACACGAAGATAGTAGTACACTCCTGTCTTGCCAAGGGTCAGGTCAAATACAAGGAAGAGTTTGTGGCTTGGCGTGAAGCATTTTCAACAACTTTCAGATTTGAAGTTTGAGCTCTTGGAAGTCTGTTTAAGTAGTCGGATCCTTCATTCCGACAGCATAGAAAAAGGATGACTTAAAGTGCATGTTGTATTTTTTTCATTTAGTTCTCCATTTTTCTTTGTGTACAAATGCTGTTTTATGTGAAAGAAATTTTGCCATAGTATTTAGAGAAAATGATAA</gDNA_template>
            <first_frame> G  V  C  R  I  I  D  A  *  G  C  C  G  *  V  A  T  C  S  G  T  K  Q  E  G  *  G  C  Q  I  N  *  R  L  C  *  *  S  C  F  Y  :  G  R  R  K  R  N  C  Q  V  M  E  I  E  R  L  H  D  S  S  Q  T  P  G  D  N  S  G  *  P  *  C  C  I  Q  *  V  L  Y  H  C  A  H  P  S  V  F  S  Y  C  T  S  Q  V  F  S  W  P  E  V  E  L  K  L  T  A  F  I  C  L  T  L  V  L  V  Y  C  Y  C  S  L  F  F  F  F  F  M  H  P  F  L  F  C  *  F  G  W  L  V  D  I  L  F  C  L  R  Y  V  *  D  D  P  F  L  S  N  T  *  V  T  T  Y  L  H  D  I  *  *  F  Y  G  *  *  C  F  *  D  I  V  V  G  W  K  V  R  C  A  E  Y  F  V  H  S  T  Y  F  G  G  I  Q  S  S  A  N  N  Q  V  Q  K  S  P  A  N  G  A  V  G  L  N  A  G  E  N  S  S  L  S  S  N  G  R  L  E  K  L  N  A  L  K  D  L  Q  I  *  L  Y  T  S  S  *  S  V  I  S  L  E  E  C  W  R  S  Q  V  E  L  Y  Q  A  S  R  V  Y  T  *  Q  H  *  D  G  S  K  G  N  F  Q  L  F  E  G  S  C  C  F  W  T  G  S  P  P  L  I  *  S  D  Y  H  *  H  E  D  S  S  T  L  L  S  C  Q  G  S  G  Q  I  Q  G  R  V  C  G  L  A  *  S  I  F  N  N  F  Q  I  *  S  L  S  S  W  K  S  V  *  V  V  G  S  F  I  P  T  A  *  K  K  D  D  L  K  C  M  L  Y  F  F  H  L  V  L  H  F  S  L  C  T  N  A  V  L  C  E  R  N  F  A  I  V  F  R  E  N  D   </first_frame>
            <second_frame>  V  F  A  E  S  L  M  H  R  A  A  V  A  E  L  L  H  V  L  E  P  N  K  K  A  E  A  V  K  L  I  E  D  S  V  N  D  L  V  S  M :   D  G  G  K  G  T  V  R  S  W  K  L  N  D  C  M  T  V  H  K  L  L  E  T  T  L  V  D  H  D  A  A  S  S  E  F  F  T  I  A  H  I  L  L  S  F  H  I  V  H  L  K  S  S  L  G  L  K  L  S  *  S  *  L  H  S  Y  V  *  L  W  F  W  Y  I  A  I  V  A  C  S  F  F  F  S  C  I  H  S  F  S  V  D  L  G  G  W  W  I  Y  Y  F  V  Y  V  M  Y  E  M  I  L  F  C  Q  I  H  K  *  Q  R  T  Y  T  I  F  D  D  S  M  G  S  D  V  F  E  T  L  L  *  D  G  K  F  V  V  L  S  T  L  S  T  Q  L  T  L  E  V  F  K  V  Q  L  T  I  R  Y  R  N  P  L  Q  M  E  L  *  A  *  M  L  V  K  I  L  L  F  H  Q  M  V  D  *  R  N  *  M  R  L  R  I  Y  K  F  N  C  T  L  R  A  E  V  *  S  L  W  K  S  A  G  E  A  K  W  N  Y  I  K  L  L  E  Y  T  L  D  N  I  R  M  V  L  K  E  I  F  S  S  S  R  V  L  V  A  S  G  L  V  L  H  P  *  F  D  L  I  I  I  D  T  K  I  V  V  H  S  C  L  A  K  G  Q  V  K  Y  K  E  E  F  V  A  W  R  E  A  F  S  T  T  F  R  F  E  V  *  A  L  G  S  L  F  K  *  S  D  P  S  F  R  Q  H  R  K  R  M  T  *  S  A  C  C  I  F  F  I  *  F  S  I  F  L  C  V  Q  M  L  F  Y  V  K  E  I  L  P  *  Y  L  E  K  M  I  </second_frame>
            <third_frame>   C  L  Q  N  H  *  C  I  G  L  L  W  L  S  C  Y  M  F  W  N  Q  T  R  R  L  R  L  S  N  *  L  K  T  L  L  M  I  L  F  L   : W  T  E  E  K  E  L  S  G  H  G  N  *  T  T  A  *  Q  F  T  N  S  W  R  Q  L  W  L  T  M  M  L  H  P  V  S  S  L  P  L  R  T  S  F  C  L  F  I  L  Y  I  S  S  L  L  L  A  *  S  *  A  E  V  N  C  I  H  M  F  D  S  G  S  G  I  L  L  L  *  P  V  L  F  F  F  H  A  S  I  P  F  L  L  I  W  V  A  G  G  Y  I  I  L  S  T  L  C  M  R  *  S  F  S  V  K  Y  I  S  D  N  V  L  T  R  Y  L  M  I  L  W  V  V  M  F  L  R  H  C  C  R  M  E  S  S  L  C  *  V  L  C  P  L  N  L  L  W  R  Y  S  K  F  S  *  Q  S  G  T  E  I  P  C  K  W  S  C  R  P  K  C  W  *  K  F  F  S  F  I  K  W  *  I  R  E  T  K  C  A  *  G  S  T  N  L  I  V  H  F  E  L  K  C  N  L  S  G  R  V  L  E  K  P  S  G  T  I  S  S  F  *  S  I  H  L  T  T  L  G  W  F  *  R  K  F  S  A  L  R  G  F  L  L  L  L  D  W  F  S  T  P  D  L  I  *  L  S  L  T  R  R  *  *  Y  T  P  V  L  P  R  V  R  S  N  T  R  K  S  L  W  L  G  V  K  H  F  Q  Q  L  S  D  L  K  F  E  L  L  E  V  C  L  S  S  R  I  L  H  S  D  S  I  E  K  G  *  L  K  V  H  V  V  F  F  S  F  S  S  P  F  F  F  V  Y  K  C  C  F  M  *  K  K  F  C  H  S  I  *  R  K  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41400" stop="41521"/>
                    <exon start="41637" stop="41820"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFAESLMHRAAVAELLHVLEPNKKAEAVKLIEDSVNDLVSMDGGKGTVRSWKLNDCMTVHKLLETTLVDHDAASSEFFTIAHILLSFHIVHLKSSLGLKLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42042" stop="42245"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIVVGWKVRCAEYFVHSTYFGGIQSSANNQVQKSPANGAVGLNAGENSSLSSNGRLEKLNALKDLQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42699" PGL_stop="42363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42699" e_stop="42363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42699" e_stop="42363" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42699" stop="42363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATACTATGGCAAAATTTCTTTCACATAAAACAGCATTTGTACACAAAGAAAAATGGAGAACTAAATGAAAAAAATACAACATGCACTTTAAGTCATCCTTTTTCTATGCTGTCGGAATGAAGGATCCGACTACTTAAACAGACTTCCAAGAGCTCAAACTTCAAATCTGAAAGTTGTTGAAAATGCTTCACGCCAAGCCACAAACTCTTCCTTGTATTTGACCTGACCCTTGGCAAGACAGGAGTGTACTACTATCTTCGTGTCAATGATAATCAGATCAAATCAGGGGTGGAGAACCAGTCCAGAAGCAACAAGAACCCTCGAAGAGCTGAAA</gDNA_template>
            <first_frame> *  I  L  W  Q  N  F  F  H  I  K  Q  H  L  Y  T  K  K  N  G  E  L  N  E  K  N  T  T  C  T  L  S  H  P  F  S  M  L  S  E  *  R  I  R  L  L  K  Q  T  S  K  S  S  N  F  K  S  E  S  C  *  K  C  F  T  P  S  H  K  L  F  L  V  F  D  L  T  L  G  K  T  G  V  Y  Y  Y  L  R  V  N  D  N  Q  I  K  S  G  V  E  N  Q  S  R  S  N  K  N  P  R  R  A  E  </first_frame>
            <second_frame>  K  Y  Y  G  K  I  S  F  T  *  N  S  I  C  T  Q  R  K  M  E  N  *  M  K  K  I  Q  H  A  L  *  V  I  L  F  L  C  C  R  N  E  G  S  D  Y  L  N  R  L  P  R  A  Q  T  S  N  L  K  V  V  E  N  A  S  R  Q  A  T  N  S  S  L  Y  L  T  *  P  L  A  R  Q  E  C  T  T  I  F  V  S  M  I  I  R  S  N  Q  G  W  R  T  S  P  E  A  T  R  T  L  E  E  L  K </second_frame>
            <third_frame>   N  T  M  A  K  F  L  S  H  K  T  A  F  V  H  K  E  K  W  R  T  K  *  K  K  Y  N  M  H  F  K  S  S  F  F  Y  A  V  G  M  K  D  P  T  T  *  T  D  F  Q  E  L  K  L  Q  I  *  K  L  L  K  M  L  H  A  K  P  Q  T  L  P  C  I  *  P  D  P  W  Q  D  R  S  V  L  L  S  S  C  Q  *  *  S  D  Q  I  R  G  G  E  P  V  Q  K  Q  Q  E  P  S  K  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0046F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56300" PGL_stop="57689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56300" e_stop="56481"/>
            <exon e_start="56663" e_stop="56756"/>
            <exon e_start="57387" e_stop="57689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56300" e_stop="56481" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56482" i_stop="56662" i_length="181"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56663" e_stop="56756" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.845">
            <gDNA_intron_boundary i_start="56757" i_stop="57386" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="57387" e_stop="57689" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56300" stop="56481"/>
              <exon start="56663" stop="56712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56403" stop="56481"/>
              <exon start="56663" stop="56756"/>
              <exon start="57387" stop="57689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGTGTGCTTACCGGAAAAAGAACAGTTTTAACGGACGTGAAGCTGAATCCAATAATAAAATGTACGTCAAAGTTAGCATGGATGGAGCACCGTTTTTGAGGAAAGTTGATTTGAGTACTCATAAGGGTTATGATCAACTTGTTATGGCTCTTGAAAAACTCTTTGATTGCTATGGAATTG : GAGAAGCATTGGAGGATGCAGATAAGTCAGAGTTCGTTCCAATCTATGAAGACAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCATGGAT : AATGTTCAGTGAATCATGCAAAAGGCTAAGGATCATGAAGAGATCAGAGGCAAAAGTGATAGGGCTTGGAGCAAGAGACTTTCTCAAGGGAATGTCTCAAGAGAAATAGAGTGGATGATTCAAGCTATATTTTTACATTAATATATAATTGTAATTGTAATCTTAGGTGTGATAAGACACCCTAGACTTAAAATCAATTTCTGATTTGATTTCCTCTTAATTAGCTTAATTATTGTAGTAATCAGTACCTTATTTGCTCTTAAATGACAATTTTCGTATGTATAATAAGGCTATATGTGTAAC</gDNA_template>
            <first_frame> C  V  C  L  P  E  K  E  Q  F  *  R  T  *  S  *  I  Q  *  *  N  V  R  Q  S  *  H  G  W  S  T  V  F  E  E  S  *  F  E  Y  S  *  G  L  *  S  T  C  Y  G  S  *  K  T  L  *  L  L  W  N  W :   R  S  I  G  G  C  R  *  V  R  V  R  S  N  L  *  R  Q  R  W  R  L  D  A  C  R  R  C  S  M  D  :  N  V  Q  *  I  M  Q  K  A  K  D  H  E  E  I  R  G  K  S  D  R  A  W  S  K  R  L  S  Q  G  N  V  S  R  E  I  E  W  M  I  Q  A  I  F  L  H  *  Y  I  I  V  I  V  I  L  G  V  I  R  H  P  R  L  K  I  N  F  *  F  D  F  L  L  I  S  L  I  I  V  V  I  S  T  L  F  A  L  K  *  Q  F  S  Y  V  *  *  G  Y  M  C  N </first_frame>
            <second_frame>  V  C  A  Y  R  K  K  N  S  F  N  G  R  E  A  E  S  N  N  K  M  Y  V  K  V  S  M  D  G  A  P  F  L  R  K  V  D  L  S  T  H  K  G  Y  D  Q  L  V  M  A  L  E  K  L  F  D  C  Y  G  I   : G  E  A  L  E  D  A  D  K  S  E  F  V  P  I  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  I :   M  F  S  E  S  C  K  R  L  R  I  M  K  R  S  E  A  K  V  I  G  L  G  A  R  D  F  L  K  G  M  S  Q  E  K  *  S  G  *  F  K  L  Y  F  Y  I  N  I  *  L  *  L  *  S  *  V  *  *  D  T  L  D  L  K  S  I  S  D  L  I  S  S  *  L  A  *  L  L  *  *  S  V  P  Y  L  L  L  N  D  N  F  R  M  Y  N  K  A  I  C  V   </second_frame>
            <third_frame>   C  V  L  T  G  K  R  T  V  L  T  D  V  K  L  N  P  I  I  K  C  T  S  K  L  A  W  M  E  H  R  F  *  G  K  L  I  *  V  L  I  R  V  M  I  N  L  L  W  L  L  K  N  S  L  I  A  M  E  L  :  E  K  H  W  R  M  Q  I  S  Q  S  S  F  Q  S  M  K  T  K  M  E  I  G  C  L  S  A  M  F  H  G   : *  C  S  V  N  H  A  K  G  *  G  S  *  R  D  Q  R  Q  K  *  *  G  L  E  Q  E  T  F  S  R  E  C  L  K  R  N  R  V  D  D  S  S  Y  I  F  T  L  I  Y  N  C  N  C  N  L  R  C  D  K  T  P  *  T  *  N  Q  F  L  I  *  F  P  L  N  *  L  N  Y  C  S  N  Q  Y  L  I  C  S  *  M  T  I  F  V  C  I  I  R  L  Y  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56301" stop="56481"/>
                    <exon start="56663" stop="56756"/>
                    <exon start="57387" stop="57495"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCAYRKKNSFNGREAESNNKMYVKVSMDGAPFLRKVDLSTHKGYDQLVMALEKLFDCYGIGEALEDADKSEFVPIYEDKDGDWMLVGDVPWIMFSESCKRLRIMKRSEAKVIGLGARDFLKGMSQEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63526" PGL_stop="66614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63526" e_stop="63899"/>
            <exon e_start="63974" e_stop="64155"/>
            <exon e_start="64260" e_stop="64371"/>
            <exon e_start="64552" e_stop="64613"/>
            <exon e_start="64695" e_stop="65008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63526" e_stop="63899" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63974" e_stop="64155" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.895">
            <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64260" e_stop="64371" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64552" e_stop="64613" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="64695" e_stop="65008" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63526" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63587" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63600" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="65000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63600" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63608" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63610" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63611" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63612" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63613" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63613" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63616" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="65008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63616" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="65003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63616" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63617" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63617" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63618" stop="63899"/>
              <exon start="63974" stop="64095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63643" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63650" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63864" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63879" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="65000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63998" stop="64155"/>
              <exon start="64260" stop="64327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64303" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGGCTAACATGAAAGCCTCCGTCCACCTACCCGAGAGCATATATAGTGGCCTAACCGCATTTTTTCAAAGCACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA : GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT : GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA : AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG : CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTATGTTTTTGTCGTTACGATTGTAGATCTCAATATGAATAAAGCCACTTGGGGAAAAAAAATCAAATCCTTTT</gDNA_template>
            <first_frame> R  M  A  N  M  K  A  S  V  H  L  P  E  S  I  Y  S  G  L  T  A  F  F  Q  S  T  K  R  Y  F  I  S  P  N  Y  L  K  R  G  K  M  S  S  E  T  A  K  S  A  N  G  L  T  E  T  N  N  S  G  L  N  F  N  E  T  E  L  T  L  G  L  P  G  E  S  R  K  Q  I  S  G  A  K  R  G  N  S  D  G  M  E  L  S  L  G  S  S  T  S  G  E  R  R  R  D  I  C  E  V  N  H  S  K  N  E  I  S  T  G  N  K  P  P  A  K :   A  Q  V  I  G  W  P  P  V  R  S  Y  R  K  N  V  I  E  K  C  K  Y  V  K  V  A  V  D  G  A  P  Y  L  R  K  V  D  L  E  M  Y  D  S  Y  Q  K  L  L  N  A  L  E  N  M  F  T  C  L  T  I   : C  N  S  Q  S  E  S  K  L  M  D  L  T  N  G  V  E  Y  V  P  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  K :   M  F  V  D  T  C  K  R  I  R  L  M  K  S  T  E  A  I  G  L   : A  P  R  T  P  G  R  S  S  S  *  S  *  I  K  K  L  N  N  C  M  Y  R  Y  Q  L  A  *  V  N  K  F  F  Y  F  Y  L  L  R  S  L  I  I  G  *  V  I  Y  N  *  A  I  T  *  K  C  I  L  C  Y  D  A  S  R  V  S  E  D  D  *  F  Y  *  Y  C  I  C  I  F  I  C  M  F  L  S  L  R  L  *  I  S  I  *  I  K  P  L  G  E  K  K  S  N  P  F </first_frame>
            <second_frame>  E  W  L  T  *  K  P  P  S  T  Y  P  R  A  Y  I  V  A  *  P  H  F  F  K  A  P  K  D  I  S  F  H  Q  T  I  *  K  G  G  K  C  H  R  R  Q  P  N  Q  R  T  V  *  R  K  Q  I  I  P  A  L  I  S  M  K  L  S  *  L  S  A  Y  P  A  N  R  G  S  K  S  P  V  Q  N  V  E  I  P  T  V  W  N  *  A  *  E  A  Q  L  P  V  N  A  A  V  I  S  A  K  L  I  T  R  K  T  K  S  L  P  E  T  N  L  Q  Q   : R  H  K  *  L  D  G  R  R  *  D  H  T  E  K  T  *  *  K  S  A  N  T  *  R  *  Q  L  T  E  L  L  T  *  E  K  *  I  W  R  C  T  T  V  T  R  S  C  *  M  L  *  K  T  C  L  L  A  *  Q  S  :  V  I  L  K  V  K  A  S  L  W  T  L  Q  M  V  *  N  M  Y  L  L  M  K  I  K  M  E  T  G  C  L  *  E  M  F  H  G   : K  C  L  L  I  R  V  R  E  L  D  *  *  R  A  R  R  L  *  D  *  :  L  Q  E  H  L  G  D  R  R  V  E  A  K  *  R  S  L  I  T  A  C  T  D  T  N  W  L  E  *  I  S  F  F  I  F  T  F  C  V  L  *  L  *  D  K  *  Y  I  I  R  Q  L  L  R  S  V  F  C  A  T  M  L  P  V  *  V  K  T  I  D  F  I  N  T  V  F  V  F  L  F  V  C  F  C  R  Y  D  C  R  S  Q  Y  E  *  S  H  L  G  K  K  N  Q  I  L   </second_frame>
            <third_frame>   N  G  *  H  E  S  L  R  P  P  T  R  E  H  I  *  W  P  N  R  I  F  S  K  H  Q  K  I  F  H  F  T  K  L  S  K  K  G  E  N  V  I  G  D  S  Q  I  S  E  R  F  D  G  N  K  *  F  R  P  *  F  Q  *  N  *  A  N  S  R  L  T  R  R  I  A  E  A  N  L  R  C  K  T  W  K  F  R  R  Y  G  I  K  P  R  K  L  N  F  R  *  T  P  P  *  Y  L  R  S  *  S  L  E  K  R  N  L  Y  R  K  Q  T  S  S  K  :  G  T  S  N  W  M  A  A  G  E  I  I  Q  K  K  R  D  R  K  V  Q  I  R  E  G  S  S  *  R  S  S  L  L  E  K  S  R  S  G  D  V  R  Q  L  P  E  V  V  E  C  F  R  K  H  V  Y  L  P  N  N  L :   *  F  S  K  *  K  Q  A  Y  G  P  Y  K  W  C  R  I  C  T  Y  L  *  R  *  R  W  R  L  D  A  C  R  R  C  S  M  E  :  N  V  C  *  Y  V  *  E  N  *  I  D  E  E  H  G  G  Y  R  I  S :   S  K  N  T  W  E  I  V  E  L  K  L  N  K  E  A  *  *  L  H  V  Q  I  P  T  G  L  S  E  *  V  F  L  F  L  P  F  A  F  F  N  Y  R  I  S  N  I  *  L  G  N  Y  L  E  V  Y  F  V  L  R  C  F  P  C  E  *  R  R  L  I  L  L  I  L  Y  L  Y  F  Y  L  Y  V  F  V  V  T  I  V  D  L  N  M  N  K  A  T  W  G  K  K  I  K  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63526" stop="63899"/>
                    <exon start="63974" stop="64155"/>
                    <exon start="64260" stop="64371"/>
                    <exon start="64552" stop="64613"/>
                    <exon start="64695" stop="64726"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMANMKASVHLPESIYSGLTAFFQSTKRYFISPNYLKRGKMSSETAKSANGLTETNNSGLNFNETELTLGLPGESRKQISGAKRGNSDGMELSLGSSTSGERRRDICEVNHSKNEISTGNKPPAKAQVIGWPPVRSYRKNVIEKCKYVKVAVDGAPYLRKVDLEMYDSYQKLLNALENMFTCLTICNSQSESKLMDLTNGVEYVPTYEDKDGDWMLVGDVPWKMFVDTCKRIRLMKSTEAIGLAPRTPGRSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63526" e_stop="63899"/>
            <exon e_start="63974" e_stop="64155"/>
            <exon e_start="64260" e_stop="64371"/>
            <exon e_start="64552" e_stop="64613"/>
            <exon e_start="64695" e_stop="64938"/>
            <exon e_start="66600" e_stop="66614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63526" e_stop="63899" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63900" i_stop="63973" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63974" e_stop="64155" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.895">
            <gDNA_intron_boundary i_start="64156" i_stop="64259" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64260" e_stop="64371" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64552" e_stop="64613" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64695" e_stop="64938" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64939" i_stop="66599" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="0.733">
            <gDNA_exon_boundary e_start="66600" e_stop="66614" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63526" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63587" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63600" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63608" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63610" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63611" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63612" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63613" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63613" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63616" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63617" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63617" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63618" stop="63899"/>
              <exon start="63974" stop="64095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63643" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63650" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63864" stop="63899"/>
              <exon start="63974" stop="64155"/>
              <exon start="64260" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63998" stop="64155"/>
              <exon start="64260" stop="64327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64303" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64330" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64938"/>
              <exon start="66600" stop="66614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGGCTAACATGAAAGCCTCCGTCCACCTACCCGAGAGCATATATAGTGGCCTAACCGCATTTTTTCAAAGCACCAAAAGATATTTCATTTCACCAAACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAA : GGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCT : GTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA : AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG : CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTAT : AGTAAAAAGAAAAAG</gDNA_template>
            <first_frame> R  M  A  N  M  K  A  S  V  H  L  P  E  S  I  Y  S  G  L  T  A  F  F  Q  S  T  K  R  Y  F  I  S  P  N  Y  L  K  R  G  K  M  S  S  E  T  A  K  S  A  N  G  L  T  E  T  N  N  S  G  L  N  F  N  E  T  E  L  T  L  G  L  P  G  E  S  R  K  Q  I  S  G  A  K  R  G  N  S  D  G  M  E  L  S  L  G  S  S  T  S  G  E  R  R  R  D  I  C  E  V  N  H  S  K  N  E  I  S  T  G  N  K  P  P  A  K :   A  Q  V  I  G  W  P  P  V  R  S  Y  R  K  N  V  I  E  K  C  K  Y  V  K  V  A  V  D  G  A  P  Y  L  R  K  V  D  L  E  M  Y  D  S  Y  Q  K  L  L  N  A  L  E  N  M  F  T  C  L  T  I   : C  N  S  Q  S  E  S  K  L  M  D  L  T  N  G  V  E  Y  V  P  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  K :   M  F  V  D  T  C  K  R  I  R  L  M  K  S  T  E  A  I  G  L   : A  P  R  T  P  G  R  S  S  S  *  S  *  I  K  K  L  N  N  C  M  Y  R  Y  Q  L  A  *  V  N  K  F  F  Y  F  Y  L  L  R  S  L  I  I  G  *  V  I  Y  N  *  A  I  T  *  K  C  I  L  C  Y  D  A  S  R  V  S  E  D  D  *  F  Y  *  Y  C  I  C  I  F  I  C  I :   V  K  R  K   </first_frame>
            <second_frame>  E  W  L  T  *  K  P  P  S  T  Y  P  R  A  Y  I  V  A  *  P  H  F  F  K  A  P  K  D  I  S  F  H  Q  T  I  *  K  G  G  K  C  H  R  R  Q  P  N  Q  R  T  V  *  R  K  Q  I  I  P  A  L  I  S  M  K  L  S  *  L  S  A  Y  P  A  N  R  G  S  K  S  P  V  Q  N  V  E  I  P  T  V  W  N  *  A  *  E  A  Q  L  P  V  N  A  A  V  I  S  A  K  L  I  T  R  K  T  K  S  L  P  E  T  N  L  Q  Q   : R  H  K  *  L  D  G  R  R  *  D  H  T  E  K  T  *  *  K  S  A  N  T  *  R  *  Q  L  T  E  L  L  T  *  E  K  *  I  W  R  C  T  T  V  T  R  S  C  *  M  L  *  K  T  C  L  L  A  *  Q  S  :  V  I  L  K  V  K  A  S  L  W  T  L  Q  M  V  *  N  M  Y  L  L  M  K  I  K  M  E  T  G  C  L  *  E  M  F  H  G   : K  C  L  L  I  R  V  R  E  L  D  *  *  R  A  R  R  L  *  D  *  :  L  Q  E  H  L  G  D  R  R  V  E  A  K  *  R  S  L  I  T  A  C  T  D  T  N  W  L  E  *  I  S  F  F  I  F  T  F  C  V  L  *  L  *  D  K  *  Y  I  I  R  Q  L  L  R  S  V  F  C  A  T  M  L  P  V  *  V  K  T  I  D  F  I  N  T  V  F  V  F  L  F  V   : *  *  K  E  K  </second_frame>
            <third_frame>   N  G  *  H  E  S  L  R  P  P  T  R  E  H  I  *  W  P  N  R  I  F  S  K  H  Q  K  I  F  H  F  T  K  L  S  K  K  G  E  N  V  I  G  D  S  Q  I  S  E  R  F  D  G  N  K  *  F  R  P  *  F  Q  *  N  *  A  N  S  R  L  T  R  R  I  A  E  A  N  L  R  C  K  T  W  K  F  R  R  Y  G  I  K  P  R  K  L  N  F  R  *  T  P  P  *  Y  L  R  S  *  S  L  E  K  R  N  L  Y  R  K  Q  T  S  S  K  :  G  T  S  N  W  M  A  A  G  E  I  I  Q  K  K  R  D  R  K  V  Q  I  R  E  G  S  S  *  R  S  S  L  L  E  K  S  R  S  G  D  V  R  Q  L  P  E  V  V  E  C  F  R  K  H  V  Y  L  P  N  N  L :   *  F  S  K  *  K  Q  A  Y  G  P  Y  K  W  C  R  I  C  T  Y  L  *  R  *  R  W  R  L  D  A  C  R  R  C  S  M  E  :  N  V  C  *  Y  V  *  E  N  *  I  D  E  E  H  G  G  Y  R  I  S :   S  K  N  T  W  E  I  V  E  L  K  L  N  K  E  A  *  *  L  H  V  Q  I  P  T  G  L  S  E  *  V  F  L  F  L  P  F  A  F  F  N  Y  R  I  S  N  I  *  L  G  N  Y  L  E  V  Y  F  V  L  R  C  F  P  C  E  *  R  R  L  I  L  L  I  L  Y  L  Y  F  Y  L  Y  :  S  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63526" stop="63899"/>
                    <exon start="63974" stop="64155"/>
                    <exon start="64260" stop="64371"/>
                    <exon start="64552" stop="64613"/>
                    <exon start="64695" stop="64726"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMANMKASVHLPESIYSGLTAFFQSTKRYFISPNYLKRGKMSSETAKSANGLTETNNSGLNFNETELTLGLPGESRKQISGAKRGNSDGMELSLGSSTSGERRRDICEVNHSKNEISTGNKPPAKAQVIGWPPVRSYRKNVIEKCKYVKVAVDGAPYLRKVDLEMYDSYQKLLNALENMFTCLTICNSQSESKLMDLTNGVEYVPTYEDKDGDWMLVGDVPWKMFVDTCKRIRLMKSTEAIGLAPRTPGRSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63626" e_stop="64371"/>
            <exon e_start="64552" e_stop="64613"/>
            <exon e_start="64695" e_stop="64938"/>
            <exon e_start="66600" e_stop="66614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="63626" e_stop="64371" e_length="746"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64551" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64552" e_stop="64613" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64614" i_stop="64694" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64695" e_stop="64938" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64939" i_stop="66599" i_length="1661"/>
          </intron>
          <exon e_serial="4" e_score="0.733">
            <gDNA_exon_boundary e_start="66600" e_stop="66614" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63626" stop="64301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64303" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64330" stop="64371"/>
              <exon start="64552" stop="64613"/>
              <exon start="64695" stop="64938"/>
              <exon start="66600" stop="66614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTATCTAAAAAGGGGGAAAATGTCATCGGAGACAGCCAAATCAGCGAACGGTTTGACGGAAACAAATAATTCCGGCCTTAATTTCAATGAAACTGAGCTAACTCTCGGCTTACCCGGCGAATCGCGGAAGCAAATCTCCGGTGCAAAACGTGGAAATTCCGACGGTATGGAATTAAGCCTAGGAAGCTCAACTTCCGGTGAACGCCGCCGTGATATCTGCGAAGTTAATCACTCGAAAAACGAAATCTCTACCGGAAACAAACCTCCAGCAAAGTAAGTCATGTAGACACGTAATTTTTTACTCTCCCGAATTTATGCACAATTTTAATTGTGAATTATGATATTAGGGCACAAGTAATTGGATGGCCGCCGGTGAGATCATACAGAAAAAACGTGATAGAAAAGTGCAAATACGTGAAGGTAGCAGTTGACGGAGCTCCTTACTTGAGAAAAGTAGATCTGGAGATGTACGACAGTTACCAGAAGTTGTTGAATGCTTTAGAAAACATGTTTACTTGCCTAACAATCTGTAAGTATACTTTAACGTTTCATTTTTCTTTTTGCTCCTTTAATCAATTCCATCATATAATATAGATTTCGTCGATTTGTATGAACCGATTGATAATAATTCAGGTAATTCTCAAAGTGAAAGCAAGCTTATGGACCTTACAAATGGTGTAGAATATGTACCTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTTCCATGGAA : AATGTTTGTTGATACGTGTAAGAGAATTAGATTGATGAAGAGCACGGAGGCTATAGGATTAG : CTCCAAGAACACCTGGGAGATCGTCGAGTTGAAGCTAAATAAAGAAGCTTAATAACTGCATGTACAGATACCAACTGGCTTGAGTGAATAAGTTTTTTTATTTTTACCTTTTGCGTTCTTTAATTATAGGATAAGTAATATATAATTAGGCAATTACTTAGAAGTGTATTTTGTGCTACGATGCTTCCCGTGTGAGTGAAGACGATTGATTTTATTAATACTGTATTTGTATTTTTATTTGTAT : AGTAAAAAGAAAAAG</gDNA_template>
            <first_frame> T  I  *  K  G  G  K  C  H  R  R  Q  P  N  Q  R  T  V  *  R  K  Q  I  I  P  A  L  I  S  M  K  L  S  *  L  S  A  Y  P  A  N  R  G  S  K  S  P  V  Q  N  V  E  I  P  T  V  W  N  *  A  *  E  A  Q  L  P  V  N  A  A  V  I  S  A  K  L  I  T  R  K  T  K  S  L  P  E  T  N  L  Q  Q  S  K  S  C  R  H  V  I  F  Y  S  P  E  F  M  H  N  F  N  C  E  L  *  Y  *  G  T  S  N  W  M  A  A  G  E  I  I  Q  K  K  R  D  R  K  V  Q  I  R  E  G  S  S  *  R  S  S  L  L  E  K  S  R  S  G  D  V  R  Q  L  P  E  V  V  E  C  F  R  K  H  V  Y  L  P  N  N  L  *  V  Y  F  N  V  S  F  F  F  L  L  L  *  S  I  P  S  Y  N  I  D  F  V  D  L  Y  E  P  I  D  N  N  S  G  N  S  Q  S  E  S  K  L  M  D  L  T  N  G  V  E  Y  V  P  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  K :   M  F  V  D  T  C  K  R  I  R  L  M  K  S  T  E  A  I  G  L   : A  P  R  T  P  G  R  S  S  S  *  S  *  I  K  K  L  N  N  C  M  Y  R  Y  Q  L  A  *  V  N  K  F  F  Y  F  Y  L  L  R  S  L  I  I  G  *  V  I  Y  N  *  A  I  T  *  K  C  I  L  C  Y  D  A  S  R  V  S  E  D  D  *  F  Y  *  Y  C  I  C  I  F  I  C  I :   V  K  R  K   </first_frame>
            <second_frame>  L  S  K  K  G  E  N  V  I  G  D  S  Q  I  S  E  R  F  D  G  N  K  *  F  R  P  *  F  Q  *  N  *  A  N  S  R  L  T  R  R  I  A  E  A  N  L  R  C  K  T  W  K  F  R  R  Y  G  I  K  P  R  K  L  N  F  R  *  T  P  P  *  Y  L  R  S  *  S  L  E  K  R  N  L  Y  R  K  Q  T  S  S  K  V  S  H  V  D  T  *  F  F  T  L  P  N  L  C  T  I  L  I  V  N  Y  D  I  R  A  Q  V  I  G  W  P  P  V  R  S  Y  R  K  N  V  I  E  K  C  K  Y  V  K  V  A  V  D  G  A  P  Y  L  R  K  V  D  L  E  M  Y  D  S  Y  Q  K  L  L  N  A  L  E  N  M  F  T  C  L  T  I  C  K  Y  T  L  T  F  H  F  S  F  C  S  F  N  Q  F  H  H  I  I  *  I  S  S  I  C  M  N  R  L  I  I  I  Q  V  I  L  K  V  K  A  S  L  W  T  L  Q  M  V  *  N  M  Y  L  L  M  K  I  K  M  E  T  G  C  L  *  E  M  F  H  G   : K  C  L  L  I  R  V  R  E  L  D  *  *  R  A  R  R  L  *  D  *  :  L  Q  E  H  L  G  D  R  R  V  E  A  K  *  R  S  L  I  T  A  C  T  D  T  N  W  L  E  *  I  S  F  F  I  F  T  F  C  V  L  *  L  *  D  K  *  Y  I  I  R  Q  L  L  R  S  V  F  C  A  T  M  L  P  V  *  V  K  T  I  D  F  I  N  T  V  F  V  F  L  F  V   : *  *  K  E  K  </second_frame>
            <third_frame>   Y  L  K  R  G  K  M  S  S  E  T  A  K  S  A  N  G  L  T  E  T  N  N  S  G  L  N  F  N  E  T  E  L  T  L  G  L  P  G  E  S  R  K  Q  I  S  G  A  K  R  G  N  S  D  G  M  E  L  S  L  G  S  S  T  S  G  E  R  R  R  D  I  C  E  V  N  H  S  K  N  E  I  S  T  G  N  K  P  P  A  K  *  V  M  *  T  R  N  F  L  L  S  R  I  Y  A  Q  F  *  L  *  I  M  I  L  G  H  K  *  L  D  G  R  R  *  D  H  T  E  K  T  *  *  K  S  A  N  T  *  R  *  Q  L  T  E  L  L  T  *  E  K  *  I  W  R  C  T  T  V  T  R  S  C  *  M  L  *  K  T  C  L  L  A  *  Q  S  V  S  I  L  *  R  F  I  F  L  F  A  P  L  I  N  S  I  I  *  Y  R  F  R  R  F  V  *  T  D  *  *  *  F  R  *  F  S  K  *  K  Q  A  Y  G  P  Y  K  W  C  R  I  C  T  Y  L  *  R  *  R  W  R  L  D  A  C  R  R  C  S  M  E  :  N  V  C  *  Y  V  *  E  N  *  I  D  E  E  H  G  G  Y  R  I  S :   S  K  N  T  W  E  I  V  E  L  K  L  N  K  E  A  *  *  L  H  V  Q  I  P  T  G  L  S  E  *  V  F  L  F  L  P  F  A  F  F  N  Y  R  I  S  N  I  *  L  G  N  Y  L  E  V  Y  F  V  L  R  C  F  P  C  E  *  R  R  L  I  L  L  I  L  Y  L  Y  F  Y  L  Y  :  S  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63921" stop="64220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFTLPNLCTILIVNYDIRAQVIGWPPVRSYRKNVIEKCKYVKVAVDGAPYLRKVDLEMYDSYQKLLNALENMFTCLTICKYTLTFHFSFCSFNQFHHII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63628" stop="63903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLKRGKMSSETAKSANGLTETNNSGLNFNETELTLGLPGESRKQISGAKRGNSDGMELSLGSSTSGERRRDICEVNHSKNEISTGNKPPAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64199" stop="64371"/>
                    <exon start="64552" stop="64613"/>
                    <exon start="64695" stop="64726"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPSYNIDFVDLYEPIDNNSGNSQSESKLMDLTNGVEYVPTYEDKDGDWMLVGDVPWKMFVDTCKRIRLMKSTEAIGLAPRTPGRSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="67101" PGL_stop="68534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67101" e_stop="67328"/>
            <exon e_start="67996" e_stop="68110"/>
            <exon e_start="68185" e_stop="68534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.965"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="0.991"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="67101" e_stop="67328" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67329" i_stop="67995" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="67996" e_stop="68110" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68111" i_stop="68184" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="68185" e_stop="68534" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67101" stop="67328"/>
              <exon start="67996" stop="68110"/>
              <exon start="68185" stop="68534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAACCTTCATCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATAAAATCGCCAATTTCGTGTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG : ATTGGGCAGCATTAGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</gDNA_template>
            <first_frame> L  L  N  F  E  N  Q  N  L  C  S  P  S  V  N  L  H  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  S  V  R  H  F  C  L  L  C  P  P  *  K  I  K  S  P  I  S  C  T  L  S  A  I  F  V  Q  Y  S  *  K  :  I  G  Q  H  *  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  E  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  I  F  F  L  F  F  G  V  K  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F  L  K  L  F </first_frame>
            <second_frame>  F  S  I  L  K  I  K  I  C  A  L  H  P  S  T  F  I  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  *  N  R  Q  F  R  V  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  R  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  S  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  K  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  F  F  F  C  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  *  N  Y   </second_frame>
            <third_frame>   S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  T  L  S  A  L  K  N  K  I  A  N  F  V  Y  S  V  R  H  F  R  P  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  V  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  R  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  F  F  F  V  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F  K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67193" stop="67328"/>
                    <exon start="67996" stop="68110"/>
                    <exon start="68185" stop="68224"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSTLSALKNKIANFVYSVRHFRPIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68188" stop="68412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILSDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMKNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69575" PGL_stop="70947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69575" e_stop="69692"/>
            <exon e_start="69829" e_stop="70947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69575" e_stop="69692" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69693" i_stop="69828" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69829" e_stop="70947" e_length="1119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69575" stop="69692"/>
              <exon start="69829" stop="70420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370831" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69600" stop="69692"/>
              <exon start="69829" stop="70218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69600" stop="69692"/>
              <exon start="69829" stop="70087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69602" stop="69692"/>
              <exon start="69829" stop="70263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69602" stop="69692"/>
              <exon start="69829" stop="70195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70348" stop="70852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70719" stop="70947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCACAATTATTACTTCTCTTACAAATCTTTGACTCTTTTTCTTCAACCAAAAAAGGAAAAAAAAATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG : AGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGAACCGAGGGCTAACACCTGAGGTGGTGAATGCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAACTTTCTTGTGGGGCATAATAAGGTTGTTGAAGGTGATCCAGCTACATTTCCTAAGGCGATTCACTATACACTTGGTGGACCCTGGTTTGAAGCTTGGAAAGATTGTGAATTTGGTGATTTGTGGTTGAAGGAATTGGAAGAGTCCAAGAAGGCAAAGGAGAAGGTGGTTTGAGCCAATGTAGACAACATTGTTTGAATCGCAGGGTGTATGTTAAGGTAATCAGCTGGTGGTTATTGTTGTAAGTGTGTTCAGTGACCAGAAGGTTATGCCATTTATTTAACCTTCCACATTATTTATTTTGTATTTTCTCACTTCGAGGTTCTTTGTAATTCAAGCCAGTATTTTATTCTGTGTTGCTATATCTGATAAGCAAACTTTTAAGTCATCTAGAGTTGTATTATTATTTTAATAGATGTCTGTTTGTATAGAAGGTAGTAGATTGTGTGATGATCTACAACTTTATTATTGATATCTGCTCTGGATTTGTAATTTGGTTTCATTAATGAGAAACGATGGAGGTTTGGTT</gDNA_template>
            <first_frame> P  S  Q  L  L  L  L  L  Q  I  F  D  S  F  S  S  T  K  K  G  K  K  N  I  V  F  S  F  Q  S  K  L  D  L  L  S  L  *  K   : E  T  V  M  S  K  D  L  H  S  D  V  E  K  S  E  T  P  L  K  P  F  K  I  F  V  G  Y  D  P  R  E  D  V  A  Y  E  V  C  R  Y  S  L  L  K  R  S  S  I  P  L  E  I  T  P  I  K  Q  C  E  L  R  E  Q  G  L  Y  W  R  E  R  G  K  L  E  S  T  E  F  S  F  S  R  F  L  T  P  Y  L  A  D  Y  E  G  W  A  M  F  V  D  C  D  F  L  Y  L  G  D  I  K  E  L  R  D  I  V  D  D  K  Y  A  L  M  C  V  Q  H  D  Y  T  P  K  E  T  T  K  M  D  G  A  V  Q  T  V  Y  P  R  K  N  W  S  S  M  V  L  Y  N  C  G  H  P  K  N  R  G  L  T  P  E  V  V  N  A  E  S  G  A  F  L  H  R  F  M  W  L  E  D  E  E  I  G  E  V  P  F  V  W  N  F  L  V  G  H  N  K  V  V  E  G  D  P  A  T  F  P  K  A  I  H  Y  T  L  G  G  P  W  F  E  A  W  K  D  C  E  F  G  D  L  W  L  K  E  L  E  E  S  K  K  A  K  E  K  V  V  *  A  N  V  D  N  I  V  *  I  A  G  C  M  L  R  *  S  A  G  G  Y  C  C  K  C  V  Q  *  P  E  G  Y  A  I  Y  L  T  F  H  I  I  Y  F  V  F  S  H  F  E  V  L  C  N  S  S  Q  Y  F  I  L  C  C  Y  I  *  *  A  N  F  *  V  I  *  S  C  I  I  I  L  I  D  V  C  L  Y  R  R  *  *  I  V  *  *  S  T  T  L  L  L  I  S  A  L  D  L  *  F  G  F  I  N  E  K  R  W  R  F  G  </first_frame>
            <second_frame>  P  H  N  Y  Y  F  S  Y  K  S  L  T  L  F  L  Q  P  K  K  E  K  K  I  L  F  S  L  F  S  P  N  *  I  C  Y  R  S  K  K  :  R  L  *  C  R  K  I  C  I  Q  M  *  R  N  L  R  P  L  *  S  H  S  R  F  S  *  A  M  I  H  E  K  M  L  R  M  R  F  V  V  I  P  F  *  K  D  H  Q  F  H  L  R  *  H  P  L  S  N  V  S  *  G  S  R  V  C  I  G  V  K  E  G  N  W  K  V  L  S  F  H  F  R  D  F  *  R  L  T  W  Q  I  M  R  V  G  L  C  L  L  I  V  I  S  C  T  *  G  I  L  K  N  *  G  I  L  S  M  I  N  M  L  *  C  V  Y  N  M  I  I  L  L  K  R  L  R  K  W  M  V  Q  C  K  R  F  I  L  G  R  I  G  R  P  W  F  F  I  T  V  D  I  Q  R  T  E  G  *  H  L  R  W  *  M  L  S  P  G  H  F  F  I  A  S  C  G  W  R  M  R  R  L  G  R  F  H  L  C  G  T  F  L  W  G  I  I  R  L  L  K  V  I  Q  L  H  F  L  R  R  F  T  I  H  L  V  D  P  G  L  K  L  G  K  I  V  N  L  V  I  C  G  *  R  N  W  K  S  P  R  R  Q  R  R  R  W  F  E  P  M  *  T  T  L  F  E  S  Q  G  V  C  *  G  N  Q  L  V  V  I  V  V  S  V  F  S  D  Q  K  V  M  P  F  I  *  P  S  T  L  F  I  L  Y  F  L  T  S  R  F  F  V  I  Q  A  S  I  L  F  C  V  A  I  S  D  K  Q  T  F  K  S  S  R  V  V  L  L  F  *  *  M  S  V  C  I  E  G  S  R  L  C  D  D  L  Q  L  Y  Y  *  Y  L  L  W  I  C  N  L  V  S  L  M  R  N  D  G  G  L  V </second_frame>
            <third_frame>   L  T  I  I  T  S  L  T  N  L  *  L  F  F  F  N  Q  K  R  K  K  K  Y  C  F  L  F  S  V  Q  T  R  S  V  I  A  L  K  R :   D  C  N  V  E  R  F  A  F  R  C  R  E  I  *  D  P  F  E  A  I  Q  D  F  R  R  L  *  S  T  R  R  C  C  V  *  G  L  S  L  F  P  F  E  K  I  I  N  S  T  *  D  N  T  H  *  A  M  *  V  E  G  A  G  S  V  L  A  *  K  R  E  T  G  K  Y  *  V  F  I  F  A  I  F  D  A  L  L  G  R  L  *  G  L  G  Y  V  C  *  L  *  F  L  V  L  R  G  Y  *  R  I  E  G  Y  C  R  *  *  I  C  F  N  V  C  T  T  *  L  Y  S  *  R  D  Y  E  N  G  W  C  S  A  N  G  L  S  *  E  E  L  V  V  H  G  S  L  *  L  W  T  S  K  E  P  R  A  N  T  *  G  G  E  C  *  V  R  G  I  S  S  S  L  H  V  V  G  G  *  G  D  W  G  G  S  I  C  V  E  L  S  C  G  A  *  *  G  C  *  R  *  S  S  Y  I  S  *  G  D  S  L  Y  T  W  W  T  L  V  *  S  L  E  R  L  *  I  W  *  F  V  V  E  G  I  G  R  V  Q  E  G  K  G  E  G  G  L  S  Q  C  R  Q  H  C  L  N  R  R  V  Y  V  K  V  I  S  W  W  L  L  L  *  V  C  S  V  T  R  R  L  C  H  L  F  N  L  P  H  Y  L  F  C  I  F  S  L  R  G  S  L  *  F  K  P  V  F  Y  S  V  L  L  Y  L  I  S  K  L  L  S  H  L  E  L  Y  Y  Y  F  N  R  C  L  F  V  *  K  V  V  D  C  V  M  I  Y  N  F  I  I  D  I  C  S  G  F  V  I  W  F  H  *  *  E  T  M  E  V  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69689" stop="69692"/>
                    <exon start="69829" stop="70592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KETVMSKDLHSDVEKSETPLKPFKIFVGYDPREDVAYEVCRYSLLKRSSIPLEITPIKQCELREQGLYWRERGKLESTEFSFSRFLTPYLADYEGWAMFVDCDFLYLGDIKELRDIVDDKYALMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNRGLTPEVVNAESGAFLHRFMWLEDEEIGEVPFVWNFLVGHNKVVEGDPATFPKAIHYTLGGPWFEAWKDCEFGDLWLKELEESKKAKEKVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69642" e_stop="69692"/>
            <exon e_start="69819" e_stop="70947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="69642" e_stop="69692" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69693" i_stop="69818" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="69819" e_stop="70947" e_length="1129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69642" stop="69692"/>
              <exon start="69819" stop="70383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69642" stop="69692"/>
              <exon start="69819" stop="70314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70348" stop="70852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70719" stop="70947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTGTTTTCTCTTTTCAGTCCAAACTAGATCTGTTATCGCTCTAAAAAG : TGATTTGCAGAGACTGTAATGTCGAAAGATTTGCATTCAGATGTAGAGAAATCTGAGACCCCTTTGAAGCCATTCAAGATTTTCGTAGGCTATGATCCACGAGAAGATGTTGCGTATGAGGTTTGTCGTTATTCCCTTTTGAAAAGATCATCAATTCCACTTGAGATAACACCCATTAAGCAATGTGAGTTGAGGGAGCAGGGTCTGTATTGGCGTGAAAGAGGGAAACTGGAAAGTACTGAGTTTTCATTTTCGCGATTTTTGACGCCTTACTTGGCAGATTATGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCTTGTACTTAGGGGATATTAAAGAATTGAGGGATATTGTCGATGATAAATATGCTTTAATGTGTGTACAACATGATTATACTCCTAAAGAGACTACGAAAATGGATGGTGCAGTGCAAACGGTTTATCCTAGGAAGAATTGGTCGTCCATGGTTCTTTATAACTGTGGACATCCAAAGAACCGAGGGCTAACACCTGAGGTGGTGAATGCTGAGTCCGGGGCATTTCTTCATCGCTTCATGTGGTTGGAGGATGAGGAGATTGGGGAGGTTCCATTTGTGTGGAACTTTCTTGTGGGGCATAATAAGGTTGTTGAAGGTGATCCAGCTACATTTCCTAAGGCGATTCACTATACACTTGGTGGACCCTGGTTTGAAGCTTGGAAAGATTGTGAATTTGGTGATTTGTGGTTGAAGGAATTGGAAGAGTCCAAGAAGGCAAAGGAGAAGGTGGTTTGAGCCAATGTAGACAACATTGTTTGAATCGCAGGGTGTATGTTAAGGTAATCAGCTGGTGGTTATTGTTGTAAGTGTGTTCAGTGACCAGAAGGTTATGCCATTTATTTAACCTTCCACATTATTTATTTTGTATTTTCTCACTTCGAGGTTCTTTGTAATTCAAGCCAGTATTTTATTCTGTGTTGCTATATCTGATAAGCAAACTTTTAAGTCATCTAGAGTTGTATTATTATTTTAATAGATGTCTGTTTGTATAGAAGGTAGTAGATTGTGTGATGATCTACAACTTTATTATTGATATCTGCTCTGGATTTGTAATTTGGTTTCATTAATGAGAAACGATGGAGGTTTGGTT</gDNA_template>
            <first_frame> I  L  F  S  L  F  S  P  N  *  I  C  Y  R  S  K  K  :  *  F  A  E  T  V  M  S  K  D  L  H  S  D  V  E  K  S  E  T  P  L  K  P  F  K  I  F  V  G  Y  D  P  R  E  D  V  A  Y  E  V  C  R  Y  S  L  L  K  R  S  S  I  P  L  E  I  T  P  I  K  Q  C  E  L  R  E  Q  G  L  Y  W  R  E  R  G  K  L  E  S  T  E  F  S  F  S  R  F  L  T  P  Y  L  A  D  Y  E  G  W  A  M  F  V  D  C  D  F  L  Y  L  G  D  I  K  E  L  R  D  I  V  D  D  K  Y  A  L  M  C  V  Q  H  D  Y  T  P  K  E  T  T  K  M  D  G  A  V  Q  T  V  Y  P  R  K  N  W  S  S  M  V  L  Y  N  C  G  H  P  K  N  R  G  L  T  P  E  V  V  N  A  E  S  G  A  F  L  H  R  F  M  W  L  E  D  E  E  I  G  E  V  P  F  V  W  N  F  L  V  G  H  N  K  V  V  E  G  D  P  A  T  F  P  K  A  I  H  Y  T  L  G  G  P  W  F  E  A  W  K  D  C  E  F  G  D  L  W  L  K  E  L  E  E  S  K  K  A  K  E  K  V  V  *  A  N  V  D  N  I  V  *  I  A  G  C  M  L  R  *  S  A  G  G  Y  C  C  K  C  V  Q  *  P  E  G  Y  A  I  Y  L  T  F  H  I  I  Y  F  V  F  S  H  F  E  V  L  C  N  S  S  Q  Y  F  I  L  C  C  Y  I  *  *  A  N  F  *  V  I  *  S  C  I  I  I  L  I  D  V  C  L  Y  R  R  *  *  I  V  *  *  S  T  T  L  L  L  I  S  A  L  D  L  *  F  G  F  I  N  E  K  R  W  R  F  G  </first_frame>
            <second_frame>  Y  C  F  L  F  S  V  Q  T  R  S  V  I  A  L  K  S :   D  L  Q  R  L  *  C  R  K  I  C  I  Q  M  *  R  N  L  R  P  L  *  S  H  S  R  F  S  *  A  M  I  H  E  K  M  L  R  M  R  F  V  V  I  P  F  *  K  D  H  Q  F  H  L  R  *  H  P  L  S  N  V  S  *  G  S  R  V  C  I  G  V  K  E  G  N  W  K  V  L  S  F  H  F  R  D  F  *  R  L  T  W  Q  I  M  R  V  G  L  C  L  L  I  V  I  S  C  T  *  G  I  L  K  N  *  G  I  L  S  M  I  N  M  L  *  C  V  Y  N  M  I  I  L  L  K  R  L  R  K  W  M  V  Q  C  K  R  F  I  L  G  R  I  G  R  P  W  F  F  I  T  V  D  I  Q  R  T  E  G  *  H  L  R  W  *  M  L  S  P  G  H  F  F  I  A  S  C  G  W  R  M  R  R  L  G  R  F  H  L  C  G  T  F  L  W  G  I  I  R  L  L  K  V  I  Q  L  H  F  L  R  R  F  T  I  H  L  V  D  P  G  L  K  L  G  K  I  V  N  L  V  I  C  G  *  R  N  W  K  S  P  R  R  Q  R  R  R  W  F  E  P  M  *  T  T  L  F  E  S  Q  G  V  C  *  G  N  Q  L  V  V  I  V  V  S  V  F  S  D  Q  K  V  M  P  F  I  *  P  S  T  L  F  I  L  Y  F  L  T  S  R  F  F  V  I  Q  A  S  I  L  F  C  V  A  I  S  D  K  Q  T  F  K  S  S  R  V  V  L  L  F  *  *  M  S  V  C  I  E  G  S  R  L  C  D  D  L  Q  L  Y  Y  *  Y  L  L  W  I  C  N  L  V  S  L  M  R  N  D  G  G  L  V </second_frame>
            <third_frame>   I  V  F  S  F  Q  S  K  L  D  L  L  S  L  *  K   : V  I  C  R  D  C  N  V  E  R  F  A  F  R  C  R  E  I  *  D  P  F  E  A  I  Q  D  F  R  R  L  *  S  T  R  R  C  C  V  *  G  L  S  L  F  P  F  E  K  I  I  N  S  T  *  D  N  T  H  *  A  M  *  V  E  G  A  G  S  V  L  A  *  K  R  E  T  G  K  Y  *  V  F  I  F  A  I  F  D  A  L  L  G  R  L  *  G  L  G  Y  V  C  *  L  *  F  L  V  L  R  G  Y  *  R  I  E  G  Y  C  R  *  *  I  C  F  N  V  C  T  T  *  L  Y  S  *  R  D  Y  E  N  G  W  C  S  A  N  G  L  S  *  E  E  L  V  V  H  G  S  L  *  L  W  T  S  K  E  P  R  A  N  T  *  G  G  E  C  *  V  R  G  I  S  S  S  L  H  V  V  G  G  *  G  D  W  G  G  S  I  C  V  E  L  S  C  G  A  *  *  G  C  *  R  *  S  S  Y  I  S  *  G  D  S  L  Y  T  W  W  T  L  V  *  S  L  E  R  L  *  I  W  *  F  V  V  E  G  I  G  R  V  Q  E  G  K  G  E  G  G  L  S  Q  C  R  Q  H  C  L  N  R  R  V  Y  V  K  V  I  S  W  W  L  L  L  *  V  C  S  V  T  R  R  L  C  H  L  F  N  L  P  H  Y  L  F  C  I  F  S  L  R  G  S  L  *  F  K  P  V  F  Y  S  V  L  L  Y  L  I  S  K  L  L  S  H  L  E  L  Y  Y  Y  F  N  R  C  L  F  V  *  K  V  V  D  C  V  M  I  Y  N  F  I  I  D  I  C  S  G  F  V  I  W  F  H  *  *  E  T  M  E  V  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69822" stop="70592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAETVMSKDLHSDVEKSETPLKPFKIFVGYDPREDVAYEVCRYSLLKRSSIPLEITPIKQCELREQGLYWRERGKLESTEFSFSRFLTPYLADYEGWAMFVDCDFLYLGDIKELRDIVDDKYALMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNRGLTPEVVNAESGAFLHRFMWLEDEEIGEVPFVWNFLVGHNKVVEGDPATFPKAIHYTLGGPWFEAWKDCEFGDLWLKELEESKKAKEKVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="74097" PGL_stop="76229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74097" e_stop="74253"/>
            <exon e_start="74931" e_stop="75196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.808" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74097" e_stop="74253" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="74931" e_stop="75196" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74097" stop="74253"/>
              <exon start="74931" stop="75196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74125" stop="74253"/>
              <exon start="74931" stop="75161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74149" stop="74253"/>
              <exon start="74931" stop="75158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74195" stop="74253"/>
              <exon start="74931" stop="75126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTGTCAAGCTATAGAGCAAGAGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTG : TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAAGTCATTTTCTATTGAATTTCAACGTACAACATTTTATG</gDNA_template>
            <first_frame> I  L  S  S  Y  R  A  R  A  L  S  L  S  V  F  S  *  S  I  R  E  E  V  E  K  W  M  H  H  N  I  K  R  C  L  M  L  S  M  S  N  V  D  A  R  K  K  D  A  F  M  L   : V  C  S  Q  R  V  A  A  S  V  A  M  R  P  A  S  A  V  W  T  C  S  A  A  V  L  D  V  H  P  R  H  A  N  P  V  L  L  C  *  Q  H  I  T  N  S  L  F  S  H  T  M  S  L  L  L  P  Y  L  P  L  Y  V  *  K  L  *  S  *  I  N  L  C  L  L  L  S  H  F  L  L  N  F  N  V  Q  H  F  M </first_frame>
            <second_frame>  S  C  Q  A  I  E  Q  E  L  S  L  S  L  S  L  V  E  V  L  E  K  K  *  K  N  G  C  T  T  I  S  R  D  V  L  C  *  A  C  Q  T  S  T  R  G  K  R  M  P  L  C  L  :  C  V  R  N  V  L  L  L  L  L  L  *  D  L  R  V  L  S  G  H  A  L  L  L  Y  L  M  S  I  L  D  M  P  T  L  C  Y  Y  V  S  N  I  L  Q  I  P  C  F  L  T  L  C  L  F  C  Y  L  T  S  H  S  M  F  E  N  C  E  V  E  *  T  C  A  C  F  *  V  I  F  Y  *  I  S  T  Y  N  I  L   </second_frame>
            <third_frame>   L  V  K  L  *  S  K  S  S  L  S  L  C  L  *  L  K  Y  *  R  R  S  R  K  M  D  A  P  Q  Y  Q  E  M  S  Y  V  E  H  V  K  R  R  R  E  E  K  G  C  L  Y  A  C :   V  F  A  T  C  C  C  F  C  C  Y  E  T  C  E  C  C  L  D  M  L  C  C  C  T  *  C  P  S  *  T  C  Q  P  C  V  T  M  L  A  T  Y  Y  K  F  P  V  F  S  H  Y  V  S  F  V  T  L  P  P  T  L  C  L  K  T  V  K  L  N  K  L  V  L  A  F  K  S  F  S  I  E  F  Q  R  T  T  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74148" stop="74253"/>
                    <exon start="74931" stop="75049"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIREEVEKWMHHNIKRCLMLSMSNVDARKKDAFMLVCSQRVAASVAMRPASAVWTCSAAVLDVHPRHANPVLLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74120" e_stop="74253"/>
            <exon e_start="74931" e_stop="75158"/>
            <exon e_start="75892" e_stop="75943"/>
            <exon e_start="76185" e_stop="76229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.346" acc_prob="0.000" e_score="0.615"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74120" e_stop="74253" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="74254" i_stop="74930" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74931" e_stop="75158" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75159" i_stop="75891" i_length="733"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="75892" e_stop="75943" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.346" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75944" i_stop="76184" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="0.533">
            <gDNA_exon_boundary e_start="76185" e_stop="76229" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74120" stop="74253"/>
              <exon start="74931" stop="75158"/>
              <exon start="75892" stop="75943"/>
              <exon start="76185" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74149" stop="74253"/>
              <exon start="74931" stop="75158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74195" stop="74253"/>
              <exon start="74931" stop="75126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTCTCTCTCTCTCTGTCTTTAGTTGAAGTATTAGAGAAGAAGTAGAAAAATGGATGCACCACAATATCAAGAGATGTCTTATGTTGAGCATGTCAAACGTCGACGCGAGGAAAAAGGATGCCTTTATGCTTG : TGTGTTCGCAACGTGTTGCTGCTTCTGTTGCTATGAGACCTGCGAGTGCTGTCTGGACATGCTCTGCTGCTGTACTTGATGTCCATCCTAGACATGCCAACCCTGTGTTACTATGTTAGCAACATATTACAAATTCCCTGTTTTCTCACACTATGTCTCTTTTGTTACCTTACCTCCCACTCTATGTTTGAAAACTGTGAAGTTGAATAAACTTGTGCTTGCTTTTAA : TGGAACAAAATAAAAAAATTGGAGAACATTTCTCTGAAGCATCAACTGATGG : CTTATGCCATGCATCATAATAAGCTTCTAAGTTCTTGTTGATCGT</gDNA_template>
            <first_frame> S  S  L  S  L  C  L  *  L  K  Y  *  R  R  S  R  K  M  D  A  P  Q  Y  Q  E  M  S  Y  V  E  H  V  K  R  R  R  E  E  K  G  C  L  Y  A  C :   V  F  A  T  C  C  C  F  C  C  Y  E  T  C  E  C  C  L  D  M  L  C  C  C  T  *  C  P  S  *  T  C  Q  P  C  V  T  M  L  A  T  Y  Y  K  F  P  V  F  S  H  Y  V  S  F  V  T  L  P  P  T  L  C  L  K  T  V  K  L  N  K  L  V  L  A  F  N :   G  T  K  *  K  N  W  R  T  F  L  *  S  I  N  *  W  :  L  M  P  C  I  I  I  S  F  *  V  L  V  D  R </first_frame>
            <second_frame>  A  L  S  L  S  V  F  S  *  S  I  R  E  E  V  E  K  W  M  H  H  N  I  K  R  C  L  M  L  S  M  S  N  V  D  A  R  K  K  D  A  F  M  L   : V  C  S  Q  R  V  A  A  S  V  A  M  R  P  A  S  A  V  W  T  C  S  A  A  V  L  D  V  H  P  R  H  A  N  P  V  L  L  C  *  Q  H  I  T  N  S  L  F  S  H  T  M  S  L  L  L  P  Y  L  P  L  Y  V  *  K  L  *  S  *  I  N  L  C  L  L  L   : M  E  Q  N  K  K  I  G  E  H  F  S  E  A  S  T  D  G :   L  C  H  A  S  *  *  A  S  K  F  L  L  I   </second_frame>
            <third_frame>   L  S  L  S  L  S  L  V  E  V  L  E  K  K  *  K  N  G  C  T  T  I  S  R  D  V  L  C  *  A  C  Q  T  S  T  R  G  K  R  M  P  L  C  L  :  C  V  R  N  V  L  L  L  L  L  L  *  D  L  R  V  L  S  G  H  A  L  L  L  Y  L  M  S  I  L  D  M  P  T  L  C  Y  Y  V  S  N  I  L  Q  I  P  C  F  L  T  L  C  L  F  C  Y  L  T  S  H  S  M  F  E  N  C  E  V  E  *  T  C  A  C  F  *  :  W  N  K  I  K  K  L  E  N  I  S  L  K  H  Q  L  M   : A  Y  A  M  H  H  N  K  L  L  S  S  C  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74148" stop="74253"/>
                    <exon start="74931" stop="75049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIREEVEKWMHHNIKRCLMLSMSNVDARKKDAFMLVCSQRVAASVAMRPASAVWTCSAAVLDVHPRHANPVLLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79029" PGL_stop="75531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79029" e_stop="78724"/>
            <exon e_start="77889" e_stop="77504"/>
            <exon e_start="77375" e_stop="77296"/>
            <exon e_start="77216" e_stop="77165"/>
            <exon e_start="77085" e_stop="77044"/>
            <exon e_start="76973" e_stop="76895"/>
            <exon e_start="76817" e_stop="76786"/>
            <exon e_start="76706" e_stop="76638"/>
            <exon e_start="76392" e_stop="76318"/>
            <exon e_start="76235" e_stop="76119"/>
            <exon e_start="76035" e_stop="75985"/>
            <exon e_start="75881" e_stop="75531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.454" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.545" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79029" e_stop="78724" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78723" i_stop="77890" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77889" e_stop="77504" e_length="386"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="77503" i_stop="77376" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77375" e_stop="77296" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.652">
            <gDNA_intron_boundary i_start="77295" i_stop="77217" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77216" e_stop="77165" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77164" i_stop="77086" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77085" e_stop="77044" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="77043" i_stop="76974" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76973" e_stop="76895" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.893" acc_prob="0.738">
            <gDNA_intron_boundary i_start="76894" i_stop="76818" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76817" e_stop="76786" e_length="32"/>
          </exon>
          <intron i_serial="7" don_prob="0.454" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76785" i_stop="76707" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76706" e_stop="76638" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.870" acc_prob="0.545">
            <gDNA_intron_boundary i_start="76637" i_stop="76393" i_length="245"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76392" e_stop="76318" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="76317" i_stop="76236" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76235" e_stop="76119" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76118" i_stop="76036" i_length="83"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="76035" e_stop="75985" e_length="51"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75984" i_stop="75882" i_length="103"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="75881" e_stop="75531" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79029" stop="78724"/>
              <exon start="77889" stop="77745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79026" stop="78724"/>
              <exon start="77889" stop="77709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79024" stop="78809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79018" stop="78724"/>
              <exon start="77889" stop="77712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79018" stop="78724"/>
              <exon start="77889" stop="77794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79017" stop="78724"/>
              <exon start="77889" stop="77673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79016" stop="78724"/>
              <exon start="77889" stop="77663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79015" stop="78724"/>
              <exon start="77889" stop="77577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79000" stop="78724"/>
              <exon start="77889" stop="77731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78997" stop="78724"/>
              <exon start="77889" stop="77737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78984" stop="78724"/>
              <exon start="77889" stop="77576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78983" stop="78724"/>
              <exon start="77889" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78979" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78978" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78978" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78977" stop="78724"/>
              <exon start="77889" stop="77674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78976" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78976" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78974" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78972" stop="78724"/>
              <exon start="77889" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77866" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76638"/>
              <exon start="76392" stop="76318"/>
              <exon start="76235" stop="76123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76638"/>
              <exon start="76392" stop="76318"/>
              <exon start="76235" stop="76161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77790" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77762" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77736" stop="77504"/>
              <exon start="77375" stop="77296"/>
              <exon start="77216" stop="77165"/>
              <exon start="77085" stop="77044"/>
              <exon start="76973" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76638"/>
              <exon start="76392" stop="76318"/>
              <exon start="76235" stop="76119"/>
              <exon start="76035" stop="75989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76966" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76638"/>
              <exon start="76392" stop="76318"/>
              <exon start="76235" stop="76119"/>
              <exon start="76035" stop="75985"/>
              <exon start="75881" stop="75531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76902" stop="76895"/>
              <exon start="76817" stop="76786"/>
              <exon start="76706" stop="76638"/>
              <exon start="76392" stop="76318"/>
              <exon start="76235" stop="76119"/>
              <exon start="76035" stop="75985"/>
              <exon start="75881" stop="75573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76196" stop="76119"/>
              <exon start="76035" stop="75985"/>
              <exon start="75881" stop="75531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317234" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75875" stop="75573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281247" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGCTGCAACACAAACACTTGCTGAGAACTCTCTCTCACTGTGTGCATGTGAAAGAGAGAGAGAGCCGACAATGGCGGGATTGAATATATTATCTCAGACTCCGTCGCCATGGCAGCTGTCAGCTTCATCCACATCATCATCAATATCATATTCTTCAAGATTTCCACATTTTTATGATTTTAATAATAATTACAATTGCGGCGATTCCAAATGCTCGACAAATTTTCCCCTTTCTGGAAACCCAAGACCAAAGCGTCCAACTTTATCCTCTCAAATGCAGCCTCACTTCTCCAATTCATCAG : GCAGTGAATGTTCATGGATGCAAGATAAATCCGCTTCTTGTGATAATTTTTCCCCTAACGGAAGGAAGCAAGGTGCATTGAATGCTGCGTCTTCAAAAGAACGAGCACTAGTTTCTTCTGTGGACGATCTTTATGACTTCATATGCTCAGGCCCACTCATCAGTAAGATTGGTCTGACACCAGAAAAGGTGGCCGAGTCCATTGACGAGTGGATAGAGTATGGATTACGGCTTTGTAGATTGTTTCAACTCAATCAGTTGTCTCTCAACGAGGCCCAAAAAATTCGAATCTACCACTACTATATTCCAGTCTTCTTGTGGTGTGAACAAGAAATTTCGCAGCATAGTTCTAAGTTCAAAGAAGAAGAAGAAATCCCTCCATTGGTG : ATTGGCTTCAGTGCGCCTCAAGGATGTGGAAAAACAACACTAGTATTCGCATTAGAATATCTTTTTAAAATCACAGGGAG : GAAAGCTGCGACAGTATCCATTGATGATTTTTACTTAACAGCGGAAGAACAG : GCAAAACTAAGAGACAGCAACCCAGGGAACTTGCTTTTGGAG : TTTCGTGGAAATGCTGGAAGCCATGATCTTCCATTTTCTGTTGAGACTCTGACAGCACTAAGTAAATTGACAAAAGAAG : GTGTGAAGGTGAAGCTTCCAAGATATGATAAA : TCTGCTTACAGTGGTAGAGGTGACAGAGCTGATCCCTCCGAATGGCCAGAGGTTGAAGGACCTCTACCG : GTAATTCTGTTTGAAGGATGGATGCTTGGTTTCAAACCCCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAG : CTAGAGACGATCAACAAGAACTTAGAAGCTTATTATGATGCATGGCATAAGTATGTCAAATCATGGATTGTCATCAAAATTCAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAG : GCGGAGATCGCAATGAGAGCTGATGGGAAGCCTGGAATGTCTGATGAGGAG : GTGAAGGACTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACCTTCCCACACTGTACTCAGAAGGACCTTCTGGCTCAGATCCAAAGCATGTTCTTCTCATTGATATTGACGAAGGGAGAAATCCCATCCTCGGTTGCTAAGGTAAATCTGCAGTAATGAAGTTACTTTTGATCCTTGATAGATTATTATGCAAAGATCACAATAATCTTTGCAAGCATCATTTCCTTCTAAGAATCTCTTCAATTGTACATTCAAATATACATTTGTAAATTAAGTCACATGTGATGGTAAAATGTTTGAACAAAATTTTGCTCGAGTTATCCTTGATTGATTTTTGTGCAAAGATT</gDNA_template>
            <first_frame> K  K  L  Q  H  K  H  L  L  R  T  L  S  H  C  V  H  V  K  E  R  E  S  R  Q  W  R  D  *  I  Y  Y  L  R  L  R  R  H  G  S  C  Q  L  H  P  H  H  H  Q  Y  H  I  L  Q  D  F  H  I  F  M  I  L  I  I  I  T  I  A  A  I  P  N  A  R  Q  I  F  P  F  L  E  T  Q  D  Q  S  V  Q  L  Y  P  L  K  C  S  L  T  S  P  I  H  Q  :  A  V  N  V  H  G  C  K  I  N  P  L  L  V  I  I  F  P  L  T  E  G  S  K  V  H  *  M  L  R  L  Q  K  N  E  H  *  F  L  L  W  T  I  F  M  T  S  Y  A  Q  A  H  S  S  V  R  L  V  *  H  Q  K  R  W  P  S  P  L  T  S  G  *  S  M  D  Y  G  F  V  D  C  F  N  S  I  S  C  L  S  T  R  P  K  K  F  E  S  T  T  T  I  F  Q  S  S  C  G  V  N  K  K  F  R  S  I  V  L  S  S  K  K  K  K  K  S  L  H  W  * :   L  A  S  V  R  L  K  D  V  E  K  Q  H  *  Y  S  H  *  N  I  F  L  K  S  Q  G   : G  K  L  R  Q  Y  P  L  M  I  F  T  *  Q  R  K  N  R :   Q  N  *  E  T  A  T  Q  G  T  C  F  W  S :   F  V  E  M  L  E  A  M  I  F  H  F  L  L  R  L  *  Q  H  *  V  N  *  Q  K  K  :  V  *  R  *  S  F  Q  D  M  I  N :   L  L  T  V  V  E  V  T  E  L  I  P  P  N  G  Q  R  L  K  D  L  Y  R :   *  F  C  L  K  D  G  C  L  V  S  N  P  F  H  L  K  L  S  K  L  L  I  H  S :   *  R  R  S  T  R  T  *  K  L  I  M  M  H  G  I  S  M  S  N  H  G  L  S  S  K  F  K  I  L  V  M  S  T  N  G  V  C  R :   R  R  S  Q  *  E  L  M  G  S  L  E  C  L  M  R  R :   *  R  T  L  Y  P  A  T  C  Q  H  T  R  L  T  F  P  H  C  T  Q  K  D  L  L  A  Q  I  Q  S  M  F  F  S  L  I  L  T  K  G  E  I  P  S  S  V  A  K  V  N  L  Q  *  *  S  Y  F  *  S  L  I  D  Y  Y  A  K  I  T  I  I  F  A  S  I  I  S  F  *  E  S  L  Q  L  Y  I  Q  I  Y  I  C  K  L  S  H  M  *  W  *  N  V  *  T  K  F  C  S  S  Y  P  *  L  I  F  V  Q  R   </first_frame>
            <second_frame>  K  S  C  N  T  N  T  C  *  E  L  S  L  T  V  C  M  *  K  R  E  R  A  D  N  G  G  I  E  Y  I  I  S  D  S  V  A  M  A  A  V  S  F  I  H  I  I  I  N  I  I  F  F  K  I  S  T  F  L  *  F  *  *  *  L  Q  L  R  R  F  Q  M  L  D  K  F  S  P  F  W  K  P  K  T  K  A  S  N  F  I  L  S  N  A  A  S  L  L  Q  F  I  R :   Q  *  M  F  M  D  A  R  *  I  R  F  L  *  *  F  F  P  *  R  K  E  A  R  C  I  E  C  C  V  F  K  R  T  S  T  S  F  F  C  G  R  S  L  *  L  H  M  L  R  P  T  H  Q  *  D  W  S  D  T  R  K  G  G  R  V  H  *  R  V  D  R  V  W  I  T  A  L  *  I  V  S  T  Q  S  V  V  S  Q  R  G  P  K  N  S  N  L  P  L  L  Y  S  S  L  L  V  V  *  T  R  N  F  A  A  *  F  *  V  Q  R  R  R  R  N  P  S  I  G   : D  W  L  Q  C  A  S  R  M  W  K  N  N  T  S  I  R  I  R  I  S  F  *  N  H  R  E  :  E  S  C  D  S  I  H  *  *  F  L  L  N  S  G  R  T   : G  K  T  K  R  Q  Q  P  R  E  L  A  F  G   : V  S  W  K  C  W  K  P  *  S  S  I  F  C  *  D  S  D  S  T  K  *  I  D  K  R  R :   C  E  G  E  A  S  K  I  *  *   : I  C  L  Q  W  *  R  *  Q  S  *  S  L  R  M  A  R  G  *  R  T  S  T   : G  N  S  V  *  R  M  D  A  W  F  Q  T  P  S  T  *  S  C  Q  S  C  *  S  T   : A  R  D  D  Q  Q  E  L  R  S  L  L  *  C  M  A  *  V  C  Q  I  M  D  C  H  Q  N  S  R  S  *  L  C  L  P  M  A  F  A   : G  G  D  R  N  E  S  *  W  E  A  W  N  V  *  *  G   : G  E  G  L  C  I  P  L  L  A  S  I  Q  G  L  P  S  H  T  V  L  R  R  T  F  W  L  R  S  K  A  C  S  S  H  *  Y  *  R  R  E  K  S  H  P  R  L  L  R  *  I  C  S  N  E  V  T  F  D  P  *  *  I  I  M  Q  R  S  Q  *  S  L  Q  A  S  F  P  S  K  N  L  F  N  C  T  F  K  Y  T  F  V  N  *  V  T  C  D  G  K  M  F  E  Q  N  F  A  R  V  I  L  D  *  F  L  C  K  D  </second_frame>
            <third_frame>   K  A  A  T  Q  T  L  A  E  N  S  L  S  L  C  A  C  E  R  E  R  E  P  T  M  A  G  L  N  I  L  S  Q  T  P  S  P  W  Q  L  S  A  S  S  T  S  S  S  I  S  Y  S  S  R  F  P  H  F  Y  D  F  N  N  N  Y  N  C  G  D  S  K  C  S  T  N  F  P  L  S  G  N  P  R  P  K  R  P  T  L  S  S  Q  M  Q  P  H  F  S  N  S  S   : G  S  E  C  S  W  M  Q  D  K  S  A  S  C  D  N  F  S  P  N  G  R  K  Q  G  A  L  N  A  A  S  S  K  E  R  A  L  V  S  S  V  D  D  L  Y  D  F  I  C  S  G  P  L  I  S  K  I  G  L  T  P  E  K  V  A  E  S  I  D  E  W  I  E  Y  G  L  R  L  C  R  L  F  Q  L  N  Q  L  S  L  N  E  A  Q  K  I  R  I  Y  H  Y  Y  I  P  V  F  L  W  C  E  Q  E  I  S  Q  H  S  S  K  F  K  E  E  E  E  I  P  P  L  V  :  I  G  F  S  A  P  Q  G  C  G  K  T  T  L  V  F  A  L  E  Y  L  F  K  I  T  G  R :   K  A  A  T  V  S  I  D  D  F  Y  L  T  A  E  E  Q  :  A  K  L  R  D  S  N  P  G  N  L  L  L  E  :  F  R  G  N  A  G  S  H  D  L  P  F  S  V  E  T  L  T  A  L  S  K  L  T  K  E   : G  V  K  V  K  L  P  R  Y  D  K  :  S  A  Y  S  G  R  G  D  R  A  D  P  S  E  W  P  E  V  E  G  P  L  P  :  V  I  L  F  E  G  W  M  L  G  F  K  P  L  P  P  E  V  V  K  A  V  D  P  Q  :  L  E  T  I  N  K  N  L  E  A  Y  Y  D  A  W  H  K  Y  V  K  S  W  I  V  I  K  I  Q  D  P  S  Y  V  Y  Q  W  R  L  Q  :  A  E  I  A  M  R  A  D  G  K  P  G  M  S  D  E  E  :  V  K  D  F  V  S  R  Y  L  P  A  Y  K  A  Y  L  P  T  L  Y  S  E  G  P  S  G  S  D  P  K  H  V  L  L  I  D  I  D  E  G  R  N  P  I  L  G  C  *  G  K  S  A  V  M  K  L  L  L  I  L  D  R  L  L  C  K  D  H  N  N  L  C  K  H  H  F  L  L  R  I  S  S  I  V  H  S  N  I  H  L  *  I  K  S  H  V  M  V  K  C  L  N  K  I  L  L  E  L  S  L  I  D  F  C  A  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79027" stop="78724"/>
                    <exon start="77889" stop="77504"/>
                    <exon start="77375" stop="77296"/>
                    <exon start="77216" stop="77165"/>
                    <exon start="77085" stop="77044"/>
                    <exon start="76973" stop="76895"/>
                    <exon start="76817" stop="76786"/>
                    <exon start="76706" stop="76638"/>
                    <exon start="76392" stop="76318"/>
                    <exon start="76235" stop="76119"/>
                    <exon start="76035" stop="75985"/>
                    <exon start="75881" stop="75738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAATQTLAENSLSLCACEREREPTMAGLNILSQTPSPWQLSASSTSSSISYSSRFPHFYDFNNNYNCGDSKCSTNFPLSGNPRPKRPTLSSQMQPHFSNSSGSECSWMQDKSASCDNFSPNGRKQGALNAASSKERALVSSVDDLYDFICSGPLISKIGLTPEKVAESIDEWIEYGLRLCRLFQLNQLSLNEAQKIRIYHYYIPVFLWCEQEISQHSSKFKEEEEIPPLVIGFSAPQGCGKTTLVFALEYLFKITGRKAATVSIDDFYLTAEEQAKLRDSNPGNLLLEFRGNAGSHDLPFSVETLTALSKLTKEGVKVKLPRYDKSAYSGRGDRADPSEWPEVEGPLPVILFEGWMLGFKPLPPEVVKAVDPQLETINKNLEAYYDAWHKYVKSWIVIKIQDPSYVYQWRLQAEIAMRADGKPGMSDEEVKDFVSRYLPAYKAYLPTLYSEGPSGSDPKHVLLIDIDEGRNPILGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="84711" PGL_stop="79819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84711" e_stop="84443"/>
            <exon e_start="84154" e_stop="84055"/>
            <exon e_start="83960" e_stop="83874"/>
            <exon e_start="83512" e_stop="83370"/>
            <exon e_start="82888" e_stop="82796"/>
            <exon e_start="82339" e_stop="82214"/>
            <exon e_start="81702" e_stop="81663"/>
            <exon e_start="81009" e_stop="80933"/>
            <exon e_start="80812" e_stop="80779"/>
            <exon e_start="80679" e_stop="80530"/>
            <exon e_start="80436" e_stop="80302"/>
            <exon e_start="80212" e_stop="79819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.750" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.554" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.999" e_score="0.954"/>
          <exon-intron don_prob="0.907" acc_prob="0.878" e_score="0.951"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.946"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.975"/>
          <exon-intron don_prob="0.996" acc_prob="0.913" e_score="0.987"/>
          <exon-intron don_prob="0.969" acc_prob="0.971" e_score="0.971"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.973"/>
          <exon-intron don_prob="0.947" acc_prob="0.157" e_score="0.948"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84711" e_stop="84443" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.750" acc_prob="0.979">
            <gDNA_intron_boundary i_start="84442" i_stop="84155" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84154" e_stop="84055" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.554" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84054" i_stop="83961" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="83960" e_stop="83874" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.655" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83873" i_stop="83513" i_length="361"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="83512" e_stop="83370" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.907" acc_prob="0.878">
            <gDNA_intron_boundary i_start="83369" i_stop="82889" i_length="481"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="82888" e_stop="82796" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="82795" i_stop="82340" i_length="456"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="82339" e_stop="82214" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82213" i_stop="81703" i_length="511"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="81702" e_stop="81663" e_length="40"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81662" i_stop="81010" i_length="653"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="81009" e_stop="80933" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.913">
            <gDNA_intron_boundary i_start="80932" i_stop="80813" i_length="120"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="80812" e_stop="80779" e_length="34"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.971">
            <gDNA_intron_boundary i_start="80778" i_stop="80680" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="0.973">
            <gDNA_exon_boundary e_start="80679" e_stop="80530" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80529" i_stop="80437" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="0.948">
            <gDNA_exon_boundary e_start="80436" e_stop="80302" e_length="135"/>
          </exon>
          <intron i_serial="11" don_prob="0.947" acc_prob="0.157">
            <gDNA_intron_boundary i_start="80301" i_stop="80213" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="0.904">
            <gDNA_exon_boundary e_start="80212" e_stop="79819" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84711" stop="84443"/>
              <exon start="84154" stop="84074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84149" stop="84055"/>
              <exon start="83960" stop="83874"/>
              <exon start="83512" stop="83370"/>
              <exon start="82888" stop="82796"/>
              <exon start="82339" stop="82214"/>
              <exon start="81702" stop="81663"/>
              <exon start="81009" stop="80933"/>
              <exon start="80812" stop="80779"/>
              <exon start="80679" stop="80575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84149" stop="84055"/>
              <exon start="83960" stop="83874"/>
              <exon start="83512" stop="83370"/>
              <exon start="82888" stop="82796"/>
              <exon start="82339" stop="82214"/>
              <exon start="81702" stop="81663"/>
              <exon start="81009" stop="80933"/>
              <exon start="80812" stop="80779"/>
              <exon start="80679" stop="80668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80935" stop="80933"/>
              <exon start="80812" stop="80779"/>
              <exon start="80679" stop="80530"/>
              <exon start="80436" stop="80302"/>
              <exon start="80212" stop="79819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425714" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTCAGCTGCAATTGAGCCCATGGTTCGAGTTACAAGATCTCGAGCTGCTGTCTCTGAAAAATCCATGGTTGCTAGCACTGGAGAACTGCCAAAGCAGCGGGGCCAGAAACGTGCTCTGCAGATAAGTTCTGACCCGGCAATCCTTAGGGTGAGGAACAAGAATGTTCCACTTACTTCCTGTGTGGAGCAGAAATGTCGGCCAGTGCTTAAGGATGTCACAAATCTATGTTGCAACACTTCAAATGGAGATGCTGTGAAAGTCCCA : AAGAAGAAGAAGATCATGCGGGTTGGAAACAGCTCAATGAATGTGTCTACCACTTCTGTTGACCCTGAAGTCTCTCAATTTCCAGCCAAGTTACCACCAA : GGAGTAGCCTTAATCAAAGTTGCTCAGACAGAAAGTCGCATGAACAACAAGGAAATGCAGTAGAAATCAAAGGTTTTCCAAGAAAAA : GCATAGTTAGGAAAGCTGTTCCTGATGCAGCACTATCAACATCAACAAAGTTGGACTTCATAGACATTGATTCTGATAAAAAAGATCCACTACAATGCAGTCAATATGCTCATGATATATATAACAATTTACGGGTTGCAGAG : CTAATTAGATGGCCGCTTTCAAATTTCATGGAAACACTCCAGCGAGATATCACAGAAAGTATGCGTGCAATCCTTGTCGACTGGATTGTGGAG : GTGTCGGAGGAATATAACTTGGTGCCAGATACACTCTATCTTGCTGTTCACTTTATCGATCTATTTCTCTCTAAAAACTATGTGGAAAGGAAAAACCTCCAGCTCCTTGGAATCACTTGCATGCTA : GTTCTGTTTCATCACTGACAATGCTTACACGAAAAATGAG : GTCCTGGCAATGGAGATTCTTGTTCTGAACTTTCTAGGTTTCCGACTCTCAACTCCAACTGCAAAGACCTTCCTCAG : GAGATTTATAAGAGCAGCACAAGCTTCTTACAAG : AATCCCAATTTGGAGCTAGAGTTCTTGGCTAATTATCTCACCGAACTGACATTGCTCGAATATGGCTTCTTGAAATTCACCCCGTCTGCTATTGCTGCATCATCTGTATTCCTTGCGAGATGGACTCTAGATCAGTCAAGCCACCCATGG : AGTCCAACACTGGAGCACTATACCTATTACAAGGCTCAACATCTGAAAACCACAGTTATTGCACTACAAGGTCTACAATTGAATATAAATAACTGCCTTCTAAATGTCATACGTGCTAAATACCGACAAGAAAAG : TTCAAGTCAGTCGCGTGTTTGTCTTCGCCAAAGCTGCTTGAGACATTGTTCCAAACATGAAACTTGAAGATACAAGACTAACCAAATGAGGCAGCAAATGCTGAAGCAGATGAGATATTCTATAAAGGGGCTTTTTTGCAACTTGGCTCCTCCCTAGGCTTTTTTTATGAGAGTAACTGATTCAAAATTCACATTGAGTGTTCCTTTTGTCCACTCTTTTGCTGTAAAGGCTTTGACATACTAGAAATAGACTTAAATGAGCAACTTTAGCAGTAAAAAATGAGCAACTTCCTCAGTTGTAATTCAAGAAAATCATGCAGGTGATTCTTTACATGCTAGTTTTTTCAACCCTGTTACCTTTGCCAGCTTTTGTAATTTAGAATGATTTGTCTCA</gDNA_template>
            <first_frame> *  S  Q  L  Q  L  S  P  W  F  E  L  Q  D  L  E  L  L  S  L  K  N  P  W  L  L  A  L  E  N  C  Q  S  S  G  A  R  N  V  L  C  R  *  V  L  T  R  Q  S  L  G  *  G  T  R  M  F  H  L  L  P  V  W  S  R  N  V  G  Q  C  L  R  M  S  Q  I  Y  V  A  T  L  Q  M  E  M  L  *  K  S  Q :   R  R  R  R  S  C  G  L  E  T  A  Q  *  M  C  L  P  L  L  L  T  L  K  S  L  N  F  Q  P  S  Y  H  Q  :  G  V  A  L  I  K  V  A  Q  T  E  S  R  M  N  N  K  E  M  Q  *  K  S  K  V  F  Q  E  K  :  A  *  L  G  K  L  F  L  M  Q  H  Y  Q  H  Q  Q  S  W  T  S  *  T  L  I  L  I  K  K  I  H  Y  N  A  V  N  M  L  M  I  Y  I  T  I  Y  G  L  Q  S :   *  L  D  G  R  F  Q  I  S  W  K  H  S  S  E  I  S  Q  K  V  C  V  Q  S  L  S  T  G  L  W  R :   C  R  R  N  I  T  W  C  Q  I  H  S  I  L  L  F  T  L  S  I  Y  F  S  L  K  T  M  W  K  G  K  T  S  S  S  L  E  S  L  A  C  * :   F  C  F  I  T  D  N  A  Y  T  K  N  E  :  V  L  A  M  E  I  L  V  L  N  F  L  G  F  R  L  S  T  P  T  A  K  T  F  L  R :   R  F  I  R  A  A  Q  A  S  Y  K  :  N  P  N  L  E  L  E  F  L  A  N  Y  L  T  E  L  T  L  L  E  Y  G  F  L  K  F  T  P  S  A  I  A  A  S  S  V  F  L  A  R  W  T  L  D  Q  S  S  H  P  W  :  S  P  T  L  E  H  Y  T  Y  Y  K  A  Q  H  L  K  T  T  V  I  A  L  Q  G  L  Q  L  N  I  N  N  C  L  L  N  V  I  R  A  K  Y  R  Q  E  K  :  F  K  S  V  A  C  L  S  S  P  K  L  L  E  T  L  F  Q  T  *  N  L  K  I  Q  D  *  P  N  E  A  A  N  A  E  A  D  E  I  F  Y  K  G  A  F  L  Q  L  G  S  S  L  G  F  F  Y  E  S  N  *  F  K  I  H  I  E  C  S  F  C  P  L  F  C  C  K  G  F  D  I  L  E  I  D  L  N  E  Q  L  *  Q  *  K  M  S  N  F  L  S  C  N  S  R  K  S  C  R  *  F  F  T  C  *  F  F  Q  P  C  Y  L  C  Q  L  L  *  F  R  M  I  C  L  </first_frame>
            <second_frame>  N  L  S  C  N  *  A  H  G  S  S  Y  K  I  S  S  C  C  L  *  K  I  H  G  C  *  H  W  R  T  A  K  A  A  G  P  E  T  C  S  A  D  K  F  *  P  G  N  P  *  G  E  E  Q  E  C  S  T  Y  F  L  C  G  A  E  M  S  A  S  A  *  G  C  H  K  S  M  L  Q  H  F  K  W  R  C  C  E  S  P   : K  E  E  E  D  H  A  G  W  K  Q  L  N  E  C  V  Y  H  F  C  *  P  *  S  L  S  I  S  S  Q  V  T  T  K :   E  *  P  *  S  K  L  L  R  Q  K  V  A  *  T  T  R  K  C  S  R  N  Q  R  F  S  K  K  K :   H  S  *  E  S  C  S  *  C  S  T  I  N  I  N  K  V  G  L  H  R  H  *  F  *  *  K  R  S  T  T  M  Q  S  I  C  S  *  Y  I  *  Q  F  T  G  C  R   : A  N  *  M  A  A  F  K  F  H  G  N  T  P  A  R  Y  H  R  K  Y  A  C  N  P  C  R  L  D  C  G   : G  V  G  G  I  *  L  G  A  R  Y  T  L  S  C  C  S  L  Y  R  S  I  S  L  *  K  L  C  G  K  E  K  P  P  A  P  W  N  H  L  H  A   : S  S  V  S  S  L  T  M  L  T  R  K  M  R :   S  W  Q  W  R  F  L  F  *  T  F  *  V  S  D  S  Q  L  Q  L  Q  R  P  S  S   : G  D  L  *  E  Q  H  K  L  L  T  R :   I  P  I  W  S  *  S  S  W  L  I  I  S  P  N  *  H  C  S  N  M  A  S  *  N  S  P  R  L  L  L  L  H  H  L  Y  S  L  R  D  G  L  *  I  S  Q  A  T  H  G :   V  Q  H  W  S  T  I  P  I  T  R  L  N  I  *  K  P  Q  L  L  H  Y  K  V  Y  N  *  I  *  I  T  A  F  *  M  S  Y  V  L  N  T  D  K  K  S :   S  S  Q  S  R  V  C  L  R  Q  S  C  L  R  H  C  S  K  H  E  T  *  R  Y  K  T  N  Q  M  R  Q  Q  M  L  K  Q  M  R  Y  S  I  K  G  L  F  C  N  L  A  P  P  *  A  F  F  M  R  V  T  D  S  K  F  T  L  S  V  P  F  V  H  S  F  A  V  K  A  L  T  Y  *  K  *  T  *  M  S  N  F  S  S  K  K  *  A  T  S  S  V  V  I  Q  E  N  H  A  G  D  S  L  H  A  S  F  F  N  P  V  T  F  A  S  F  C  N  L  E  *  F  V  S </second_frame>
            <third_frame>   I  S  A  A  I  E  P  M  V  R  V  T  R  S  R  A  A  V  S  E  K  S  M  V  A  S  T  G  E  L  P  K  Q  R  G  Q  K  R  A  L  Q  I  S  S  D  P  A  I  L  R  V  R  N  K  N  V  P  L  T  S  C  V  E  Q  K  C  R  P  V  L  K  D  V  T  N  L  C  C  N  T  S  N  G  D  A  V  K  V  P  :  K  K  K  K  I  M  R  V  G  N  S  S  M  N  V  S  T  T  S  V  D  P  E  V  S  Q  F  P  A  K  L  P  P   : R  S  S  L  N  Q  S  C  S  D  R  K  S  H  E  Q  Q  G  N  A  V  E  I  K  G  F  P  R  K   : S  I  V  R  K  A  V  P  D  A  A  L  S  T  S  T  K  L  D  F  I  D  I  D  S  D  K  K  D  P  L  Q  C  S  Q  Y  A  H  D  I  Y  N  N  L  R  V  A  E  :  L  I  R  W  P  L  S  N  F  M  E  T  L  Q  R  D  I  T  E  S  M  R  A  I  L  V  D  W  I  V  E  :  V  S  E  E  Y  N  L  V  P  D  T  L  Y  L  A  V  H  F  I  D  L  F  L  S  K  N  Y  V  E  R  K  N  L  Q  L  L  G  I  T  C  M  L  :  V  L  F  H  H  *  Q  C  L  H  E  K  *   : G  P  G  N  G  D  S  C  S  E  L  S  R  F  P  T  L  N  S  N  C  K  D  L  P  Q  :  E  I  Y  K  S  S  T  S  F  L  Q   : E  S  Q  F  G  A  R  V  L  G  *  L  S  H  R  T  D  I  A  R  I  W  L  L  E  I  H  P  V  C  Y  C  C  I  I  C  I  P  C  E  M  D  S  R  S  V  K  P  P  M   : E  S  N  T  G  A  L  Y  L  L  Q  G  S  T  S  E  N  H  S  Y  C  T  T  R  S  T  I  E  Y  K  *  L  P  S  K  C  H  T  C  *  I  P  T  R  K   : V  Q  V  S  R  V  F  V  F  A  K  A  A  *  D  I  V  P  N  M  K  L  E  D  T  R  L  T  K  *  G  S  K  C  *  S  R  *  D  I  L  *  R  G  F  F  A  T  W  L  L  P  R  L  F  L  *  E  *  L  I  Q  N  S  H  *  V  F  L  L  S  T  L  L  L  *  R  L  *  H  T  R  N  R  L  K  *  A  T  L  A  V  K  N  E  Q  L  P  Q  L  *  F  K  K  I  M  Q  V  I  L  Y  M  L  V  F  S  T  L  L  P  L  P  A  F  V  I  *  N  D  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84709" stop="84443"/>
                    <exon start="84154" stop="84055"/>
                    <exon start="83960" stop="83874"/>
                    <exon start="83512" stop="83370"/>
                    <exon start="82888" stop="82796"/>
                    <exon start="82339" stop="82214"/>
                    <exon start="81702" stop="81685"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISAAIEPMVRVTRSRAAVSEKSMVASTGELPKQRGQKRALQISSDPAILRVRNKNVPLTSCVEQKCRPVLKDVTNLCCNTSNGDAVKVPKKKKIMRVGNSSMNVSTTSVDPEVSQFPAKLPPRSSLNQSCSDRKSHEQQGNAVEIKGFPRKSIVRKAVPDAALSTSTKLDFIDIDSDKKDPLQCSQYAHDIYNNLRVAELIRWPLSNFMETLQRDITESMRAILVDWIVEVSEEYNLVPDTLYLAVHFIDLFLSKNYVERKNLQLLGITCMLVLFHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81701" stop="81663"/>
                    <exon start="81009" stop="80933"/>
                    <exon start="80812" stop="80779"/>
                    <exon start="80679" stop="80530"/>
                    <exon start="80436" stop="80302"/>
                    <exon start="80212" stop="80153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCFITDNAYTKNEVLAMEILVLNFLGFRLSTPTAKTFLRRFIRAAQASYKNPNLELEFLANYLTELTLLEYGFLKFTPSAIAASSVFLARWTLDQSSHPWSPTLEHYTYYKAQHLKTTVIALQGLQLNINNCLLNVIRAKYRQEKFKSVACLSSPKLLETLFQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="93181" PGL_stop="86828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93181" e_stop="92915"/>
            <exon e_start="92799" e_stop="92752"/>
            <exon e_start="91681" e_stop="91553"/>
            <exon e_start="91352" e_stop="91293"/>
            <exon e_start="89913" e_stop="89757"/>
            <exon e_start="89096" e_stop="88990"/>
            <exon e_start="88866" e_stop="88808"/>
            <exon e_start="88155" e_stop="88047"/>
            <exon e_start="87473" e_stop="86828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93181" e_stop="92915" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="92914" i_stop="92800" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92799" e_stop="92752" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92751" i_stop="91682" i_length="1070"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91681" e_stop="91553" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91552" i_stop="91353" i_length="200"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91352" e_stop="91293" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91292" i_stop="89914" i_length="1379"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89913" e_stop="89757" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89756" i_stop="89097" i_length="660"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89096" e_stop="88990" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.877">
            <gDNA_intron_boundary i_start="88989" i_stop="88867" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88866" e_stop="88808" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88807" i_stop="88156" i_length="652"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88155" e_stop="88047" e_length="109"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88046" i_stop="87474" i_length="573"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87473" e_stop="86828" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93181" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93151" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93119" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="89034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93119" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93105" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93067" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93066" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93066" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93066" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93065" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93064" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="89058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93064" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93060" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="89031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92980" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="89044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92980" stop="92915"/>
              <exon start="92799" stop="92752"/>
              <exon start="91681" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91651" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91639" stop="91553"/>
              <exon start="91352" stop="91293"/>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89913" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89827" stop="89757"/>
              <exon start="89096" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89072" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89072" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89072" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88994" stop="88990"/>
              <exon start="88866" stop="88808"/>
              <exon start="88155" stop="88047"/>
              <exon start="87473" stop="87260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88067" stop="88047"/>
              <exon start="87473" stop="86866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87249" stop="86828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGTCAAATTTATTCATTAATTTAACAAAAAGATCCAATTTTTATATTTTTTACGATCTCATTCTATATAAGTTCCAATCTTTTTGCAAGATCTTTTCAGAAAAGGAAAAAAGGCCTTTTTTACTTTCTGGGTAGGTGGATAAGAACTCTTATCTTTGAAGGGTTTTTTTTTTTTTTTATTGTTTTAGAGAGAAAAGAGGAAATGGGGTCTTTTGGAATGCTTGCTAGAAGGGCTGTGCTTACCGAGACACCAGTTATGGTTCAG : ATACAAGAACTGGTTCGAAGTAATAAAGGTTGTATTTCTCTAGCTCAG : GGAGTAGTGTACTGGCAACCACCTGCGCAAGCACTTGAAAAGGTGAAAGAAGCTATCTGGGAACCTTCAGTTAGTCGCTATGGTGCCGATGAGGGCCTTCCTGAACTTAGGGAGGCATTGATGCAAAAG : TTGGGTCGTGAAAATAACCTACATAAATCTTCAGTGATGGTTACTGCCGGTGCAAATCAG : GCTTTCGTAAATGTCGTTCTCACACTGTGTGATGCTGGGGATTCGGTCGTTATGTTTGCACCATACTATTTCAATGCACACATGTCATTCCAGATGACAGGTGTTACCGATATTCTGGTGGGTCCTGGTGATGCAAAGACACTCCATCCTGATGCAG : ACTGGTTGGAGAGTACTCTAAAGAATACTGTACCAACCCCAAAGCTTGTCACTGTTGTTAATCCCGGCAATCCATCAGGAACATATATTCCTGAGTCCCTTCTTAAG : AGGATATCTGATATTTGTAAGGAAGCGGGATGTTGGCTCGTAATTGATAACACATATGA : GTATTTTATGTATGATGATCGCAAGCATGTTTGCATAGAAGCAAACCACATTGTCAACATCTTTTCCTTCTCCAAAGCATATGGGATGATGGGATGGCGAGTTGGATAT : ATAGCATACCCATCGGAAGTGGAAGGGCTTGCAGTTCAACTCCTTAAAGTTCAGGACAACATACCGATTTGTGCTTCAATAATCTCACAACGACTGGCTCTCTACTCAATGGAAATGGGACCAGAATGGGTAGCTAATCAAGTTAAGGACCTTGTCAAGAACAGAGAGGTGCTACAAGAAGCCTTATCTCCTTTGGGAGAGGGGGCTGTTAAAGGGGGAGAAGCTGCCATTTACCTGTGGGCAAAGCTGCCAGATAAATACATGGACGACTTCAAAGTAGTTCACTGGCTAGCTAAGAGGCATGGAGTAGTCCTGATCCCTGGAAGTTCCAGCGGTTGTCCAGGTTATCTTAGGATCGCCTTTGGAGGATTGATTGAGAAGGACTGTCGAGTAGCTGCAGAAAGGCTCAGAAAAGGTTTGGAAGAGCTGGTAAATTTTGGAATGGTTTCATGATTCTCTCCTTGACATAAGTCATCAACAAAACCACTAAAGACACTTTGTACCCTTTAATAAATAATTCAAAGGTTTTAAGCTTTGCAATTTGATCATTGGAAATGCAAGCTAAAACTTGCCCATTCTGTATAGTTTGAAATCAAGTATTTCAGACACCTAATTTTCTTAAATGGATGATGGAAGTGTCTCATTT</gDNA_template>
            <first_frame> S  S  Q  I  Y  S  L  I  *  Q  K  D  P  I  F  I  F  F  T  I  S  F  Y  I  S  S  N  L  F  A  R  S  F  Q  K  R  K  K  G  L  F  Y  F  L  G  R  W  I  R  T  L  I  F  E  G  F  F  F  F  F  I  V  L  E  R  K  E  E  M  G  S  F  G  M  L  A  R  R  A  V  L  T  E  T  P  V  M  V  Q  :  I  Q  E  L  V  R  S  N  K  G  C  I  S  L  A  Q  :  G  V  V  Y  W  Q  P  P  A  Q  A  L  E  K  V  K  E  A  I  W  E  P  S  V  S  R  Y  G  A  D  E  G  L  P  E  L  R  E  A  L  M  Q  K  :  L  G  R  E  N  N  L  H  K  S  S  V  M  V  T  A  G  A  N  Q  :  A  F  V  N  V  V  L  T  L  C  D  A  G  D  S  V  V  M  F  A  P  Y  Y  F  N  A  H  M  S  F  Q  M  T  G  V  T  D  I  L  V  G  P  G  D  A  K  T  L  H  P  D  A   : D  W  L  E  S  T  L  K  N  T  V  P  T  P  K  L  V  T  V  V  N  P  G  N  P  S  G  T  Y  I  P  E  S  L  L  K  :  R  I  S  D  I  C  K  E  A  G  C  W  L  V  I  D  N  T  Y  E :   Y  F  M  Y  D  D  R  K  H  V  C  I  E  A  N  H  I  V  N  I  F  S  F  S  K  A  Y  G  M  M  G  W  R  V  G  Y  :  I  A  Y  P  S  E  V  E  G  L  A  V  Q  L  L  K  V  Q  D  N  I  P  I  C  A  S  I  I  S  Q  R  L  A  L  Y  S  M  E  M  G  P  E  W  V  A  N  Q  V  K  D  L  V  K  N  R  E  V  L  Q  E  A  L  S  P  L  G  E  G  A  V  K  G  G  E  A  A  I  Y  L  W  A  K  L  P  D  K  Y  M  D  D  F  K  V  V  H  W  L  A  K  R  H  G  V  V  L  I  P  G  S  S  S  G  C  P  G  Y  L  R  I  A  F  G  G  L  I  E  K  D  C  R  V  A  A  E  R  L  R  K  G  L  E  E  L  V  N  F  G  M  V  S  *  F  S  P  *  H  K  S  S  T  K  P  L  K  T  L  C  T  L  *  *  I  I  Q  R  F  *  A  L  Q  F  D  H  W  K  C  K  L  K  L  A  H  S  V  *  F  E  I  K  Y  F  R  H  L  I  F  L  N  G  *  W  K  C  L  I  </first_frame>
            <second_frame>  A  V  K  F  I  H  *  F  N  K  K  I  Q  F  L  Y  F  L  R  S  H  S  I  *  V  P  I  F  L  Q  D  L  F  R  K  G  K  K  A  F  F  T  F  W  V  G  G  *  E  L  L  S  L  K  G  F  F  F  F  L  L  F  *  R  E  K  R  K  W  G  L  L  E  C  L  L  E  G  L  C  L  P  R  H  Q  L  W  F  R :   Y  K  N  W  F  E  V  I  K  V  V  F  L  *  L  R :   E  *  C  T  G  N  H  L  R  K  H  L  K  R  *  K  K  L  S  G  N  L  Q  L  V  A  M  V  P  M  R  A  F  L  N  L  G  R  H  *  C  K  S :   W  V  V  K  I  T  Y  I  N  L  Q  *  W  L  L  P  V  Q  I  R :   L  S  *  M  S  F  S  H  C  V  M  L  G  I  R  S  L  C  L  H  H  T  I  S  M  H  T  C  H  S  R  *  Q  V  L  P  I  F  W  W  V  L  V  M  Q  R  H  S  I  L  M  Q  :  T  G  W  R  V  L  *  R  I  L  Y  Q  P  Q  S  L  S  L  L  L  I  P  A  I  H  Q  E  H  I  F  L  S  P  F  L  R :   G  Y  L  I  F  V  R  K  R  D  V  G  S  *  L  I  T  H  M   : S  I  L  C  M  M  I  A  S  M  F  A  *  K  Q  T  T  L  S  T  S  F  P  S  P  K  H  M  G  *  W  D  G  E  L  D  I :   *  H  T  H  R  K  W  K  G  L  Q  F  N  S  L  K  F  R  T  T  Y  R  F  V  L  Q  *  S  H  N  D  W  L  S  T  Q  W  K  W  D  Q  N  G  *  L  I  K  L  R  T  L  S  R  T  E  R  C  Y  K  K  P  Y  L  L  W  E  R  G  L  L  K  G  E  K  L  P  F  T  C  G  Q  S  C  Q  I  N  T  W  T  T  S  K  *  F  T  G  *  L  R  G  M  E  *  S  *  S  L  E  V  P  A  V  V  Q  V  I  L  G  S  P  L  E  D  *  L  R  R  T  V  E  *  L  Q  K  G  S  E  K  V  W  K  S  W  *  I  L  E  W  F  H  D  S  L  L  D  I  S  H  Q  Q  N  H  *  R  H  F  V  P  F  N  K  *  F  K  G  F  K  L  C  N  L  I  I  G  N  A  S  *  N  L  P  I  L  Y  S  L  K  S  S  I  S  D  T  *  F  S  *  M  D  D  G  S  V  S  F </second_frame>
            <third_frame>   Q  S  N  L  F  I  N  L  T  K  R  S  N  F  Y  I  F  Y  D  L  I  L  Y  K  F  Q  S  F  C  K  I  F  S  E  K  E  K  R  P  F  L  L  S  G  *  V  D  K  N  S  Y  L  *  R  V  F  F  F  F  Y  C  F  R  E  K  R  G  N  G  V  F  W  N  A  C  *  K  G  C  A  Y  R  D  T  S  Y  G  S   : D  T  R  T  G  S  K  *  *  R  L  Y  F  S  S  S   : G  S  S  V  L  A  T  T  C  A  S  T  *  K  G  E  R  S  Y  L  G  T  F  S  *  S  L  W  C  R  *  G  P  S  *  T  *  G  G  I  D  A  K   : V  G  S  *  K  *  P  T  *  I  F  S  D  G  Y  C  R  C  K  S   : G  F  R  K  C  R  S  H  T  V  *  C  W  G  F  G  R  Y  V  C  T  I  L  F  Q  C  T  H  V  I  P  D  D  R  C  Y  R  Y  S  G  G  S  W  *  C  K  D  T  P  S  *  C  R :   L  V  G  E  Y  S  K  E  Y  C  T  N  P  K  A  C  H  C  C  *  S  R  Q  S  I  R  N  I  Y  S  *  V  P  S  *   : E  D  I  *  Y  L  *  G  S  G  M  L  A  R  N  *  *  H  I  *  :  V  F  Y  V  *  *  S  Q  A  C  L  H  R  S  K  P  H  C  Q  H  L  F  L  L  Q  S  I  W  D  D  G  M  A  S  W  I   : Y  S  I  P  I  G  S  G  R  A  C  S  S  T  P  *  S  S  G  Q  H  T  D  L  C  F  N  N  L  T  T  T  G  S  L  L  N  G  N  G  T  R  M  G  S  *  S  S  *  G  P  C  Q  E  Q  R  G  A  T  R  S  L  I  S  F  G  R  G  G  C  *  R  G  R  S  C  H  L  P  V  G  K  A  A  R  *  I  H  G  R  L  Q  S  S  S  L  A  S  *  E  A  W  S  S  P  D  P  W  K  F  Q  R  L  S  R  L  S  *  D  R  L  W  R  I  D  *  E  G  L  S  S  S  C  R  K  A  Q  K  R  F  G  R  A  G  K  F  W  N  G  F  M  I  L  S  L  T  *  V  I  N  K  T  T  K  D  T  L  Y  P  L  I  N  N  S  K  V  L  S  F  A  I  *  S  L  E  M  Q  A  K  T  C  P  F  C  I  V  *  N  Q  V  F  Q  T  P  N  F  L  K  W  M  M  E  V  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93154" stop="92915"/>
                    <exon start="92799" stop="92752"/>
                    <exon start="91681" stop="91553"/>
                    <exon start="91352" stop="91293"/>
                    <exon start="89913" stop="89757"/>
                    <exon start="89096" stop="88990"/>
                    <exon start="88866" stop="88808"/>
                    <exon start="88155" stop="88047"/>
                    <exon start="87473" stop="87021"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKDPIFIFFTISFYISSNLFARSFQKRKKGLFYFLGRWIRTLIFEGFFFFFIVLERKEEMGSFGMLARRAVLTETPVMVQIQELVRSNKGCISLAQGVVYWQPPAQALEKVKEAIWEPSVSRYGADEGLPELREALMQKLGRENNLHKSSVMVTAGANQAFVNVVLTLCDAGDSVVMFAPYYFNAHMSFQMTGVTDILVGPGDAKTLHPDADWLESTLKNTVPTPKLVTVVNPGNPSGTYIPESLLKRISDICKEAGCWLVIDNTYEYFMYDDRKHVCIEANHIVNIFSFSKAYGMMGWRVGYIAYPSEVEGLAVQLLKVQDNIPICASIISQRLALYSMEMGPEWVANQVKDLVKNREVLQEALSPLGEGAVKGGEAAIYLWAKLPDKYMDDFKVVHWLAKRHGVVLIPGSSSGCPGYLRIAFGGLIEKDCRVAAERLRKGLEELVNFGMVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="98115" PGL_stop="97621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98115" e_stop="97621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98115" e_stop="97621" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98115" stop="97621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTTTATGGCGAGTATTATTGTCTAAATGTGCATATCACGTGAATATGGATATTGCTTGGAGGATGAGTGATAGGTTGTTGGAGATTAACCCAATGGATGATTCAGCTTATGTAATTTTGGCTAATGCTTATGCAAGTGCAGGTAGGTGGGATGAGGTGAGGGAGGTGTGGAAGAGAATGAAGGATAAGAAAGTGAGGAAGGAAGGTGGGAAGAGTTGGATTGAAGCGCTGGGAGAGGTTCATATGTTTTTAGCTGGTGATAGGAGGCATGAGAGAACCGATGAGATTTATGCCAAGTTAACAGAGTTAATGGAGGAGATTGAGAAACTGGGCTATGTGCCCGTATGGACTGAAATGTTGCATGAAGTAGAAGAGAAGGAGAAGAAGAAATCACTTTGGCATCACAGTGAGAAGCTGGCATTGGCATTTGGATTGTTGAATGGAACAGCACCACCTGGTAAAGCTTTGCGGATTGTGAAGAATTTGAGAATTT</gDNA_template>
            <first_frame> Q  L  Y  G  E  Y  Y  C  L  N  V  H  I  T  *  I  W  I  L  L  G  G  *  V  I  G  C  W  R  L  T  Q  W  M  I  Q  L  M  *  F  W  L  M  L  M  Q  V  Q  V  G  G  M  R  *  G  R  C  G  R  E  *  R  I  R  K  *  G  R  K  V  G  R  V  G  L  K  R  W  E  R  F  I  C  F  *  L  V  I  G  G  M  R  E  P  M  R  F  M  P  S  *  Q  S  *  W  R  R  L  R  N  W  A  M  C  P  Y  G  L  K  C  C  M  K  *  K  R  R  R  R  R  N  H  F  G  I  T  V  R  S  W  H  W  H  L  D  C  *  M  E  Q  H  H  L  V  K  L  C  G  L  *  R  I  *  E  F </first_frame>
            <second_frame>  S  F  M  A  S  I  I  V  *  M  C  I  S  R  E  Y  G  Y  C  L  E  D  E  *  *  V  V  G  D  *  P  N  G  *  F  S  L  C  N  F  G  *  C  L  C  K  C  R  *  V  G  *  G  E  G  G  V  E  E  N  E  G  *  E  S  E  E  G  R  W  E  E  L  D  *  S  A  G  R  G  S  Y  V  F  S  W  *  *  E  A  *  E  N  R  *  D  L  C  Q  V  N  R  V  N  G  G  D  *  E  T  G  L  C  A  R  M  D  *  N  V  A  *  S  R  R  E  G  E  E  E  I  T  L  A  S  Q  *  E  A  G  I  G  I  W  I  V  E  W  N  S  T  T  W  *  S  F  A  D  C  E  E  F  E  N   </second_frame>
            <third_frame>   A  L  W  R  V  L  L  S  K  C  A  Y  H  V  N  M  D  I  A  W  R  M  S  D  R  L  L  E  I  N  P  M  D  D  S  A  Y  V  I  L  A  N  A  Y  A  S  A  G  R  W  D  E  V  R  E  V  W  K  R  M  K  D  K  K  V  R  K  E  G  G  K  S  W  I  E  A  L  G  E  V  H  M  F  L  A  G  D  R  R  H  E  R  T  D  E  I  Y  A  K  L  T  E  L  M  E  E  I  E  K  L  G  Y  V  P  V  W  T  E  M  L  H  E  V  E  E  K  E  K  K  K  S  L  W  H  H  S  E  K  L  A  L  A  F  G  L  L  N  G  T  A  P  P  G  K  A  L  R  I  V  K  N  L  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98113" stop="97622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALWRVLLSKCAYHVNMDIAWRMSDRLLEINPMDDSAYVILANAYASAGRWDEVREVWKRMKDKKVRKEGGKSWIEALGEVHMFLAGDRRHERTDEIYAKLTELMEEIEKLGYVPVWTEMLHEVEEKEKKKSLWHHSEKLALAFGLLNGTAPPGKALRIVKNLRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="105474" PGL_stop="102767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105474" e_stop="105416"/>
            <exon e_start="105342" e_stop="105074"/>
            <exon e_start="104964" e_stop="104817"/>
            <exon e_start="104705" e_stop="104655"/>
            <exon e_start="104456" e_stop="104050"/>
            <exon e_start="103963" e_stop="103327"/>
            <exon e_start="103148" e_stop="102767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.995" e_score="0.962"/>
          <exon-intron don_prob="0.878" acc_prob="0.994" e_score="0.953"/>
          <exon-intron don_prob="0.921" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105474" e_stop="105416" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.761">
            <gDNA_intron_boundary i_start="105415" i_stop="105343" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="105342" e_stop="105074" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.995">
            <gDNA_intron_boundary i_start="105073" i_stop="104965" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="104964" e_stop="104817" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.878" acc_prob="0.994">
            <gDNA_intron_boundary i_start="104816" i_stop="104706" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104705" e_stop="104655" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.942">
            <gDNA_intron_boundary i_start="104654" i_stop="104457" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104456" e_stop="104050" e_length="407"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="104049" i_stop="103964" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103963" e_stop="103327" e_length="637"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103326" i_stop="103149" i_length="178"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="103148" e_stop="102767" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105474" stop="105416"/>
              <exon start="105342" stop="105115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105334" stop="105074"/>
              <exon start="104964" stop="104817"/>
              <exon start="104705" stop="104655"/>
              <exon start="104456" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105261" stop="105074"/>
              <exon start="104964" stop="104817"/>
              <exon start="104705" stop="104655"/>
              <exon start="104456" stop="104310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104924" stop="104817"/>
              <exon start="104705" stop="104655"/>
              <exon start="104456" stop="104050"/>
              <exon start="103963" stop="103881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104324" stop="104050"/>
              <exon start="103963" stop="103632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103920" stop="103482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103635" stop="103327"/>
              <exon start="103148" stop="102786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103510" stop="103327"/>
              <exon start="103148" stop="102767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATGCCGTGAATTGCAACTCGGGAATTCTGTACAGTCAGATCATCAAGACATCATG : GTTCACCCTAGTGATGTATTGGGGCCTTCTGTTCCTGGTCCTATTGTACTCGTTGTTGACTGCCCAACACCGTCTCATCTGCAAGAATTGTCGTCTATACATTCTCTCACTCCGTATTACTCAGATCCATCCAAACAATCCAAGGAAATGTGCAAAGAAGTTGATTGTGTGATACACCTTAGTCCTGCTTCAGTAACGTGTACAACTGAATATCAGCAATGGATGTCAAGATTTGGTGAGGTGCAGCACGTCATGGCAGGACATCAGCT : GAAGAATGTTGAGATTCCAATTCTGAAGTCTAGTGCAAGAATCGCCACAAGGCTGAACTACTTGTGCCCTCAATTCTTTCCTTCGCCTGGTTTTTGGTCTCTTCAGCAGTTAAAGAGCTTACCCTCAGTCTCTAAGGGTCCAAGTGAG : TTCTCTCTTCCAGCTTCATGTCAAGTTATTACGGCAGAGAACCTCCTCAAG : TTCCATCTTCGCCCATATGCACAGCTTGGTTTAGACAGATCTGGTATTCCTGAAATTACTTCTCGGCCAAAAATCATAGAAGACTTAATTACAGAAATTCCTGAAATTGTGGATGCTTCTGAGCATATTACCCAACTGTTGCATCATGGTAACAACATTGCAAATGGAGGCAGCACGACATTGCAGGCCAACAATGTTGTGATAGAAGAGCCCTGGTTGCATGAAACTGCATTACCTAGTTGTTTGGAAGGTATAACAAGAGAGGATATGGAGATTGTTCTTCTTGGAACTGGTTCTTCCCAGCCTTCAAAATATCGAAATGTCACTTCCATTTTTATCAATCTTTTCTCAAAGGGAAGTATTCTGTTAGATTGTGGTGAAGGAACATTGGGACAGCTAAAAAGAAG : ATTTGGCATTGAAGGTGCTGATGAAGCTGTAAAAGGTCTAAGGTGCATTTGGATTTCTCATATTCATGCTGATCATCATACTGGTATTGCAAGAATACTTGCTCTCCGACGCGATTTACTTTATGAAACTCCTCATGAACCTTTAGTTGTTGTGGGACCACGACAGCTTAAGATATTCCTTGATGCATACCAAAAGCTTGAGGACCTAGATATGCAGTTCCTCGATTGTAGGCAAACTACAGAAGCTTCATTGAGGACTTCTGATTCAGGTGAAAACAAGGATGCTAATGGGAGTGTAGGTGTACAAAATGACCAAAAGAATGGTTCTAACTTATTTGCTAAAGGTAGCCGTATGGAGAGTTATTGGAAGAGGCCAGGCAGCCCAGCTGATGCATCTGCAGCATTCCCAGTGCTGGCAATGTTGAAGAGAATTCTGAGAGAAGCAGGATTGGAAGCACTGATCAGCTTTCCTGTTATTCATTGTCCACAAGCATATGGTGTTGTCCTGAAGGCGGCGGATAGGACTAACAGCACTGGGAAAAAGATACCGGGGTGGAAAATTGTTTACTCTGGCGACACGAGGCCTTGTCCAGAACTAGTTGCAGCGTCCCATGGGGCCACAGTTCTTATTCATGAG : GCTACCTTTGAAGATGGCATGGTGGAAGAAGCCATAGCGAGAAATCACAGCACAACACAGGAAGCTATTGAAGTAGGGGACGCTGCTGGAGCATATCGAATCATCCTCACTCATTTCAGTCAAAGATACCCTAAAATTCCAGTTTTTGACGAAACACACATGCACAAAACAAGCATTGCTTTTGATATGATGAGTGTTAACTTAGCAGACCTACCCATGCTTCCAAGAGTTCTTCCATATCTTAAACTGCTATTTCGTGATGAAATGATTGTTGATGAATCTGATAATGTAAATGTTGCTACAGCAGCAGCTATTTGAGTTACTGAATAACACACACTGATCAATTTCTTTCTATTCATTTATACGCAGGAGTTAAATCACA</gDNA_template>
            <first_frame> Q  N  A  V  N  C  N  S  G  I  L  Y  S  Q  I  I  K  T  S  W :   F  T  L  V  M  Y  W  G  L  L  F  L  V  L  L  Y  S  L  L  T  A  Q  H  R  L  I  C  K  N  C  R  L  Y  I  L  S  L  R  I  T  Q  I  H  P  N  N  P  R  K  C  A  K  K  L  I  V  *  Y  T  L  V  L  L  Q  *  R  V  Q  L  N  I  S  N  G  C  Q  D  L  V  R  C  S  T  S  W  Q  D  I  S   : *  R  M  L  R  F  Q  F  *  S  L  V  Q  E  S  P  Q  G  *  T  T  C  A  L  N  S  F  L  R  L  V  F  G  L  F  S  S  *  R  A  Y  P  Q  S  L  R  V  Q  V  S :   S  L  F  Q  L  H  V  K  L  L  R  Q  R  T  S  S  S :   S  I  F  A  H  M  H  S  L  V  *  T  D  L  V  F  L  K  L  L  L  G  Q  K  S  *  K  T  *  L  Q  K  F  L  K  L  W  M  L  L  S  I  L  P  N  C  C  I  M  V  T  T  L  Q  M  E  A  A  R  H  C  R  P  T  M  L  *  *  K  S  P  G  C  M  K  L  H  Y  L  V  V  W  K  V  *  Q  E  R  I  W  R  L  F  F  L  E  L  V  L  P  S  L  Q  N  I  E  M  S  L  P  F  L  S  I  F  S  Q  R  E  V  F  C  *  I  V  V  K  E  H  W  D  S  *  K  E   : D  L  A  L  K  V  L  M  K  L  *  K  V  *  G  A  F  G  F  L  I  F  M  L  I  I  I  L  V  L  Q  E  Y  L  L  S  D  A  I  Y  F  M  K  L  L  M  N  L  *  L  L  W  D  H  D  S  L  R  Y  S  L  M  H  T  K  S  L  R  T  *  I  C  S  S  S  I  V  G  K  L  Q  K  L  H  *  G  L  L  I  Q  V  K  T  R  M  L  M  G  V  *  V  Y  K  M  T  K  R  M  V  L  T  Y  L  L  K  V  A  V  W  R  V  I  G  R  G  Q  A  A  Q  L  M  H  L  Q  H  S  Q  C  W  Q  C  *  R  E  F  *  E  K  Q  D  W  K  H  *  S  A  F  L  L  F  I  V  H  K  H  M  V  L  S  *  R  R  R  I  G  L  T  A  L  G  K  R  Y  R  G  G  K  L  F  T  L  A  T  R  G  L  V  Q  N  *  L  Q  R  P  M  G  P  Q  F  L  F  M  R :   L  P  L  K  M  A  W  W  K  K  P  *  R  E  I  T  A  Q  H  R  K  L  L  K  *  G  T  L  L  E  H  I  E  S  S  S  L  I  S  V  K  D  T  L  K  F  Q  F  L  T  K  H  T  C  T  K  Q  A  L  L  L  I  *  *  V  L  T  *  Q  T  Y  P  C  F  Q  E  F  F  H  I  L  N  C  Y  F  V  M  K  *  L  L  M  N  L  I  M  *  M  L  L  Q  Q  Q  L  F  E  L  L  N  N  T  H  *  S  I  S  F  Y  S  F  I  R  R  S  *  I  T </first_frame>
            <second_frame>  K  M  P  *  I  A  T  R  E  F  C  T  V  R  S  S  R  H  H   : G  S  P  *  *  C  I  G  A  F  C  S  W  S  Y  C  T  R  C  *  L  P  N  T  V  S  S  A  R  I  V  V  Y  T  F  S  H  S  V  L  L  R  S  I  Q  T  I  Q  G  N  V  Q  R  S  *  L  C  D  T  P  *  S  C  F  S  N  V  Y  N  *  I  S  A  M  D  V  K  I  W  *  G  A  A  R  H  G  R  T  S  A  :  E  E  C  *  D  S  N  S  E  V  *  C  K  N  R  H  K  A  E  L  L  V  P  S  I  L  S  F  A  W  F  L  V  S  S  A  V  K  E  L  T  L  S  L  *  G  S  K  *   : V  L  S  S  S  F  M  S  S  Y  Y  G  R  E  P  P  Q   : V  P  S  S  P  I  C  T  A  W  F  R  Q  I  W  Y  S  *  N  Y  F  S  A  K  N  H  R  R  L  N  Y  R  N  S  *  N  C  G  C  F  *  A  Y  Y  P  T  V  A  S  W  *  Q  H  C  K  W  R  Q  H  D  I  A  G  Q  Q  C  C  D  R  R  A  L  V  A  *  N  C  I  T  *  L  F  G  R  Y  N  K  R  G  Y  G  D  C  S  S  W  N  W  F  F  P  A  F  K  I  S  K  C  H  F  H  F  Y  Q  S  F  L  K  G  K  Y  S  V  R  L  W  *  R  N  I  G  T  A  K  K  K  :  I  W  H  *  R  C  *  *  S  C  K  R  S  K  V  H  L  D  F  S  Y  S  C  *  S  S  Y  W  Y  C  K  N  T  C  S  P  T  R  F  T  L  *  N  S  S  *  T  F  S  C  C  G  T  T  T  A  *  D  I  P  *  C  I  P  K  A  *  G  P  R  Y  A  V  P  R  L  *  A  N  Y  R  S  F  I  E  D  F  *  F  R  *  K  Q  G  C  *  W  E  C  R  C  T  K  *  P  K  E  W  F  *  L  I  C  *  R  *  P  Y  G  E  L  L  E  E  A  R  Q  P  S  *  C  I  C  S  I  P  S  A  G  N  V  E  E  N  S  E  R  S  R  I  G  S  T  D  Q  L  S  C  Y  S  L  S  T  S  I  W  C  C  P  E  G  G  G  *  D  *  Q  H  W  E  K  D  T  G  V  E  N  C  L  L  W  R  H  E  A  L  S  R  T  S  C  S  V  P  W  G  H  S  S  Y  S  *   : G  Y  L  *  R  W  H  G  G  R  S  H  S  E  K  S  Q  H  N  T  G  S  Y  *  S  R  G  R  C  W  S  I  S  N  H  P  H  S  F  Q  S  K  I  P  *  N  S  S  F  *  R  N  T  H  A  Q  N  K  H  C  F  *  Y  D  E  C  *  L  S  R  P  T  H  A  S  K  S  S  S  I  S  *  T  A  I  S  *  *  N  D  C  *  *  I  *  *  C  K  C  C  Y  S  S  S  Y  L  S  Y  *  I  T  H  T  D  Q  F  L  S  I  H  L  Y  A  G  V  K  S   </second_frame>
            <third_frame>   K  C  R  E  L  Q  L  G  N  S  V  Q  S  D  H  Q  D  I  M  :  V  H  P  S  D  V  L  G  P  S  V  P  G  P  I  V  L  V  V  D  C  P  T  P  S  H  L  Q  E  L  S  S  I  H  S  L  T  P  Y  Y  S  D  P  S  K  Q  S  K  E  M  C  K  E  V  D  C  V  I  H  L  S  P  A  S  V  T  C  T  T  E  Y  Q  Q  W  M  S  R  F  G  E  V  Q  H  V  M  A  G  H  Q  L :   K  N  V  E  I  P  I  L  K  S  S  A  R  I  A  T  R  L  N  Y  L  C  P  Q  F  F  P  S  P  G  F  W  S  L  Q  Q  L  K  S  L  P  S  V  S  K  G  P  S  E  :  F  S  L  P  A  S  C  Q  V  I  T  A  E  N  L  L  K  :  F  H  L  R  P  Y  A  Q  L  G  L  D  R  S  G  I  P  E  I  T  S  R  P  K  I  I  E  D  L  I  T  E  I  P  E  I  V  D  A  S  E  H  I  T  Q  L  L  H  H  G  N  N  I  A  N  G  G  S  T  T  L  Q  A  N  N  V  V  I  E  E  P  W  L  H  E  T  A  L  P  S  C  L  E  G  I  T  R  E  D  M  E  I  V  L  L  G  T  G  S  S  Q  P  S  K  Y  R  N  V  T  S  I  F  I  N  L  F  S  K  G  S  I  L  L  D  C  G  E  G  T  L  G  Q  L  K  R  R :   F  G  I  E  G  A  D  E  A  V  K  G  L  R  C  I  W  I  S  H  I  H  A  D  H  H  T  G  I  A  R  I  L  A  L  R  R  D  L  L  Y  E  T  P  H  E  P  L  V  V  V  G  P  R  Q  L  K  I  F  L  D  A  Y  Q  K  L  E  D  L  D  M  Q  F  L  D  C  R  Q  T  T  E  A  S  L  R  T  S  D  S  G  E  N  K  D  A  N  G  S  V  G  V  Q  N  D  Q  K  N  G  S  N  L  F  A  K  G  S  R  M  E  S  Y  W  K  R  P  G  S  P  A  D  A  S  A  A  F  P  V  L  A  M  L  K  R  I  L  R  E  A  G  L  E  A  L  I  S  F  P  V  I  H  C  P  Q  A  Y  G  V  V  L  K  A  A  D  R  T  N  S  T  G  K  K  I  P  G  W  K  I  V  Y  S  G  D  T  R  P  C  P  E  L  V  A  A  S  H  G  A  T  V  L  I  H  E  :  A  T  F  E  D  G  M  V  E  E  A  I  A  R  N  H  S  T  T  Q  E  A  I  E  V  G  D  A  A  G  A  Y  R  I  I  L  T  H  F  S  Q  R  Y  P  K  I  P  V  F  D  E  T  H  M  H  K  T  S  I  A  F  D  M  M  S  V  N  L  A  D  L  P  M  L  P  R  V  L  P  Y  L  K  L  L  F  R  D  E  M  I  V  D  E  S  D  N  V  N  V  A  T  A  A  A  I  *  V  T  E  *  H  T  L  I  N  F  F  L  F  I  Y  T  Q  E  L  N  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105472" stop="105416"/>
                    <exon start="105342" stop="105074"/>
                    <exon start="104964" stop="104817"/>
                    <exon start="104705" stop="104655"/>
                    <exon start="104456" stop="104050"/>
                    <exon start="103963" stop="103327"/>
                    <exon start="103148" stop="102831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCRELQLGNSVQSDHQDIMVHPSDVLGPSVPGPIVLVVDCPTPSHLQELSSIHSLTPYYSDPSKQSKEMCKEVDCVIHLSPASVTCTTEYQQWMSRFGEVQHVMAGHQLKNVEIPILKSSARIATRLNYLCPQFFPSPGFWSLQQLKSLPSVSKGPSEFSLPASCQVITAENLLKFHLRPYAQLGLDRSGIPEITSRPKIIEDLITEIPEIVDASEHITQLLHHGNNIANGGSTTLQANNVVIEEPWLHETALPSCLEGITREDMEIVLLGTGSSQPSKYRNVTSIFINLFSKGSILLDCGEGTLGQLKRRFGIEGADEAVKGLRCIWISHIHADHHTGIARILALRRDLLYETPHEPLVVVGPRQLKIFLDAYQKLEDLDMQFLDCRQTTEASLRTSDSGENKDANGSVGVQNDQKNGSNLFAKGSRMESYWKRPGSPADASAAFPVLAMLKRILREAGLEALISFPVIHCPQAYGVVLKAADRTNSTGKKIPGWKIVYSGDTRPCPELVAASHGATVLIHEATFEDGMVEEAIARNHSTTQEAIEVGDAAGAYRIILTHFSQRYPKIPVFDETHMHKTSIAFDMMSVNLADLPMLPRVLPYLKLLFRDEMIVDESDNVNVATAAAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="108916" PGL_stop="105485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108916" e_stop="108370"/>
            <exon e_start="107252" e_stop="107163"/>
            <exon e_start="106383" e_stop="106339"/>
            <exon e_start="106204" e_stop="106150"/>
            <exon e_start="106022" e_stop="105979"/>
            <exon e_start="105874" e_stop="105485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.872" e_score="0.998"/>
          <exon-intron don_prob="0.896" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="108916" e_stop="108370" e_length="547"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.872">
            <gDNA_intron_boundary i_start="108369" i_stop="107253" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107252" e_stop="107163" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.896" acc_prob="0.975">
            <gDNA_intron_boundary i_start="107162" i_stop="106384" i_length="779"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106383" e_stop="106339" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="106338" i_stop="106205" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106204" e_stop="106150" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106149" i_stop="106023" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106022" e_stop="105979" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.905" acc_prob="0.995">
            <gDNA_intron_boundary i_start="105978" i_stop="105875" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105874" e_stop="105485" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108916" stop="108370"/>
              <exon start="107252" stop="107163"/>
              <exon start="106383" stop="106339"/>
              <exon start="106204" stop="106150"/>
              <exon start="106022" stop="105979"/>
              <exon start="105874" stop="105864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108903" stop="108370"/>
              <exon start="107252" stop="107163"/>
              <exon start="106383" stop="106339"/>
              <exon start="106204" stop="106150"/>
              <exon start="106022" stop="105979"/>
              <exon start="105874" stop="105838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108793" stop="108370"/>
              <exon start="107252" stop="107166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107223" stop="107163"/>
              <exon start="106383" stop="106339"/>
              <exon start="106204" stop="106150"/>
              <exon start="106022" stop="105979"/>
              <exon start="105874" stop="105485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107223" stop="107163"/>
              <exon start="106383" stop="106339"/>
              <exon start="106204" stop="106150"/>
              <exon start="106022" stop="105979"/>
              <exon start="105874" stop="105544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATGACCTGACCCAACTCAACCTGATAACATGCAATGGCAAGTGCAAAATCTTTCAGACATGGGCGGGGTTTTATGTTTGTGAACCTAAAACCCTGTGTGTGTACAAATAAAATGCCCCAAATCTCAAGCCTACGCCGCTTGTTCTCCTCCGCCAATCACCACGCACTTCTCACTTCCCCTTTAACCCCAAAACCTCCGCTTTCCCTTTCTCATCTCTTCAAAATCAAACAACCCCCATTTCTCCATACCCACACTCACAAGCCCTGTCGTCTTCTCTTCGCCGCATATTCAAGAAAAACCAAAAATATCGAACGACCCGGTTCGTTGAGCGGTTCAAGAAGGCGTAGTAGTAGCAGTAGTTCAAATAAGGAGAATAAAGGGAAGTCGGTAATGGAAGAAAGTAGTAGTAGTAGTGCGATTGCTGAGTCTGTTGGGTTTAATAAAAGAAGGGCTGAAGGTAAAGATAAGAATGATGGTCCCAGGAAAAACCTTCAACTCAAAGTTCGCAAACTCAACCCTGTTAATACTATTTCATACGTCCAG : ATCCTTGGGACTGGCATGGATACACAAGATACAACACCCTCAGTCCTTCTCTTCTTTGATAAACAGAGGTTTATTTTTAATGCTGGAGAA : GGATTGCAACGCTTCTGCACAGAGCATAAAATTAAGCTATCAAAG : ATTGATCACATATTTCTGTCGCGAGTCTGTTCAGAAACTGCCGGTGGACTCCCAG : GTCTTTTATTGACTTTGGCTGGCATGGGAGAAGAAGGAATGTCT : GTCAATGTATGGGGTCCTTCTGATCTCAAGTACTTGGTCAATGCAATGAAATCATTCATCCCAAATGCCGCCATGGTCCATGCACGTAGTTTTGGCCCACCTATTGATTCTTCGGGGGCTACTGATGAACTCTTTGTTCCTATTAACGATGAGGTTGTCAAAATATCTGCTGTTCTGTTGCGACCACGTTACTCAAAAGTGTCTAAGACGACAAAGGCAGGATCCTCTGAACTTGATGATTCACTAGTTGGTGAAAATCTTTCAGCAGAGAGGATGCAGTCCACAGCTGAATTTGCATTGAAGCCTGGGGATCTTGCTGTAGTGTATATCTGTGAGTTGCCTGAAATTAAGGGAAAGTTTGATCCCAAAAAGGCTGCTGCTCTTGGGTTG</gDNA_template>
            <first_frame> S  N  D  L  T  Q  L  N  L  I  T  C  N  G  K  C  K  I  F  Q  T  W  A  G  F  Y  V  C  E  P  K  T  L  C  V  Y  K  *  N  A  P  N  L  K  P  T  P  L  V  L  L  R  Q  S  P  R  T  S  H  F  P  F  N  P  K  T  S  A  F  P  F  S  S  L  Q  N  Q  T  T  P  I  S  P  Y  P  H  S  Q  A  L  S  S  S  L  R  R  I  F  K  K  N  Q  K  Y  R  T  T  R  F  V  E  R  F  K  K  A  *  *  *  Q  *  F  K  *  G  E  *  R  E  V  G  N  G  R  K  *  *  *  *  C  D  C  *  V  C  W  V  *  *  K  K  G  *  R  *  R  *  E  *  W  S  Q  E  K  P  S  T  Q  S  S  Q  T  Q  P  C  *  Y  Y  F  I  R  P   : D  P  W  D  W  H  G  Y  T  R  Y  N  T  L  S  P  S  L  L  *  *  T  E  V  Y  F  *  C  W  R   : R  I  A  T  L  L  H  R  A  *  N  *  A  I  K   : D  *  S  H  I  S  V  A  S  L  F  R  N  C  R  W  T  P  R :   S  F  I  D  F  G  W  H  G  R  R  R  N  V   : C  Q  C  M  G  S  F  *  S  Q  V  L  G  Q  C  N  E  I  I  H  P  K  C  R  H  G  P  C  T  *  F  W  P  T  Y  *  F  F  G  G  Y  *  *  T  L  C  S  Y  *  R  *  G  C  Q  N  I  C  C  S  V  A  T  T  L  L  K  S  V  *  D  D  K  G  R  I  L  *  T  *  *  F  T  S  W  *  K  S  F  S  R  E  D  A  V  H  S  *  I  C  I  E  A  W  G  S  C  C  S  V  Y  L  *  V  A  *  N  *  G  K  V  *  S  Q  K  G  C  C  S  W  V  </first_frame>
            <second_frame>  V  M  T  *  P  N  S  T  *  *  H  A  M  A  S  A  K  S  F  R  H  G  R  G  F  M  F  V  N  L  K  P  C  V  C  T  N  K  M  P  Q  I  S  S  L  R  R  L  F  S  S  A  N  H  H  A  L  L  T  S  P  L  T  P  K  P  P  L  S  L  S  H  L  F  K  I  K  Q  P  P  F  L  H  T  H  T  H  K  P  C  R  L  L  F  A  A  Y  S  R  K  T  K  N  I  E  R  P  G  S  L  S  G  S  R  R  R  S  S  S  S  S  S  N  K  E  N  K  G  K  S  V  M  E  E  S  S  S  S  S  A  I  A  E  S  V  G  F  N  K  R  R  A  E  G  K  D  K  N  D  G  P  R  K  N  L  Q  L  K  V  R  K  L  N  P  V  N  T  I  S  Y  V  Q  :  I  L  G  T  G  M  D  T  Q  D  T  T  P  S  V  L  L  F  F  D  K  Q  R  F  I  F  N  A  G  E  :  G  L  Q  R  F  C  T  E  H  K  I  K  L  S  K  :  I  D  H  I  F  L  S  R  V  C  S  E  T  A  G  G  L  P   : G  L  L  L  T  L  A  G  M  G  E  E  G  M  S  :  V  N  V  W  G  P  S  D  L  K  Y  L  V  N  A  M  K  S  F  I  P  N  A  A  M  V  H  A  R  S  F  G  P  P  I  D  S  S  G  A  T  D  E  L  F  V  P  I  N  D  E  V  V  K  I  S  A  V  L  L  R  P  R  Y  S  K  V  S  K  T  T  K  A  G  S  S  E  L  D  D  S  L  V  G  E  N  L  S  A  E  R  M  Q  S  T  A  E  F  A  L  K  P  G  D  L  A  V  V  Y  I  C  E  L  P  E  I  K  G  K  F  D  P  K  K  A  A  A  L  G  L </second_frame>
            <third_frame>   *  *  P  D  P  T  Q  P  D  N  M  Q  W  Q  V  Q  N  L  S  D  M  G  G  V  L  C  L  *  T  *  N  P  V  C  V  Q  I  K  C  P  K  S  Q  A  Y  A  A  C  S  P  P  P  I  T  T  H  F  S  L  P  L  *  P  Q  N  L  R  F  P  F  L  I  S  S  K  S  N  N  P  H  F  S  I  P  T  L  T  S  P  V  V  F  S  S  P  H  I  Q  E  K  P  K  I  S  N  D  P  V  R  *  A  V  Q  E  G  V  V  V  A  V  V  Q  I  R  R  I  K  G  S  R  *  W  K  K  V  V  V  V  V  R  L  L  S  L  L  G  L  I  K  E  G  L  K  V  K  I  R  M  M  V  P  G  K  T  F  N  S  K  F  A  N  S  T  L  L  I  L  F  H  T  S  R :   S  L  G  L  A  W  I  H  K  I  Q  H  P  Q  S  F  S  S  L  I  N  R  G  L  F  L  M  L  E  K :   D  C  N  A  S  A  Q  S  I  K  L  S  Y  Q  R :   L  I  T  Y  F  C  R  E  S  V  Q  K  L  P  V  D  S  Q  :  V  F  Y  *  L  W  L  A  W  E  K  K  E  C  L :   S  M  Y  G  V  L  L  I  S  S  T  W  S  M  Q  *  N  H  S  S  Q  M  P  P  W  S  M  H  V  V  L  A  H  L  L  I  L  R  G  L  L  M  N  S  L  F  L  L  T  M  R  L  S  K  Y  L  L  F  C  C  D  H  V  T  Q  K  C  L  R  R  Q  R  Q  D  P  L  N  L  M  I  H  *  L  V  K  I  F  Q  Q  R  G  C  S  P  Q  L  N  L  H  *  S  L  G  I  L  L  *  C  I  S  V  S  C  L  K  L  R  E  S  L  I  P  K  R  L  L  L  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108885" stop="108370"/>
                    <exon start="107252" stop="107163"/>
                    <exon start="106383" stop="106339"/>
                    <exon start="106204" stop="106150"/>
                    <exon start="106022" stop="105979"/>
                    <exon start="105874" stop="105485"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAMASAKSFRHGRGFMFVNLKPCVCTNKMPQISSLRRLFSSANHHALLTSPLTPKPPLSLSHLFKIKQPPFLHTHTHKPCRLLFAAYSRKTKNIERPGSLSGSRRRSSSSSSNKENKGKSVMEESSSSSAIAESVGFNKRRAEGKDKNDGPRKNLQLKVRKLNPVNTISYVQILGTGMDTQDTTPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGLPGLLLTLAGMGEEGMSVNVWGPSDLKYLVNAMKSFIPNAAMVHARSFGPPIDSSGATDELFVPINDEVVKISAVLLRPRYSKVSKTTKAGSSELDDSLVGENLSAERMQSTAEFALKPGDLAVVYICELPEIKGKFDPKKAAALGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="112034" PGL_stop="110323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112034" e_stop="111749"/>
            <exon e_start="111463" e_stop="111213"/>
            <exon e_start="111137" e_stop="110511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.895"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="112034" e_stop="111749" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111463" e_stop="111213" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="111137" e_stop="110511" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112034" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111970" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111944" stop="111749"/>
              <exon start="111463" stop="111262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111941" stop="111749"/>
              <exon start="111463" stop="111263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111040"/>
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            <referenceDNA id="SGN-E301358" strand="+"/>
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              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111899" stop="111749"/>
              <exon start="111463" stop="111244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111898" stop="111749"/>
              <exon start="111463" stop="111255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111895" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111894" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111892" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111884" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111883" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111873" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111870" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111865" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111861" stop="111749"/>
              <exon start="111463" stop="111225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111855" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111844" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111828" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111827" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111824" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111824" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111809" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111779" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111776" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111427" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111383" stop="111213"/>
              <exon start="111137" stop="110696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111379" stop="111213"/>
              <exon start="111137" stop="110698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111376" stop="111213"/>
              <exon start="111137" stop="111064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111213"/>
              <exon start="111137" stop="110728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111342" stop="111213"/>
              <exon start="111137" stop="110892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111325" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111310" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436520" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111300" stop="111213"/>
              <exon start="111137" stop="110597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111292" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111213"/>
              <exon start="111137" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="110534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111026" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405448" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110927" stop="110511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110921" stop="110519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110891" stop="110573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110835" stop="110525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATATTAAAAAATATTTGTACACTCCTACTACTACGTATACTACTTACTATATATATGTGACAAAGAAATGTCTATTTGTGTCATCCAAAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG : GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT : GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGC</gDNA_template>
            <first_frame> F  I  L  K  N  I  C  T  L  L  L  L  R  I  L  L  T  I  Y  M  *  Q  R  N  V  Y  L  C  H  P  K  A  I  F  L  S  K  D  L  L  L  V  V  N  *  I  I  I  F  V  V  K  M  A  G  G  V  A  I  G  S  F  S  D  S  F  S  V  V  S  L  K  S  Y  L  A  E  F  I  S  T  L  I  F  V  F  A  G  V  G  S  A  I  A  Y   : G  K  L  T  T  N  A  A  L  D  P  A  G  L  V  A  I  A  V  C  H  G  F  A  L  F  V  A  V  S  I  S  A  N  I  S  G  G  H  V  N  P  A  V  T  C  G  L  T  F  G  G  H  I  T  F  I  T  G  S  F  Y  M  L  A  Q  L  T  G  A  A  V  A  C  F  L  L  K  F  V  T  G  G  C  :  A  I  P  T  H  G  V  G  A  G  V  S  I  L  E  G  L  V  M  E  I  I  I  T  F  G  L  V  Y  T  V  F  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  L  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  M  V  S  G  N  F  E  G  F  W  I  Y  W  I  G  P  L  V  G  G  S  L  A  G  L  I  Y  T  N  V  F  M  T  Q  E  H  A  P  L  S  N  E  F  *  I  E  F  V  *  V  *  F  V  G  L  K  K  S  P  F  E  F  R  F  F  *  K  K  K  K  R  G  K  K  K  Q  Y  F  C  Y  F  F  L  C  F  F  F  P  Q  L  L  Y  C  F  S  S  S  L  V  C  S  C  T  S  I  I  F  W  *  D  V  L  V  M  M  L  *  F  D  E  I  I  R  N  H  P  L  M  P  S </first_frame>
            <second_frame>  L  Y  *  K  I  F  V  H  S  Y  Y  Y  V  Y  Y  L  L  Y  I  C  D  K  E  M  S  I  C  V  I  Q  K  Q  F  F  S  L  R  I  Y  Y  *  *  *  I  K  L  L  F  L  *  *  K  W  L  A  A  *  L  L  E  V  L  V  I  H  S  A  L  S  L  L  S  P  I  L  P  N  S  S  P  H  S  S  L  S  S  P  E  L  V  P  P  L  L  T  :  A  S  *  Q  Q  M  L  H  L  I  R  L  G  L  *  L  L  Q  F  A  M  D  L  L  Y  S  *  P  F  R  F  P  L  T  S  P  V  V  M  L  T  L  R  S  P  V  D  *  P  S  A  D  I  L  P  L  S  L  A  P  S  T  C  L  L  N  L  P  A  P  L  *  L  A  S  S  S  N  S  S  P  E  D  V :   L  F  Q  P  M  E  W  E  L  V  *  A  Y  *  K  D  S  *  W  K  *  *  S  H  L  V  *  F  I  L  C  S  Q  P  P  L  T  R  R  R  V  H  W  A  Q  L  H  R  L  Q  L  V  S  L  L  E  L  I  F  W  L  P  D  H  S  P  V  D  Q  *  T  Q  L  V  H  L  D  L  Q  W  L  V  V  T  L  R  V  S  G  S  T  G  L  V  H  *  L  V  V  V  W  L  V  L  F  T  Q  M  C  S  *  H  K  N  M  L  L  Y  P  M  S  S  K  L  N  L  F  E  F  D  L  W  V  *  K  K  A  H  L  N  F  V  F  F  K  K  K  K  K  E  G  R  K  N  N  I  F  V  I  S  F  F  V  F  F  S  P  N  C  C  I  V  F  L  V  L  W  F  A  A  V  H  P  L  S  F  G  E  M  F  L  L  *  C  S  N  L  M  K  S  F  A  I  I  H  *  C  L   </second_frame>
            <third_frame>   Y  I  K  K  Y  L  Y  T  P  T  T  T  Y  T  T  Y  Y  I  Y  V  T  K  K  C  L  F  V  S  S  K  S  N  F  S  L  *  G  S  I  I  S  S  E  L  N  Y  Y  F  C  S  K  N  G  W  R  R  S  Y  W  K  F  *  *  F  I  Q  R  C  L  S  *  V  L  S  C  R  I  H  L  H  T  H  L  C  L  R  R  S  W  F  R  H  C  L  R :   Q  V  D  N  K  C  C  T  *  S  G  W  A  C  S  Y  C  S  L  P  W  I  C  S  I  R  S  R  F  D  F  R  *  H  L  R  W  S  C  *  P  C  G  H  L  W  I  N  L  R  R  T  Y  Y  L  Y  H  W  L  L  L  H  A  C  S  T  Y  R  R  R  C  S  L  L  P  P  Q  I  R  H  R  R  M   : C  Y  S  N  P  W  S  G  S  W  C  E  H  T  R  R  T  R  D  G  N  N  N  H  I  W  F  S  L  Y  C  V  R  N  R  R  *  P  E  E  G  F  I  G  H  N  C  T  D  C  N  W  S  H  C  W  S  *  Y  F  G  C  R  T  I  L  R  W  I  N  E  P  S  S  F  I  W  T  C  N  G  *  W  *  L  *  G  F  L  D  L  L  D  W  S  I  S  W  W  *  F  G  W  S  Y  L  H  K  C  V  H  D  T  R  T  C  S  F  I  Q  *  V  L  N  *  I  C  L  S  L  I  C  G  S  K  K  K  P  I  *  I  S  F  F  L  K  K  K  K  K  R  E  E  K  T  I  F  L  L  F  L  S  L  F  F  F  P  P  I  V  V  L  F  F  *  F  F  G  L  Q  L  Y  I  H  Y  L  L  V  R  C  S  C  Y  D  A  L  I  *  *  N  H  S  Q  S  S  I  N  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111899" stop="111749"/>
                    <exon start="111463" stop="111213"/>
                    <exon start="111137" stop="110769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIIFVVKMAGGVAIGSFSDSFSVVSLKSYLAEFISTLIFVFAGVGSAIAYGKLTTNAALDPAGLVAIAVCHGFALFVAVSISANISGGHVNPAVTCGLTFGGHITFITGSFYMLAQLTGAAVACFLLKFVTGGCAIPTHGVGAGVSILEGLVMEIIITFGLVYTVFATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAMVSGNFEGFWIYWIGPLVGGSLAGLIYTNVFMTQEHAPLSNEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112034" e_stop="111749"/>
            <exon e_start="111463" e_stop="111213"/>
            <exon e_start="111137" e_stop="110520"/>
            <exon e_start="110338" e_stop="110323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.895"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.657" e_score="0.914"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="112034" e_stop="111749" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110835" stop="110525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATATTAAAAAATATTTGTACACTCCTACTACTACGTATACTACTTACTATATATATGTGACAAAGAAATGTCTATTTGTGTCATCCAAAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG : GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT : GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA : AAAAGGAGAAAAAAAA</gDNA_template>
            <first_frame> F  I  L  K  N  I  C  T  L  L  L  L  R  I  L  L  T  I  Y  M  *  Q  R  N  V  Y  L  C  H  P  K  A  I  F  L  S  K  D  L  L  L  V  V  N  *  I  I  I  F  V  V  K  M  A  G  G  V  A  I  G  S  F  S  D  S  F  S  V  V  S  L  K  S  Y  L  A  E  F  I  S  T  L  I  F  V  F  A  G  V  G  S  A  I  A  Y   : G  K  L  T  T  N  A  A  L  D  P  A  G  L  V  A  I  A  V  C  H  G  F  A  L  F  V  A  V  S  I  S  A  N  I  S  G  G  H  V  N  P  A  V  T  C  G  L  T  F  G  G  H  I  T  F  I  T  G  S  F  Y  M  L  A  Q  L  T  G  A  A  V  A  C  F  L  L  K  F  V  T  G  G  C  :  A  I  P  T  H  G  V  G  A  G  V  S  I  L  E  G  L  V  M  E  I  I  I  T  F  G  L  V  Y  T  V  F  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  L  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  M  V  S  G  N  F  E  G  F  W  I  Y  W  I  G  P  L  V  G  G  S  L  A  G  L  I  Y  T  N  V  F  M  T  Q  E  H  A  P  L  S  N  E  F  *  I  E  F  V  *  V  *  F  V  G  L  K  K  S  P  F  E  F  R  F  F  *  K  K  K  K  R  G  K  K  K  Q  Y  F  C  Y  F  F  L  C  F  F  F  P  Q  L  L  Y  C  F  S  S  S  L  V  C  S  C  T  S  I  I  F  W  *  D  V  L  V  M  M  L  *  F  D  E  I  I  R  N  H  P  L  :  K  R  R  K  K  </first_frame>
            <second_frame>  L  Y  *  K  I  F  V  H  S  Y  Y  Y  V  Y  Y  L  L  Y  I  C  D  K  E  M  S  I  C  V  I  Q  K  Q  F  F  S  L  R  I  Y  Y  *  *  *  I  K  L  L  F  L  *  *  K  W  L  A  A  *  L  L  E  V  L  V  I  H  S  A  L  S  L  L  S  P  I  L  P  N  S  S  P  H  S  S  L  S  S  P  E  L  V  P  P  L  L  T  :  A  S  *  Q  Q  M  L  H  L  I  R  L  G  L  *  L  L  Q  F  A  M  D  L  L  Y  S  *  P  F  R  F  P  L  T  S  P  V  V  M  L  T  L  R  S  P  V  D  *  P  S  A  D  I  L  P  L  S  L  A  P  S  T  C  L  L  N  L  P  A  P  L  *  L  A  S  S  S  N  S  S  P  E  D  V :   L  F  Q  P  M  E  W  E  L  V  *  A  Y  *  K  D  S  *  W  K  *  *  S  H  L  V  *  F  I  L  C  S  Q  P  P  L  T  R  R  R  V  H  W  A  Q  L  H  R  L  Q  L  V  S  L  L  E  L  I  F  W  L  P  D  H  S  P  V  D  Q  *  T  Q  L  V  H  L  D  L  Q  W  L  V  V  T  L  R  V  S  G  S  T  G  L  V  H  *  L  V  V  V  W  L  V  L  F  T  Q  M  C  S  *  H  K  N  M  L  L  Y  P  M  S  S  K  L  N  L  F  E  F  D  L  W  V  *  K  K  A  H  L  N  F  V  F  F  K  K  K  K  K  E  G  R  K  N  N  I  F  V  I  S  F  F  V  F  F  S  P  N  C  C  I  V  F  L  V  L  W  F  A  A  V  H  P  L  S  F  G  E  M  F  L  L  *  C  S  N  L  M  K  S  F  A  I  I  H  * :   K  G  E  K  K </second_frame>
            <third_frame>   Y  I  K  K  Y  L  Y  T  P  T  T  T  Y  T  T  Y  Y  I  Y  V  T  K  K  C  L  F  V  S  S  K  S  N  F  S  L  *  G  S  I  I  S  S  E  L  N  Y  Y  F  C  S  K  N  G  W  R  R  S  Y  W  K  F  *  *  F  I  Q  R  C  L  S  *  V  L  S  C  R  I  H  L  H  T  H  L  C  L  R  R  S  W  F  R  H  C  L  R :   Q  V  D  N  K  C  C  T  *  S  G  W  A  C  S  Y  C  S  L  P  W  I  C  S  I  R  S  R  F  D  F  R  *  H  L  R  W  S  C  *  P  C  G  H  L  W  I  N  L  R  R  T  Y  Y  L  Y  H  W  L  L  L  H  A  C  S  T  Y  R  R  R  C  S  L  L  P  P  Q  I  R  H  R  R  M   : C  Y  S  N  P  W  S  G  S  W  C  E  H  T  R  R  T  R  D  G  N  N  N  H  I  W  F  S  L  Y  C  V  R  N  R  R  *  P  E  E  G  F  I  G  H  N  C  T  D  C  N  W  S  H  C  W  S  *  Y  F  G  C  R  T  I  L  R  W  I  N  E  P  S  S  F  I  W  T  C  N  G  *  W  *  L  *  G  F  L  D  L  L  D  W  S  I  S  W  W  *  F  G  W  S  Y  L  H  K  C  V  H  D  T  R  T  C  S  F  I  Q  *  V  L  N  *  I  C  L  S  L  I  C  G  S  K  K  K  P  I  *  I  S  F  F  L  K  K  K  K  K  R  E  E  K  T  I  F  L  L  F  L  S  L  F  F  F  P  P  I  V  V  L  F  F  *  F  F  G  L  Q  L  Y  I  H  Y  L  L  V  R  C  S  C  Y  D  A  L  I  *  *  N  H  S  Q  S  S  I   : K  K  E  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111899" stop="111749"/>
                    <exon start="111463" stop="111213"/>
                    <exon start="111137" stop="110769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIIFVVKMAGGVAIGSFSDSFSVVSLKSYLAEFISTLIFVFAGVGSAIAYGKLTTNAALDPAGLVAIAVCHGFALFVAVSISANISGGHVNPAVTCGLTFGGHITFITGSFYMLAQLTGAAVACFLLKFVTGGCAIPTHGVGAGVSILEGLVMEIIITFGLVYTVFATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAMVSGNFEGFWIYWIGPLVGGSLAGLIYTNVFMTQEHAPLSNEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112034" e_stop="111749"/>
            <exon e_start="111463" e_stop="111213"/>
            <exon e_start="111137" e_stop="110528"/>
            <exon e_start="110338" e_stop="110323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.895"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.657" e_score="0.911"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="112034" e_stop="111749" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111463" e_stop="111213" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="111137" e_stop="110528" e_length="610"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.657">
            <gDNA_intron_boundary i_start="110527" i_stop="110339" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="0.812">
            <gDNA_exon_boundary e_start="110338" e_stop="110323" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112034" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111970" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111944" stop="111749"/>
              <exon start="111463" stop="111262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111941" stop="111749"/>
              <exon start="111463" stop="111263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111938" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210569" strand="+"/>
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              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111892" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111884" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111883" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111873" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111870" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111865" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111861" stop="111749"/>
              <exon start="111463" stop="111225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111855" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111844" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="111097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111828" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111827" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111824" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111824" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111809" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111779" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111776" stop="111749"/>
              <exon start="111463" stop="111213"/>
              <exon start="111137" stop="110696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111451" stop="111213"/>
              <exon start="111137" stop="110528"/>
              <exon start="110338" stop="110323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602912" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111427" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111383" stop="111213"/>
              <exon start="111137" stop="110696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111379" stop="111213"/>
              <exon start="111137" stop="110698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111376" stop="111213"/>
              <exon start="111137" stop="111064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111213"/>
              <exon start="111137" stop="110728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111342" stop="111213"/>
              <exon start="111137" stop="110892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111325" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111310" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436520" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111300" stop="111213"/>
              <exon start="111137" stop="110597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111292" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111213"/>
              <exon start="111137" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="110534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111026" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405448" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110891" stop="110573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATATTAAAAAATATTTGTACACTCCTACTACTACGTATACTACTTACTATATATATGTGACAAAGAAATGTCTATTTGTGTCATCCAAAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG : GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT : GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATC : AAAAGGAGAAAAAAAA</gDNA_template>
            <first_frame> F  I  L  K  N  I  C  T  L  L  L  L  R  I  L  L  T  I  Y  M  *  Q  R  N  V  Y  L  C  H  P  K  A  I  F  L  S  K  D  L  L  L  V  V  N  *  I  I  I  F  V  V  K  M  A  G  G  V  A  I  G  S  F  S  D  S  F  S  V  V  S  L  K  S  Y  L  A  E  F  I  S  T  L  I  F  V  F  A  G  V  G  S  A  I  A  Y   : G  K  L  T  T  N  A  A  L  D  P  A  G  L  V  A  I  A  V  C  H  G  F  A  L  F  V  A  V  S  I  S  A  N  I  S  G  G  H  V  N  P  A  V  T  C  G  L  T  F  G  G  H  I  T  F  I  T  G  S  F  Y  M  L  A  Q  L  T  G  A  A  V  A  C  F  L  L  K  F  V  T  G  G  C  :  A  I  P  T  H  G  V  G  A  G  V  S  I  L  E  G  L  V  M  E  I  I  I  T  F  G  L  V  Y  T  V  F  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  L  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  M  V  S  G  N  F  E  G  F  W  I  Y  W  I  G  P  L  V  G  G  S  L  A  G  L  I  Y  T  N  V  F  M  T  Q  E  H  A  P  L  S  N  E  F  *  I  E  F  V  *  V  *  F  V  G  L  K  K  S  P  F  E  F  R  F  F  *  K  K  K  K  R  G  K  K  K  Q  Y  F  C  Y  F  F  L  C  F  F  F  P  Q  L  L  Y  C  F  S  S  S  L  V  C  S  C  T  S  I  I  F  W  *  D  V  L  V  M  M  L  *  F  D  E  I  I  R  N   : Q  K  E  K  K   </first_frame>
            <second_frame>  L  Y  *  K  I  F  V  H  S  Y  Y  Y  V  Y  Y  L  L  Y  I  C  D  K  E  M  S  I  C  V  I  Q  K  Q  F  F  S  L  R  I  Y  Y  *  *  *  I  K  L  L  F  L  *  *  K  W  L  A  A  *  L  L  E  V  L  V  I  H  S  A  L  S  L  L  S  P  I  L  P  N  S  S  P  H  S  S  L  S  S  P  E  L  V  P  P  L  L  T  :  A  S  *  Q  Q  M  L  H  L  I  R  L  G  L  *  L  L  Q  F  A  M  D  L  L  Y  S  *  P  F  R  F  P  L  T  S  P  V  V  M  L  T  L  R  S  P  V  D  *  P  S  A  D  I  L  P  L  S  L  A  P  S  T  C  L  L  N  L  P  A  P  L  *  L  A  S  S  S  N  S  S  P  E  D  V :   L  F  Q  P  M  E  W  E  L  V  *  A  Y  *  K  D  S  *  W  K  *  *  S  H  L  V  *  F  I  L  C  S  Q  P  P  L  T  R  R  R  V  H  W  A  Q  L  H  R  L  Q  L  V  S  L  L  E  L  I  F  W  L  P  D  H  S  P  V  D  Q  *  T  Q  L  V  H  L  D  L  Q  W  L  V  V  T  L  R  V  S  G  S  T  G  L  V  H  *  L  V  V  V  W  L  V  L  F  T  Q  M  C  S  *  H  K  N  M  L  L  Y  P  M  S  S  K  L  N  L  F  E  F  D  L  W  V  *  K  K  A  H  L  N  F  V  F  F  K  K  K  K  K  E  G  R  K  N  N  I  F  V  I  S  F  F  V  F  F  S  P  N  C  C  I  V  F  L  V  L  W  F  A  A  V  H  P  L  S  F  G  E  M  F  L  L  *  C  S  N  L  M  K  S  F  A  I  :  K  R  R  K  K  </second_frame>
            <third_frame>   Y  I  K  K  Y  L  Y  T  P  T  T  T  Y  T  T  Y  Y  I  Y  V  T  K  K  C  L  F  V  S  S  K  S  N  F  S  L  *  G  S  I  I  S  S  E  L  N  Y  Y  F  C  S  K  N  G  W  R  R  S  Y  W  K  F  *  *  F  I  Q  R  C  L  S  *  V  L  S  C  R  I  H  L  H  T  H  L  C  L  R  R  S  W  F  R  H  C  L  R :   Q  V  D  N  K  C  C  T  *  S  G  W  A  C  S  Y  C  S  L  P  W  I  C  S  I  R  S  R  F  D  F  R  *  H  L  R  W  S  C  *  P  C  G  H  L  W  I  N  L  R  R  T  Y  Y  L  Y  H  W  L  L  L  H  A  C  S  T  Y  R  R  R  C  S  L  L  P  P  Q  I  R  H  R  R  M   : C  Y  S  N  P  W  S  G  S  W  C  E  H  T  R  R  T  R  D  G  N  N  N  H  I  W  F  S  L  Y  C  V  R  N  R  R  *  P  E  E  G  F  I  G  H  N  C  T  D  C  N  W  S  H  C  W  S  *  Y  F  G  C  R  T  I  L  R  W  I  N  E  P  S  S  F  I  W  T  C  N  G  *  W  *  L  *  G  F  L  D  L  L  D  W  S  I  S  W  W  *  F  G  W  S  Y  L  H  K  C  V  H  D  T  R  T  C  S  F  I  Q  *  V  L  N  *  I  C  L  S  L  I  C  G  S  K  K  K  P  I  *  I  S  F  F  L  K  K  K  K  K  R  E  E  K  T  I  F  L  L  F  L  S  L  F  F  F  P  P  I  V  V  L  F  F  *  F  F  G  L  Q  L  Y  I  H  Y  L  L  V  R  C  S  C  Y  D  A  L  I  *  *  N  H  S  Q  S :   K  G  E  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111899" stop="111749"/>
                    <exon start="111463" stop="111213"/>
                    <exon start="111137" stop="110769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIIFVVKMAGGVAIGSFSDSFSVVSLKSYLAEFISTLIFVFAGVGSAIAYGKLTTNAALDPAGLVAIAVCHGFALFVAVSISANISGGHVNPAVTCGLTFGGHITFITGSFYMLAQLTGAAVACFLLKFVTGGCAIPTHGVGAGVSILEGLVMEIIITFGLVYTVFATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAMVSGNFEGFWIYWIGPLVGGSLAGLIYTNVFMTQEHAPLSNEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111944" e_stop="111749"/>
            <exon e_start="111463" e_stop="110511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111944" e_stop="111749" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111748" i_stop="111464" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111463" e_stop="110511" e_length="953"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111944" stop="111749"/>
              <exon start="111463" stop="111262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111941" stop="111749"/>
              <exon start="111463" stop="111263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111940" stop="111749"/>
              <exon start="111463" stop="111223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111749"/>
              <exon start="111463" stop="111337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111937" stop="111749"/>
              <exon start="111463" stop="111281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111934" stop="111749"/>
              <exon start="111463" stop="111256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111931" stop="111749"/>
              <exon start="111463" stop="111290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111930" stop="111749"/>
              <exon start="111463" stop="111434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111929" stop="111749"/>
              <exon start="111463" stop="111266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111924" stop="111749"/>
              <exon start="111463" stop="111304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111909" stop="111749"/>
              <exon start="111463" stop="111291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111907" stop="111749"/>
              <exon start="111463" stop="111242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111907" stop="111749"/>
              <exon start="111463" stop="111275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111906" stop="111749"/>
              <exon start="111463" stop="111275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111905" stop="111749"/>
              <exon start="111463" stop="111260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111899" stop="111749"/>
              <exon start="111463" stop="111244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111898" stop="111749"/>
              <exon start="111463" stop="111255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111861" stop="111749"/>
              <exon start="111463" stop="111225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="110699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="110534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111026" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405448" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110927" stop="110511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110921" stop="110519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110891" stop="110573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110835" stop="110525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCAATTTTTCTCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACG : GCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGTAAGTCCTTCAATTTTTACGACCGATTTTTATTTTGTTTTAGATTACTAATTTCACTTTTTACGACGATCTCAGGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTAATGCCTAGC</gDNA_template>
            <first_frame> K  A  I  F  L  S  K  D  L  L  L  V  V  N  *  I  I  I  F  V  V  K  M  A  G  G  V  A  I  G  S  F  S  D  S  F  S  V  V  S  L  K  S  Y  L  A  E  F  I  S  T  L  I  F  V  F  A  G  V  G  S  A  I  A  Y   : G  K  L  T  T  N  A  A  L  D  P  A  G  L  V  A  I  A  V  C  H  G  F  A  L  F  V  A  V  S  I  S  A  N  I  S  G  G  H  V  N  P  A  V  T  C  G  L  T  F  G  G  H  I  T  F  I  T  G  S  F  Y  M  L  A  Q  L  T  G  A  A  V  A  C  F  L  L  K  F  V  T  G  G  C  V  S  P  S  I  F  T  T  D  F  Y  F  V  L  D  Y  *  F  H  F  L  R  R  S  Q  A  I  P  T  H  G  V  G  A  G  V  S  I  L  E  G  L  V  M  E  I  I  I  T  F  G  L  V  Y  T  V  F  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  L  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  M  V  S  G  N  F  E  G  F  W  I  Y  W  I  G  P  L  V  G  G  S  L  A  G  L  I  Y  T  N  V  F  M  T  Q  E  H  A  P  L  S  N  E  F  *  I  E  F  V  *  V  *  F  V  G  L  K  K  S  P  F  E  F  R  F  F  *  K  K  K  K  R  G  K  K  K  Q  Y  F  C  Y  F  F  L  C  F  F  F  P  Q  L  L  Y  C  F  S  S  S  L  V  C  S  C  T  S  I  I  F  W  *  D  V  L  V  M  M  L  *  F  D  E  I  I  R  N  H  P  L  M  P  S </first_frame>
            <second_frame>  K  Q  F  F  S  L  R  I  Y  Y  *  *  *  I  K  L  L  F  L  *  *  K  W  L  A  A  *  L  L  E  V  L  V  I  H  S  A  L  S  L  L  S  P  I  L  P  N  S  S  P  H  S  S  L  S  S  P  E  L  V  P  P  L  L  T  :  A  S  *  Q  Q  M  L  H  L  I  R  L  G  L  *  L  L  Q  F  A  M  D  L  L  Y  S  *  P  F  R  F  P  L  T  S  P  V  V  M  L  T  L  R  S  P  V  D  *  P  S  A  D  I  L  P  L  S  L  A  P  S  T  C  L  L  N  L  P  A  P  L  *  L  A  S  S  S  N  S  S  P  E  D  V  *  V  L  Q  F  L  R  P  I  F  I  L  F  *  I  T  N  F  T  F  Y  D  D  L  R  L  F  Q  P  M  E  W  E  L  V  *  A  Y  *  K  D  S  *  W  K  *  *  S  H  L  V  *  F  I  L  C  S  Q  P  P  L  T  R  R  R  V  H  W  A  Q  L  H  R  L  Q  L  V  S  L  L  E  L  I  F  W  L  P  D  H  S  P  V  D  Q  *  T  Q  L  V  H  L  D  L  Q  W  L  V  V  T  L  R  V  S  G  S  T  G  L  V  H  *  L  V  V  V  W  L  V  L  F  T  Q  M  C  S  *  H  K  N  M  L  L  Y  P  M  S  S  K  L  N  L  F  E  F  D  L  W  V  *  K  K  A  H  L  N  F  V  F  F  K  K  K  K  K  E  G  R  K  N  N  I  F  V  I  S  F  F  V  F  F  S  P  N  C  C  I  V  F  L  V  L  W  F  A  A  V  H  P  L  S  F  G  E  M  F  L  L  *  C  S  N  L  M  K  S  F  A  I  I  H  *  C  L   </second_frame>
            <third_frame>   S  N  F  S  L  *  G  S  I  I  S  S  E  L  N  Y  Y  F  C  S  K  N  G  W  R  R  S  Y  W  K  F  *  *  F  I  Q  R  C  L  S  *  V  L  S  C  R  I  H  L  H  T  H  L  C  L  R  R  S  W  F  R  H  C  L  R :   Q  V  D  N  K  C  C  T  *  S  G  W  A  C  S  Y  C  S  L  P  W  I  C  S  I  R  S  R  F  D  F  R  *  H  L  R  W  S  C  *  P  C  G  H  L  W  I  N  L  R  R  T  Y  Y  L  Y  H  W  L  L  L  H  A  C  S  T  Y  R  R  R  C  S  L  L  P  P  Q  I  R  H  R  R  M  C  K  S  F  N  F  Y  D  R  F  L  F  C  F  R  L  L  I  S  L  F  T  T  I  S  G  Y  S  N  P  W  S  G  S  W  C  E  H  T  R  R  T  R  D  G  N  N  N  H  I  W  F  S  L  Y  C  V  R  N  R  R  *  P  E  E  G  F  I  G  H  N  C  T  D  C  N  W  S  H  C  W  S  *  Y  F  G  C  R  T  I  L  R  W  I  N  E  P  S  S  F  I  W  T  C  N  G  *  W  *  L  *  G  F  L  D  L  L  D  W  S  I  S  W  W  *  F  G  W  S  Y  L  H  K  C  V  H  D  T  R  T  C  S  F  I  Q  *  V  L  N  *  I  C  L  S  L  I  C  G  S  K  K  K  P  I  *  I  S  F  F  L  K  K  K  K  K  R  E  E  K  T  I  F  L  L  F  L  S  L  F  F  F  P  P  I  V  V  L  F  F  *  F  F  G  L  Q  L  Y  I  H  Y  L  L  V  R  C  S  C  Y  D  A  L  I  *  *  N  H  S  Q  S  S  I  N  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111899" stop="111749"/>
                    <exon start="111463" stop="111162"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIIFVVKMAGGVAIGSFSDSFSVVSLKSYLAEFISTLIFVFAGVGSAIAYGKLTTNAALDPAGLVAIAVCHGFALFVAVSISANISGGHVNPAVTCGLTFGGHITFITGSFYMLAQLTGAAVACFLLKFVTGGCVSPSIFTTDFYFVLDY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111161" stop="110769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHFLRRSQAIPTHGVGAGVSILEGLVMEIIITFGLVYTVFATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAMVSGNFEGFWIYWIGPLVGGSLAGLIYTNVFMTQEHAPLSNEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="111931" e_stop="111213"/>
            <exon e_start="111137" e_stop="110520"/>
            <exon e_start="110338" e_stop="110323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.657" e_score="0.914"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="111931" e_stop="111213" e_length="719"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111212" i_stop="111138" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="111137" e_stop="110520" e_length="618"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.657">
            <gDNA_intron_boundary i_start="110519" i_stop="110339" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="0.812">
            <gDNA_exon_boundary e_start="110338" e_stop="110323" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111931" stop="111213"/>
              <exon start="111137" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111930" stop="111478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111654" stop="111213"/>
              <exon start="111137" stop="110722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111427" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111213"/>
              <exon start="111137" stop="110789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111383" stop="111213"/>
              <exon start="111137" stop="110696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111379" stop="111213"/>
              <exon start="111137" stop="110698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111376" stop="111213"/>
              <exon start="111137" stop="111064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111213"/>
              <exon start="111137" stop="110728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111342" stop="111213"/>
              <exon start="111137" stop="110892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111325" stop="111213"/>
              <exon start="111137" stop="110690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111310" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436520" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111300" stop="111213"/>
              <exon start="111137" stop="110597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111292" stop="111213"/>
              <exon start="111137" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111213"/>
              <exon start="111137" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111213" stop="111213"/>
              <exon start="111137" stop="110520"/>
              <exon start="110338" stop="110329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="110534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111026" stop="110578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405448" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="110528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110891" stop="110573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110864" stop="110520"/>
              <exon start="110338" stop="110323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110864" stop="110520"/>
              <exon start="110338" stop="110323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110864" stop="110520"/>
              <exon start="110338" stop="110323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110864" stop="110520"/>
              <exon start="110338" stop="110323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110835" stop="110525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTAAGGATCTATTATTAGTAGTGAATTAAATTATTATTTTTGTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGTTAATAACTCCGATCCGATCCCTCTTTTTCATTTTAATTGTTAACGAATTCTGCGGTTCCAAGTTTGATTTATTGCTTCTGACTCGGAATTATGCCCCGCATAATATGGTTAATGCTTATTTTGAATTCATATCAAATAGATTGATTCAGGTTTATAAGTTATACCAAAATCATATCCTTTTACTAGATCCGCTTCTGATCAAGTAATATATATTCTATTTTTGTGTATTTTTACTATTGATCGATGTATGAGAGATTTTAAATTTGGTATTGTTTGGATACAGGCAAGTTGACAACAAATGCTGCACTTGATCCGGCTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACCCTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTGTAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGT : GCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCGTGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGACCCGAAGAAGGGTTCATTGGGCACAATTGCACCGATTGCAATTGGTCTCATTGTTGGAGCTAATATTTTGGCTGCCGGACCATTCTCCGGTGGATCAATGAACCCAGCTCGTTCATTTGGACCTGCAATGGTTAGTGGTAACTTTGAGGGTTTCTGGATCTACTGGATTGGTCCATTAGTTGGTGGTAGTTTGGCTGGTCTTATTTACACAAATGTGTTCATGACACAAGAACATGCTCCTTTATCCAATGAGTTCTAAATTGAATTTGTTTGAGTTTGATTTGTGGGTCTAAAAAAAAGCCCATTTGAATTTCGTTTTTTTTAAAAAAAAAAAAAAAGAGGGAAGAAAAAACAATATTTTTGTTATTTCTTTCTTTGTTTTTTTTTCCCCCAATTGTTGTATTGTTTTTCTAGTTCTTTGGTTTGCAGCTGTACATCCATTATCTTTTGGTGAGATGTTCTTGTTATGATGCTCTAATTTGATGAAATCATTCGCAATCATCCATTA : AAAAGGAGAAAAAAAA</gDNA_template>
            <first_frame> S  L  R  I  Y  Y  *  *  *  I  K  L  L  F  L  *  *  K  W  L  A  A  *  L  L  E  V  L  V  I  H  S  A  L  S  L  L  S  P  I  L  P  N  S  S  P  H  S  S  L  S  S  P  E  L  V  P  P  L  L  T  V  N  N  S  D  P  I  P  L  F  H  F  N  C  *  R  I  L  R  F  Q  V  *  F  I  A  S  D  S  E  L  C  P  A  *  Y  G  *  C  L  F  *  I  H  I  K  *  I  D  S  G  L  *  V  I  P  K  S  Y  P  F  T  R  S  A  S  D  Q  V  I  Y  I  L  F  L  C  I  F  T  I  D  R  C  M  R  D  F  K  F  G  I  V  W  I  Q  A  S  *  Q  Q  M  L  H  L  I  R  L  G  L  *  L  L  Q  F  A  M  D  L  L  Y  S  *  P  F  R  F  P  L  T  S  P  V  V  M  L  T  L  R  S  P  V  D  *  P  S  A  D  I  L  P  L  S  L  A  P  S  T  C  L  L  N  L  P  A  P  L  *  L  A  S  S  S  N  S  S  P  E  D  V :   L  F  Q  P  M  E  W  E  L  V  *  A  Y  *  K  D  S  *  W  K  *  *  S  H  L  V  *  F  I  L  C  S  Q  P  P  L  T  R  R  R  V  H  W  A  Q  L  H  R  L  Q  L  V  S  L  L  E  L  I  F  W  L  P  D  H  S  P  V  D  Q  *  T  Q  L  V  H  L  D  L  Q  W  L  V  V  T  L  R  V  S  G  S  T  G  L  V  H  *  L  V  V  V  W  L  V  L  F  T  Q  M  C  S  *  H  K  N  M  L  L  Y  P  M  S  S  K  L  N  L  F  E  F  D  L  W  V  *  K  K  A  H  L  N  F  V  F  F  K  K  K  K  K  E  G  R  K  N  N  I  F  V  I  S  F  F  V  F  F  S  P  N  C  C  I  V  F  L  V  L  W  F  A  A  V  H  P  L  S  F  G  E  M  F  L  L  *  C  S  N  L  M  K  S  F  A  I  I  H  * :   K  G  E  K  K </first_frame>
            <second_frame>  L  *  G  S  I  I  S  S  E  L  N  Y  Y  F  C  S  K  N  G  W  R  R  S  Y  W  K  F  *  *  F  I  Q  R  C  L  S  *  V  L  S  C  R  I  H  L  H  T  H  L  C  L  R  R  S  W  F  R  H  C  L  R  L  I  T  P  I  R  S  L  F  F  I  L  I  V  N  E  F  C  G  S  K  F  D  L  L  L  L  T  R  N  Y  A  P  H  N  M  V  N  A  Y  F  E  F  I  S  N  R  L  I  Q  V  Y  K  L  Y  Q  N  H  I  L  L  L  D  P  L  L  I  K  *  Y  I  F  Y  F  C  V  F  L  L  L  I  D  V  *  E  I  L  N  L  V  L  F  G  Y  R  Q  V  D  N  K  C  C  T  *  S  G  W  A  C  S  Y  C  S  L  P  W  I  C  S  I  R  S  R  F  D  F  R  *  H  L  R  W  S  C  *  P  C  G  H  L  W  I  N  L  R  R  T  Y  Y  L  Y  H  W  L  L  L  H  A  C  S  T  Y  R  R  R  C  S  L  L  P  P  Q  I  R  H  R  R  M   : C  Y  S  N  P  W  S  G  S  W  C  E  H  T  R  R  T  R  D  G  N  N  N  H  I  W  F  S  L  Y  C  V  R  N  R  R  *  P  E  E  G  F  I  G  H  N  C  T  D  C  N  W  S  H  C  W  S  *  Y  F  G  C  R  T  I  L  R  W  I  N  E  P  S  S  F  I  W  T  C  N  G  *  W  *  L  *  G  F  L  D  L  L  D  W  S  I  S  W  W  *  F  G  W  S  Y  L  H  K  C  V  H  D  T  R  T  C  S  F  I  Q  *  V  L  N  *  I  C  L  S  L  I  C  G  S  K  K  K  P  I  *  I  S  F  F  L  K  K  K  K  K  R  E  E  K  T  I  F  L  L  F  L  S  L  F  F  F  P  P  I  V  V  L  F  F  *  F  F  G  L  Q  L  Y  I  H  Y  L  L  V  R  C  S  C  Y  D  A  L  I  *  *  N  H  S  Q  S  S  I   : K  K  E  K  K   </second_frame>
            <third_frame>   S  K  D  L  L  L  V  V  N  *  I  I  I  F  V  V  K  M  A  G  G  V  A  I  G  S  F  S  D  S  F  S  V  V  S  L  K  S  Y  L  A  E  F  I  S  T  L  I  F  V  F  A  G  V  G  S  A  I  A  Y  G  *  *  L  R  S  D  P  S  F  S  F  *  L  L  T  N  S  A  V  P  S  L  I  Y  C  F  *  L  G  I  M  P  R  I  I  W  L  M  L  I  L  N  S  Y  Q  I  D  *  F  R  F  I  S  Y  T  K  I  I  S  F  Y  *  I  R  F  *  S  S  N  I  Y  S  I  F  V  Y  F  Y  Y  *  S  M  Y  E  R  F  *  I  W  Y  C  L  D  T  G  K  L  T  T  N  A  A  L  D  P  A  G  L  V  A  I  A  V  C  H  G  F  A  L  F  V  A  V  S  I  S  A  N  I  S  G  G  H  V  N  P  A  V  T  C  G  L  T  F  G  G  H  I  T  F  I  T  G  S  F  Y  M  L  A  Q  L  T  G  A  A  V  A  C  F  L  L  K  F  V  T  G  G  C  :  A  I  P  T  H  G  V  G  A  G  V  S  I  L  E  G  L  V  M  E  I  I  I  T  F  G  L  V  Y  T  V  F  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  L  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  M  V  S  G  N  F  E  G  F  W  I  Y  W  I  G  P  L  V  G  G  S  L  A  G  L  I  Y  T  N  V  F  M  T  Q  E  H  A  P  L  S  N  E  F  *  I  E  F  V  *  V  *  F  V  G  L  K  K  S  P  F  E  F  R  F  F  *  K  K  K  K  R  G  K  K  K  Q  Y  F  C  Y  F  F  L  C  F  F  F  P  Q  L  L  Y  C  F  S  S  S  L  V  C  S  C  T  S  I  I  F  W  *  D  V  L  V  M  M  L  *  F  D  E  I  I  R  N  H  P  L  :  K  R  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111485" stop="111213"/>
                    <exon start="111137" stop="110769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWYCLDTGKLTTNAALDPAGLVAIAVCHGFALFVAVSISANISGGHVNPAVTCGLTFGGHITFITGSFYMLAQLTGAAVACFLLKFVTGGCAIPTHGVGAGVSILEGLVMEIIITFGLVYTVFATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAMVSGNFEGFWIYWIGPLVGGSLAGLIYTNVFMTQEHAPLSNEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111819" stop="111541"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSCRIHLHTHLCLRRSWFRHCLRLITPIRSLFFILIVNEFCGSKFDLLLLTRNYAPHNMVNAYFEFISNRLIQVYKLYQNHILLLDPLLIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="123695" PGL_stop="115366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123695" e_stop="123609"/>
            <exon e_start="123510" e_stop="123447"/>
            <exon e_start="123357" e_stop="123216"/>
            <exon e_start="123003" e_stop="122813"/>
            <exon e_start="121283" e_stop="121246"/>
            <exon e_start="121169" e_stop="121090"/>
            <exon e_start="119915" e_stop="119848"/>
            <exon e_start="119180" e_stop="118847"/>
            <exon e_start="118624" e_stop="118512"/>
            <exon e_start="118412" e_stop="118347"/>
            <exon e_start="116934" e_stop="116844"/>
            <exon e_start="116733" e_stop="116666"/>
            <exon e_start="115939" e_stop="115902"/>
            <exon e_start="115762" e_stop="115366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.362" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.084" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123695" e_stop="123609" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.699">
            <gDNA_intron_boundary i_start="123608" i_stop="123511" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123510" e_stop="123447" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.854">
            <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123357" e_stop="123216" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123003" e_stop="122813" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121283" e_stop="121246" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.362" acc_prob="0.916">
            <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121169" e_stop="121090" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.084" acc_prob="0.900">
            <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119915" e_stop="119848" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="119847" i_stop="119181" i_length="667"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119180" e_stop="118847" e_length="334"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.897">
            <gDNA_intron_boundary i_start="118846" i_stop="118625" i_length="222"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118624" e_stop="118512" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118511" i_stop="118413" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="118412" e_stop="118347" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.928" acc_prob="0.738">
            <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="116934" e_stop="116844" e_length="91"/>
          </exon>
          <intron i_serial="11" don_prob="0.900" acc_prob="0.782">
            <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="116733" e_stop="116666" e_length="68"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="115939" e_stop="115902" e_length="38"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139"/>
          </intron>
          <exon e_serial="14" e_score="0.992">
            <gDNA_exon_boundary e_start="115762" e_stop="115366" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123695" stop="123609"/>
              <exon start="123510" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123654" stop="123609"/>
              <exon start="123510" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123490" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121090"/>
              <exon start="119915" stop="119882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123245" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121090"/>
              <exon start="119915" stop="119848"/>
              <exon start="119180" stop="118900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119180" stop="118847"/>
              <exon start="118624" stop="118512"/>
              <exon start="118412" stop="118347"/>
              <exon start="116934" stop="116844"/>
              <exon start="116733" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116690" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115756" stop="115385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115752" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCTTCCGGCAGGTGAATTTATTTTCAGCGCCACCGGCCGTCGGAAGAGATAAAACGAATGATAGCTTACCGGTCTTTTTTAAG : CGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG : AGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAG : GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG : GCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGG : AGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCA : TCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAG : GCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCAAAACTGAAGATTCTAATGATCGTGTTAAAATTGATAAAACCAACATACCACTCGTGAGTTACTCGGCTAAAGTATCTAAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAG : ATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGG : AGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTG : GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTC : AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG : TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG : AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAACATTATGGATTTCTT</gDNA_template>
            <first_frame> S  F  F  R  Q  V  N  L  F  S  A  P  P  A  V  G  R  D  K  T  N  D  S  L  P  V  F  F  K  :  R  *  S  R  *  E  V  H  K  G  S  C  S  T  E  A  H  T  T  L  P   : E  V  F  F  F  K  R  F  Q  L  *  L  A  D  A  Y  *  R  R  F  T  C  *  Y  G  P  E  K  A  E  N  G  C  *  N  M  E  T  C  F  Y  S  I  K  V  N  *  R :   W  F  R  *  *  E  A  *  F  W  R  S  S  A  R  N  *  M  H  C  F  F  V  *  V  N  S  S  E  G  S  A  G  *  *  R  H  *  S  R  R  T  S  N  T  F  S  *  *  *  I  T  F  S  S  S  E  A  F  S  Y  S  Q   : G  R  G  F  L  D  A  F  Y  Q  R  E  R  :  R  C  N  T  E  D  N  *  G  G  N  E  S  K  N  H  T  S  I  L  A  E  *  G  L  P  H :   R  R  R  Q  F  C  *  K  C  G  K  S  I  R  *  S  P  S  C  N  *  *   : G  S  *  K  P  I  S  *  L  L  S  L  C  I  T  S  I  G  H  T  S  *  I  G  *  Q  A  H  Q  L  P  E  L  S  S  W  K  Y  S  S  *  *  R  *  K  F  G  M  *  F  K  W  *  N  F  *  C  G  R  *  A  E  L  E  R  T  T  D  C  G  G  T  Q  N  *  R  F  *  *  S  C  *  N  *  *  N  Q  H  T  T  R  E  L  L  G  *  S  I  *  V  L  Y  L  R  F  K  G  F  *  T  I  R :   F  R  N  *  E  I  H  L  Y  *  T  Q  N  I  P  L  D  C  A  H  A  E  A  L  E  *  G  P  S  *  S  C  C  *  S  F  A   : E  C  L  T  K  S  N  *  C  F  G  E  P  T  C  V  Y  K  T  E  G  F   : G  V  H  E  R  F  S  S  K  S  S  C  C  I  C  S  C  G  S  N  W  W  *  R  Q  T  F  T  C  L  S :   G  D  H  Q  C  V  H  *  S  W  S  C  S  *  K  *  F  K  P  E  V  K   : V  A  C  H  R  N  E  C  A  A  Q  K  K  :  R  I  K  K  G  *  F  L  *  C  T  K  D  F  W  S  I  W  L  G  R  L  G  G  V  S  C  T  R  S  S  S  F  T  K  V  C  V  *  *  R  W  L  L  P  L  L  C  F  H  P  I  S  *  R  D  A  T  *  L  S  S  R  I  *  V  Q  *  F  V  F  F  C  Y  *  *  Y  V  L  V  V  S  C  V  E  S  P  L  Y  S  R  L  F  D  *  S  S  E  L  L  F  C  V  *  P  C  T  L  K  A  T  H  A  S  F  F  *  T  Q  E  I  H  V  L  H  *  A  T  L  W  I  S  </first_frame>
            <second_frame>  H  S  S  G  R  *  I  Y  F  Q  R  H  R  P  S  E  E  I  K  R  M  I  A  Y  R  S  F  L  S :   V  D  L  A  R  K  F  T  K  V  H  V  V  P  K  R  T  Q  H  F  Q  :  R  C  F  S  S  S  G  F  S  Y  S  S  R  T  H  I  E  G  G  L  L  V  D  M  D  R  K  K  Q  K  M  V  A  K  T  W  R  P  V  S  T  Q  S  R  S  T  E   : G  G  L  G  D  E  K  H  D  F  G  G  Q  V  Q  E  I  K  C  T  V  S  S  Y  E  S  T  V  Q  K  A  V  Q  V  S  E  G  I  D  L  E  G  R  A  T  P  S  A  D  D  E  S  L  S  A  A  Q  K  H  S  V  T  V  K  :  A  G  A  S  L  M  R  F  I  R  G  K  G :   G  A  T  Q  R  T  I  E  E  E  M  K  V  K  I  I  L  P  F  S  R  N  E  D  C  L   : I  V  E  G  N  S  A  E  S  V  A  R  A  S  D  R  V  Q  A  V  I  D  E  :  A  V  K  S  R  Y  L  D  Y  S  H  F  V  S  L  P  L  A  I  H  P  E  L  V  N  K  L  I  N  F  Q  N  S  V  L  G  N  T  V  V  N  E  D  E  N  L  E  C  D  S  S  G  K  T  S  D  A  E  G  E  Q  N  L  S  E  P  R  I  A  V  E  L  K  T  E  D  S  N  D  R  V  K  I  D  K  T  N  I  P  L  V  S  Y  S  A  K  V  S  K  S  S  T  S  D  S  K  A  S  K  L  L   : D  L  G  I  E  K  S  I  F  I  K  P  K  T  F  H  L  T  V  L  M  L  K  L  W  N  K  D  R  V  E  A  A  A  E  V  L  R  :  S  V  S  P  K  V  I  D  A  L  E  S  R  P  V  S  I  R  L  K  G  L  :  E  C  M  K  G  S  P  A  K  A  R  V  V  Y  A  P  V  E  V  I  G  G  E  D  R  L  L  R  A  C   : Q  V  I  T  N  A  F  I  E  A  G  L  V  L  E  N  D  L  N  Q  K  L  K  :  L  H  A  T  V  M  N  A  R  H  R  K  R :   G  S  K  K  V  D  S  F  D  A  R  K  I  F  G  Q  Y  G  L  E  D  W  G  E  Y  L  V  R  E  A  H  L  S  Q  R  F  V  F  D  D  D  G  Y  Y  H  C  C  A  S  I  P  F  P  E  E  M  Q  L  D  *  V  L  E  S  R  F  N  S  L  F  F  S  V  T  D  S  M  F  L  *  L  V  V  L  N  R  H  Y  T  L  G  C  L  I  E  A  Q  S  C  Y  S  V  C  D  H  V  P  *  K  P  H  M  P  L  F  F  E  L  K  K  F  M  S  C  I  K  Q  H  Y  G  F  L </second_frame>
            <third_frame>   I  L  P  A  G  E  F  I  F  S  A  T  G  R  R  K  R  *  N  E  *  *  L  T  G  L  F  *   : A  L  I  S  L  G  S  S  Q  R  F  M  *  Y  R  S  A  H  N  T  S  R :   G  V  F  L  Q  A  V  S  V  I  A  R  G  R  I  L  K  E  V  Y  L  L  I  W  T  G  K  S  R  K  W  L  L  K  H  G  D  L  F  L  L  N  Q  G  Q  L  K  :  V  V  *  V  M  R  S  M  I  L  E  V  K  C  K  K  L  N  A  L  F  L  R  M  S  Q  Q  F  R  R  Q  C  R  L  V  K  A  L  I  *  K  D  E  Q  H  L  Q  L  M  M  N  H  F  Q  Q  L  R  S  I  Q  L  Q  S  R :   Q  G  L  P  *  C  V  L  S  E  G  K   : E  V  Q  H  R  G  Q  L  R  R  K  *  K  *  K  S  Y  F  H  S  R  G  M  R  I  A  S  :  S  *  K  A  I  L  L  K  V  W  Q  E  H  Q  I  E  S  K  L  *  L  M  R :   Q  L  K  A  D  I  L  T  T  L  T  L  Y  H  F  H  W  P  Y  I  L  N  W  L  T  S  S  S  T  S  R  T  Q  F  L  E  I  Q  *  L  M  K  M  K  I  W  N  V  I  Q  V  V  K  L  L  M  R  K  V  S  R  T  *  A  N  H  G  L  R  W  N  S  K  L  K  I  L  M  I  V  L  K  L  I  K  P  T  Y  H  S  *  V  T  R  L  K  Y  L  S  P  L  P  Q  I  Q  R  L  L  N  Y  *  :  I  *  E  L  R  N  P  S  L  L  N  P  K  H  S  T  *  L  C  S  C  *  S  F  G  I  R  T  E  L  K  L  L  L  K  F  C  G :   V  S  H  Q  K  *  L  M  L  W  R  A  D  L  C  L  *  D  *  R  V  W :   S  A  *  K  V  L  Q  Q  K  L  V  L  Y  M  L  L  W  K  *  L  V  V  K  T  D  F  Y  V  P  V  :  R  *  S  P  M  R  S  L  K  L  V  L  F  L  K  M  I  *  T  R  S  *  S :   C  M  P  P  *  *  M  R  G  T  E  K   : E  D  Q  K  R  L  I  P  L  M  H  E  R  F  L  V  N  M  A  W  K  T  G  G  S  I  L  Y  A  K  L  I  F  H  K  G  L  C  L  M  T  M  A  I  T  I  A  V  L  P  S  H  F  L  K  R  C  N  L  I  E  F  *  N  L  G  S  I  V  C  F  F  L  L  L  I  V  C  S  C  S  *  L  C  *  I  A  I  I  L  *  V  V  *  L  K  L  R  V  V  I  L  C  V  T  M  Y  P  E  S  H  T  C  L  F  F  L  N  S  R  N  S  C  P  A  L  S  N  I  M  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123676" stop="123609"/>
                    <exon start="123510" stop="123447"/>
                    <exon start="123357" stop="123216"/>
                    <exon start="123003" stop="122813"/>
                    <exon start="121283" stop="121246"/>
                    <exon start="121169" stop="121090"/>
                    <exon start="119915" stop="119848"/>
                    <exon start="119180" stop="118847"/>
                    <exon start="118624" stop="118512"/>
                    <exon start="118412" stop="118347"/>
                    <exon start="116934" stop="116844"/>
                    <exon start="116733" stop="116666"/>
                    <exon start="115939" stop="115902"/>
                    <exon start="115762" stop="115582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYFQRHRPSEEIKRMIAYRSFLSVDLARKFTKVHVVPKRTQHFQRCFSSSGFSYSSRTHIEGGLLVDMDRKKQKMVAKTWRPVSTQSRSTEGGLGDEKHDFGGQVQEIKCTVSSYESTVQKAVQVSEGIDLEGRATPSADDESLSAAQKHSVTVKAGASLMRFIRGKGGATQRTIEEEMKVKIILPFSRNEDCLIVEGNSAESVARASDRVQAVIDEAVKSRYLDYSHFVSLPLAIHPELVNKLINFQNSVLGNTVVNEDENLECDSSGKTSDAEGEQNLSEPRIAVELKTEDSNDRVKIDKTNIPLVSYSAKVSKSSTSDSKASKLLDLGIEKSIFIKPKTFHLTVLMLKLWNKDRVEAAAEVLRSVSPKVIDALESRPVSIRLKGLECMKGSPAKARVVYAPVEVIGGEDRLLRACQVITNAFIEAGLVLENDLNQKLKLHATVMNARHRKRGSKKVDSFDARKIFGQYGLEDWGEYLVREAHLSQRFVFDDDGYYHCCASIPFPEEMQLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123627" e_stop="123595"/>
            <exon e_start="123519" e_stop="123447"/>
            <exon e_start="123357" e_stop="123216"/>
            <exon e_start="123003" e_stop="122813"/>
            <exon e_start="121283" e_stop="121090"/>
            <exon e_start="119915" e_stop="119848"/>
            <exon e_start="119180" e_stop="118847"/>
            <exon e_start="118624" e_stop="118512"/>
            <exon e_start="118412" e_stop="118347"/>
            <exon e_start="116934" e_stop="116844"/>
            <exon e_start="116733" e_stop="116666"/>
            <exon e_start="115939" e_stop="115902"/>
            <exon e_start="115762" e_stop="115366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.854" e_score="0.918"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="0.937"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="0.974"/>
          <exon-intron don_prob="0.084" acc_prob="0.900" e_score="0.964"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="0.941"/>
          <exon-intron don_prob="0.987" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123627" e_stop="123595" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123594" i_stop="123520" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="123519" e_stop="123447" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.854">
            <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.937">
            <gDNA_exon_boundary e_start="123357" e_stop="123216" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="123003" e_stop="122813" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="121283" e_stop="121090" e_length="194"/>
          </exon>
          <intron i_serial="5" don_prob="0.084" acc_prob="0.900">
            <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174"/>
          </intron>
          <exon e_serial="6" e_score="0.941">
            <gDNA_exon_boundary e_start="119915" e_stop="119848" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="119847" i_stop="119181" i_length="667"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119180" e_stop="118847" e_length="334"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.897">
            <gDNA_intron_boundary i_start="118846" i_stop="118625" i_length="222"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118624" e_stop="118512" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118511" i_stop="118413" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="118412" e_stop="118347" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.738">
            <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="116934" e_stop="116844" e_length="91"/>
          </exon>
          <intron i_serial="10" don_prob="0.900" acc_prob="0.782">
            <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="116733" e_stop="116666" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="115939" e_stop="115902" e_length="38"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139"/>
          </intron>
          <exon e_serial="13" e_score="0.992">
            <gDNA_exon_boundary e_start="115762" e_stop="115366" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123627" stop="123595"/>
              <exon start="123519" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121090"/>
              <exon start="119915" stop="119848"/>
              <exon start="119180" stop="119059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119180" stop="118847"/>
              <exon start="118624" stop="118512"/>
              <exon start="118412" stop="118347"/>
              <exon start="116934" stop="116844"/>
              <exon start="116733" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116690" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115756" stop="115385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115752" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACCGGTCTTTTTTAAGGTGCACACTTACCA : CTTCCACAGCGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG : AGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAG : GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG : GCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGGGTATGACTTTCTGTGCAGATTCTTGCTTATGCTAAAAACGAGGGGCTAATACGTTGCTTTGATATTCTGCATATAGAGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCA : TCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAG : GCAGTTAAAAGCCGATATCTTGACTACTCTCACTTTGTATCACTTCCATTGGCCATACATCCTGAATTGGTTAACAAGCTCATCAACTTCCAGAACTCAGTTCTTGGAAATACAGTAGTTAATGAAGATGAAAATTTGGAATGTGATTCAAGTGGTAAAACTTCTGATGCGGAAGGTGAGCAGAACTTGAGCGAACCACGGATTGCGGTGGAACTCAAAACTGAAGATTCTAATGATCGTGTTAAAATTGATAAAACCAACATACCACTCGTGAGTTACTCGGCTAAAGTATCTAAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAG : ATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGG : AGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTG : GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTC : AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG : TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG : AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAACATTATGGATTTCTT</gDNA_template>
            <first_frame> L  T  G  L  F  *  G  A  H  L  P  :  L  P  Q  R  *  S  R  *  E  V  H  K  G  S  C  S  T  E  A  H  T  T  L  P   : E  V  F  F  F  K  R  F  Q  L  *  L  A  D  A  Y  *  R  R  F  T  C  *  Y  G  P  E  K  A  E  N  G  C  *  N  M  E  T  C  F  Y  S  I  K  V  N  *  R :   W  F  R  *  *  E  A  *  F  W  R  S  S  A  R  N  *  M  H  C  F  F  V  *  V  N  S  S  E  G  S  A  G  *  *  R  H  *  S  R  R  T  S  N  T  F  S  *  *  *  I  T  F  S  S  S  E  A  F  S  Y  S  Q   : G  R  G  F  L  D  A  F  Y  Q  R  E  R  V  *  L  S  V  Q  I  L  A  Y  A  K  N  E  G  L  I  R  C  F  D  I  L  H  I  E  V  Q  H  R  G  Q  L  R  R  K  *  K  *  K  S  Y  F  H  S  R  G  M  R  I  A  S  :  S  *  K  A  I  L  L  K  V  W  Q  E  H  Q  I  E  S  K  L  *  L  M  R :   Q  L  K  A  D  I  L  T  T  L  T  L  Y  H  F  H  W  P  Y  I  L  N  W  L  T  S  S  S  T  S  R  T  Q  F  L  E  I  Q  *  L  M  K  M  K  I  W  N  V  I  Q  V  V  K  L  L  M  R  K  V  S  R  T  *  A  N  H  G  L  R  W  N  S  K  L  K  I  L  M  I  V  L  K  L  I  K  P  T  Y  H  S  *  V  T  R  L  K  Y  L  S  P  L  P  Q  I  Q  R  L  L  N  Y  *  :  I  *  E  L  R  N  P  S  L  L  N  P  K  H  S  T  *  L  C  S  C  *  S  F  G  I  R  T  E  L  K  L  L  L  K  F  C  G :   V  S  H  Q  K  *  L  M  L  W  R  A  D  L  C  L  *  D  *  R  V  W :   S  A  *  K  V  L  Q  Q  K  L  V  L  Y  M  L  L  W  K  *  L  V  V  K  T  D  F  Y  V  P  V  :  R  *  S  P  M  R  S  L  K  L  V  L  F  L  K  M  I  *  T  R  S  *  S :   C  M  P  P  *  *  M  R  G  T  E  K   : E  D  Q  K  R  L  I  P  L  M  H  E  R  F  L  V  N  M  A  W  K  T  G  G  S  I  L  Y  A  K  L  I  F  H  K  G  L  C  L  M  T  M  A  I  T  I  A  V  L  P  S  H  F  L  K  R  C  N  L  I  E  F  *  N  L  G  S  I  V  C  F  F  L  L  L  I  V  C  S  C  S  *  L  C  *  I  A  I  I  L  *  V  V  *  L  K  L  R  V  V  I  L  C  V  T  M  Y  P  E  S  H  T  C  L  F  F  L  N  S  R  N  S  C  P  A  L  S  N  I  M  D  F   </first_frame>
            <second_frame>  L  P  V  F  F  K  V  H  T  Y  H :   F  H  S  V  D  L  A  R  K  F  T  K  V  H  V  V  P  K  R  T  Q  H  F  Q  :  R  C  F  S  S  S  G  F  S  Y  S  S  R  T  H  I  E  G  G  L  L  V  D  M  D  R  K  K  Q  K  M  V  A  K  T  W  R  P  V  S  T  Q  S  R  S  T  E   : G  G  L  G  D  E  K  H  D  F  G  G  Q  V  Q  E  I  K  C  T  V  S  S  Y  E  S  T  V  Q  K  A  V  Q  V  S  E  G  I  D  L  E  G  R  A  T  P  S  A  D  D  E  S  L  S  A  A  Q  K  H  S  V  T  V  K  :  A  G  A  S  L  M  R  F  I  R  G  K  G  Y  D  F  L  C  R  F  L  L  M  L  K  T  R  G  *  Y  V  A  L  I  F  C  I  *  R  C  N  T  E  D  N  *  G  G  N  E  S  K  N  H  T  S  I  L  A  E  *  G  L  P  H :   R  R  R  Q  F  C  *  K  C  G  K  S  I  R  *  S  P  S  C  N  *  *   : G  S  *  K  P  I  S  *  L  L  S  L  C  I  T  S  I  G  H  T  S  *  I  G  *  Q  A  H  Q  L  P  E  L  S  S  W  K  Y  S  S  *  *  R  *  K  F  G  M  *  F  K  W  *  N  F  *  C  G  R  *  A  E  L  E  R  T  T  D  C  G  G  T  Q  N  *  R  F  *  *  S  C  *  N  *  *  N  Q  H  T  T  R  E  L  L  G  *  S  I  *  V  L  Y  L  R  F  K  G  F  *  T  I  R :   F  R  N  *  E  I  H  L  Y  *  T  Q  N  I  P  L  D  C  A  H  A  E  A  L  E  *  G  P  S  *  S  C  C  *  S  F  A   : E  C  L  T  K  S  N  *  C  F  G  E  P  T  C  V  Y  K  T  E  G  F   : G  V  H  E  R  F  S  S  K  S  S  C  C  I  C  S  C  G  S  N  W  W  *  R  Q  T  F  T  C  L  S :   G  D  H  Q  C  V  H  *  S  W  S  C  S  *  K  *  F  K  P  E  V  K   : V  A  C  H  R  N  E  C  A  A  Q  K  K  :  R  I  K  K  G  *  F  L  *  C  T  K  D  F  W  S  I  W  L  G  R  L  G  G  V  S  C  T  R  S  S  S  F  T  K  V  C  V  *  *  R  W  L  L  P  L  L  C  F  H  P  I  S  *  R  D  A  T  *  L  S  S  R  I  *  V  Q  *  F  V  F  F  C  Y  *  *  Y  V  L  V  V  S  C  V  E  S  P  L  Y  S  R  L  F  D  *  S  S  E  L  L  F  C  V  *  P  C  T  L  K  A  T  H  A  S  F  F  *  T  Q  E  I  H  V  L  H  *  A  T  L  W  I  S  </second_frame>
            <third_frame>   Y  R  S  F  L  R  C  T  L  T   : T  S  T  A  L  I  S  L  G  S  S  Q  R  F  M  *  Y  R  S  A  H  N  T  S  R :   G  V  F  L  Q  A  V  S  V  I  A  R  G  R  I  L  K  E  V  Y  L  L  I  W  T  G  K  S  R  K  W  L  L  K  H  G  D  L  F  L  L  N  Q  G  Q  L  K  :  V  V  *  V  M  R  S  M  I  L  E  V  K  C  K  K  L  N  A  L  F  L  R  M  S  Q  Q  F  R  R  Q  C  R  L  V  K  A  L  I  *  K  D  E  Q  H  L  Q  L  M  M  N  H  F  Q  Q  L  R  S  I  Q  L  Q  S  R :   Q  G  L  P  *  C  V  L  S  E  G  K  G  M  T  F  C  A  D  S  C  L  C  *  K  R  G  A  N  T  L  L  *  Y  S  A  Y  R  G  A  T  Q  R  T  I  E  E  E  M  K  V  K  I  I  L  P  F  S  R  N  E  D  C  L   : I  V  E  G  N  S  A  E  S  V  A  R  A  S  D  R  V  Q  A  V  I  D  E  :  A  V  K  S  R  Y  L  D  Y  S  H  F  V  S  L  P  L  A  I  H  P  E  L  V  N  K  L  I  N  F  Q  N  S  V  L  G  N  T  V  V  N  E  D  E  N  L  E  C  D  S  S  G  K  T  S  D  A  E  G  E  Q  N  L  S  E  P  R  I  A  V  E  L  K  T  E  D  S  N  D  R  V  K  I  D  K  T  N  I  P  L  V  S  Y  S  A  K  V  S  K  S  S  T  S  D  S  K  A  S  K  L  L   : D  L  G  I  E  K  S  I  F  I  K  P  K  T  F  H  L  T  V  L  M  L  K  L  W  N  K  D  R  V  E  A  A  A  E  V  L  R  :  S  V  S  P  K  V  I  D  A  L  E  S  R  P  V  S  I  R  L  K  G  L  :  E  C  M  K  G  S  P  A  K  A  R  V  V  Y  A  P  V  E  V  I  G  G  E  D  R  L  L  R  A  C   : Q  V  I  T  N  A  F  I  E  A  G  L  V  L  E  N  D  L  N  Q  K  L  K  :  L  H  A  T  V  M  N  A  R  H  R  K  R :   G  S  K  K  V  D  S  F  D  A  R  K  I  F  G  Q  Y  G  L  E  D  W  G  E  Y  L  V  R  E  A  H  L  S  Q  R  F  V  F  D  D  D  G  Y  Y  H  C  C  A  S  I  P  F  P  E  E  M  Q  L  D  *  V  L  E  S  R  F  N  S  L  F  F  S  V  T  D  S  M  F  L  *  L  V  V  L  N  R  H  Y  T  L  G  C  L  I  E  A  Q  S  C  Y  S  V  C  D  H  V  P  *  K  P  H  M  P  L  F  F  E  L  K  K  F  M  S  C  I  K  Q  H  Y  G  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121183" stop="121090"/>
                    <exon start="119915" stop="119848"/>
                    <exon start="119180" stop="118847"/>
                    <exon start="118624" stop="118512"/>
                    <exon start="118412" stop="118347"/>
                    <exon start="116934" stop="116844"/>
                    <exon start="116733" stop="116666"/>
                    <exon start="115939" stop="115902"/>
                    <exon start="115762" stop="115582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAYRGATQRTIEEEMKVKIILPFSRNEDCLIVEGNSAESVARASDRVQAVIDEAVKSRYLDYSHFVSLPLAIHPELVNKLINFQNSVLGNTVVNEDENLECDSSGKTSDAEGEQNLSEPRIAVELKTEDSNDRVKIDKTNIPLVSYSAKVSKSSTSDSKASKLLDLGIEKSIFIKPKTFHLTVLMLKLWNKDRVEAAAEVLRSVSPKVIDALESRPVSIRLKGLECMKGSPAKARVVYAPVEVIGGEDRLLRACQVITNAFIEAGLVLENDLNQKLKLHATVMNARHRKRGSKKVDSFDARKIFGQYGLEDWGEYLVREAHLSQRFVFDDDGYYHCCASIPFPEEMQLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123626" stop="123595"/>
                    <exon start="123519" stop="123447"/>
                    <exon start="123357" stop="123216"/>
                    <exon start="123003" stop="122813"/>
                    <exon start="121283" stop="121197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPVFFKVHTYHFHSVDLARKFTKVHVVPKRTQHFQRCFSSSGFSYSSRTHIEGGLLVDMDRKKQKMVAKTWRPVSTQSRSTEGGLGDEKHDFGGQVQEIKCTVSSYESTVQKAVQVSEGIDLEGRATPSADDESLSAAQKHSVTVKAGASLMRFIRGKGYDFLCRFLLMLKTRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116786" e_stop="116666"/>
            <exon e_start="115939" e_stop="115902"/>
            <exon e_start="115762" e_stop="115366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116786" e_stop="116666" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115939" e_stop="115902" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="115762" e_stop="115366" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116786" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116690" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115762" stop="115366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115756" stop="115385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115752" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTTCTAAGGGAATTTTTTACCTGCATTTGTTATTCCTTAGCCTTTCTAGAGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG : TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG : AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAACATTATGGATTTCTT</gDNA_template>
            <first_frame> A  I  S  K  G  I  F  Y  L  H  L  L  F  L  S  L  S  R  G  D  H  Q  C  V  H  *  S  W  S  C  S  *  K  *  F  K  P  E  V  K   : V  A  C  H  R  N  E  C  A  A  Q  K  K  :  R  I  K  K  G  *  F  L  *  C  T  K  D  F  W  S  I  W  L  G  R  L  G  G  V  S  C  T  R  S  S  S  F  T  K  V  C  V  *  *  R  W  L  L  P  L  L  C  F  H  P  I  S  *  R  D  A  T  *  L  S  S  R  I  *  V  Q  *  F  V  F  F  C  Y  *  *  Y  V  L  V  V  S  C  V  E  S  P  L  Y  S  R  L  F  D  *  S  S  E  L  L  F  C  V  *  P  C  T  L  K  A  T  H  A  S  F  F  *  T  Q  E  I  H  V  L  H  *  A  T  L  W  I  S  </first_frame>
            <second_frame>  L  F  L  R  E  F  F  T  C  I  C  Y  S  L  A  F  L  E  V  I  T  N  A  F  I  E  A  G  L  V  L  E  N  D  L  N  Q  K  L  K  :  L  H  A  T  V  M  N  A  R  H  R  K  R :   G  S  K  K  V  D  S  F  D  A  R  K  I  F  G  Q  Y  G  L  E  D  W  G  E  Y  L  V  R  E  A  H  L  S  Q  R  F  V  F  D  D  D  G  Y  Y  H  C  C  A  S  I  P  F  P  E  E  M  Q  L  D  *  V  L  E  S  R  F  N  S  L  F  F  S  V  T  D  S  M  F  L  *  L  V  V  L  N  R  H  Y  T  L  G  C  L  I  E  A  Q  S  C  Y  S  V  C  D  H  V  P  *  K  P  H  M  P  L  F  F  E  L  K  K  F  M  S  C  I  K  Q  H  Y  G  F  L </second_frame>
            <third_frame>   Y  F  *  G  N  F  L  P  A  F  V  I  P  *  P  F  *  R  *  S  P  M  R  S  L  K  L  V  L  F  L  K  M  I  *  T  R  S  *  S :   C  M  P  P  *  *  M  R  G  T  E  K   : E  D  Q  K  R  L  I  P  L  M  H  E  R  F  L  V  N  M  A  W  K  T  G  G  S  I  L  Y  A  K  L  I  F  H  K  G  L  C  L  M  T  M  A  I  T  I  A  V  L  P  S  H  F  L  K  R  C  N  L  I  E  F  *  N  L  G  S  I  V  C  F  F  L  L  L  I  V  C  S  C  S  *  L  C  *  I  A  I  I  L  *  V  V  *  L  K  L  R  V  V  I  L  C  V  T  M  Y  P  E  S  H  T  C  L  F  F  L  N  S  R  N  S  C  P  A  L  S  N  I  M  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116785" stop="116666"/>
                    <exon start="115939" stop="115902"/>
                    <exon start="115762" stop="115582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLREFFTCICYSLAFLEVITNAFIEAGLVLENDLNQKLKLHATVMNARHRKRGSKKVDSFDARKIFGQYGLEDWGEYLVREAHLSQRFVFDDDGYYHCCASIPFPEEMQLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="118886" e_stop="118847"/>
            <exon e_start="118624" e_stop="118512"/>
            <exon e_start="118412" e_stop="118347"/>
            <exon e_start="116934" e_stop="116844"/>
            <exon e_start="116733" e_stop="116666"/>
            <exon e_start="115939" e_stop="115902"/>
            <exon e_start="115768" e_stop="115380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.897" e_score="0.950"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="0.956"/>
          <exon-intron don_prob="0.928" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.782" e_score="0.989"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.876" e_score="0.974"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="118886" e_stop="118847" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.897">
            <gDNA_intron_boundary i_start="118846" i_stop="118625" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="118624" e_stop="118512" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118511" i_stop="118413" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118412" e_stop="118347" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.738">
            <gDNA_intron_boundary i_start="118346" i_stop="116935" i_length="1412"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="116934" e_stop="116844" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.782">
            <gDNA_intron_boundary i_start="116843" i_stop="116734" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116733" e_stop="116666" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="116665" i_stop="115940" i_length="726"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="115939" e_stop="115902" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.876">
            <gDNA_intron_boundary i_start="115901" i_stop="115769" i_length="133"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="115768" e_stop="115380" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118886" stop="118847"/>
              <exon start="118624" stop="118512"/>
              <exon start="118412" stop="118347"/>
              <exon start="116934" stop="116844"/>
              <exon start="116733" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115768" stop="115414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118400" stop="118347"/>
              <exon start="116934" stop="116844"/>
              <exon start="116733" stop="116666"/>
              <exon start="115939" stop="115902"/>
              <exon start="115768" stop="115414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423485" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115756" stop="115385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115752" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTCCTCTACCTCAGATTCAAAGGCTTCTAAACTATTAG : ATTTAGGAATTGAGAAATCCATCTTTATTAAACCCAAAACATTCCACTTGACTGTGCTCATGCTGAAGCTTTGGAATAAGGACCGAGTTGAAGCTGCTGCTGAAGTTTTGCGG : AGTGTCTCACCAAAAGTAATTGATGCTTTGGAGAGCCGACCTGTGTCTATAAGACTGAAGGGTTTG : GAGTGCATGAAAGGTTCTCCAGCAAAAGCTCGTGTTGTATATGCTCCTGTGGAAGTAATTGGTGGTGAAGACAGACTTTTACGTGCCTGTC : AGGTGATCACCAATGCGTTCATTGAAGCTGGTCTTGTTCTTGAAAATGATTTAAACCAGAAGTTAAAG : TTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG : CAACAGAGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</gDNA_template>
            <first_frame> K  S  S  T  S  D  S  K  A  S  K  L  L   : D  L  G  I  E  K  S  I  F  I  K  P  K  T  F  H  L  T  V  L  M  L  K  L  W  N  K  D  R  V  E  A  A  A  E  V  L  R  :  S  V  S  P  K  V  I  D  A  L  E  S  R  P  V  S  I  R  L  K  G  L  :  E  C  M  K  G  S  P  A  K  A  R  V  V  Y  A  P  V  E  V  I  G  G  E  D  R  L  L  R  A  C   : Q  V  I  T  N  A  F  I  E  A  G  L  V  L  E  N  D  L  N  Q  K  L  K  :  L  H  A  T  V  M  N  A  R  H  R  K  S :   N  R  G  S  K  K  V  D  S  F  D  A  R  K  I  F  G  Q  Y  G  L  E  D  W  G  E  Y  L  V  R  E  A  H  L  S  Q  R  F  V  F  D  D  D  G  Y  Y  H  C  C  A  S  I  P  F  P  E  E  M  Q  L  D  *  V  L  E  S  R  F  N  S  L  F  F  S  V  T  D  S  M  F  L  *  L  V  V  L  N  R  H  Y  T  L  G  C  L  I  E  A  Q  S  C  Y  S  V  C  D  H  V  P  *  K  P  H  M  P  L  F  F  E  L  K  K  F  M  S  C  I  K  Q  </first_frame>
            <second_frame>  S  P  L  P  Q  I  Q  R  L  L  N  Y  *  :  I  *  E  L  R  N  P  S  L  L  N  P  K  H  S  T  *  L  C  S  C  *  S  F  G  I  R  T  E  L  K  L  L  L  K  F  C  G :   V  S  H  Q  K  *  L  M  L  W  R  A  D  L  C  L  *  D  *  R  V  W :   S  A  *  K  V  L  Q  Q  K  L  V  L  Y  M  L  L  W  K  *  L  V  V  K  T  D  F  Y  V  P  V  :  R  *  S  P  M  R  S  L  K  L  V  L  F  L  K  M  I  *  T  R  S  *  S :   C  M  P  P  *  *  M  R  G  T  E  K   : A  T  E  D  Q  K  R  L  I  P  L  M  H  E  R  F  L  V  N  M  A  W  K  T  G  G  S  I  L  Y  A  K  L  I  F  H  K  G  L  C  L  M  T  M  A  I  T  I  A  V  L  P  S  H  F  L  K  R  C  N  L  I  E  F  *  N  L  G  S  I  V  C  F  F  L  L  L  I  V  C  S  C  S  *  L  C  *  I  A  I  I  L  *  V  V  *  L  K  L  R  V  V  I  L  C  V  T  M  Y  P  E  S  H  T  C  L  F  F  L  N  S  R  N  S  C  P  A  L  S  N </second_frame>
            <third_frame>   V  L  Y  L  R  F  K  G  F  *  T  I  R :   F  R  N  *  E  I  H  L  Y  *  T  Q  N  I  P  L  D  C  A  H  A  E  A  L  E  *  G  P  S  *  S  C  C  *  S  F  A   : E  C  L  T  K  S  N  *  C  F  G  E  P  T  C  V  Y  K  T  E  G  F   : G  V  H  E  R  F  S  S  K  S  S  C  C  I  C  S  C  G  S  N  W  W  *  R  Q  T  F  T  C  L  S :   G  D  H  Q  C  V  H  *  S  W  S  C  S  *  K  *  F  K  P  E  V  K   : V  A  C  H  R  N  E  C  A  A  Q  K  K  :  Q  Q  R  I  K  K  G  *  F  L  *  C  T  K  D  F  W  S  I  W  L  G  R  L  G  G  V  S  C  T  R  S  S  S  F  T  K  V  C  V  *  *  R  W  L  L  P  L  L  C  F  H  P  I  S  *  R  D  A  T  *  L  S  S  R  I  *  V  Q  *  F  V  F  F  C  Y  *  *  Y  V  L  V  V  S  C  V  E  S  P  L  Y  S  R  L  F  D  *  S  S  E  L  L  F  C  V  *  P  C  T  L  K  A  T  H  A  S  F  F  *  T  Q  E  I  H  V  L  H  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118886" stop="118847"/>
                    <exon start="118624" stop="118512"/>
                    <exon start="118412" stop="118347"/>
                    <exon start="116934" stop="116844"/>
                    <exon start="116733" stop="116666"/>
                    <exon start="115939" stop="115902"/>
                    <exon start="115768" stop="115582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSTSDSKASKLLDLGIEKSIFIKPKTFHLTVLMLKLWNKDRVEAAAEVLRSVSPKVIDALESRPVSIRLKGLECMKGSPAKARVVYAPVEVIGGEDRLLRACQVITNAFIEAGLVLENDLNQKLKLHATVMNARHRKSNRGSKKVDSFDARKIFGQYGLEDWGEYLVREAHLSQRFVFDDDGYYHCCASIPFPEEMQLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="123695" e_stop="123609"/>
            <exon e_start="123510" e_stop="123447"/>
            <exon e_start="123357" e_stop="123216"/>
            <exon e_start="123003" e_stop="122813"/>
            <exon e_start="121283" e_stop="121246"/>
            <exon e_start="121169" e_stop="121090"/>
            <exon e_start="119915" e_stop="119608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="0.990"/>
          <exon-intron don_prob="0.362" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.084" acc_prob="0.900" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123695" e_stop="123609" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.699">
            <gDNA_intron_boundary i_start="123608" i_stop="123511" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123510" e_stop="123447" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.854">
            <gDNA_intron_boundary i_start="123446" i_stop="123358" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123357" e_stop="123216" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="123215" i_stop="123004" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="123003" e_stop="122813" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="122812" i_stop="121284" i_length="1529"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121283" e_stop="121246" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.362" acc_prob="0.916">
            <gDNA_intron_boundary i_start="121245" i_stop="121170" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121169" e_stop="121090" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.084" acc_prob="0.900">
            <gDNA_intron_boundary i_start="121089" i_stop="119916" i_length="1174"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="119915" e_stop="119608" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123695" stop="123609"/>
              <exon start="123510" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123654" stop="123609"/>
              <exon start="123510" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123490" stop="123447"/>
              <exon start="123357" stop="123216"/>
              <exon start="123003" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121090"/>
              <exon start="119915" stop="119882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122914" stop="122813"/>
              <exon start="121283" stop="121246"/>
              <exon start="121169" stop="121090"/>
              <exon start="119915" stop="119608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCTTCCGGCAGGTGAATTTATTTTCAGCGCCACCGGCCGTCGGAAGAGATAAAACGAATGATAGCTTACCGGTCTTTTTTAAG : CGTTGATCTCGCTAGGAAGTTCACAAAGGTTCATGTAGTACCGAAGCGCACACAACACTTCCAG : AGGTGTTTTTCTTCAAGCGGTTTCAGTTATAGCTCGCGGACGCATATTGAAGGAGGTTTACTTGTTGATATGGACCGGAAAAAGCAGAAAATGGTTGCTAAAACATGGAGACCTGTTTCTACTCAATCAAGGTCAACTGAAG : GTGGTTTAGGTGATGAGAAGCATGATTTTGGAGGTCAAGTGCAAGAAATTAAATGCACTGTTTCTTCGTATGAGTCAACAGTTCAGAAGGCAGTGCAGGTTAGTGAAGGCATTGATCTAGAAGGACGAGCAACACCTTCAGCTGATGATGAATCACTTTCAGCAGCTCAGAAGCATTCAGTTACAGTCAAG : GCAGGGGCTTCCTTGATGCGTTTTATCAGAGGGAAAGG : AGGTGCAACACAGAGGACAATTGAGGAGGAAATGAAAGTAAAAATCATACTTCCATTCTCGCGGAATGAGGATTGCCTCA : TCGTAGAAGGCAATTCTGCTGAAAGTGTGGCAAGAGCATCAGATAGAGTCCAAGCTGTAATTGATGAGGTTTGCACCAACATTTTTTTTTTCCGTGCTAGAAGACAAATAAGGCATAAAAGGAATATTACTTTTTTATCTGTCGAACTTTTAGAGCCTATAAACTGTGGTAACATGTAAGTATCTGTTTTTGTTAAAAGCTTTTAATTTTAATTTTAATTTTTTTACGTCTAAAAATGGTCATGCTAATGATTATTGATGAAATGTAGCTGCTGCTTCATAGCACCAACACAAAGTACCCACAATATA</gDNA_template>
            <first_frame> S  F  F  R  Q  V  N  L  F  S  A  P  P  A  V  G  R  D  K  T  N  D  S  L  P  V  F  F  K  :  R  *  S  R  *  E  V  H  K  G  S  C  S  T  E  A  H  T  T  L  P   : E  V  F  F  F  K  R  F  Q  L  *  L  A  D  A  Y  *  R  R  F  T  C  *  Y  G  P  E  K  A  E  N  G  C  *  N  M  E  T  C  F  Y  S  I  K  V  N  *  R :   W  F  R  *  *  E  A  *  F  W  R  S  S  A  R  N  *  M  H  C  F  F  V  *  V  N  S  S  E  G  S  A  G  *  *  R  H  *  S  R  R  T  S  N  T  F  S  *  *  *  I  T  F  S  S  S  E  A  F  S  Y  S  Q   : G  R  G  F  L  D  A  F  Y  Q  R  E  R  :  R  C  N  T  E  D  N  *  G  G  N  E  S  K  N  H  T  S  I  L  A  E  *  G  L  P  H :   R  R  R  Q  F  C  *  K  C  G  K  S  I  R  *  S  P  S  C  N  *  *  G  L  H  Q  H  F  F  F  P  C  *  K  T  N  K  A  *  K  E  Y  Y  F  F  I  C  R  T  F  R  A  Y  K  L  W  *  H  V  S  I  C  F  C  *  K  L  L  I  L  I  L  I  F  L  R  L  K  M  V  M  L  M  I  I  D  E  M  *  L  L  L  H  S  T  N  T  K  Y  P  Q  Y  </first_frame>
            <second_frame>  H  S  S  G  R  *  I  Y  F  Q  R  H  R  P  S  E  E  I  K  R  M  I  A  Y  R  S  F  L  S :   V  D  L  A  R  K  F  T  K  V  H  V  V  P  K  R  T  Q  H  F  Q  :  R  C  F  S  S  S  G  F  S  Y  S  S  R  T  H  I  E  G  G  L  L  V  D  M  D  R  K  K  Q  K  M  V  A  K  T  W  R  P  V  S  T  Q  S  R  S  T  E   : G  G  L  G  D  E  K  H  D  F  G  G  Q  V  Q  E  I  K  C  T  V  S  S  Y  E  S  T  V  Q  K  A  V  Q  V  S  E  G  I  D  L  E  G  R  A  T  P  S  A  D  D  E  S  L  S  A  A  Q  K  H  S  V  T  V  K  :  A  G  A  S  L  M  R  F  I  R  G  K  G :   G  A  T  Q  R  T  I  E  E  E  M  K  V  K  I  I  L  P  F  S  R  N  E  D  C  L   : I  V  E  G  N  S  A  E  S  V  A  R  A  S  D  R  V  Q  A  V  I  D  E  V  C  T  N  I  F  F  F  R  A  R  R  Q  I  R  H  K  R  N  I  T  F  L  S  V  E  L  L  E  P  I  N  C  G  N  M  *  V  S  V  F  V  K  S  F  *  F  *  F  *  F  F  Y  V  *  K  W  S  C  *  *  L  L  M  K  C  S  C  C  F  I  A  P  T  Q  S  T  H  N  I </second_frame>
            <third_frame>   I  L  P  A  G  E  F  I  F  S  A  T  G  R  R  K  R  *  N  E  *  *  L  T  G  L  F  *   : A  L  I  S  L  G  S  S  Q  R  F  M  *  Y  R  S  A  H  N  T  S  R :   G  V  F  L  Q  A  V  S  V  I  A  R  G  R  I  L  K  E  V  Y  L  L  I  W  T  G  K  S  R  K  W  L  L  K  H  G  D  L  F  L  L  N  Q  G  Q  L  K  :  V  V  *  V  M  R  S  M  I  L  E  V  K  C  K  K  L  N  A  L  F  L  R  M  S  Q  Q  F  R  R  Q  C  R  L  V  K  A  L  I  *  K  D  E  Q  H  L  Q  L  M  M  N  H  F  Q  Q  L  R  S  I  Q  L  Q  S  R :   Q  G  L  P  *  C  V  L  S  E  G  K   : E  V  Q  H  R  G  Q  L  R  R  K  *  K  *  K  S  Y  F  H  S  R  G  M  R  I  A  S  :  S  *  K  A  I  L  L  K  V  W  Q  E  H  Q  I  E  S  K  L  *  L  M  R  F  A  P  T  F  F  F  S  V  L  E  D  K  *  G  I  K  G  I  L  L  F  Y  L  S  N  F  *  S  L  *  T  V  V  T  C  K  Y  L  F  L  L  K  A  F  N  F  N  F  N  F  F  T  S  K  N  G  H  A  N  D  Y  *  *  N  V  A  A  A  S  *  H  Q  H  K  V  P  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123676" stop="123609"/>
                    <exon start="123510" stop="123447"/>
                    <exon start="123357" stop="123216"/>
                    <exon start="123003" stop="122813"/>
                    <exon start="121283" stop="121246"/>
                    <exon start="121169" stop="121090"/>
                    <exon start="119915" stop="119737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYFQRHRPSEEIKRMIAYRSFLSVDLARKFTKVHVVPKRTQHFQRCFSSSGFSYSSRTHIEGGLLVDMDRKKQKMVAKTWRPVSTQSRSTEGGLGDEKHDFGGQVQEIKCTVSSYESTVQKAVQVSEGIDLEGRATPSADDESLSAAQKHSVTVKAGASLMRFIRGKGGATQRTIEEEMKVKIILPFSRNEDCLIVEGNSAESVARASDRVQAVIDEVCTNIFFFRARRQIRHKRNITFLSVELLEPINCGNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="115940" e_stop="115902"/>
            <exon e_start="115762" e_stop="115380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115940" e_stop="115902" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115901" i_stop="115763" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115762" e_stop="115380" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115940" stop="115902"/>
              <exon start="115762" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115756" stop="115385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115752" stop="115380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCATGCCACCGTAATGAATGCGCGGCACAGAAAAAG : AGGATCAAAAAAGGTTGATTCCTTTGATGCACGAAAGATTTTTGGTCAATATGGCTTGGAAGACTGGGGGGAGTATCTTGTACGCGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACGATGGCTATTACCATTGCTGTGCTTCCATCCCATTTCCTGAAGAGATGCAACTTGATTGAGTTCTAGAATCTAGGTTCAATAGTTTGTTTTTTTCTGTTACTGATAGTATGTTCTTGTAGTTAGTTGTGTTGAATCGCCATTATACTCTAGGTTGTTTGATTGAAGCTCAGAGTTGTTATTCTGTGTGTGACCATGTACCCTGAAAGCCACACATGCCTCTTTTTTTTGAACTCAAGAAATTCATGTCCTGCATTAAGCAAC</gDNA_template>
            <first_frame> V  A  C  H  R  N  E  C  A  A  Q  K  K  :  R  I  K  K  G  *  F  L  *  C  T  K  D  F  W  S  I  W  L  G  R  L  G  G  V  S  C  T  R  S  S  S  F  T  K  V  C  V  *  *  R  W  L  L  P  L  L  C  F  H  P  I  S  *  R  D  A  T  *  L  S  S  R  I  *  V  Q  *  F  V  F  F  C  Y  *  *  Y  V  L  V  V  S  C  V  E  S  P  L  Y  S  R  L  F  D  *  S  S  E  L  L  F  C  V  *  P  C  T  L  K  A  T  H  A  S  F  F  *  T  Q  E  I  H  V  L  H  *  A   </first_frame>
            <second_frame>  L  H  A  T  V  M  N  A  R  H  R  K  R :   G  S  K  K  V  D  S  F  D  A  R  K  I  F  G  Q  Y  G  L  E  D  W  G  E  Y  L  V  R  E  A  H  L  S  Q  R  F  V  F  D  D  D  G  Y  Y  H  C  C  A  S  I  P  F  P  E  E  M  Q  L  D  *  V  L  E  S  R  F  N  S  L  F  F  S  V  T  D  S  M  F  L  *  L  V  V  L  N  R  H  Y  T  L  G  C  L  I  E  A  Q  S  C  Y  S  V  C  D  H  V  P  *  K  P  H  M  P  L  F  F  E  L  K  K  F  M  S  C  I  K  Q  </second_frame>
            <third_frame>   C  M  P  P  *  *  M  R  G  T  E  K   : E  D  Q  K  R  L  I  P  L  M  H  E  R  F  L  V  N  M  A  W  K  T  G  G  S  I  L  Y  A  K  L  I  F  H  K  G  L  C  L  M  T  M  A  I  T  I  A  V  L  P  S  H  F  L  K  R  C  N  L  I  E  F  *  N  L  G  S  I  V  C  F  F  L  L  L  I  V  C  S  C  S  *  L  C  *  I  A  I  I  L  *  V  V  *  L  K  L  R  V  V  I  L  C  V  T  M  Y  P  E  S  H  T  C  L  F  F  L  N  S  R  N  S  C  P  A  L  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115939" stop="115902"/>
                    <exon start="115762" stop="115582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHATVMNARHRKRGSKKVDSFDARKIFGQYGLEDWGEYLVREAHLSQRFVFDDDGYYHCCASIPFPEEMQLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115920" stop="115902"/>
                    <exon start="115762" stop="115575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRGTEKEDQKRLIPLMHERFLVNMAWKTGGSILYAKLIFHKGLCLMTMAITIAVLPSHFLKRCNLIEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="125066" PGL_stop="129146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125066" e_stop="125418"/>
            <exon e_start="126424" e_stop="126868"/>
            <exon e_start="127044" e_stop="127159"/>
            <exon e_start="128457" e_stop="129146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125066" e_stop="125418" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.882">
            <gDNA_intron_boundary i_start="125419" i_stop="126423" i_length="1005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126424" e_stop="126868" e_length="445"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126869" i_stop="127043" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127044" e_stop="127159" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127160" i_stop="128456" i_length="1297"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="128457" e_stop="129146" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125066" stop="125418"/>
              <exon start="126424" stop="126513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125096" stop="125418"/>
              <exon start="126424" stop="126575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125208" stop="125418"/>
              <exon start="126424" stop="126648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126425" stop="126868"/>
              <exon start="127044" stop="127071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126426" stop="126868"/>
              <exon start="127044" stop="127106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126426" stop="126746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126448" stop="126868"/>
              <exon start="127044" stop="127159"/>
              <exon start="128457" stop="128775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126584" stop="126868"/>
              <exon start="127044" stop="127153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126791" stop="126868"/>
              <exon start="127044" stop="127159"/>
              <exon start="128457" stop="128789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127086" stop="127159"/>
              <exon start="128457" stop="129078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128462" stop="129127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128806" stop="129146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGAGCAGGGAAGTGAGAGTGCGTAGAGCACAACGAGGACGATGCTGGAAAGAGTGCTCTCTTCTCGCAGGGCGACGCCGGTCAGTGACGACGGCGATGAGACTGGCGACGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGT : GCAGAACGAAACATGACAGAACTGTTGAATGGACCACAAAGGATTTAATCAAAGGTCTGGAGGAGTTTGTGCCCATATATGAGACACGGCCTATCAAGAATAACATGTATGGTATGGGTTTTGATCACAGCTTTGGGCTCTGGTTTATCACTCGGTGGTTAAAACCAGAGTTGATGATTGAGAGTGGTGCATTCAAGGGACACTCAACTTGGGTCTTGAGACAAGCAATGCCAGATACACGAATCATCTCACTTACACCCCGTCATCCTGAGAAGTATCTAAAGAAAGGGCCTGCCTACGTTGATGAGAATTGCACGTACTTCGCTGGAAAAGACTTTGTTGATTTTGGAAATGTTGATTGGGGGAAAGTTATGAAGAAGCATGGAATCAAGGATCGTAGCCAGGTTCTTGTCTTTTTTGATGATCATCAAAATGAATTGAAAAG : ACTGAAGCAAGCACTAAAAGCTGGGTTTAGGCATCTTGTGTTTGAGGACAATTATGATACTGGTACAGGAGACCACTACTCTTTCAGGCAAATGTGCGATCAATTTTATATTAGAG : GTGGAGGCCATAGCTGCTTTAAGGACAGTGATGAAGGAAGGATCAGAGCAAGAAGGAAGAAATTCTGGGAGAAGGCTGTTGACATTGATGAACTTTGCGGTCCTGGTGAAGCTTGGTGGGGTGTGAGAGGGCAGATGCGGGATGATTTTAACCACAGTAATAAGGCCATTTCTTATGCAGAACATTTTAAAAATAGCAGGTTTGTAGAGTCAGTGTTAGATGTTTACTGGGAGCTTCCACCCGTGGCTGGTCCTTCATTAACTCATCAGACAAGATACGATCCGGCTCGGGCATCAAGTCCTATTGTTGAAGATGGCAGGTATGGCTTGTTTCGGAGGCTTGGGTTATCTGGACTGGAGGCATCTGTATTCAATGGTTACACTCAAATGGTCTATCTTCAGGTGTCTCAAGAATGAGATTTTGGTTGCCACTGCATATAAGTTGTAGTTTTGTATTAGCGATCTCTGTGTCAACTGTTCTTTTAGTTGTTTCTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCCATTTATCCACTGGTCACTCTGATGTTTGTGCAGAGTAACGGATGTCTGATGAGTTAAATTTATCCCATCTGTATAATGTGCTCGTAAATTATATTCTAGAAAATAGCCTATGTTGAAACAACCCTCCTT</gDNA_template>
            <first_frame> H  R  A  G  K  *  E  C  V  E  H  N  E  D  D  A  G  K  S  A  L  F  S  Q  G  D  A  G  Q  *  R  R  R  *  D  W  R  R  I  Q  N  S  E  A  H  I  C  G  D  E  G  Y  K  L  R  D  S  N  W  S  S  L  A  M  P  S  H  R  A  C  D  C  V  G  N  F  F  R  L  S  H  S  R  L  S  M  Y  L  R  F  L  F  R  S  P  F  S  F  A  I  L  W  L  R  R  P  G  N  G  L  R  I  S  R  C  S  L  V :   Q  N  E  T  *  Q  N  C  *  M  D  H  K  G  F  N  Q  R  S  G  G  V  C  A  H  I  *  D  T  A  Y  Q  E  *  H  V  W  Y  G  F  *  S  Q  L  W  A  L  V  Y  H  S  V  V  K  T  R  V  D  D  *  E  W  C  I  Q  G  T  L  N  L  G  L  E  T  S  N  A  R  Y  T  N  H  L  T  Y  T  P  S  S  *  E  V  S  K  E  R  A  C  L  R  *  *  E  L  H  V  L  R  W  K  R  L  C  *  F  W  K  C  *  L  G  E  S  Y  E  E  A  W  N  Q  G  S  *  P  G  S  C  L  F  *  *  S  S  K  *  I  E  K  :  T  E  A  S  T  K  S  W  V  *  A  S  C  V  *  G  Q  L  *  Y  W  Y  R  R  P  L  L  F  Q  A  N  V  R  S  I  L  Y  *  R :   W  R  P  *  L  L  *  G  Q  *  *  R  K  D  Q  S  K  K  E  E  I  L  G  E  G  C  *  H  *  *  T  L  R  S  W  *  S  L  V  G  C  E  R  A  D  A  G  *  F  *  P  Q  *  *  G  H  F  L  C  R  T  F  *  K  *  Q  V  C  R  V  S  V  R  C  L  L  G  A  S  T  R  G  W  S  F  I  N  S  S  D  K  I  R  S  G  S  G  I  K  S  Y  C  *  R  W  Q  V  W  L  V  S  E  A  W  V  I  W  T  G  G  I  C  I  Q  W  L  H  S  N  G  L  S  S  G  V  S  R  M  R  F  W  L  P  L  H  I  S  C  S  F  V  L  A  I  S  V  S  T  V  L  L  V  V  S  G  A  T  L  E  R  L  S  L  C  C  Q  *  I  L  L  R  Q  S  F  R  C  P  F  I  H  W  S  L  *  C  L  C  R  V  T  D  V  *  *  V  K  F  I  P  S  V  *  C  A  R  K  L  Y  S  R  K  *  P  M  L  K  Q  P  S   </first_frame>
            <second_frame>  T  E  Q  G  S  E  S  A  *  S  T  T  R  T  M  L  E  R  V  L  S  S  R  R  A  T  P  V  S  D  D  G  D  E  T  G  D  E  S  K  T  R  K  H  I  S  V  A  T  R  V  T  N  Y  V  I  R  T  G  H  L  W  P  C  L  L  I  G  L  V  I  V  L  V  T  S  F  V  Y  H  T  R  D  L  V  C  I  S  A  S  S  S  D  H  L  S  R  L  R  F  F  G  F  E  G  L  E  T  D  F  G  S  L  G  V  P  W   : C  R  T  K  H  D  R  T  V  E  W  T  T  K  D  L  I  K  G  L  E  E  F  V  P  I  Y  E  T  R  P  I  K  N  N  M  Y  G  M  G  F  D  H  S  F  G  L  W  F  I  T  R  W  L  K  P  E  L  M  I  E  S  G  A  F  K  G  H  S  T  W  V  L  R  Q  A  M  P  D  T  R  I  I  S  L  T  P  R  H  P  E  K  Y  L  K  K  G  P  A  Y  V  D  E  N  C  T  Y  F  A  G  K  D  F  V  D  F  G  N  V  D  W  G  K  V  M  K  K  H  G  I  K  D  R  S  Q  V  L  V  F  F  D  D  H  Q  N  E  L  K  R :   L  K  Q  A  L  K  A  G  F  R  H  L  V  F  E  D  N  Y  D  T  G  T  G  D  H  Y  S  F  R  Q  M  C  D  Q  F  Y  I  R   : G  G  G  H  S  C  F  K  D  S  D  E  G  R  I  R  A  R  R  K  K  F  W  E  K  A  V  D  I  D  E  L  C  G  P  G  E  A  W  W  G  V  R  G  Q  M  R  D  D  F  N  H  S  N  K  A  I  S  Y  A  E  H  F  K  N  S  R  F  V  E  S  V  L  D  V  Y  W  E  L  P  P  V  A  G  P  S  L  T  H  Q  T  R  Y  D  P  A  R  A  S  S  P  I  V  E  D  G  R  Y  G  L  F  R  R  L  G  L  S  G  L  E  A  S  V  F  N  G  Y  T  Q  M  V  Y  L  Q  V  S  Q  E  *  D  F  G  C  H  C  I  *  V  V  V  L  Y  *  R  S  L  C  Q  L  F  F  *  L  F  L  V  Q  L  L  R  G  C  L  C  A  A  N  R  F  Y  S  D  N  L  S  D  V  H  L  S  T  G  H  S  D  V  C  A  E  *  R  M  S  D  E  L  N  L  S  H  L  Y  N  V  L  V  N  Y  I  L  E  N  S  L  C  *  N  N  P  P  </second_frame>
            <third_frame>   Q  S  R  E  V  R  V  R  R  A  Q  R  G  R  C  W  K  E  C  S  L  L  A  G  R  R  R  S  V  T  T  A  M  R  L  A  T  N  P  K  L  G  S  T  Y  L  W  R  R  G  L  Q  I  T  *  F  E  L  V  I  S  G  H  A  F  S  *  G  L  *  L  C  W  *  L  L  S  F  I  T  L  A  T  *  Y  V  S  P  L  P  L  P  I  T  F  L  V  C  D  S  L  A  S  K  A  W  K  R  T  S  D  L  S  V  F  L  G  :  A  E  R  N  M  T  E  L  L  N  G  P  Q  R  I  *  S  K  V  W  R  S  L  C  P  Y  M  R  H  G  L  S  R  I  T  C  M  V  W  V  L  I  T  A  L  G  S  G  L  S  L  G  G  *  N  Q  S  *  *  L  R  V  V  H  S  R  D  T  Q  L  G  S  *  D  K  Q  C  Q  I  H  E  S  S  H  L  H  P  V  I  L  R  S  I  *  R  K  G  L  P  T  L  M  R  I  A  R  T  S  L  E  K  T  L  L  I  L  E  M  L  I  G  G  K  L  *  R  S  M  E  S  R  I  V  A  R  F  L  S  F  L  M  I  I  K  M  N  *  K   : D  *  S  K  H  *  K  L  G  L  G  I  L  C  L  R  T  I  M  I  L  V  Q  E  T  T  T  L  S  G  K  C  A  I  N  F  I  L  E  :  V  E  A  I  A  A  L  R  T  V  M  K  E  G  S  E  Q  E  G  R  N  S  G  R  R  L  L  T  L  M  N  F  A  V  L  V  K  L  G  G  V  *  E  G  R  C  G  M  I  L  T  T  V  I  R  P  F  L  M  Q  N  I  L  K  I  A  G  L  *  S  Q  C  *  M  F  T  G  S  F  H  P  W  L  V  L  H  *  L  I  R  Q  D  T  I  R  L  G  H  Q  V  L  L  L  K  M  A  G  M  A  C  F  G  G  L  G  Y  L  D  W  R  H  L  Y  S  M  V  T  L  K  W  S  I  F  R  C  L  K  N  E  I  L  V  A  T  A  Y  K  L  *  F  C  I  S  D  L  C  V  N  C  S  F  S  C  F  W  C  N  S  *  E  A  V  S  V  L  P  I  D  F  T  P  T  I  F  Q  M  S  I  Y  P  L  V  T  L  M  F  V  Q  S  N  G  C  L  M  S  *  I  Y  P  I  C  I  M  C  S  *  I  I  F  *  K  I  A  Y  V  E  T  T  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125094" stop="125418"/>
                    <exon start="126424" stop="126868"/>
                    <exon start="127044" stop="127159"/>
                    <exon start="128457" stop="128872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTRTMLERVLSSRRATPVSDDGDETGDESKTRKHISVATRVTNYVIRTGHLWPCLLIGLVIVLVTSFVYHTRDLVCISASSSDHLSRLRFFGFEGLETDFGSLGVPWCRTKHDRTVEWTTKDLIKGLEEFVPIYETRPIKNNMYGMGFDHSFGLWFITRWLKPELMIESGAFKGHSTWVLRQAMPDTRIISLTPRHPEKYLKKGPAYVDENCTYFAGKDFVDFGNVDWGKVMKKHGIKDRSQVLVFFDDHQNELKRLKQALKAGFRHLVFEDNYDTGTGDHYSFRQMCDQFYIRGGGHSCFKDSDEGRIRARRKKFWEKAVDIDELCGPGEAWWGVRGQMRDDFNHSNKAISYAEHFKNSRFVESVLDVYWELPPVAGPSLTHQTRYDPARASSPIVEDGRYGLFRRLGLSGLEASVFNGYTQMVYLQVSQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125177" e_stop="125894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="125177" e_stop="125894" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125177" stop="125894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125177" stop="125747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATCCAAAACTCGGAAGCACATATCTGTGGCGACGAGGGTTACAAATTACGTGATTCGAACTGGTCATCTCTGGCCATGCCTTCTCATAGGGCTTGTGATTGTGTTGGTAACTTCTTTCGTTTATCACACTCGCGACTTAGTATGTATCTCCGCTTCCTCTTCCGATCACCTTTCTCGTTTGCGATTCTTTGGCTTCGAAGGCCTGGAAACGGACTTCGGATCTCTCGGTGTTCCTTGGTGTAAGTTCATTGCGTTTCAGTTTTAGTGTATATTCAGATCTGGTTTTATTTTTCCTTGTTGAGCATTGCGTGCTAGTGTATTTTCTCTAAATGGATTCAATTGAACACATCTCGATTTCCTTCGGAGGAACTGTGGTACATTTATTTTCTATTAGATTTTATTGATTTGTGAAATCTAAACCTACGGTTTTCCAGCTGTACATGAATCATCTGTAGGATGTGTCATGGTGCAATTAACTGGATTAATGTTTTGTATTATTTTGGTGTCACTTTCGTTGTAGGATCCAATGGCTTGATTCAAACAGAACAAGATTGATATTACATGTGATGTTAAAGAAGGAATTTGGTGTGTTAGAAATTTACAAGTGGCATAGATTGTTGCTTCATATAGTTAATGGAGGAACTAGGTGTGTATAATAATTCTAGTGGTACAGATTATCGTTTTTATCTAACTGATAGTTTCCTATTTGATTGCT</gDNA_template>
            <first_frame> R  I  Q  N  S  E  A  H  I  C  G  D  E  G  Y  K  L  R  D  S  N  W  S  S  L  A  M  P  S  H  R  A  C  D  C  V  G  N  F  F  R  L  S  H  S  R  L  S  M  Y  L  R  F  L  F  R  S  P  F  S  F  A  I  L  W  L  R  R  P  G  N  G  L  R  I  S  R  C  S  L  V  *  V  H  C  V  S  V  L  V  Y  I  Q  I  W  F  Y  F  S  L  L  S  I  A  C  *  C  I  F  S  K  W  I  Q  L  N  T  S  R  F  P  S  E  E  L  W  Y  I  Y  F  L  L  D  F  I  D  L  *  N  L  N  L  R  F  S  S  C  T  *  I  I  C  R  M  C  H  G  A  I  N  W  I  N  V  L  Y  Y  F  G  V  T  F  V  V  G  S  N  G  L  I  Q  T  E  Q  D  *  Y  Y  M  *  C  *  R  R  N  L  V  C  *  K  F  T  S  G  I  D  C  C  F  I  *  L  M  E  E  L  G  V  Y  N  N  S  S  G  T  D  Y  R  F  Y  L  T  D  S  F  L  F  D  C  </first_frame>
            <second_frame>  E  S  K  T  R  K  H  I  S  V  A  T  R  V  T  N  Y  V  I  R  T  G  H  L  W  P  C  L  L  I  G  L  V  I  V  L  V  T  S  F  V  Y  H  T  R  D  L  V  C  I  S  A  S  S  S  D  H  L  S  R  L  R  F  F  G  F  E  G  L  E  T  D  F  G  S  L  G  V  P  W  C  K  F  I  A  F  Q  F  *  C  I  F  R  S  G  F  I  F  P  C  *  A  L  R  A  S  V  F  S  L  N  G  F  N  *  T  H  L  D  F  L  R  R  N  C  G  T  F  I  F  Y  *  I  L  L  I  C  E  I  *  T  Y  G  F  P  A  V  H  E  S  S  V  G  C  V  M  V  Q  L  T  G  L  M  F  C  I  I  L  V  S  L  S  L  *  D  P  M  A  *  F  K  Q  N  K  I  D  I  T  C  D  V  K  E  G  I  W  C  V  R  N  L  Q  V  A  *  I  V  A  S  Y  S  *  W  R  N  *  V  C  I  I  I  L  V  V  Q  I  I  V  F  I  *  L  I  V  S  Y  L  I  A </second_frame>
            <third_frame>   N  P  K  L  G  S  T  Y  L  W  R  R  G  L  Q  I  T  *  F  E  L  V  I  S  G  H  A  F  S  *  G  L  *  L  C  W  *  L  L  S  F  I  T  L  A  T  *  Y  V  S  P  L  P  L  P  I  T  F  L  V  C  D  S  L  A  S  K  A  W  K  R  T  S  D  L  S  V  F  L  G  V  S  S  L  R  F  S  F  S  V  Y  S  D  L  V  L  F  F  L  V  E  H  C  V  L  V  Y  F  L  *  M  D  S  I  E  H  I  S  I  S  F  G  G  T  V  V  H  L  F  S  I  R  F  Y  *  F  V  K  S  K  P  T  V  F  Q  L  Y  M  N  H  L  *  D  V  S  W  C  N  *  L  D  *  C  F  V  L  F  W  C  H  F  R  C  R  I  Q  W  L  D  S  N  R  T  R  L  I  L  H  V  M  L  K  K  E  F  G  V  L  E  I  Y  K  W  H  R  L  L  L  H  I  V  N  G  G  T  R  C  V  *  *  F  *  W  Y  R  L  S  F  L  S  N  *  *  F  P  I  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125178" stop="125444"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESKTRKHISVATRVTNYVIRTGHLWPCLLIGLVIVLVTSFVYHTRDLVCISASSSDHLSRLRFFGFEGLETDFGSLGVPWCKFIAFQF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125177" stop="125422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQNSEAHICGDEGYKLRDSNWSSLAMPSHRACDCVGNFFRLSHSRLSMYLRFLFRSPFSFAILWLRRPGNGLRISRCSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="131833" PGL_stop="128914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131833" e_stop="131207"/>
            <exon e_start="131093" e_stop="130876"/>
            <exon e_start="130354" e_stop="130213"/>
            <exon e_start="130110" e_stop="130049"/>
            <exon e_start="129923" e_stop="129738"/>
            <exon e_start="128947" e_stop="128914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.927"/>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="131833" e_stop="131207" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131093" e_stop="130876" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130354" e_stop="130213" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="130110" e_stop="130049" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="129923" e_stop="129738" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="129737" i_stop="128948" i_length="790"/>
          </intron>
          <exon e_serial="6" e_score="0.647">
            <gDNA_exon_boundary e_start="128947" e_stop="128914" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131833" stop="131235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131714" stop="131207"/>
              <exon start="131093" stop="131039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131711" stop="131207"/>
              <exon start="131093" stop="131021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131706" stop="131207"/>
              <exon start="131093" stop="130988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131703" stop="131207"/>
              <exon start="131093" stop="130876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131702" stop="131207"/>
              <exon start="131093" stop="130998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131689" stop="131207"/>
              <exon start="131093" stop="130924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131672" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131635" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131608" stop="131207"/>
              <exon start="131093" stop="131020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131580" stop="131207"/>
              <exon start="131093" stop="131021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131537" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131510" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131069" stop="130876"/>
              <exon start="130354" stop="130257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130946" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129738"/>
              <exon start="128947" stop="128914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130944" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130895" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129738"/>
              <exon start="128947" stop="128914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474025" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGCATATGGAATAGTAGTTCCAATATTACTATAGTACACACTACACAGTTCATTTATTCCAAAAAGAAGTCTACAAAAGCACCAAAAGAAGTCTCTTTTCTGCATCAACAAAATTAAACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA : GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG : GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA : GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG : CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTAC : AAACAACTAAAAGAACAGTTGACACAGAGATCGC</gDNA_template>
            <first_frame> I  S  I  W  N  S  S  S  N  I  T  I  V  H  T  T  Q  F  I  Y  S  K  K  K  S  T  K  A  P  K  E  V  S  F  L  H  Q  Q  N  *  T  T  S  S  F  L  L  *  L  F  L  *  K  K  F  F  S  F  S  S  L  P  *  F  L  E  F  L  *  R  N  S  S  C  L  F  T  N  L  C  S  T  F  H  V  C  T  I  R  T  *  L  Y  R  F  I  R  T  F  F  N  G  K  K  F  *  *  D  F  F  F  F  F  F  L  C  S  K  P  *  G  D  *  A  E  T  W  V  A  W  F  *  V  S  W  G  F  S  F  W  Q  R  F  G  P  F  K  Q  F  Y  I  K  N  K  K  G  F  F  *  C  N  *  C  I  W  K  I  G  F  V  Y  *  L  Q  I  *  S  *  *  G  K  R  E  L  V  V  F  P  K  K  R  E  W  R  F  K  P  C  *  R  K  K  A  Y  P  S  Y  F  K  :  G  T  S  G  R  M  A  T  N  *  I  I  Q  E  K  Y  T  G  Y  *  E  K  *  *  *  R  E  N  R  F  K  L  P  L  C  *  G  *  H  G  W  C  S  I  S  E  E  S  *  Y  Q  N  L  Q  *  L  C  S  A  L  I  S  T  *  K  D  V  Q  L  L  *  Y  W :   S  V  C  Q  *  *  D  S  R  A  R  E  A  Q  *  K  S  L  D  G  S  S  Q  W  F  *  V  C  A  D  L  *  G  Q  G  W  *  L  D  A  S  W  R  C  S  L  G  :  D  V  H  R  L  M  Q  E  I  A  D  H  E  E  L  R  G  N  W  A  S :   S  K  G  H  K  *  V  Q  E  P  K  L  V  T  E  R  L  T  V  Q  R  V  S  T  T  S  T  I  L  F  L  P  C  L  Y  L  E  L  D  *  M  C  S  I  P  *  K  G  E  S  W  F  K  K  I  *  P  V  K  N  C  T :   N  N  *  K  N  S  *  H  R  D  R </first_frame>
            <second_frame>  *  A  Y  G  I  V  V  P  I  L  L  *  Y  T  L  H  S  S  F  I  P  K  R  S  L  Q  K  H  Q  K  K  S  L  F  C  I  N  K  I  K  Q  P  L  P  F  S  C  N  F  F  F  K  K  S  F  F  L  F  H  L  F  H  S  F  L  N  S  C  R  E  I  H  L  V  C  L  L  I  C  A  Q  L  S  M  S  V  P  L  E  H  D  Y  I  G  L  S  E  P  S  L  M  E  R  S  S  D  K  I  S  S  S  S  S  S  S  V  L  N  L  K  E  T  E  L  R  L  G  L  P  G  S  E  S  H  G  V  S  L  F  G  K  D  L  D  P  L  S  N  F  T  S  R  T  K  R  G  F  S  D  A  I  D  A  S  G  K  S  D  L  S  I  N  C  R  S  E  A  D  R  E  N  G  N  L  L  F  S  P  K  R  G  N  G  G  S  N  P  V  E  E  K  K  P  I  P  H  T  S  K :   A  Q  V  V  G  W  P  P  I  R  S  F  R  K  N  T  L  A  T  K  K  N  D  D  E  G  R  T  G  S  S  C  L  Y  V  K  V  S  M  D  G  A  P  Y  L  R  K  V  D  I  K  T  Y  S  N  Y  A  A  L  S  S  A  L  E  K  M  F  S  C  F  S  I   : G  Q  C  A  S  D  K  I  P  G  Q  E  K  L  S  E  S  H  L  M  D  L  L  N  G  S  E  Y  V  L  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  E :   M  F  I  D  S  C  K  R  L  R  I  M  K  S  S  E  A  I  G  L   : A  P  R  A  I  N  K  C  K  N  Q  N  *  *  L  K  D  *  P  S  K  G  F  L  Q  R  Q  P  S  F  F  C  P  V  C  I  W  N  *  T  R  C  V  A  S  P  E  R  E  R  A  G  L  R  K  Y  N  R  S  K  I  V   : Q  T  T  K  R  T  V  D  T  E  I   </second_frame>
            <third_frame>   K  H  M  E  *  *  F  Q  Y  Y  Y  S  T  H  Y  T  V  H  L  F  Q  K  E  V  Y  K  S  T  K  R  S  L  F  S  A  S  T  K  L  N  N  L  F  L  S  L  V  T  F  S  L  K  K  V  F  F  F  F  I  S  S  I  V  S  *  I  L  V  E  K  F  I  L  S  V  Y  *  F  V  L  N  F  P  C  L  Y  H  *  N  M  I  I  *  V  Y  Q  N  L  L  *  W  K  E  V  L  I  R  F  L  L  L  L  L  P  L  F  *  T  L  R  R  L  S  *  D  L  G  C  L  V  L  S  L  M  G  F  L  F  L  A  K  I  W  T  L  *  A  I  L  H  Q  E  Q  K  G  V  F  L  M  Q  L  M  H  L  E  N  R  I  C  L  L  I  A  D  L  K  L  I  G  K  T  G  T  C  C  F  P  Q  K  E  G  M  E  V  Q  T  L  L  K  K  K  S  L  S  L  I  L  Q   : R  H  K  W  *  D  G  H  Q  L  D  H  S  G  K  I  H  W  L  L  R  K  M  M  M  K  G  E  Q  V  Q  V  A  F  M  L  R  L  A  W  M  V  L  H  I  *  G  K  L  I  S  K  L  T  V  T  M  Q  R  S  H  Q  H  L  K  R  C  S  A  A  L  V  L  :  V  S  V  P  V  I  R  F  Q  G  K  R  S  S  V  K  V  T  *  W  I  F  S  M  V  L  S  M  C  *  L  M  R  T  R  M  V  I  G  C  *  L  A  M  F  L  G   : R  C  S  *  T  H  A  R  D  C  G  S  *  R  A  Q  R  Q  L  G  *  :  L  Q  G  P  *  I  S  A  R  T  K  I  S  D  *  K  T  N  R  P  K  G  F  Y  N  V  N  H  P  F  S  A  L  F  V  S  G  I  R  L  D  V  *  H  P  L  K  G  R  E  L  V  *  E  N  I  T  G  Q  K  L  Y  :  K  Q  L  K  E  Q  L  T  Q  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131796" stop="131207"/>
                    <exon start="131093" stop="130876"/>
                    <exon start="130354" stop="130213"/>
                    <exon start="130110" stop="130049"/>
                    <exon start="129923" stop="129886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTLHSSFIPKRSLQKHQKKSLFCINKIKQPLPFSCNFFFKKSFFLFHLFHSFLNSCREIHLVCLLICAQLSMSVPLEHDYIGLSEPSLMERSSDKISSSSSSSVLNLKETELRLGLPGSESHGVSLFGKDLDPLSNFTSRTKRGFSDAIDASGKSDLSINCRSEADRENGNLLFSPKRGNGGSNPVEEKKPIPHTSKAQVVGWPPIRSFRKNTLATKKNDDEGRTGSSCLYVKVSMDGAPYLRKVDIKTYSNYAALSSALEKMFSCFSIGQCASDKIPGQEKLSESHLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAINKCKNQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131833" e_stop="131207"/>
            <exon e_start="131093" e_stop="130876"/>
            <exon e_start="130354" e_stop="130213"/>
            <exon e_start="130110" e_stop="130049"/>
            <exon e_start="129923" e_stop="129594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.927"/>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="131833" e_stop="131207" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131206" i_stop="131094" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131093" e_stop="130876" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130875" i_stop="130355" i_length="521"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130354" e_stop="130213" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130110" e_stop="130049" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="129923" e_stop="129594" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131833" stop="131235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131714" stop="131207"/>
              <exon start="131093" stop="131039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131711" stop="131207"/>
              <exon start="131093" stop="131021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131706" stop="131207"/>
              <exon start="131093" stop="130988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131703" stop="131207"/>
              <exon start="131093" stop="130876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131702" stop="131207"/>
              <exon start="131093" stop="130998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131689" stop="131207"/>
              <exon start="131093" stop="130924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131672" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131635" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131608" stop="131207"/>
              <exon start="131093" stop="131020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131580" stop="131207"/>
              <exon start="131093" stop="131021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131537" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131510" stop="131207"/>
              <exon start="131093" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131069" stop="130876"/>
              <exon start="130354" stop="130257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130944" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130932" stop="130876"/>
              <exon start="130354" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGCATATGGAATAGTAGTTCCAATATTACTATAGTACACACTACACAGTTCATTTATTCCAAAAAGAAGTCTACAAAAGCACCAAAAGAAGTCTCTTTTCTGCATCAACAAAATTAAACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAA : GGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTG : GTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA : GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG : CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACATAATAACTTCCAAGTTCTAACCTACTA</gDNA_template>
            <first_frame> I  S  I  W  N  S  S  S  N  I  T  I  V  H  T  T  Q  F  I  Y  S  K  K  K  S  T  K  A  P  K  E  V  S  F  L  H  Q  Q  N  *  T  T  S  S  F  L  L  *  L  F  L  *  K  K  F  F  S  F  S  S  L  P  *  F  L  E  F  L  *  R  N  S  S  C  L  F  T  N  L  C  S  T  F  H  V  C  T  I  R  T  *  L  Y  R  F  I  R  T  F  F  N  G  K  K  F  *  *  D  F  F  F  F  F  F  L  C  S  K  P  *  G  D  *  A  E  T  W  V  A  W  F  *  V  S  W  G  F  S  F  W  Q  R  F  G  P  F  K  Q  F  Y  I  K  N  K  K  G  F  F  *  C  N  *  C  I  W  K  I  G  F  V  Y  *  L  Q  I  *  S  *  *  G  K  R  E  L  V  V  F  P  K  K  R  E  W  R  F  K  P  C  *  R  K  K  A  Y  P  S  Y  F  K  :  G  T  S  G  R  M  A  T  N  *  I  I  Q  E  K  Y  T  G  Y  *  E  K  *  *  *  R  E  N  R  F  K  L  P  L  C  *  G  *  H  G  W  C  S  I  S  E  E  S  *  Y  Q  N  L  Q  *  L  C  S  A  L  I  S  T  *  K  D  V  Q  L  L  *  Y  W :   S  V  C  Q  *  *  D  S  R  A  R  E  A  Q  *  K  S  L  D  G  S  S  Q  W  F  *  V  C  A  D  L  *  G  Q  G  W  *  L  D  A  S  W  R  C  S  L  G  :  D  V  H  R  L  M  Q  E  I  A  D  H  E  E  L  R  G  N  W  A  S :   S  K  G  H  K  *  V  Q  E  P  K  L  V  T  E  R  L  T  V  Q  R  V  S  T  T  S  T  I  L  F  L  P  C  L  Y  L  E  L  D  *  M  C  S  I  P  *  K  G  E  S  W  F  K  K  I  *  P  V  K  N  C  T  V  A  S  V  F  *  V  A  I  F  A  C  T  C  N  L  Q  V  Y  L  Q  T  Y  I  N  F  *  A  Y  N  Q  P  T  I  I  L  M  K  H  N  N  F  Q  V  L  T  Y   </first_frame>
            <second_frame>  *  A  Y  G  I  V  V  P  I  L  L  *  Y  T  L  H  S  S  F  I  P  K  R  S  L  Q  K  H  Q  K  K  S  L  F  C  I  N  K  I  K  Q  P  L  P  F  S  C  N  F  F  F  K  K  S  F  F  L  F  H  L  F  H  S  F  L  N  S  C  R  E  I  H  L  V  C  L  L  I  C  A  Q  L  S  M  S  V  P  L  E  H  D  Y  I  G  L  S  E  P  S  L  M  E  R  S  S  D  K  I  S  S  S  S  S  S  S  V  L  N  L  K  E  T  E  L  R  L  G  L  P  G  S  E  S  H  G  V  S  L  F  G  K  D  L  D  P  L  S  N  F  T  S  R  T  K  R  G  F  S  D  A  I  D  A  S  G  K  S  D  L  S  I  N  C  R  S  E  A  D  R  E  N  G  N  L  L  F  S  P  K  R  G  N  G  G  S  N  P  V  E  E  K  K  P  I  P  H  T  S  K :   A  Q  V  V  G  W  P  P  I  R  S  F  R  K  N  T  L  A  T  K  K  N  D  D  E  G  R  T  G  S  S  C  L  Y  V  K  V  S  M  D  G  A  P  Y  L  R  K  V  D  I  K  T  Y  S  N  Y  A  A  L  S  S  A  L  E  K  M  F  S  C  F  S  I   : G  Q  C  A  S  D  K  I  P  G  Q  E  K  L  S  E  S  H  L  M  D  L  L  N  G  S  E  Y  V  L  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  E :   M  F  I  D  S  C  K  R  L  R  I  M  K  S  S  E  A  I  G  L   : A  P  R  A  I  N  K  C  K  N  Q  N  *  *  L  K  D  *  P  S  K  G  F  L  Q  R  Q  P  S  F  F  C  P  V  C  I  W  N  *  T  R  C  V  A  S  P  E  R  E  R  A  G  L  R  K  Y  N  R  S  K  I  V  L  W  L  V  S  F  E  W  Q  F  L  L  A  H  A  T  C  K  F  I  C  K  H  T  L  I  F  K  H  I  T  N  Q  L  L  F  *  *  N  I  I  T  S  K  F  *  P  T  </second_frame>
            <third_frame>   K  H  M  E  *  *  F  Q  Y  Y  Y  S  T  H  Y  T  V  H  L  F  Q  K  E  V  Y  K  S  T  K  R  S  L  F  S  A  S  T  K  L  N  N  L  F  L  S  L  V  T  F  S  L  K  K  V  F  F  F  F  I  S  S  I  V  S  *  I  L  V  E  K  F  I  L  S  V  Y  *  F  V  L  N  F  P  C  L  Y  H  *  N  M  I  I  *  V  Y  Q  N  L  L  *  W  K  E  V  L  I  R  F  L  L  L  L  L  P  L  F  *  T  L  R  R  L  S  *  D  L  G  C  L  V  L  S  L  M  G  F  L  F  L  A  K  I  W  T  L  *  A  I  L  H  Q  E  Q  K  G  V  F  L  M  Q  L  M  H  L  E  N  R  I  C  L  L  I  A  D  L  K  L  I  G  K  T  G  T  C  C  F  P  Q  K  E  G  M  E  V  Q  T  L  L  K  K  K  S  L  S  L  I  L  Q   : R  H  K  W  *  D  G  H  Q  L  D  H  S  G  K  I  H  W  L  L  R  K  M  M  M  K  G  E  Q  V  Q  V  A  F  M  L  R  L  A  W  M  V  L  H  I  *  G  K  L  I  S  K  L  T  V  T  M  Q  R  S  H  Q  H  L  K  R  C  S  A  A  L  V  L  :  V  S  V  P  V  I  R  F  Q  G  K  R  S  S  V  K  V  T  *  W  I  F  S  M  V  L  S  M  C  *  L  M  R  T  R  M  V  I  G  C  *  L  A  M  F  L  G   : R  C  S  *  T  H  A  R  D  C  G  S  *  R  A  Q  R  Q  L  G  *  :  L  Q  G  P  *  I  S  A  R  T  K  I  S  D  *  K  T  N  R  P  K  G  F  Y  N  V  N  H  P  F  S  A  L  F  V  S  G  I  R  L  D  V  *  H  P  L  K  G  R  E  L  V  *  E  N  I  T  G  Q  K  L  Y  C  G  *  C  L  L  S  G  N  F  C  L  H  M  Q  P  A  S  L  F  A  N  I  H  *  F  L  S  I  *  P  T  N  Y  Y  S  D  E  T  *  *  L  P  S  S  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131796" stop="131207"/>
                    <exon start="131093" stop="130876"/>
                    <exon start="130354" stop="130213"/>
                    <exon start="130110" stop="130049"/>
                    <exon start="129923" stop="129886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTLHSSFIPKRSLQKHQKKSLFCINKIKQPLPFSCNFFFKKSFFLFHLFHSFLNSCREIHLVCLLICAQLSMSVPLEHDYIGLSEPSLMERSSDKISSSSSSSVLNLKETELRLGLPGSESHGVSLFGKDLDPLSNFTSRTKRGFSDAIDASGKSDLSINCRSEADRENGNLLFSPKRGNGGSNPVEEKKPIPHTSKAQVVGWPPIRSFRKNTLATKKNDDEGRTGSSCLYVKVSMDGAPYLRKVDIKTYSNYAALSSALEKMFSCFSIGQCASDKIPGQEKLSESHLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAINKCKNQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="130567" e_stop="130213"/>
            <exon e_start="130110" e_stop="130049"/>
            <exon e_start="129923" e_stop="129703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130567" e_stop="130213" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130212" i_stop="130111" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130110" e_stop="130049" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="130048" i_stop="129924" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129923" e_stop="129703" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130567" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130567" stop="130213"/>
              <exon start="130110" stop="130049"/>
              <exon start="129923" stop="129757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130567" stop="130213"/>
              <exon start="130110" stop="130075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGGATAGAACCCTATGTTTGAACCGTAGTTTCCTCTTGTACCTTTTTCATCCACAGAAATTATTTATCAGGCACCTAGCGAACATTCTTTCTCATTTTTCTGATAGCCACTTTGAGAATTGTTATTGTTTGTATTGCTGTTATGTTGGTTTGAGTCTTGAGATTGTGTGTGTGTCTAAGTGAAATTATAATTTTGTGACTATTATTCAGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGA : GATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAG : CTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTT</gDNA_template>
            <first_frame> K  K  D  R  T  L  C  L  N  R  S  F  L  L  Y  L  F  H  P  Q  K  L  F  I  R  H  L  A  N  I  L  S  H  F  S  D  S  H  F  E  N  C  Y  C  L  Y  C  C  Y  V  G  L  S  L  E  I  V  C  V  S  K  *  N  Y  N  F  V  T  I  I  Q  V  S  V  P  V  I  R  F  Q  G  K  R  S  S  V  K  V  T  *  W  I  F  S  M  V  L  S  M  C  *  L  M  R  T  R  M  V  I  G  C  *  L  A  M  F  L  G   : R  C  S  *  T  H  A  R  D  C  G  S  *  R  A  Q  R  Q  L  G  *  :  L  Q  G  P  *  I  S  A  R  T  K  I  S  D  *  K  T  N  R  P  K  G  F  Y  N  V  N  H  P  F  S  A  L  F  V  S  G  I  R  L  D  V  *  H  P  L  K  G  R  E  L  V  *  E  N  I  T  G  Q  K  L  Y  C  G  *  C  L  L  S  G  N  F  C   </first_frame>
            <second_frame>  K  R  I  E  P  Y  V  *  T  V  V  S  S  C  T  F  F  I  H  R  N  Y  L  S  G  T  *  R  T  F  F  L  I  F  L  I  A  T  L  R  I  V  I  V  C  I  A  V  M  L  V  *  V  L  R  L  C  V  C  L  S  E  I  I  I  L  *  L  L  F  R  S  V  C  Q  *  *  D  S  R  A  R  E  A  Q  *  K  S  L  D  G  S  S  Q  W  F  *  V  C  A  D  L  *  G  Q  G  W  *  L  D  A  S  W  R  C  S  L  G  :  D  V  H  R  L  M  Q  E  I  A  D  H  E  E  L  R  G  N  W  A  S :   S  K  G  H  K  *  V  Q  E  P  K  L  V  T  E  R  L  T  V  Q  R  V  S  T  T  S  T  I  L  F  L  P  C  L  Y  L  E  L  D  *  M  C  S  I  P  *  K  G  E  S  W  F  K  K  I  *  P  V  K  N  C  T  V  A  S  V  F  *  V  A  I  F  A  </second_frame>
            <third_frame>   K  G  *  N  P  M  F  E  P  *  F  P  L  V  P  F  S  S  T  E  I  I  Y  Q  A  P  S  E  H  S  F  S  F  F  *  *  P  L  *  E  L  L  L  F  V  L  L  L  C  W  F  E  S  *  D  C  V  C  V  *  V  K  L  *  F  C  D  Y  Y  S  G  Q  C  A  S  D  K  I  P  G  Q  E  K  L  S  E  S  H  L  M  D  L  L  N  G  S  E  Y  V  L  T  Y  E  D  K  D  G  D  W  M  L  V  G  D  V  P  W  E :   M  F  I  D  S  C  K  R  L  R  I  M  K  S  S  E  A  I  G  L   : A  P  R  A  I  N  K  C  K  N  Q  N  *  *  L  K  D  *  P  S  K  G  F  L  Q  R  Q  P  S  F  F  C  P  V  C  I  W  N  *  T  R  C  V  A  S  P  E  R  E  R  A  G  L  R  K  Y  N  R  S  K  I  V  L  W  L  V  S  F  E  W  Q  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130373" stop="130213"/>
                    <exon start="130110" stop="130049"/>
                    <exon start="129923" stop="129886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCDYYSGQCASDKIPGQEKLSESHLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAINKCKNQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="130119" e_stop="129640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="130119" e_stop="129640" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130119" stop="129640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130119" stop="129640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAATAGGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGGTATGTCCTGTGATCATGTTTATGCTATGTAGCACTTATTTTTCTCTAGTGTCTAGTTCATAAAGTAGTACTCTATATATGCTTTAAAGTGGGTTTAGAATGACATTCTTTCTCTTGCTTTGCAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAA</gDNA_template>
            <first_frame> L  Q  *  D  V  H  R  L  M  Q  E  I  A  D  H  E  E  L  R  G  N  W  A  R  Y  V  L  *  S  C  L  C  Y  V  A  L  I  F  L  *  C  L  V  H  K  V  V  L  Y  I  C  F  K  V  G  L  E  *  H  S  F  S  C  F  A  A  P  R  A  I  N  K  C  K  N  Q  N  *  *  L  K  D  *  P  S  K  G  F  L  Q  R  Q  P  S  F  F  C  P  V  C  I  W  N  *  T  R  C  V  A  S  P  E  R  E  R  A  G  L  R  K  Y  N  R  S  K  I  V  L  W  L  V  S  F  E  W  Q  F  L  L  A  H  A  T  C  K  F  I  C  K  H  T  L  I  F  K  H  I  T  N  Q </first_frame>
            <second_frame>  Y  N  R  M  F  I  D  S  C  K  R  L  R  I  M  K  S  S  E  A  I  G  L  G  M  S  C  D  H  V  Y  A  M  *  H  L  F  F  S  S  V  *  F  I  K  *  Y  S  I  Y  A  L  K  W  V  *  N  D  I  L  S  L  A  L  Q  L  Q  G  P  *  I  S  A  R  T  K  I  S  D  *  K  T  N  R  P  K  G  F  Y  N  V  N  H  P  F  S  A  L  F  V  S  G  I  R  L  D  V  *  H  P  L  K  G  R  E  L  V  *  E  N  I  T  G  Q  K  L  Y  C  G  *  C  L  L  S  G  N  F  C  L  H  M  Q  P  A  S  L  F  A  N  I  H  *  F  L  S  I  *  P  T   </second_frame>
            <third_frame>   T  I  G  C  S  *  T  H  A  R  D  C  G  S  *  R  A  Q  R  Q  L  G  *  V  C  P  V  I  M  F  M  L  C  S  T  Y  F  S  L  V  S  S  S  *  S  S  T  L  Y  M  L  *  S  G  F  R  M  T  F  F  L  L  L  C  S  S  K  G  H  K  *  V  Q  E  P  K  L  V  T  E  R  L  T  V  Q  R  V  S  T  T  S  T  I  L  F  L  P  C  L  Y  L  E  L  D  *  M  C  S  I  P  *  K  G  E  S  W  F  K  K  I  *  P  V  K  N  C  T  V  A  S  V  F  *  V  A  I  F  A  C  T  C  N  L  Q  V  Y  L  Q  T  Y  I  N  F  *  A  Y  N  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0046F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="129673" PGL_stop="130119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129673" e_stop="130119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="129673" e_stop="130119" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129673" stop="130119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAAATAAACTTGCAGGTTGCATGTGCAAGCAAAAATTGCCACTCAAAAGACACTAGCCACAGTACAATTTTTGACCGGTTATATTTTCTTAAACCAGCTCTCTCCCTTTCAGGGGATGCTACACATCTAGTCTAATTCCAGATACAAACAGGGCAGAAAAAGGATGGTTGACGTTGTAGAAACCCTTTGGACGGTTAGTCTTTCAGTCACTAATTTTGGTTCTTGCACTTATTTATGGCCCTTGGAGCTGCAAAGCAAGAGAAAGAATGTCATTCTAAACCCACTTTAAAGCATATATAGAGTACTACTTTATGAACTAGACACTAGAGAAAAATAAGTGCTACATAGCATAAACATGATCACAGGACATACCTAGCCCAATTGCCTCTGAGCTCTTCATGATCCGCAATCTCTTGCATGAGTCTATGAACATCCTATTGTAG</gDNA_template>
            <first_frame> F  A  N  K  L  A  G  C  M  C  K  Q  K  L  P  L  K  R  H  *  P  Q  Y  N  F  *  P  V  I  F  S  *  T  S  S  L  P  F  R  G  C  Y  T  S  S  L  I  P  D  T  N  R  A  E  K  G  W  L  T  L  *  K  P  F  G  R  L  V  F  Q  S  L  I  L  V  L  A  L  I  Y  G  P  W  S  C  K  A  R  E  R  M  S  F  *  T  H  F  K  A  Y  I  E  Y  Y  F  M  N  *  T  L  E  K  N  K  C  Y  I  A  *  T  *  S  Q  D  I  P  S  P  I  A  S  E  L  F  M  I  R  N  L  L  H  E  S  M  N  I  L  L  * </first_frame>
            <second_frame>  L  Q  I  N  L  Q  V  A  C  A  S  K  N  C  H  S  K  D  T  S  H  S  T  I  F  D  R  L  Y  F  L  K  P  A  L  S  L  S  G  D  A  T  H  L  V  *  F  Q  I  Q  T  G  Q  K  K  D  G  *  R  C  R  N  P  L  D  G  *  S  F  S  H  *  F  W  F  L  H  L  F  M  A  L  G  A  A  K  Q  E  K  E  C  H  S  K  P  T  L  K  H  I  *  S  T  T  L  *  T  R  H  *  R  K  I  S  A  T  *  H  K  H  D  H  R  T  Y  L  A  Q  L  P  L  S  S  S  *  S  A  I  S  C  M  S  L  *  T  S  Y  C   </second_frame>
            <third_frame>   C  K  *  T  C  R  L  H  V  Q  A  K  I  A  T  Q  K  T  L  A  T  V  Q  F  L  T  G  Y  I  F  L  N  Q  L  S  P  F  Q  G  M  L  H  I  *  S  N  S  R  Y  K  Q  G  R  K  R  M  V  D  V  V  E  T  L  W  T  V  S  L  S  V  T  N  F  G  S  C  T  Y  L  W  P  L  E  L  Q  S  K  R  K  N  V  I  L  N  P  L  *  S  I  Y  R  V  L  L  Y  E  L  D  T  R  E  K  *  V  L  H  S  I  N  M  I  T  G  H  T  *  P  N  C  L  *  A  L  H  D  P  Q  S  L  A  *  V  Y  E  H  P  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C03HBa0046F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="142608" PGL_stop="141886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142608" e_stop="141886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="142608" e_stop="141886" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142608" stop="142033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142605" stop="142251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142598" stop="141931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142598" stop="141989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142597" stop="141901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142597" stop="142038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142597" stop="142104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142590" stop="141903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142590" stop="141920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142590" stop="141993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142580" stop="141886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142561" stop="142039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAGTGGAACTCAAATCCACCATTCATGGCTTCCTCTCTATCTACAAACCTCAAATTCACCTTACAACATTCTTCTGTAACTCTTCCACCACCAAAATCAACCACCAGAAGAAAAATCTCAGTACGATGCGGTCCACGAAGCAACCGTGGACCTCTAGTTAAGGGCCGAATACTAAGCATCGAAGCAATCCAAGCGATTCAAGCTCTAAAACGAGCTCAAAGAACTGACCCTTCTCAAATCGAAGCTCAAGTCTCAAAAACCCTAAATCGTCTTATCAAAACAGATCTAATTGCTGCCTACAAAGAACTTCTACGGCAAGACCTTTGCGATTTGGCCCTCAAAGTATTCCCAGCCGTTCAATCGGAATGTGATGTCCCTGATTTAGGGCTTTATGCTGATATGGTCTTAGCTTTGACCCGGACAGGTTTTGCTGAACCTATCGATGAATTGATTTGTGATTTGGAGAAAGTGGGAAGGATTGAGTGTGATGATAAGTCGCTGGTAAGGTTGGTGAGGGCGTTGGTTGAAGGTGAACAGGTGGAATCTACTGTTAGGGTTTATGAATTGATGAAAAAGAGTGGATGGGGTTCTAGATTTGAGATTGATGAATATGTAGCTAAGGTTTTAAGAAGAGGGTTTAAGAGATTTGGTAAAGAAGAAATGGCTGATGAAGTTGATCAACAATTACAGAGATCGTCCAGATTAGTGTAGGAGAAACATT</gDNA_template>
            <first_frame> T  S  G  T  Q  I  H  H  S  W  L  P  L  Y  L  Q  T  S  N  S  P  Y  N  I  L  L  *  L  F  H  H  Q  N  Q  P  P  E  E  K  S  Q  Y  D  A  V  H  E  A  T  V  D  L  *  L  R  A  E  Y  *  A  S  K  Q  S  K  R  F  K  L  *  N  E  L  K  E  L  T  L  L  K  S  K  L  K  S  Q  K  P  *  I  V  L  S  K  Q  I  *  L  L  P  T  K  N  F  Y  G  K  T  F  A  I  W  P  S  K  Y  S  Q  P  F  N  R  N  V  M  S  L  I  *  G  F  M  L  I  W  S  *  L  *  P  G  Q  V  L  L  N  L  S  M  N  *  F  V  I  W  R  K  W  E  G  L  S  V  M  I  S  R  W  *  G  W  *  G  R  W  L  K  V  N  R  W  N  L  L  L  G  F  M  N  *  *  K  R  V  D  G  V  L  D  L  R  L  M  N  M  *  L  R  F  *  E  E  G  L  R  D  L  V  K  K  K  W  L  M  K  L  I  N  N  Y  R  D  R  P  D  *  C  R  R  N  I </first_frame>
            <second_frame>  P  V  E  L  K  S  T  I  H  G  F  L  S  I  Y  K  P  Q  I  H  L  T  T  F  F  C  N  S  S  T  T  K  I  N  H  Q  K  K  N  L  S  T  M  R  S  T  K  Q  P  W  T  S  S  *  G  P  N  T  K  H  R  S  N  P  S  D  S  S  S  K  T  S  S  K  N  *  P  F  S  N  R  S  S  S  L  K  N  P  K  S  S  Y  Q  N  R  S  N  C  C  L  Q  R  T  S  T  A  R  P  L  R  F  G  P  Q  S  I  P  S  R  S  I  G  M  *  C  P  *  F  R  A  L  C  *  Y  G  L  S  F  D  P  D  R  F  C  *  T  Y  R  *  I  D  L  *  F  G  E  S  G  K  D  *  V  *  *  *  V  A  G  K  V  G  E  G  V  G  *  R  *  T  G  G  I  Y  C  *  G  L  *  I  D  E  K  E  W  M  G  F  *  I  *  D  *  *  I  C  S  *  G  F  K  K  R  V  *  E  I  W  *  R  R  N  G  *  *  S  *  S  T  I  T  E  I  V  Q  I  S  V  G  E  T   </second_frame>
            <third_frame>   Q  W  N  S  N  P  P  F  M  A  S  S  L  S  T  N  L  K  F  T  L  Q  H  S  S  V  T  L  P  P  P  K  S  T  T  R  R  K  I  S  V  R  C  G  P  R  S  N  R  G  P  L  V  K  G  R  I  L  S  I  E  A  I  Q  A  I  Q  A  L  K  R  A  Q  R  T  D  P  S  Q  I  E  A  Q  V  S  K  T  L  N  R  L  I  K  T  D  L  I  A  A  Y  K  E  L  L  R  Q  D  L  C  D  L  A  L  K  V  F  P  A  V  Q  S  E  C  D  V  P  D  L  G  L  Y  A  D  M  V  L  A  L  T  R  T  G  F  A  E  P  I  D  E  L  I  C  D  L  E  K  V  G  R  I  E  C  D  D  K  S  L  V  R  L  V  R  A  L  V  E  G  E  Q  V  E  S  T  V  R  V  Y  E  L  M  K  K  S  G  W  G  S  R  F  E  I  D  E  Y  V  A  K  V  L  R  R  G  F  K  R  F  G  K  E  E  M  A  D  E  V  D  Q  Q  L  Q  R  S  S  R  L  V  *  E  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142606" stop="141896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWNSNPPFMASSLSTNLKFTLQHSSVTLPPPKSTTRRKISVRCGPRSNRGPLVKGRILSIEAIQAIQALKRAQRTDPSQIEAQVSKTLNRLIKTDLIAAYKELLRQDLCDLALKVFPAVQSECDVPDLGLYADMVLALTRTGFAEPIDELICDLEKVGRIECDDKSLVRLVRALVEGEQVESTVRVYELMKKSGWGSRFEIDEYVAKVLRRGFKRFGKEEMADEVDQQLQRSSRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="142327" PGL_stop="142605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142327" e_stop="142605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="142327" e_stop="142605" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142327" stop="142605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGATAAGACGATTTAGGGTTTTTGAGACTTGAGCTTCGATTTGAGAAGGGTCAGTTCTTTGAGCTCGTTTTAGAGCTTGAATCGCTTGGATTGCTTCGATGCTTAGTATTCGGCCCTTAACTAGAGGTCCACGGTTGCTTCGTGGACCGCATCGTACTGAGATTTTTCTTCTGGTGGTTGATTTTGGTGGTGGAAGAGTTACAGAAGAATGTTGTAAGGTGAATTTGAGGTTTGTAGATAGAGAGGAAGCCATGAATGGTGGATTTGAGTTCCACT</gDNA_template>
            <first_frame> F  *  *  D  D  L  G  F  L  R  L  E  L  R  F  E  K  G  Q  F  F  E  L  V  L  E  L  E  S  L  G  L  L  R  C  L  V  F  G  P  *  L  E  V  H  G  C  F  V  D  R  I  V  L  R  F  F  F  W  W  L  I  L  V  V  E  E  L  Q  K  N  V  V  R  *  I  *  G  L  *  I  E  R  K  P  *  M  V  D  L  S  S  T </first_frame>
            <second_frame>  F  D  K  T  I  *  G  F  *  D  L  S  F  D  L  R  R  V  S  S  L  S  S  F  *  S  L  N  R  L  D  C  F  D  A  *  Y  S  A  L  N  *  R  S  T  V  A  S  W  T  A  S  Y  *  D  F  S  S  G  G  *  F  W  W  W  K  S  Y  R  R  M  L  *  G  E  F  E  V  C  R  *  R  G  S  H  E  W  W  I  *  V  P   </second_frame>
            <third_frame>   L  I  R  R  F  R  V  F  E  T  *  A  S  I  *  E  G  S  V  L  *  A  R  F  R  A  *  I  A  W  I  A  S  M  L  S  I  R  P  L  T  R  G  P  R  L  L  R  G  P  H  R  T  E  I  F  L  L  V  V  D  F  G  G  G  R  V  T  E  E  C  C  K  V  N  L  R  F  V  D  R  E  E  A  M  N  G  G  F  E  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0046F15.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142410" stop="142604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAWIASMLSIRPLTRGPRLLRGPHRTEIFLLVVDFGGGRVTEECCKVNLRFVDREEAMNGGFEFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 508 chains have been computed
$ 
$ memory statistics:
$ 1467736 bytes spliced alignments in total
$ 397 spliced alignments have been stored
$ 3697 bytes was the average size of a spliced alignment
$ 47216 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1888 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 560 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:48:30
-->
