<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 01:43:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12727" stop="13907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12890" g_stop="13607" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="730" r_length="715" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12890" e_stop="13607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGTTATGGGTCTTTTTTCCCTTCCTATATGGATAAATAAAAGCCCAATTTGGACCAACTCATTTTTGTCCATAATCCCATTCTTATAAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTTAGTAGCCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTC-AAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTATCCGATTGAGCTGATTTTTGGACAGCATATTATCCTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCATCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTGGTGATTTTGTTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>TGTTGGGTTATGGACCTTTT-TCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTG-TTTTTTCAGCAGCCAAAAAGAGAG--AAAGAG-AGATTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583272" ref_strand="+" ref_description="SGN-U583272 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147787311|emb|CAN64634.1| (e_value=3e-60) hypothetical; (*ATH) AT3G49550.1 (e_value=7e-54) | Symbol: None | expressed protein | chr3:18379186-18379629 FORWARD | Aliases: T9C5.140; ">
      <seq>gaaaaagtctcatagagagaaagtgagtgacaagtgagagaaggagaagggaagagcttgttaggtgttcttcatttcgggttcatcagcatccggagcaaggcgagtggggtgtggatatcttctcgaactcaagttttttgattaactgaacaatggaggtacttggaaaatctatggtagcagtgcctacaaatgttatatatctgtcaactattcttggccaagatggcccaaaccctgttcacaagtgtgattggaaatgtgaaaatgaacatgtgtgtgggaacatgttccgctgccgactaactgggctgacacacatttgcgacaaaaattgtaaccagcgaatattgtatgataaccataactctctttgcagagttagccaacagattttccctttaacacaagttgaagtgcaggctgtgaaaggtgtacggaggaagtttgatgctgatagttccccttctgatagctgcgcctttaagcgcagaacggatgcacatttccacccatcaccatttgagagatctttcactgctgttagtcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15379" stop="17667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15679" g_stop="15764" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15765" i_stop="16897" i_length="1133">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.674" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16898" g_stop="17367" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="556" r_length="469" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U583272" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15679" e_stop="15764"/>
          <exon e_start="16898" e_stop="17367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAA-GAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATCGTAAGTTTCTTCTTCTTTTTTTTCATGATCTTTTTGTTGTTTATTGTTTGATTTTGCCTGAGAATTAGTTAGTTGTGATTTTCATCATTTTTTTTTGGGATAATTCTGTTGTAGTTCTTCAGATTTGGTTGTAATGCTAACGTAAATGGTTGTGTGAGAGGAAATTCTATATGCTTGAGCTGAAATTGGAACTTTTTACTGTTCATTTTGCCCTTGTTTAGTCAGTTTTGTACAGGATCTTTTGTTTTGGGGTCGAAATTTTTTTAGGTTGAAAAGAAGGAATTCACCTAACCTAATAAAGAAATTCTTTTATGAAATACTTGTAAACAAAAAAAATTTCACGTATACAAAACAACAATGTAATTAGATTTGCTCTAGATGTGTAAATCAACAGAGCTAAGATTTGTTGCCAGTTAATTGTTAGTTTTCTGGTGAACCACTCTAGCTTGTGGTGGGGGTAGGAACAGAGTTGGCAATTGGGTAGGTTGGCTCAAATTTGGGCGGGTCAAAATGGGCCATAATACTAAACGGGTCTAGACCCAATTTAATTTTAGGTTGAATTAAATTTGGATGGGTCAAAACTCAATCCAATCTTGGGTTGGGCCAACATAACAAACGGGTCTATACCTTGGGCTGGGTCAAAACGGGTCAAGTAATGAGTCATAATCCATGCTTAAATTTTTACTGAAGTGTTAATTGTTTTTCTGAAATTTTTAATACATAATAATTTGCATATTTTTATTATGGCTATACGTAATATATCAAAATAAAAATAAAGTCCCTTGAAAATATCTTGACAAGATTTTTCATTAGTCAATTTAGGCTACATATGAATTCAATTTTGAATGAGTTGAGTTGAAATGGATTAAGCTAATAGATGTACGGGTTATTTTAAGTGGGTTGGGCGGGTTAGGCTTAATTATGCCACCCTTGTTTTGAGTCTCCACTAGCAATTGCTCGAGTATAAGGTTTTATATTTTATGTTCTTTACTGAGGTTTGCTTAGTCACCTAAATGTTGCTTTTCAGTTTCCATAGGAAAATTTTATTAGATGGTTTTTGTCCTTCGAAACAAACAATTATATTCCATGATCCACCCACCAATCTTGACGGATCTTGTTTATCAAGTCTGCAGAGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</genome_strand>
        <mrna_strand>GAAAAAGTCTCATAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGGGAAGAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCGGAGCAAGGCGAGTGGGGTGTGGATATCTTCTC-GAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTTGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGACTAACTGGGCTGACACACATTTGCGACAAAAATTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCAACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAACGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569136" ref_strand="+" ref_description="SGN-U569136 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gctgcaggtgagaatgttgatcatcagaccaatgggaatgtcaaagcaaaagctaagaaagcctcggctatggaacaaaagaagggcaagaagggagcaaagataccaaagaaagtaaaaaagaaacctcaagtgcagaagaaaagcaagagcaaaaaataagatatgactctacatatttcatttcgtttgatatgtattctatttattttcttttcttattttctttctttttcttctgttctttgtatacatatactgatcatattttttaaaagctaatgaaagtagtctttaggaagctatataattggtagaggccacataatatgtattatttgcaagattttctcatgattatcctccatattaccataaaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="-" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="24064" stop="23007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23775" g_stop="23707" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23706" i_stop="23626" i_length="81">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23625" g_stop="23307" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="385" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="-" ref_id="SGN-U569136" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23775" e_stop="23707"/>
          <exon e_start="23625" e_stop="23307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACCAGAATGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCGGTATGCTCTGTTCTTTTTGGTTACCACTAACAGTTGCTTCACTTTCTAGATCTCAAATTGTGATCCAAGCTCGCTTTGCAGGCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</genome_strand>
        <mrna_strand>GCTG-C-AG-GTGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG.................................................................................GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574359" ref_strand="+" ref_description="SGN-U574359 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>taaaatctgaaatcaaatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggcacctgctgcgataatcttgtcatccggatctgaatctcctgtaaataacaaccacctaagtgatgatgaggatagcatcaatctgagtaagctgtttcagaaggataaaacatcactttcagaggaaaaatgtagtcaggatggacatggatctcaactcaagaagacgtccgaagtaaattctccgattaaaaatgaagaagtagatcgcacacctactaggaagagaaagaatgaaaaccagagtgaaaaaaaaggaaaaggcactgacaaggctttaacgaagagaagagcattggagaagccttttacagataaagaacccagtcattcagtctgtacgttgtcatcggattctgagtctcctcatgatggcagttccatgaaagtggaggaagtccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="-" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31090" stop="26307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30790" g_stop="30579" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30578" i_stop="29548" i_length="1031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29547" g_stop="29289" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="471" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29288" i_stop="29188" i_length="101">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29187" g_stop="29126" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="533" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29125" i_stop="26694" i_length="2432">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26693" g_stop="26607" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="620" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="-" ref_id="SGN-U574359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30790" e_stop="30579"/>
          <exon e_start="29547" e_stop="29289"/>
          <exon e_start="29187" e_stop="29126"/>
          <exon e_start="26693" e_stop="26607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTAGTTTTGTTGAAATCATTGTTTACTGTGTATCACTTCAAGCCGAAAACAGTGGGTGGGGACTTGGAAAAATACTAGTAATGAAAATCCCTTTTTTGTGTAAATTTTTTTGAACCCTACCTTTTCTATTATTCACCTAGATAAGTTTGGATAGTTGTTGCATATAGTTACCTATTGTATTGTTTGTTTTAATGAATACAATGCTTAGATATATTGCATTATTTTCTGTCATACATAATGCCACACATCAACAATTTGAAGGACAATTCTTCATGAAAAGGTACTGGGTAGAGCTATTACAGAAAGGTAGGGTAAGGGATAAAATAAGATTATTAGATAATAAGCAAAGAAAAAATAAGGTAAAAATGCGATCATACCAAATTGGTCGTTATACAACTGAAACTTTTCGTCTTTACCTTCTGATGAATTCAACAATATGATATGTAGAATTTAAATAATCAAAACAAATATTGTATTTAAACTAACAACACAATGCAATGCTAGCAACAACCATCCAAACAAGCTGTAAATGGAAAAATTTAGATGTATAGTATAACCATTCACTATAACTTAATTGCATCCCCTTATGCTTCTTAAAGGCATTATTCAAGTATAAGTTCTGCTGTTTTTATATAAATTCGTTCTCCACACACTTTTGTTGAAAGACTGGGCATTGTTTAGTTATTATTTGTTCTGTTGTTGTTCCATGTTCCTATAACGACCAAGACAATCTGATGTTAAAACAAATGCAGGCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAGGTATTAGCTAATCCATTTTACCGAATGAATCAACTGCATCAGATTGTAAGTGTGGAGTTAAAGAAGGGCCCAGTAAAGATCTTCTCTTTCCAATGATACAGGAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAAGTAAGGAGTTCCCTACTATCTGTATTTATTTTTTAATGTACTGAACTATCATCAGTAAATTAATTTAGTAGTCAAAGTATGTCAAAGAAGCGACTAGATCGTTCAACTTGTACGGTACCAGTTGACCCTATGTTTTTGCTCATATGCAGCTTCAATGAGACCCTTGATCTTTGGTTTTATATTTATTTTGCCCCTATCTCTAGCGAGCTCTATACCAATCATACTTTGGAGATGTCGCAGTCAATGATTGCTCCATCGATAATCTTCAGTGAGTTGTGAATTTTGTTCAATGAAGCAATACCAAATATGCCCCTAGAAAGATCAGACCTACGCCACGAGCTGATGACAACCATGCACCACCTATATCCCTGTTCTTCAAGGCACTCCTATTTTTCAAGAGGGTTTGCAGCAATCAAGCACAAGAAAATAGTGACTTCATAAGCTGATCAGTCAACTATTTCGTCATGTTTTTTTAAATGAAGAGTAAATAGTGACTTAGGCTGGTGCGTTTCTACTTCAGAAGTCATCCATATTGTGAGGAGATTGGTGGAGAAATATAGGAAAAGGAAGAGGGACTTAAATATGGTGTTCATTGACCTTGAAGAAGCCTAAGATAGTCCTGAGGGAAGTCCTCTAGAGATTCTAGATGCTTGGAGAGTAGAGATGTGTTGGTGACTTGCATTAGGGCATTGAAGGACATGTATGATGGATCCCAGATTTGGGTTAAAATGGTGGGAGGAGACTCAACAATTTCCGGTTCAGATGGGGTAGCACCATGGATCAATACTTAGCCTATGCCTATTTTCCTTGGTGATGGATGAATTGACATGATATATTCAAGATGATGTGCTATGGTATATGTCATTTGCGGATGATCTTATATTGTTTGATGAGACATGCAATAGAATCAATGCTTGGTTGGAGTTGTGAAGTCAAACTCTAGAGTTCTCTAAACTTAAGGTAAGTTTTATAGTGTGGTGGTTAGAACGACTTTGTTGTGTAGGGCTGAATGTTGGTCAGTCAAGACCCCCCATGTTCAAAAGATGCTAATTGCGGAAATGACAATGTTGAGATAGATGTGTGAGCATATTAAGAGCAATAAAATTTGGAATGAGGATATCCAAGTCAATGTGGGAGTGACCTTTGTGGTGAACAAGATGAGAGTAGCTAGATGAGATGGTTTAAGCATGTGGAGAGGAGATGCGCAAATACCCAGTGAGGAGGCATGAGAGGTTGGATATAGTTGGTATGAGAAGAGGTAGAGGTAGGCCTAAAATGTATAGGGAAAAAAGTGAGTTTGACATGCAATTATGCAATTTTAGTTTACTGTGGACATGAACTTAGATAGGAGGGTGGAAGTCGTGGATTAAGGTAAAAGGTTAGTAGGTAGTGGAGTGTTGTCTTGCTTTTCAATGGGTTTAGGCTTGATGGTGTATGTCGTAGTATTAGCCTTATTCTTGTAGTGTCTTGCTGTTAATTTCTATCCTCATATGTTGTTTATGGTGTTTTGGTTATTCCAATTTTGTTGTTTCTAACTGCTTACTTATTAGGTATGTTTTTCTCACGGTTGTTTTCCCTTTTCATACCTACTTTGATTTGTTGTACTCAACAGAGGGTCCTCCATAAACAGCCTCTCTAGCTCCACGAGGTAGGAGTAATCAGACCCCACTTTCACTTGGTATGATGTTAAAGAGTAAATGGATAAAAGAGCCTAGACATATTAGTACTATTATAGCTTTCTGATAGAATAGTTTTTCTTCTAAATAGTTTCTTATAAGCATTCACTGTGGAAAATGTCTGTGAAATTGCCTTGAACAGTGAAACTGCACTTCTAACTTACCGTAATCAGTTTCTTGATAGTATTTCTCCTCTTATGAAGCAAAAGATGTCCACTAGCTAGCAGTTTAGTTTGGCTGGAAATAATGTTCTAGGCTTCAGGAACAGCCAAGGTAGTTAAAACCTCTTGGTATACTAGAATGATGCAATTGCTTAACGTGGTAATTTATTATATACTGAAATGGCTACTTTACCTAGAATCTGTTCTTCGACAATTTATTTCATACTTCAATTAACTCGTCCAAAATCAATCAGATTAAAACATTTTGACACATCTCTCCTTACCCAATGTAATCTGTTAGATTCATACAAACACTTTTCTCATTCTAGGTATCAGTAATGGTAATCCCACATGTTATCATTAGTTTTGGCAATTGCTACAGGTGGTGATTTTACTTTGGCCATTCTTGAAATTATCACAATATGGTGTAGGCATCTCGTTTTCTCCTTTGATCAGTTGCCTGGAGTTCACAGACATGTAGGCTTAATCCTTAGAGTCTGTGGATCTCCCATACACTTCATTGTTAACTACTATGCAAGTATTGTTGACTATAGTCATCTTAGTTTGATCTCAATCATATATTTGGTTCATACAGGAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</genome_strand>
        <mrna_strand>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG.....................................................................................................GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588293" ref_strand="+" ref_description="SGN-U588293 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcacccctgctcacaagccttttcccatgttaaaatctgaaatcaagatggagggaaaataatttccagtatctggcctttaacgatatacatatattacatcatattttcactttaactactcacactttttttttctctctcacaggcaagggttttagtatccactgaaattattctctcaaaacttagaaaatggctgattctagagaagaatctccagattggctccgcagttttcaggtataactgttttgatttcatcggaattttcataaatttgctcgctatgcacttttcaaagtcgattttatgcactgaatctatgtttaattagttgagcaatcatttgattgagttttaaccgattttgaacatcagtttgattggtctttcagctgcgagattcaaactttgatcaattcaattttttgttcacagtgcttcgtggcggaagtagattcaagtacatgtatatagttttagagcacatttgggttagggtatgctaatttggggcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="-" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31119" stop="29997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30820" g_stop="30297" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="-" ref_id="SGN-U588293" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30820" e_stop="30297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAA-ATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</genome_strand>
        <mrna_strand>GCACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAGATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAAGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573383" ref_strand="+" ref_description="SGN-U573383 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=1e-77) unnamed; (*ATH) AT2G39795.1 (e_value=4e-49) | Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr2:16604065-16605240 FORWARD | Aliases: None; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-48) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>cccaagttgaagttgaaattccgaaaaaaaagtgaagtctcctattaatagaacatgtagcgtaaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttttgctataaatgtaccatggccacttaaaatagaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39203" stop="41130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39503" g_stop="39897" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39898" i_stop="40105" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40106" g_stop="40449" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="739" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40450" i_stop="40530" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40531" g_stop="40830" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="1039" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U573383" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1039</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39503" e_stop="39897"/>
          <exon e_start="40106" e_stop="40449"/>
          <exon e_start="40531" e_stop="40830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTG</genome_strand>
        <mrna_strand>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAAATGTACCATGGCCACTTAAAATAGAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573385" ref_strand="+" ref_description="SGN-U573385 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=9e-13) unnamed; (*ATH) AT5G05990.1 (e_value=2e-11)  Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr5:1806798-1807908 REVERSE | Aliases: K18J17.... ; ">
      <seq>gtaaaccctaaacccaagcctcctcttctccttaaaccctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggtttgattttccccaattctctttttcatgtcgcagatgaattttaatactattaattaaaatcgcctaattatggattctaccactgatttgtttctgtttttaggtggattttatggaaaattcatgctgtttttagttttaatcaaaaaaatatatatgttactggattagcagattttgtactgttttttcattgtgattgcaggttgaggaggctcctgagggtttccccttcaagattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttaggntctctaanagaatggactgctttggantttggtatcacagcttttgctganga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39264" stop="40671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39564" g_stop="40371" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U573385" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39564" e_stop="40371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGA</genome_strand>
        <mrna_strand>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGNTCTCTAANAG-AATGGA-CTGCTTTGGANTTTGGTATCACAGCTTTTGCTGANGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573384" ref_strand="-" ref_description="SGN-U573384 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=3e-34) unnamed; (*ATH) AT5G02050.1 (e_value=7e-28)  Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr5:402984-404304 REVERSE | Aliases: T7H20.100... ; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-25) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>acgaggcctaaattctctacctctgcgaaaatggctgtcactaacatcatcagaaggactgcttctcaagttgtacccttggctgctcgggtgatctttagaacacagagttaccatcatcgatcctctgctctcttatccaccatagttaaccgtagtgctgcttctagaaacttctttcggagctcagcaccgtccacccttcatttctattctaccaagaggcccagttctgatgaatcactcctcaaagtcattcagtccgaaatccaatgtgccgaggaatccgacgaacaagacgaggttgaggaggctcctgagggtttccccttcaagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttacgaaggacctgatttcacggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaggggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttatttttgctatagatgtaccatggccacttaaaatagaatgttggtgaattttatttatacataagagttagccctcgcttttatcagctagttttgtttgcacttgcagcagcaggttgttgcttgttgatgagattgcatttccattgttattgtcaagtcaaatcactttgcgcatgatattgctttcgcttaacatgatttctcaaacatgtattggcttgcatattcatttgtgtctaagtggatcctcgattgtggggtattactctttctgtgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39301" stop="41372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39595" g_stop="39897" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39898" i_stop="40105" i_length="208">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40106" g_stop="40138" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="336" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40139" i_stop="40372" i_length="234">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40373" g_stop="40449" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="413" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40450" i_stop="40530" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40531" g_stop="41072" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="954" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U573384" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573384" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39595" e_stop="39897"/>
          <exon e_start="40106" e_stop="40138"/>
          <exon e_start="40373" e_stop="40449"/>
          <exon e_start="40531" e_stop="41072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGTGTATTACTCTTCTTGTGCTATG</genome_strand>
        <mrna_strand>ACGAGGCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG................................................................................................................................................................................................................GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG..........................................................................................................................................................................................................................................ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTACGAAGGACCTGATTTCAC.................................................................................GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTTTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAAC-ATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGGGTATTACTCTTTCTGTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588054" ref_strand="+" ref_description="SGN-U588054 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=3e-55) unnamed; (*ATH) AT2G39795.1 (e_value=6e-40) | Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr2:16604065-16605240 FORWARD | Aliases: None; (*SWP) sp|Q8W487|YB95_ARATH (e_value=5e-39) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; ">
      <seq>gattgaagatcatcctggacaacaaactattacattgacaagagaatatcaaggtgaatctataaatgtggaagttcacatgcctgaccttgttaccggtgatgaagatgagaatgacaacggtggtgaggatgatgacgaagggtccaatcagtccaatattcctctagttgttagggtgtctaagagaaatggacctgctttggagtttggtatcacagcttttgctgatgagattgctattgacactttgtcaatcaaagatcctaatgttgctgaggatcagattgcttatgaaggacctgatttcacgtgagtcttgatgtttaatttaacaaatttcttatctgtttttcattaattactaatatagaatatatatataatcatcagggatttggatgagaacctccaaaaggctttccacaagtatctggagattaggggtatcaagcccagcacaaccaacttcttgcatgagtacatggtcaacaaggatagcagagaatacaagatgtggcttaagaatctgaagaaattcatcgaggcataggttccataagttttgattgatgttttagtaagggctagctacttcgtaatgtctgtcaatgatgtcaaaataccgtgatttttagtgtttttttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39838" stop="41090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40138" g_stop="40790" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U588054" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40138" e_stop="40790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</genome_strand>
        <mrna_strand>GATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAAGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567058" ref_strand="+" ref_description="SGN-U567058 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157336033|emb|CAO61863.1| (e_value=0) unnamed; (*ATH) AT5G05970.1 (e_value=0)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains similarity to regulatory protein Nedd1; contains Pfam PF00400: WD domain, G-beta repeat (6 copies, 2 weak):19804256:gb:AV785466.1:AV785466 | chr5:1795354-1799449 FORWAR... ; (*SWP) sp|Q3B7M6|NEDD1_BOVIN (e_value=1e-35) Protein NEDD1 OS=Bos taurus GN=NEDD1; ">
      <seq>taatcaaacacctaaattacaccccacttcactcttctctctctttcccttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactaatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaatcttatacttcacaaccttgcttctggtgcaaaggctgctgaactcaaggatccaaatgcgcaggttttgagagtgcttgattattctaagattagcaggcatttattggtgacagctggtgatgatggatctatccacctgtgggatacaactggtcgcagccccaaggtttcttggctaaagcagcattctgcaccaacttctggcattagtttctcaccaacaaacgacaagattgttgctagtgttggtatggataagaagttgtacacttttgactcagggtcaagaaggccgacattttgcattccttacgaggcacctttttcttcactggcatttactgatgacggattcactctggcagctggaacaagtagtggccgggtagtattctatgacgttcgtggaaaaccacaacccttgactgttttacgtgcttatggaaattctgaggctgtgacaagtctatgctggcaaagagcaaaacctgtaattgtcaatgaaaacaattgcactacagaaatggctctcctgggcagtgctgtggaggattcaattttgatgcctgacccacttcctgctatgatgtcatcaagcctagcaacttctatgacaacatcaggttcgagaaccactgttcgttcaggttctgtggactcattttcttttccagcaggcattacaggatctacatctgggacaacaggtttatctccatccgaggaaacacccatacgaagtagtttatggaaaggtggatctttggcaagattacatgctcctcgtaacttcaaggatgatatggaagttttttctcctcttgttgaagttcagccaattacaccttcacttgataagttgtgggatgatcaggaaggtttcaaaaaggattttgataagaagtcatctttgctatttccttcttctctaaggtttccccttccagttgagggtggcaatgagaatcgccccatatttgattggaaatcaagttccttacccaaacaggaggatgcttcttttgcacagttgtcttccactccaacatcttctcgtggtgatgattcttcctccataactcctccagaagcttggggtggtgagagattatcggatagattatctcatcttcggcagtcaggaaatatgccttcccgttttgcaatctcgacatctggtcctcttgcaccaggatctatgttatctggattacaggataattttcctgcaactcagagtatcggctctttgactagttctactctaagtttggctaatttgcgcataaaagaaaatccaaatgaagaaactattctaggatcttcagaacatgcgagttccacatccttttcagttggaacaaaaggcattactgggcagggtactcttgatactcttggttcaactgtatccctcccacgaagattttccagttatgctgagagaataagcactacaccatccttcagtgatggaaccctttctgttggttctccaaaaactaagaaaactggagctgaaacaagggaagagcttctgaatagcttgttatctaggtcggacacgtcgtctgctacagcagctggtgctttccaagcaataaatggtgaaattaagcaatctcaaaagtccacactgcctgaattgcagcagggaagttcctttacactccagctgttccaacgtacacaagaagaaactctttcttcccttcaaaaatccattcacgaggatatgaggaatcttcacttagatatcttaagacaatttcatatgcaagagatggaaacttctagtgctatgaaattgatactggaaaaccaagcagagctgatgaaagaggttcaattacttcgaagggaaacacagcagcttcgacagttattatgaccagactagctaaaagtcttgtcattacgtattcttttagttttagccatgtacgcaatgctgttttaggagatttgtactgacagttgtgtagtgagtagcgagtgcggaagtgttattgtgtgtttatctaattgtgggcgaatttgggggtttattttaccctaatatagtaaaggagtgtgtgatggctgatcaataacagttaagagtgctgttatggttgtgtacagaaagttggctaggccaatttcagaaatttaatgtacagaactacagatcatctaattcactttgatttaaaaaacatccttccaagttggaggaggtttattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="-" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49258" stop="41233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48959" g_stop="48695" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48694" i_stop="48626" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48625" g_stop="48513" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="378" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48512" i_stop="46665" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46664" g_stop="46404" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="639" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46277" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.406" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46276" g_stop="46172" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="744" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46171" i_stop="45313" i_length="859">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45312" g_stop="45247" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="810" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45246" i_stop="45120" i_length="127">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45119" g_stop="44898" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="1032" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44897" i_stop="43936" i_length="962">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43935" g_stop="43381" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1033" r_stop="1587" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43380" i_stop="43032" i_length="349">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43031" g_stop="42435" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1588" r_stop="2184" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42434" i_stop="42232" i_length="203">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42231" g_stop="42055" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="2185" r_stop="2361" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="42054" i_stop="41980" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41979" g_stop="41532" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="2362" r_stop="2809" r_length="448" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="-" ref_id="SGN-U567058" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48959" e_stop="48695"/>
          <exon e_start="48625" e_stop="48513"/>
          <exon e_start="46664" e_stop="46404"/>
          <exon e_start="46276" e_stop="46172"/>
          <exon e_start="45312" e_stop="45247"/>
          <exon e_start="45119" e_stop="44898"/>
          <exon e_start="43935" e_stop="43381"/>
          <exon e_start="43031" e_stop="42435"/>
          <exon e_start="42231" e_stop="42055"/>
          <exon e_start="41979" e_stop="41532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAGGTTAATTCATTCTTTCCAAGTCCCACTTTGCTGTATAGCATCTTATAGCTGCAATTTGCTTTTGGTTTTTGGAATGATGCTTTCTTTTCTGATGCCATTGTTCTTTGTCTGATTATCACAAGATCAGGTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAGGTTTGTTGACATTCTGGTGTTCTGAGATGATAAAAATTGATTTCATTACATATTGTGTTGTGCCTAGATCTGTATTATTTAAAAGGTTTATAACTGGAGATTAATAGGGAATCCCATTTCTTTCTCCTCGCAATCTGTATTTGCAAGTCAGATCTCATCCACTTATTTGGTATAGGCTAGCTATTGGCTATGACATAGAACATTCTGAAAGAAGAATCACCAATCCATTTGCAACTTACAACTGTTGCTTTTCAGAGGGCTTGACGGTCTTTTACTCATAAAAAGACATTTAGCACTACTCTTTGAGGGTTTGGTAGTCAAAACTCACAGAAAGAATCATTATTACTGCAATATATGCTGTGCTGTTAGAAGCGCTATACGTTATAGTTTGTGGACTTCAAAGTTGGAGTCTGAGCTTGATATGCGACGCTTAAAACACTGAATAATGGTTATGAAGTTTCCAGAGAGTTAATTCGAAACCTCCCAGTCCCTGTCTCAGTACATATTTTGCCTCCCTACCTGCTGACATTCAGAACAATTCATGGTCCTTCTACCTAGGAAAAGAACATGTCATGGTCCTTCCCCGATGCTCTTCTTTTTCCTACTCTTCCTTCTCTCTTTTTTCTTTGAAAGATGAGACCCTCTCTGCAATTCTTTCCACTTCCCATCCTCGGGCATGCTTTCATAGCCATAATGGTTAAATTTGCCAAGTGCAATGGTATCTTACTCTGCATTTTATGTTAATCTTTATAATACCCTGGTATAGTGGTACTCTGGGTTGATGTCTCTCAAGTGTACCTGTCTTGCTTGCTGTGCATCGTTTTATTGGATAACTGATAATTGTTTTTACCTTTAAAAGGTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAGGTTTTTTCTCTATTATACTCATCAACTGGTAGACATATTGTGTACCTGTACTGGAAGAACTGTAAATCAATCCTCTTGCCAAATGATGGAATCATTTACCGGTGTGGTTTTACTGTTATGATTGCAGATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAGGTATTTGATTCTTCTTTTCTTAATAAAGTGTTTTGTGTTAAATAGCAGTTTGTCCTTGACTATGTACTTCTATTATGTCGTTTCATTACCTTGGTTGGCAAAACATGAGAAAGGAAATGAAAAGGAGAGAAAAGATTCAGTTCTTATTAACAAGGATGGAGATATGCGACTGTATAATAAGCCCATATGGAGTTGGTATGCATTTATTCTTAAGTCCACTTGTTGTCTTTAAATTGTTTCATCCGTGATGATAGAGGTGGATATGCATGAAATTGGTAATTGTGCAAGAATGGATGAGGAGATTAGGCGGACAAGTAGGTGACCACGGTTCTTCCAATATGGCATGTAGATTTTGAGAGGTTAGAGATAGCCAGCATTTGCTTCGGGGGAGGGGAGGTAGTCCCACAAGCTATTGACCATCTATGATATGCTCAGGGTGCAGGAATTGGGTACAAAAGTGGCACATCACTTTGTCAGGCATGCCAACCAAATTTCTGGTTGGTCAAATGTGGATAGAATTGAACACATTTCTCAATTTCCTAAAATCAAAGACATTGTTAAGATTCCTTGTTTCTTCCTTGGCTAAATGTTTCTTTGTGGCATTTGTGTATCAATAGTAGACCAATGTCATAATCTGATTATGAGTTGGAAGATGGTATAATGTTGCCTCTTGGCTTGGGCAAGGGAGCTGGTCTGAGAAGCTCTTCCTCTTATTCTCTCTCTCTCTCTCTATCGCTCAGCAAAATTAAACAGCATGGTGTTTCTGTATCTATTTGCATATCAGTATAAATCTACCAATGGAATCCGTGCCGATATTCTGCATCTTTTAGTATGTACTGGCTGACCTTCATATATTTTGTTTATCAGCTTGTTAACTTTAGTTTTGTTCCTCAGTACTGACAGTACCTTTTTTACTACTCTGATTTACTTCCTCTTACTAGAAAAGTATGATGAATTTACAGGCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAGGTTTGTATCTTGTCTGGTTCATGTGCCTACATTTATATTCTTTTGCAAAACAAATTATTTCCTTGGTTGCAGGAAATATGGTGAAAATGTGAGTTGCTCTTCTATATACAAAAATGATTACTTGTTTGTAATTTCCTATGTTGTTGGATGCAAAATGATGCTGTTGATATCTAGTTGAAGTAACTAATTTCTTAAATCCTTCATTCTTGGTTGCTATATAATTTGTGAAGTCAGTTCAAAAAGTGGTGTCAGTATTCTGAAGCTGAAATCAATGACTGGGTTTAGCATTAAAATGCATGAGTTGTTATCTTTCCTTGACAAGTATTTCATATCTTTGATATTCCAGCAGGAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAATGTATGAATCAGGAAAACTTGGTAGTTCCTATCTTTGGCATCATTTGTTATGCGTCATCATCATGGATGTTTTCATCTTTTGTGTTTCTCGAAGAGAATCTTGGAAGCATGAGCTGGTGGAAAGATCCTTAATGATGAATCATTCCAAATGACAGAATTATCTTTTTAGTAGAAAGTTGTCATTTGACCTATGATTTTTTTCAGGGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAGGTACATTTGTTAACTTTGCACTTTCCTAGTTCTTCTATTGGATCAGTATCTCTTAGATTTGCAAACATTGTGCAGATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCATAT</genome_strand>
        <mrna_strand>TAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA.....................................................................ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG...............................................................................................................................GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG...............................................................................................................................ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG.............................................................................................................................................................................................................................................................................................................................................................GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT...........................................................................................................................................................................................................GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG...........................................................................ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596878" ref_strand="+" ref_description="SGN-U596878 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344198|emb|CAO69131.1| (e_value=3e-75) unnamed; (*ATH) AT5G05970.1 (e_value=2e-66)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains similarity to regulatory protein Nedd1; contains Pfam PF00400: WD domain, G-beta repeat (6 copies, 2 weak):19804256:gb:AV785466.1:AV785466 | chr5:1795354-1799449 FORWAR... ; ">
      <seq>gcttcttctgaaattcaaatctgtaaactgtatatttcacaatccaagaatctcttcatagatgaattctacagattcgattaagacccttttggctactactggcggtgacactgttaagctttttgacctcactttggaaccccgtgatccctgcattcttagctatactccttcccctggattccaagtcaattccgtcaagtggaatcacactagttagtttcccctttctatcatgaatttacattctttttgcaaattcgatttaactttgggtgttgcagatttggtggtggcaagcgctggagatgacaagaagatatctttgtggaggaaaaatggacagagtttggggactgtaccactggccggcactgatagtgctgacaatatcgaggagtctatttcaacagttaactttagcagcaaagcatcccgatacatatgttctggaggtagtggccaagttatacgaatatgggatttgcagcggaagcgttgcatcaaatggttgaaaggtcataccaatactattagtggtgcaatgtacaattgtaaagatgagcacttagcttctatcagtcttaatgggaaatctatacttcacaaccttgcttctggtgcaaaggctgctgaactcanggatccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="-" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49211" stop="46109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48912" g_stop="48513" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48512" i_stop="46665" i_length="1848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46664" g_stop="46410" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="655" r_length="255" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="-" ref_id="SGN-U596878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48912" e_stop="48513"/>
          <exon e_start="46664" e_stop="46410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAGGTACTTTTGTTTACCTTTTTACTTTTTTCGCTGCAAATCTAAGATAGTTACTTTGTTGTCCTGTTATCGAAATGTAATAATTCCTTAATTTCCAATTTTTTCAATGGATTTTGGCACAGATTTCTTTGAAAATGGTGAATTTTGAGAGGTTAAAGATATGTTGTAGTTTTGACCAACTTCATTTTTACCTCTATTTGCTGCTAAAGTTACAGGAAAATTTGTGCTTTCATATGATAGTTTTTCATTTAGAATGCACTGGGCAGGCCTCAATGATGTTCTCACATATTAGAGAGATTTCTTAAATATTATAGCGTACTGAATAGCACATTTCAAAAAGAGACATTGTAGCACTCTGAAACTATTGTACACATGAGTAGGCTGCTTTTGCCATATACATTTTATCCAAGTTGCTCGGACTCTTCACTTTCGATGCCGCACTAGTGTCGACACAATGTTGGTGTGGTGTGGGATCCGTACGTGATTTGGTCAACCGGTTTCGGGTATTTTGACCCAATTAGAGGGAGAAATTCTGGAAAGGTTTCATGATTTATGTATTCAAAACAAAAGATAAGGTGACATTGAAGAAGATGGAATACCTCGTATATATAAATTTATATTTACTCCCTTTCCTTTTATATCCTGCCATGATTCTCCTTTGGATCAATAGTTTTCTAAAGTTCACCACATAATATCTCATAATTAGGTTTAGTAACTCTAATTTAGATACATCAATTATTTTTAGCTGAATCTCCGCAGTTGTATCCATACATCGATCCGTATCCCTGATCTTAAAATTTAGATCATAGAGGATCTAACCTCTAGATCCGCACCCACATTGGACACCTGCATCTGAGTCCGGCAACTTAGCATTTTATGCAACATGGATACTTCTGGTTGTTCTCATAATACAAAAAAAAAATGGTAGGCTGAAGGGGGGAAATATTTGAGCTGTTTTTATTTATAGTAGTAGCTTCAAAAATTTATTTTTCCCTAATACAGTAATTTCAAATAATGATCATGTTAAATTGCCCTGGGGCATTGATCTAGTGGTAAGATATCAACACATGATGTTTGGGTTAGGTGCACGTCATGGGTTCGAACCCGGTAACAGATAGAAACCTAGTGTTTAACTTTAAAAGGATAGATGGCGGGCCCATTCTCTACCGAGTTTTGAACCATTTGTAGTGGACCTATATATGGGGGATAAAAAGAATTATTATGATAGATTACTCATGTATCATCTAGTACTGTTCTTCTATAGGGGTTCCCCTATTTTCAGATGTTGTACGGTAAGTTCTCAAATACTGTCCTCAGTGTTAAAGCACCAAATGAAAAGTAGACATCAACATGACATTGTTTGAACCATAATAATTTTGTTAAGAGGAAGCCAAACCGATGTCATTTTTGCTAAATTAGAAAAGCGTGTTTGCGAGTGGCTTATAAGAATTCCATAATTTGCTATATTTACTGATCATAAAAGAATACCGTACTTTACAGCTTTTTATGTTGAATGCATTTGCCTGAGATTTTGTGTTCGCCTCTGGGTTTGAATGGGAGAAAGATAGGGTTTGGTCAGGCATAGAATGAATCCTGATTGTTCGATTATCCTATGGCATATATGTTTATGAAAGAAGGATGCTGCATAAATGTGTGCTCTATTGCTATCCTGTGGCAAAAGGTGACGATGATAAGAAGATTGGTTGGAATAAAGTTGGCTTTCTATCCCATCCCCCATTACCTAACATGGGTCTTCGGTATAGGCTGTCAACATTTTTTTGAAGCCCAACTTGTGAAGTGGGCTGTCAATCAATTAATTATCTACAAGTAGTTCATTTCTATCACTTGCAGGAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAAT</genome_strand>
        <mrna_strand>GCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAAATCTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCANGGATCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587870" ref_strand="+" ref_description="SGN-U587870 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctaccctaggcataaaagggtcactgtaacgattcaaaaaaaaagaatgatataaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataagtaaataaataaaatagatttgtatttatttattttaaatgttatttgactaattcttgaattagtctcctaatccaaatagtcctctctctctcacgcttcttaactccctctctcacgtcctccatcttcctcacattatttctgacaaaacatcaacagttttcatgcttgaagaactaacaaaaattttttaagcaaaagaaaaagtaatcaaaacgtcaaggctaagagaggtttgtcgagagaggtgtacgttgaagtgaattgggagtgctttggaggagttttccgggtaacaacattaaagtttgaacatcgattaaggtatgagttttcttctctctcggtccctttcccaagagacctcttaaggttcaagatattcattccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C03HBa0034A02-lvvva/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C03HBa0034A02.1" temp_strand="+" temp_description="C03HBa0034A02.1  AC238562.1 htgs_phase:2 submitted_to_sgn_as:gi|260903613|gb|AC238562.1| upload_account_name:jianfeng-ren Solanum lycopersicum chromosome 3 clone C03HBa0034a02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="51176" stop="52278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51480" g_stop="51978" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="523" r_length="499" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C03HBa0034A02.1" gen_strand="+" ref_id="SGN-U587870" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C03HBa0034A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51480" e_stop="51978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAA-TTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCAAGAGACCCCTTAAGGTTCAAGATATTCATTCCGAAAAC</genome_strand>
        <mrna_strand>TGTAACGATTCAAAAAA-AAAGAATGATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAATAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTCCTCCATCTTCCTCACATTATTTCTGACAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGCTTTGGAGGAGTTTTCCGGGTAACAACATTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTCGGTCCCTTTCCCAAGAGACCTCTTAAGGTTCAAGATATTCATTCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12890" PGL_stop="13607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12890" e_stop="13607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="12890" e_stop="13607" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12890" stop="13607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGGGTTATGGGTCTTTTTTCCCTTCCTATATGGATAAATAAAAGCCCAATTTGGACCAACTCATTTTTGTCCATAATCCCATTCTTATAAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTTAGTAGCCAAAAAGAGAGAAAAAGAGCAGATTTTCGCAGTCAAATTTCAGCCATAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTATCCGATTGAGCTGATTTTTGGACAGCATATTATCCTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCATCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTGGTGATTTTGTTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> C  W  V  M  G  L  F  S  L  P  I  W  I  N  K  S  P  I  W  T  N  S  F  L  S  I  I  P  F  L  *  G  K  Y  K  P  I  L  G  L  I  F  R  F  F  R  E  S  F  L  V  A  K  K  R  E  K  E  Q  I  F  A  V  K  F  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  Y  P  I  E  L  I  F  G  Q  H  I  I  L  I  S  I  F  D  *  E  L  T  E  L  D  L  V  A  C  I  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  V  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  *  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  K  G  F  S  T  *  I  L  V  S  C  V  I  G  L  L  L  S  C  Y  I  C  L  V  E  L  L  A  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  K  R  E  S  I  D  L  G  I  L  P  L  L  S  C  Q  A  F  F  </first_frame>
            <second_frame>  V  G  L  W  V  F  F  P  F  L  Y  G  *  I  K  A  Q  F  G  P  T  H  F  C  P  *  S  H  S  Y  K  A  N  I  S  L  F  *  V  L  F  S  D  F  L  E  R  V  F  *  *  P  K  R  E  K  K  S  R  F  S  Q  S  N  F  S  H  N  S  Q  L  Q  I  A  I  P  A  S  F  L  I  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  A  S  S  V  L  L  S  *  I  V  A  A  K  L  V  I  L  F  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  D  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  V  *  L  V  Y  Y  C  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  F  S  L  G  S  N  R  K  G  K  V  *  T  W  V  F  F  R  C  Y  P  V  R  H  S  L </second_frame>
            <third_frame>   L  G  Y  G  S  F  F  P  S  Y  M  D  K  *  K  P  N  L  D  Q  L  I  F  V  H  N  P  I  L  I  R  Q  I  *  A  Y  F  R  S  Y  F  Q  I  F  *  R  E  F  F  S  S  Q  K  E  R  K  R  A  D  F  R  S  Q  I  S  A  I  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  P  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  H  L  Q  F  C  C  R  E  *  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  T  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  Q  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  V  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  F  L  L  V  Q  I  E  K  G  K  Y  R  L  G  Y  S  S  A  V  I  L  S  G  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13261" stop="13488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNSLDLVQSYFVVARCLTLVLWPILENNIVTLGDYSGAFGPVVFYSSHQRVFHVNLGVLCDWFIIVLLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15679" PGL_stop="17367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15679" e_stop="15764"/>
            <exon e_start="16898" e_stop="17367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.674" e_score="0.930"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="15679" e_stop="15764" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.674">
            <gDNA_intron_boundary i_start="15765" i_stop="16897" i_length="1133"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="16898" e_stop="17367" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15679" stop="15764"/>
              <exon start="16898" stop="17367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAGTCTTAGAGAGAGAAAGTGAGTGACAAGTGAGAGAAGGAGAAGAAAAAGCTTGTTAGGTGTTCTTCATTTCGGGTTCATC : AGCATCCGGGGCAAGGCGAGTGGGGTGTGGATATCTTCTCAGAACTCAAGTTTTTTGATTAACTGAACAATGGAGGTACTTGGAAAATCTATGGTAGCAGTGCCTACAAATGTTATATATCTGTCAACTATTCTGGGCCAAGATGGCCCAAACCCTGTTCACAAGTGTGATTGGAAATGTGAAAATGAACATGTGTGTGGGAACATGTTCCGCTGCCGTCTAACTGGGCTGACACACATTTGCGACAAAAACTGTAACCAGCGAATATTGTATGATAACCATAACTCTCTTTGCAGAGTTAGCCGACAGATTTTCCCTTTAACACAAGTTGAAGTGCAGGCTGTGAAAGGTGTACGGAGGAAGTTTGATGCTGATAGTTCCCCTTCTGATAGCTGCGCCTTTAAGCGCAGAAGGGATGCACATTTCCACCCATCACCATTTGAGAGATCTTTCACTGCTGTTAGTCCCAT</gDNA_template>
            <first_frame> E  K  V  L  E  R  E  S  E  *  Q  V  R  E  G  E  E  K  A  C  *  V  F  F  I  S  G  S  S :   A  S  G  A  R  R  V  G  C  G  Y  L  L  R  T  Q  V  F  *  L  T  E  Q  W  R  Y  L  E  N  L  W  *  Q  C  L  Q  M  L  Y  I  C  Q  L  F  W  A  K  M  A  Q  T  L  F  T  S  V  I  G  N  V  K  M  N  M  C  V  G  T  C  S  A  A  V  *  L  G  *  H  T  F  A  T  K  T  V  T  S  E  Y  C  M  I  T  I  T  L  F  A  E  L  A  D  R  F  S  L  *  H  K  L  K  C  R  L  *  K  V  Y  G  G  S  L  M  L  I  V  P  L  L  I  A  A  P  L  S  A  E  G  M  H  I  S  T  H  H  H  L  R  D  L  S  L  L  L  V  P  </first_frame>
            <second_frame>  K  K  S  *  R  E  K  V  S  D  K  *  E  K  E  K  K  K  L  V  R  C  S  S  F  R  V  H   : Q  H  P  G  Q  G  E  W  G  V  D  I  F  S  E  L  K  F  F  D  *  L  N  N  G  G  T  W  K  I  Y  G  S  S  A  Y  K  C  Y  I  S  V  N  Y  S  G  P  R  W  P  K  P  C  S  Q  V  *  L  E  M  *  K  *  T  C  V  W  E  H  V  P  L  P  S  N  W  A  D  T  H  L  R  Q  K  L  *  P  A  N  I  V  *  *  P  *  L  S  L  Q  S  *  P  T  D  F  P  F  N  T  S  *  S  A  G  C  E  R  C  T  E  E  V  *  C  *  *  F  P  F  *  *  L  R  L  *  A  Q  K  G  C  T  F  P  P  I  T  I  *  E  I  F  H  C  C  *  S  H </second_frame>
            <third_frame>   K  S  L  R  E  R  K  *  V  T  S  E  R  R  R  R  K  S  L  L  G  V  L  H  F  G  F  I  :  S  I  R  G  K  A  S  G  V  W  I  S  S  Q  N  S  S  F  L  I  N  *  T  M  E  V  L  G  K  S  M  V  A  V  P  T  N  V  I  Y  L  S  T  I  L  G  Q  D  G  P  N  P  V  H  K  C  D  W  K  C  E  N  E  H  V  C  G  N  M  F  R  C  R  L  T  G  L  T  H  I  C  D  K  N  C  N  Q  R  I  L  Y  D  N  H  N  S  L  C  R  V  S  R  Q  I  F  P  L  T  Q  V  E  V  Q  A  V  K  G  V  R  R  K  F  D  A  D  S  S  P  S  D  S  C  A  F  K  R  R  R  D  A  H  F  H  P  S  P  F  E  R  S  F  T  A  V  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16964" stop="17365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEVLGKSMVAVPTNVIYLSTILGQDGPNPVHKCDWKCENEHVCGNMFRCRLTGLTHICDKNCNQRILYDNHNSLCRVSRQIFPLTQVEVQAVKGVRRKFDADSSPSDSCAFKRRRDAHFHPSPFERSFTAVSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23775" PGL_stop="23307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23775" e_stop="23707"/>
            <exon e_start="23625" e_stop="23307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.790" e_score="0.928"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="23775" e_stop="23707" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.790">
            <gDNA_intron_boundary i_start="23706" i_stop="23626" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23625" e_stop="23307" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23775" stop="23707"/>
              <exon start="23625" stop="23307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGACCAGAATGAGAATGTTGATCATCAGACCAATGGGAATGTCAAAGCAAAAGCTAAGAAAGCCTCG : GCTATGGAACAAAAGAAGGGCAAGAAGGGAGCAAAGATACCAAAGAAAGTAAAAAAGAAACCTCAAGTGCAGAAGAAAAGCAAGAGCAAAAAATAAGATATGACTCTACATATTTCATTTCGTTTGATATGTATTCTATTTATTTTCTTTTCTTATTTTCTTTCTTTTTCTTCTGTTCTTTGTATACATATACTGATCATATTTTTTAAAAGCTAATGAAAGTAGTCTTTAGGAAGCTATATAATTGGTAGAGGCCACATAATATGTATTATTTGCAAGATTTTCTCATGATTATCCTCCATATTACCATAAAAATTCT</gDNA_template>
            <first_frame> G  D  Q  N  E  N  V  D  H  Q  T  N  G  N  V  K  A  K  A  K  K  A  S  :  A  M  E  Q  K  K  G  K  K  G  A  K  I  P  K  K  V  K  K  K  P  Q  V  Q  K  K  S  K  S  K  K  *  D  M  T  L  H  I  S  F  R  L  I  C  I  L  F  I  F  F  S  Y  F  L  S  F  S  S  V  L  C  I  H  I  L  I  I  F  F  K  S  *  *  K  *  S  L  G  S  Y  I  I  G  R  G  H  I  I  C  I  I  C  K  I  F  S  *  L  S  S  I  L  P  *  K  F  </first_frame>
            <second_frame>  V  T  R  M  R  M  L  I  I  R  P  M  G  M  S  K  Q  K  L  R  K  P  R :   L  W  N  K  R  R  A  R  R  E  Q  R  Y  Q  R  K  *  K  R  N  L  K  C  R  R  K  A  R  A  K  N  K  I  *  L  Y  I  F  H  F  V  *  Y  V  F  Y  L  F  S  F  L  I  F  F  L  F  L  L  F  F  V  Y  I  Y  *  S  Y  F  L  K  A  N  E  S  S  L  *  E  A  I  *  L  V  E  A  T  *  Y  V  L  F  A  R  F  S  H  D  Y  P  P  Y  Y  H  K  N  S </second_frame>
            <third_frame>   *  P  E  *  E  C  *  S  S  D  Q  W  E  C  Q  S  K  S  *  E  S  L   : G  Y  G  T  K  E  G  Q  E  G  S  K  D  T  K  E  S  K  K  E  T  S  S  A  E  E  K  Q  E  Q  K  I  R  Y  D  S  T  Y  F  I  S  F  D  M  Y  S  I  Y  F  L  F  L  F  S  F  F  F  F  C  S  L  Y  T  Y  T  D  H  I  F  *  K  L  M  K  V  V  F  R  K  L  Y  N  W  *  R  P  H  N  M  Y  Y  L  Q  D  F  L  M  I  I  L  H  I  T  I  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23716" stop="23707"/>
                    <exon start="23625" stop="23417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLGYGTKEGQEGSKDTKESKKETSSAEEKQEQKIRYDSTYFISFDMYSIYFLFLFSFFFFCSLYTYTDHIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30820" PGL_stop="26607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30820" e_stop="30297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30820" e_stop="30297" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30820" stop="30297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACCCCTGCTCACAAGCCTTTTCCCATGTTAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAGGTATAACTGTTTTGATTTCATCGGAATTTTCATAAATTTGCTCGCTATGCACTTTTCAAAGTCGATTTTATGCACTGAATCTATGTTTAATTAGTTGAGCAATCATTTGATTGAGTTTTAACCGATTTTGAACATCAGTTTGATTGGTCTTTCAGCTGCGAGATTCAAACTTTGATCAATTCAATTTTTTGTTCACAGTGCTTCGTGGCGGAGGTAGATTCAAGTACATGTATATAGTTTTAGAGCACATTTGGGTTAGGGTATGCTAATTTGGGGCAATTA</gDNA_template>
            <first_frame> T  P  L  L  T  S  L  F  P  C  *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R  Y  N  C  F  D  F  I  G  I  F  I  N  L  L  A  M  H  F  S  K  S  I  L  C  T  E  S  M  F  N  *  L  S  N  H  L  I  E  F  *  P  I  L  N  I  S  L  I  G  L  S  A  A  R  F  K  L  *  S  I  Q  F  F  V  H  S  A  S  W  R  R  *  I  Q  V  H  V  Y  S  F  R  A  H  L  G  *  G  M  L  I  W  G  N   </first_frame>
            <second_frame>  H  P  C  S  Q  A  F  S  H  V  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S  G  I  T  V  L  I  S  S  E  F  S  *  I  C  S  L  C  T  F  Q  S  R  F  Y  A  L  N  L  C  L  I  S  *  A  I  I  *  L  S  F  N  R  F  *  T  S  V  *  L  V  F  Q  L  R  D  S  N  F  D  Q  F  N  F  L  F  T  V  L  R  G  G  G  R  F  K  Y  M  Y  I  V  L  E  H  I  W  V  R  V  C  *  F  G  A  I  </second_frame>
            <third_frame>   T  P  A  H  K  P  F  P  M  L  K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  V  *  L  F  *  F  H  R  N  F  H  K  F  A  R  Y  A  L  F  K  V  D  F  M  H  *  I  Y  V  *  L  V  E  Q  S  F  D  *  V  L  T  D  F  E  H  Q  F  D  W  S  F  S  C  E  I  Q  T  L  I  N  S  I  F  C  S  Q  C  F  V  A  E  V  D  S  S  T  C  I  *  F  *  S  T  F  G  L  G  Y  A  N  L  G  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30703" stop="30485"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTLFFSLSQARVLVSTEIILSKLRKWLILEKNLQIGSAVFRYNCFDFIGIFINLLAMHFSKSILCTESMFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30790" e_stop="30579"/>
            <exon e_start="29547" e_stop="29289"/>
            <exon e_start="29187" e_stop="29126"/>
            <exon e_start="26693" e_stop="26607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30790" e_stop="30579" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.884">
            <gDNA_intron_boundary i_start="30578" i_stop="29548" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29547" e_stop="29289" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.736">
            <gDNA_intron_boundary i_start="29288" i_stop="29188" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29187" e_stop="29126" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29125" i_stop="26694" i_length="2432"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26693" e_stop="26607" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30790" stop="30579"/>
              <exon start="29547" stop="29289"/>
              <exon start="29187" stop="29126"/>
              <exon start="26693" stop="26607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATCTGAAATCAAATGGAGGGAAAATAATTTCCAGTATCTGGCCTTTAACGATATACATATATTACATCATATTTTCACTTTAACTACTCACACTTTTTTTTTCTCTCTCACAGGCAAGGGTTTTAGTATCCACTGAAATTATTCTCTCAAAACTTAGAAAATGGCTGATTCTAGAGAAGAATCTCCAGATTGGCTCCGCAGTTTTCAG : GCACCTGCTGCGATAATCTTGTCATCCGGATCTGAATCTCCTGTAAATAACAACCACCTAAGTGATGATGAGGATAGCATCAATCTGAGTAAGCTGTTTCAGAAGGATAAAACATCACTTTCAGAGGAAAAATGTAGTCAGGATGGACATGGATCTCAACTCAAGAAGACGTCCGAAGTAAATTCTCCGATTAAAAATGAAGAAGTAGATCGCACACCTACTAGGAAGAGAAAGAATGAAAACCAGAGTGAAAAAAAAG : GAAAAGGCACTGACAAGGCTTTAACGAAGAGAAGAGCATTGGAGAAGCCTTTTACAGATAAA : GAACCCAGTCATTCAGTCTGTACGTTGTCATCGGATTCTGAGTCTCCTCATGATGGCAGTTCCATGAAAGTGGAGGAAGTCCTTGAC</gDNA_template>
            <first_frame> *  N  L  K  S  N  G  G  K  I  I  S  S  I  W  P  L  T  I  Y  I  Y  Y  I  I  F  S  L  *  L  L  T  L  F  F  S  L  S  Q  A  R  V  L  V  S  T  E  I  I  L  S  K  L  R  K  W  L  I  L  E  K  N  L  Q  I  G  S  A  V  F  R :   H  L  L  R  *  S  C  H  P  D  L  N  L  L  *  I  T  T  T  *  V  M  M  R  I  A  S  I  *  V  S  C  F  R  R  I  K  H  H  F  Q  R  K  N  V  V  R  M  D  M  D  L  N  S  R  R  R  P  K  *  I  L  R  L  K  M  K  K  *  I  A  H  L  L  G  R  E  R  M  K  T  R  V  K  K  K  :  E  K  A  L  T  R  L  *  R  R  E  E  H  W  R  S  L  L  Q  I  K :   N  P  V  I  Q  S  V  R  C  H  R  I  L  S  L  L  M  M  A  V  P  *  K  W  R  K  S  L   </first_frame>
            <second_frame>  K  I  *  N  Q  M  E  G  K  *  F  P  V  S  G  L  *  R  Y  T  Y  I  T  S  Y  F  H  F  N  Y  S  H  F  F  F  L  S  H  R  Q  G  F  *  Y  P  L  K  L  F  S  Q  N  L  E  N  G  *  F  *  R  R  I  S  R  L  A  P  Q  F  S   : G  T  C  C  D  N  L  V  I  R  I  *  I  S  C  K  *  Q  P  P  K  *  *  *  G  *  H  Q  S  E  *  A  V  S  E  G  *  N  I  T  F  R  G  K  M  *  S  G  W  T  W  I  S  T  Q  E  D  V  R  S  K  F  S  D  *  K  *  R  S  R  S  H  T  Y  *  E  E  K  E  *  K  P  E  *  K  K  R :   K  R  H  *  Q  G  F  N  E  E  K  S  I  G  E  A  F  Y  R  *   : R  T  Q  S  F  S  L  Y  V  V  I  G  F  *  V  S  S  *  W  Q  F  H  E  S  G  G  S  P  *  </second_frame>
            <third_frame>   K  S  E  I  K  W  R  E  N  N  F  Q  Y  L  A  F  N  D  I  H  I  L  H  H  I  F  T  L  T  T  H  T  F  F  F  S  L  T  G  K  G  F  S  I  H  *  N  Y  S  L  K  T  *  K  M  A  D  S  R  E  E  S  P  D  W  L  R  S  F  Q  :  A  P  A  A  I  I  L  S  S  G  S  E  S  P  V  N  N  N  H  L  S  D  D  E  D  S  I  N  L  S  K  L  F  Q  K  D  K  T  S  L  S  E  E  K  C  S  Q  D  G  H  G  S  Q  L  K  K  T  S  E  V  N  S  P  I  K  N  E  E  V  D  R  T  P  T  R  K  R  K  N  E  N  Q  S  E  K  K   : G  K  G  T  D  K  A  L  T  K  R  R  A  L  E  K  P  F  T  D  K  :  E  P  S  H  S  V  C  T  L  S  S  D  S  E  S  P  H  D  G  S  S  M  K  V  E  E  V  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30629" stop="30579"/>
                    <exon start="29547" stop="29289"/>
                    <exon start="29187" stop="29126"/>
                    <exon start="26693" stop="26607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADSREESPDWLRSFQAPAAIILSSGSESPVNNNHLSDDEDSINLSKLFQKDKTSLSEEKCSQDGHGSQLKKTSEVNSPIKNEEVDRTPTRKRKNENQSEKKGKGTDKALTKRRALEKPFTDKEPSHSVCTLSSDSESPHDGSSMKVEEVLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39503" PGL_stop="41072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39564" e_stop="40790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39564" e_stop="40790" e_length="1227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39564" stop="40371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40138" stop="40790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAGGTTTGATTTTCCCCAATTCTCTTTTTCATGTCGCAGATGAATTTTAATACTATTAATTAAAATCGCCTAATTATGGATTCTACCACTGATTTGTTTCTGTTTTTAGGTGGATTTTATGGAAAATTCATGCTGTTTTTAGTTTTAATCAAAAAAATATATATGTTACTGGATTAGCAGATTTTGTACTGTTTTTTCATTGTGATTGCAGGTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCACGTGAGTCTTGATGTTTAATTTAACAAATTTCTTATCTGTTTTTCATTAATTACTAATATAGAATATATATATAATCATCAGGGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTT</gDNA_template>
            <first_frame> V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R  G  L  I  F  P  N  S  L  F  H  V  A  D  E  F  *  Y  Y  *  L  K  S  P  N  Y  G  F  Y  H  *  F  V  S  V  F  R  W  I  L  W  K  I  H  A  V  F  S  F  N  Q  K  N  I  Y  V  T  G  L  A  D  F  V  L  F  F  H  C  D  C  R  L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S  R  E  S  *  C  L  I  *  Q  I  S  Y  L  F  F  I  N  Y  *  Y  R  I  Y  I  *  S  S  G  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F </first_frame>
            <second_frame>  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  V  *  F  S  P  I  L  F  F  M  S  Q  M  N  F  N  T  I  N  *  N  R  L  I  M  D  S  T  T  D  L  F  L  F  L  G  G  F  Y  G  K  F  M  L  F  L  V  L  I  K  K  I  Y  M  L  L  D  *  Q  I  L  Y  C  F  F  I  V  I  A  G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  V  S  L  D  V  *  F  N  K  F  L  I  C  F  S  L  I  T  N  I  E  Y  I  Y  N  H  Q  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y   </second_frame>
            <third_frame>   K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R  F  D  F  P  Q  F  S  F  S  C  R  R  *  I  L  I  L  L  I  K  I  A  *  L  W  I  L  P  L  I  C  F  C  F  *  V  D  F  M  E  N  S  C  C  F  *  F  *  S  K  K  Y  I  C  Y  W  I  S  R  F  C  T  V  F  S  L  *  L  Q  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T  *  V  L  M  F  N  L  T  N  F  L  S  V  F  H  *  L  L  I  *  N  I  Y  I  I  I  R  D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40100" stop="40453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39568" stop="39903"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39595" e_stop="39897"/>
            <exon e_start="40106" e_stop="40138"/>
            <exon e_start="40373" e_stop="40449"/>
            <exon e_start="40531" e_stop="41072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.987"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="39595" e_stop="39897" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39898" i_stop="40105" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40106" e_stop="40138" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40139" i_stop="40372" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="40373" e_stop="40449" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40450" i_stop="40530" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="40531" e_stop="41072" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39897"/>
              <exon start="40106" stop="40138"/>
              <exon start="40373" stop="40449"/>
              <exon start="40531" stop="41072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573384" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAG : ATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTGGTGAATTTTATTTATACATAAGAGTTAGCCCTCGCTTTTATCAGCTAGTTCTGTTTGCACTTGCAGCAGCAGGTTGTTGCTTGTTGATGAGATTGCATTTCCATTGTTATTGTCAAGTCAAATCACTTTGCGCATGATATTGCTTTCGCTTAACAATGATTTCTCAAACATGTATTGGCTTGCATATTCATTTGTGTCTAAGTGGATCCTCGATTGTGGTGTATTACTCTTCTTGTGCTATG</gDNA_template>
            <first_frame> L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  :  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C  W  *  I  L  F  I  H  K  S  *  P  S  L  L  S  A  S  S  V  C  T  C  S  S  R  L  L  L  V  D  E  I  A  F  P  L  L  L  S  S  Q  I  T  L  R  M  I  L  L  S  L  N  N  D  F  S  N  M  Y  W  L  A  Y  S  F  V  S  K  W  I  L  D  C  G  V  L  L  F  L  C  Y  </first_frame>
            <second_frame>  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R :   L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  G  E  F  Y  L  Y  I  R  V  S  P  R  F  Y  Q  L  V  L  F  A  L  A  A  A  G  C  C  L  L  M  R  L  H  F  H  C  Y  C  Q  V  K  S  L  C  A  *  Y  C  F  R  L  T  M  I  S  Q  T  C  I  G  L  H  I  H  L  C  L  S  G  S  S  I  V  V  Y  Y  S  S  C  A  M </second_frame>
            <third_frame>   K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q   : D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L  V  N  F  I  Y  T  *  E  L  A  L  A  F  I  S  *  F  C  L  H  L  Q  Q  Q  V  V  A  C  *  *  D  C  I  S  I  V  I  V  K  S  N  H  F  A  H  D  I  A  F  A  *  Q  *  F  L  K  H  V  L  A  C  I  F  I  C  V  *  V  D  P  R  L  W  C  I  T  L  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39595" stop="39897"/>
                    <exon start="40106" stop="40138"/>
                    <exon start="40373" stop="40449"/>
                    <exon start="40531" stop="40690"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40859" stop="41071"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSLLSASSVCTCSSRLLLVDEIAFPLLLSSQITLRMILLSLNNDFSNMYWLAYSFVSKWILDCGVLLFLCY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39503" e_stop="39897"/>
            <exon e_start="40106" e_stop="40449"/>
            <exon e_start="40531" e_stop="40830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39503" e_stop="39897" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39898" i_stop="40105" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40106" e_stop="40449" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40450" i_stop="40530" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="40531" e_stop="40830" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39503" stop="39897"/>
              <exon start="40106" stop="40449"/>
              <exon start="40531" stop="40830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAGTTGAAGTTGAAATTCCGAAAAAAAAGTGAAGTCTCCTATTAATAGAACATGTAGCGTAAACCCTAAACCCAAGCCTCCTCTTCTCCTTAAACCCTAAATTCTCTACCTCTGCGAAAATGGCTGTCACTAACATCATCAGAAGGACTGCTTCTCAAGTTGTACCCTTGGCTGCTCGGGTGATCTTTAGAACACAGAGTTACCATCATCGATCCTCTGCTCTCTTATCCACCATAGTTAACCGTAGTGCTGCTTCTAGAAACTTCTTTCGGAGCTCAGCACCGTCCACCCTTCATTTCTATTCTACCAAGAGGCCCAGTTCTGATGAATCACTCCTCAAAGTCATTCAGTCCGAAATCCAATGTGCCGAGGAATCCGACGAACAAGACGAG : GTTGAGGAGGCTCCTGAGGGTTTCCCCTTCAAGATTGAAGATCATCCTGGACAACAAACTATTACATTGACAAGAGAATATCAAGGTGAATCTATAAATGTGGAAGTTCACATGCCTGACCTTGTTACCGGTGATGAAGATGAGAATGACAACGGTGGTGAGGATGATGACGAAGGGTCCAATCAGTCCAATATTCCTCTAGTTGTTAGGGTGTCTAAGAGAAATGGACCTGCTTTGGAGTTTGGTATCACAGCTTTTGCTGATGAGATTGCTATTGACACTTTGTCAATCAAAGATCCTAATGTTGCTGAGGATCAGATTGCTTATGAAGGACCTGATTTCAC : GGATTTGGATGAGAACCTCCAAAAGGCTTTCCACAAGTATCTGGAGATTAGGGGTATCAAGCCCAGCACAACCAACTTCTTGCATGAGTACATGGTCAACAAGGATAGCAGAGAATACAAGATGTGGCTTAAGAATCTGAAGAAATTCATCGAGGCATAGGTTCCATAAGTTTTGATTGATGTTTTAGTAGGGGCTAGCTACTTCGTAATGTCTGTCAATGATGTCAAAATACCGTGATTTTTAGTGTTTTTTTTTATTTTTGCTATAGATGTACCATGGCCACTTAAAATAGAATGTTG</gDNA_template>
            <first_frame> P  K  L  K  L  K  F  R  K  K  S  E  V  S  Y  *  *  N  M  *  R  K  P  *  T  Q  A  S  S  S  P  *  T  L  N  S  L  P  L  R  K  W  L  S  L  T  S  S  E  G  L  L  L  K  L  Y  P  W  L  L  G  *  S  L  E  H  R  V  T  I  I  D  P  L  L  S  Y  P  P  *  L  T  V  V  L  L  L  E  T  S  F  G  A  Q  H  R  P  P  F  I  S  I  L  P  R  G  P  V  L  M  N  H  S  S  K  S  F  S  P  K  S  N  V  P  R  N  P  T  N  K  T  R :   L  R  R  L  L  R  V  S  P  S  R  L  K  I  I  L  D  N  K  L  L  H  *  Q  E  N  I  K  V  N  L  *  M  W  K  F  T  C  L  T  L  L  P  V  M  K  M  R  M  T  T  V  V  R  M  M  T  K  G  P  I  S  P  I  F  L  *  L  L  G  C  L  R  E  M  D  L  L  W  S  L  V  S  Q  L  L  L  M  R  L  L  L  T  L  C  Q  S  K  I  L  M  L  L  R  I  R  L  L  M  K  D  L  I  S   : R  I  W  M  R  T  S  K  R  L  S  T  S  I  W  R  L  G  V  S  S  P  A  Q  P  T  S  C  M  S  T  W  S  T  R  I  A  E  N  T  R  C  G  L  R  I  *  R  N  S  S  R  H  R  F  H  K  F  *  L  M  F  *  *  G  L  A  T  S  *  C  L  S  M  M  S  K  Y  R  D  F  *  C  F  F  L  F  L  L  *  M  Y  H  G  H  L  K  *  N  V  </first_frame>
            <second_frame>  P  S  *  S  *  N  S  E  K  K  V  K  S  P  I  N  R  T  C  S  V  N  P  K  P  K  P  P  L  L  L  K  P  *  I  L  Y  L  C  E  N  G  C  H  *  H  H  Q  K  D  C  F  S  S  C  T  L  G  C  S  G  D  L  *  N  T  E  L  P  S  S  I  L  C  S  L  I  H  H  S  *  P  *  C  C  F  *  K  L  L  S  E  L  S  T  V  H  P  S  F  L  F  Y  Q  E  A  Q  F  *  *  I  T  P  Q  S  H  S  V  R  N  P  M  C  R  G  I  R  R  T  R  R   : G  *  G  G  S  *  G  F  P  L  Q  D  *  R  S  S  W  T  T  N  Y  Y  I  D  K  R  I  S  R  *  I  Y  K  C  G  S  S  H  A  *  P  C  Y  R  *  *  R  *  E  *  Q  R  W  *  G  *  *  R  R  V  Q  S  V  Q  Y  S  S  S  C  *  G  V  *  E  K  W  T  C  F  G  V  W  Y  H  S  F  C  *  *  D  C  Y  *  H  F  V  N  Q  R  S  *  C  C  *  G  S  D  C  L  *  R  T  *  F  H  :  G  F  G  *  E  P  P  K  G  F  P  Q  V  S  G  D  *  G  Y  Q  A  Q  H  N  Q  L  L  A  *  V  H  G  Q  Q  G  *  Q  R  I  Q  D  V  A  *  E  S  E  E  I  H  R  G  I  G  S  I  S  F  D  *  C  F  S  R  G  *  L  L  R  N  V  C  Q  *  C  Q  N  T  V  I  F  S  V  F  F  Y  F  C  Y  R  C  T  M  A  T  *  N  R  M  L </second_frame>
            <third_frame>   Q  V  E  V  E  I  P  K  K  K  *  S  L  L  L  I  E  H  V  A  *  T  L  N  P  S  L  L  F  S  L  N  P  K  F  S  T  S  A  K  M  A  V  T  N  I  I  R  R  T  A  S  Q  V  V  P  L  A  A  R  V  I  F  R  T  Q  S  Y  H  H  R  S  S  A  L  L  S  T  I  V  N  R  S  A  A  S  R  N  F  F  R  S  S  A  P  S  T  L  H  F  Y  S  T  K  R  P  S  S  D  E  S  L  L  K  V  I  Q  S  E  I  Q  C  A  E  E  S  D  E  Q  D  E  :  V  E  E  A  P  E  G  F  P  F  K  I  E  D  H  P  G  Q  Q  T  I  T  L  T  R  E  Y  Q  G  E  S  I  N  V  E  V  H  M  P  D  L  V  T  G  D  E  D  E  N  D  N  G  G  E  D  D  D  E  G  S  N  Q  S  N  I  P  L  V  V  R  V  S  K  R  N  G  P  A  L  E  F  G  I  T  A  F  A  D  E  I  A  I  D  T  L  S  I  K  D  P  N  V  A  E  D  Q  I  A  Y  E  G  P  D  F  T :   D  L  D  E  N  L  Q  K  A  F  H  K  Y  L  E  I  R  G  I  K  P  S  T  T  N  F  L  H  E  Y  M  V  N  K  D  S  R  E  Y  K  M  W  L  K  N  L  K  K  F  I  E  A  *  V  P  *  V  L  I  D  V  L  V  G  A  S  Y  F  V  M  S  V  N  D  V  K  I  P  *  F  L  V  F  F  F  I  F  A  I  D  V  P  W  P  L  K  I  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39568" stop="39897"/>
                    <exon start="40106" stop="40449"/>
                    <exon start="40531" stop="40690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLNPSLLFSLNPKFSTSAKMAVTNIIRRTASQVVPLAARVIFRTQSYHHRSSALLSTIVNRSAASRNFFRSSAPSTLHFYSTKRPSSDESLLKVIQSEIQCAEESDEQDEVEEAPEGFPFKIEDHPGQQTITLTREYQGESINVEVHMPDLVTGDEDENDNGGEDDDEGSNQSNIPLVVRVSKRNGPALEFGITAFADEIAIDTLSIKDPNVAEDQIAYEGPDFTDLDENLQKAFHKYLEIRGIKPSTTNFLHEYMVNKDSREYKMWLKNLKKFIEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48959" PGL_stop="41532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48959" e_stop="48695"/>
            <exon e_start="48625" e_stop="48513"/>
            <exon e_start="46664" e_stop="46404"/>
            <exon e_start="46276" e_stop="46172"/>
            <exon e_start="45312" e_stop="45247"/>
            <exon e_start="45119" e_stop="44898"/>
            <exon e_start="43935" e_stop="43381"/>
            <exon e_start="43031" e_stop="42435"/>
            <exon e_start="42231" e_stop="42055"/>
            <exon e_start="41979" e_stop="41532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.406" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="48959" e_stop="48695" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48694" i_stop="48626" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48625" e_stop="48513" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="48512" i_stop="46665" i_length="1848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46664" e_stop="46404" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.406">
            <gDNA_intron_boundary i_start="46403" i_stop="46277" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46276" e_stop="46172" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.921">
            <gDNA_intron_boundary i_start="46171" i_stop="45313" i_length="859"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45312" e_stop="45247" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45246" i_stop="45120" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45119" e_stop="44898" e_length="222"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44897" i_stop="43936" i_length="962"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43935" e_stop="43381" e_length="555"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.655">
            <gDNA_intron_boundary i_start="43380" i_stop="43032" i_length="349"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43031" e_stop="42435" e_length="597"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42434" i_stop="42232" i_length="203"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42231" e_stop="42055" e_length="177"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="42054" i_stop="41980" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="41979" e_stop="41532" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48959" stop="48695"/>
              <exon start="48625" stop="48513"/>
              <exon start="46664" stop="46404"/>
              <exon start="46276" stop="46172"/>
              <exon start="45312" stop="45247"/>
              <exon start="45119" stop="44898"/>
              <exon start="43935" stop="43381"/>
              <exon start="43031" stop="42435"/>
              <exon start="42231" stop="42055"/>
              <exon start="41979" stop="41532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCAAACACCTAAATTACACCCCACTTCACTCTTCTCTCTCTTTCCCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTA : ATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAATGCGCAG : GTTTTGAGAGTGCTTGATTATTCTAAGATTAGCAGGCATTTATTGGTGACAGCTGGTGATGATGGATCTATCCACCTGTGGGATACAACTGGTCGCAGCCCCAAG : GTTTCTTGGCTAAAGCAGCATTCTGCACCAACTTCTGGCATTAGTTTCTCACCAACAAACGACAAG : ATTGTTGCTAGTGTTGGTATGGATAAGAAGTTGTACACTTTTGACTCAGGGTCAAGAAGGCCGACATTTTGCATTCCTTACGAGGCACCTTTTTCTTCACTGGCATTTACTGATGACGGATTCACTCTGGCAGCTGGAACAAGTAGTGGCCGGGTAGTATTCTATGACGTTCGTGGAAAACCACAACCCTTGACTGTTTTACGTGCTTATGGAAATTCTGAG : GCTGTGACAAGTCTATGCTGGCAAAGAGCAAAACCTGTAATTGTCAATGAAAACAATTGCACTACAGAAATGGCTCTCCTGGGCAGTGCTGTGGAGGATTCAATTTTGATGCCTGACCCACTTCCTGCTATGATGTCATCAAGCCTAGCAACTTCTATGACAACATCAGGTTCGAGAACCACTGTTCGTTCAGGTTCTGTGGACTCATTTTCTTTTCCAGCAGGCATTACAGGATCTACATCTGGGACAACAGGTTTATCTCCATCCGAGGAAACACCCATACGAAGTAGTTTATGGAAAGGTGGATCTTTGGCAAGATTACATGCTCCTCGTAACTTCAAGGATGATATGGAAGTTTTTTCTCCTCTTGTTGAAGTTCAGCCAATTACACCTTCACTTGATAAGTTGTGGGATGATCAGGAAGGTTTCAAAAAGGATTTTGATAAGAAGTCATCTTTGCTATTTCCTTCTTCTCTAAGGTTTCCCCTTCCAGTTGAGGGTGGCAATGAGAATCGCCCCATATTTGATTGGAAATCAAGTTCCTTACCCAAACAG : GAGGATGCTTCTTTTGCACAGTTGTCTTCCACTCCAACATCTTCTCGTGGTGATGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGAGAGATTATCGGATAGATTATCTCATCTTCGGCAGTCAGGAAATATGCCTTCCCGTTTTGCAATCTCGACATCTGGTCCTCTTGCACCAGGATCTATGTTATCTGGATTACAGGATAATTTTCCTGCAACTCAGAGTATCGGCTCTTTGACTAGTTCTACTCTAAGTTTGGCTAATTTGCGCATAAAAGAAAATCCAAATGAAGAAACTATTCTAGGATCTTCAGAACATGCGAGTTCCACATCCTTTTCAGTTGGAACAAAAGGCATTACTGGGCAGGGTACTCTTGATACTCTTGGTTCAACTGTATCCCTCCCACGAAGATTTTCCAGTTATGCTGAGAGAATAAGCACTACACCATCCTTCAGTGATGGAACCCTTTCTGTTGGTTCTCCAAAAACTAAGAAAACTGGAGCTGAAACAAGGGAAGAGCTTCTGAATAGCTTGTTATCTAGGTCGGACACGTCGTCTGCTACAGCAGCTGGTGCTTTCCAAGCAATAAAT : GGTGAAATTAAGCAATCTCAAAAGTCCACACTGCCTGAATTGCAGCAGGGAAGTTCCTTTACACTCCAGCTGTTCCAACGTACACAAGAAGAAACTCTTTCTTCCCTTCAAAAATCCATTCACGAGGATATGAGGAATCTTCACTTAGATATCTTAAGACAATTTCATATGCAAGAG : ATGGAAACTTCTAGTGCTATGAAATTGATACTGGAAAACCAAGCAGAGCTGATGAAAGAGGTTCAATTACTTCGAAGGGAAACACAGCAGCTTCGACAGTTATTATGACCAGACTAGCTAAAAGTCTTGTCATTACGTATTCTTTTAGTTTTAGCCATGTACGCAATGCTGTTTTAGGAGATTTGTACTGACAGTTGTGTAGTGAGTAGCGAGTGCGGAAGTGTTATTGTGTGTTTATCTAATTGTGGGCGAATTTGGGGGTTTATTTTACCCTAATATAGTAAAGGAGTGTGTGATGGCTGATCAATAACAGTTAAGAGTGCTGTTATGGTTGTGTACAGAAAGTTGGCTAGGCCAATTTCAGAAATTTAATGTACAGAACTACAGATCATCTAATTCACTTTGATTTAAAAAACATCCTTCCAAGTTGGAGGAGGTTTATTCATAT</gDNA_template>
            <first_frame> K  S  N  T  *  I  T  P  H  F  T  L  L  S  L  S  L  L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T   : N  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  L  K  D  P  N  A  Q  :  V  L  R  V  L  D  Y  S  K  I  S  R  H  L  L  V  T  A  G  D  D  G  S  I  H  L  W  D  T  T  G  R  S  P  K  :  V  S  W  L  K  Q  H  S  A  P  T  S  G  I  S  F  S  P  T  N  D  K  :  I  V  A  S  V  G  M  D  K  K  L  Y  T  F  D  S  G  S  R  R  P  T  F  C  I  P  Y  E  A  P  F  S  S  L  A  F  T  D  D  G  F  T  L  A  A  G  T  S  S  G  R  V  V  F  Y  D  V  R  G  K  P  Q  P  L  T  V  L  R  A  Y  G  N  S  E  :  A  V  T  S  L  C  W  Q  R  A  K  P  V  I  V  N  E  N  N  C  T  T  E  M  A  L  L  G  S  A  V  E  D  S  I  L  M  P  D  P  L  P  A  M  M  S  S  S  L  A  T  S  M  T  T  S  G  S  R  T  T  V  R  S  G  S  V  D  S  F  S  F  P  A  G  I  T  G  S  T  S  G  T  T  G  L  S  P  S  E  E  T  P  I  R  S  S  L  W  K  G  G  S  L  A  R  L  H  A  P  R  N  F  K  D  D  M  E  V  F  S  P  L  V  E  V  Q  P  I  T  P  S  L  D  K  L  W  D  D  Q  E  G  F  K  K  D  F  D  K  K  S  S  L  L  F  P  S  S  L  R  F  P  L  P  V  E  G  G  N  E  N  R  P  I  F  D  W  K  S  S  S  L  P  K  Q  :  E  D  A  S  F  A  Q  L  S  S  T  P  T  S  S  R  G  D  D  S  S  S  I  T  P  P  E  A  W  G  G  E  R  L  S  D  R  L  S  H  L  R  Q  S  G  N  M  P  S  R  F  A  I  S  T  S  G  P  L  A  P  G  S  M  L  S  G  L  Q  D  N  F  P  A  T  Q  S  I  G  S  L  T  S  S  T  L  S  L  A  N  L  R  I  K  E  N  P  N  E  E  T  I  L  G  S  S  E  H  A  S  S  T  S  F  S  V  G  T  K  G  I  T  G  Q  G  T  L  D  T  L  G  S  T  V  S  L  P  R  R  F  S  S  Y  A  E  R  I  S  T  T  P  S  F  S  D  G  T  L  S  V  G  S  P  K  T  K  K  T  G  A  E  T  R  E  E  L  L  N  S  L  L  S  R  S  D  T  S  S  A  T  A  A  G  A  F  Q  A  I  N  :  G  E  I  K  Q  S  Q  K  S  T  L  P  E  L  Q  Q  G  S  S  F  T  L  Q  L  F  Q  R  T  Q  E  E  T  L  S  S  L  Q  K  S  I  H  E  D  M  R  N  L  H  L  D  I  L  R  Q  F  H  M  Q  E  :  M  E  T  S  S  A  M  K  L  I  L  E  N  Q  A  E  L  M  K  E  V  Q  L  L  R  R  E  T  Q  Q  L  R  Q  L  L  *  P  D  *  L  K  V  L  S  L  R  I  L  L  V  L  A  M  Y  A  M  L  F  *  E  I  C  T  D  S  C  V  V  S  S  E  C  G  S  V  I  V  C  L  S  N  C  G  R  I  W  G  F  I  L  P  *  Y  S  K  G  V  C  D  G  *  S  I  T  V  K  S  A  V  M  V  V  Y  R  K  L  A  R  P  I  S  E  I  *  C  T  E  L  Q  I  I  *  F  T  L  I  *  K  T  S  F  Q  V  G  G  G  L  F  I  </first_frame>
            <second_frame>  N  Q  T  P  K  L  H  P  T  S  L  F  S  L  F  P  F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  :  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N  S  R  I  Q  M  R  R :   F  *  E  C  L  I  I  L  R  L  A  G  I  Y  W  *  Q  L  V  M  M  D  L  S  T  C  G  I  Q  L  V  A  A  P  R :   F  L  G  *  S  S  I  L  H  Q  L  L  A  L  V  S  H  Q  Q  T  T  R :   L  L  L  V  L  V  W  I  R  S  C  T  L  L  T  Q  G  Q  E  G  R  H  F  A  F  L  T  R  H  L  F  L  H  W  H  L  L  M  T  D  S  L  W  Q  L  E  Q  V  V  A  G  *  Y  S  M  T  F  V  E  N  H  N  P  *  L  F  Y  V  L  M  E  I  L  R :   L  *  Q  V  Y  A  G  K  E  Q  N  L  *  L  S  M  K  T  I  A  L  Q  K  W  L  S  W  A  V  L  W  R  I  Q  F  *  C  L  T  H  F  L  L  *  C  H  Q  A  *  Q  L  L  *  Q  H  Q  V  R  E  P  L  F  V  Q  V  L  W  T  H  F  L  F  Q  Q  A  L  Q  D  L  H  L  G  Q  Q  V  Y  L  H  P  R  K  H  P  Y  E  V  V  Y  G  K  V  D  L  W  Q  D  Y  M  L  L  V  T  S  R  M  I  W  K  F  F  L  L  L  L  K  F  S  Q  L  H  L  H  L  I  S  C  G  M  I  R  K  V  S  K  R  I  L  I  R  S  H  L  C  Y  F  L  L  L  *  G  F  P  F  Q  L  R  V  A  M  R  I  A  P  Y  L  I  G  N  Q  V  P  Y  P  N  R :   R  M  L  L  L  H  S  C  L  P  L  Q  H  L  L  V  V  M  I  L  P  P  *  L  L  Q  K  L  G  V  V  R  D  Y  R  I  D  Y  L  I  F  G  S  Q  E  I  C  L  P  V  L  Q  S  R  H  L  V  L  L  H  Q  D  L  C  Y  L  D  Y  R  I  I  F  L  Q  L  R  V  S  A  L  *  L  V  L  L  *  V  W  L  I  C  A  *  K  K  I  Q  M  K  K  L  F  *  D  L  Q  N  M  R  V  P  H  P  F  Q  L  E  Q  K  A  L  L  G  R  V  L  L  I  L  L  V  Q  L  Y  P  S  H  E  D  F  P  V  M  L  R  E  *  A  L  H  H  P  S  V  M  E  P  F  L  L  V  L  Q  K  L  R  K  L  E  L  K  Q  G  K  S  F  *  I  A  C  Y  L  G  R  T  R  R  L  L  Q  Q  L  V  L  S  K  Q  *  M :   V  K  L  S  N  L  K  S  P  H  C  L  N  C  S  R  E  V  P  L  H  S  S  C  S  N  V  H  K  K  K  L  F  L  P  F  K  N  P  F  T  R  I  *  G  I  F  T  *  I  S  *  D  N  F  I  C  K  R :   W  K  L  L  V  L  *  N  *  Y  W  K  T  K  Q  S  *  *  K  R  F  N  Y  F  E  G  K  H  S  S  F  D  S  Y  Y  D  Q  T  S  *  K  S  C  H  Y  V  F  F  *  F  *  P  C  T  Q  C  C  F  R  R  F  V  L  T  V  V  *  *  V  A  S  A  E  V  L  L  C  V  Y  L  I  V  G  E  F  G  G  L  F  Y  P  N  I  V  K  E  C  V  M  A  D  Q  *  Q  L  R  V  L  L  W  L  C  T  E  S  W  L  G  Q  F  Q  K  F  N  V  Q  N  Y  R  S  S  N  S  L  *  F  K  K  H  P  S  K  L  E  E  V  Y  S  Y </second_frame>
            <third_frame>   I  K  H  L  N  Y  T  P  L  H  S  S  L  S  F  P  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  * :   F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *  T  Q  G  S  K  C  A   : G  F  E  S  A  *  L  F  *  D  *  Q  A  F  I  G  D  S  W  *  *  W  I  Y  P  P  V  G  Y  N  W  S  Q  P  Q   : G  F  L  A  K  A  A  F  C  T  N  F  W  H  *  F  L  T  N  K  R  Q   : D  C  C  *  C  W  Y  G  *  E  V  V  H  F  *  L  R  V  K  K  A  D  I  L  H  S  L  R  G  T  F  F  F  T  G  I  Y  *  *  R  I  H  S  G  S  W  N  K  *  W  P  G  S  I  L  *  R  S  W  K  T  T  T  L  D  C  F  T  C  L  W  K  F  *   : G  C  D  K  S  M  L  A  K  S  K  T  C  N  C  Q  *  K  Q  L  H  Y  R  N  G  S  P  G  Q  C  C  G  G  F  N  F  D  A  *  P  T  S  C  Y  D  V  I  K  P  S  N  F  Y  D  N  I  R  F  E  N  H  C  S  F  R  F  C  G  L  I  F  F  S  S  R  H  Y  R  I  Y  I  W  D  N  R  F  I  S  I  R  G  N  T  H  T  K  *  F  M  E  R  W  I  F  G  K  I  T  C  S  S  *  L  Q  G  *  Y  G  S  F  F  S  S  C  *  S  S  A  N  Y  T  F  T  *  *  V  V  G  *  S  G  R  F  Q  K  G  F  *  *  E  V  I  F  A  I  S  F  F  S  K  V  S  P  S  S  *  G  W  Q  *  E  S  P  H  I  *  L  E  I  K  F  L  T  Q  T   : G  G  C  F  F  C  T  V  V  F  H  S  N  I  F  S  W  *  *  F  F  L  H  N  S  S  R  S  L  G  W  *  E  I  I  G  *  I  I  S  S  S  A  V  R  K  Y  A  F  P  F  C  N  L  D  I  W  S  S  C  T  R  I  Y  V  I  W  I  T  G  *  F  S  C  N  S  E  Y  R  L  F  D  *  F  Y  S  K  F  G  *  F  A  H  K  R  K  S  K  *  R  N  Y  S  R  I  F  R  T  C  E  F  H  I  L  F  S  W  N  K  R  H  Y  W  A  G  Y  S  *  Y  S  W  F  N  C  I  P  P  T  K  I  F  Q  L  C  *  E  N  K  H  Y  T  I  L  Q  *  W  N  P  F  C  W  F  S  K  N  *  E  N  W  S  *  N  K  G  R  A  S  E  *  L  V  I  *  V  G  H  V  V  C  Y  S  S  W  C  F  P  S  N  K   : W  *  N  *  A  I  S  K  V  H  T  A  *  I  A  A  G  K  F  L  Y  T  P  A  V  P  T  Y  T  R  R  N  S  F  F  P  S  K  I  H  S  R  G  Y  E  E  S  S  L  R  Y  L  K  T  I  S  Y  A  R   : D  G  N  F  *  C  Y  E  I  D  T  G  K  P  S  R  A  D  E  R  G  S  I  T  S  K  G  N  T  A  A  S  T  V  I  M  T  R  L  A  K  S  L  V  I  T  Y  S  F  S  F  S  H  V  R  N  A  V  L  G  D  L  Y  *  Q  L  C  S  E  *  R  V  R  K  C  Y  C  V  F  I  *  L  W  A  N  L  G  V  Y  F  T  L  I  *  *  R  S  V  *  W  L  I  N  N  S  *  E  C  C  Y  G  C  V  Q  K  V  G  *  A  N  F  R  N  L  M  Y  R  T  T  D  H  L  I  H  F  D  L  K  N  I  L  P  S  W  R  R  F  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48851" stop="48695"/>
                    <exon start="48625" stop="48513"/>
                    <exon start="46664" stop="46404"/>
                    <exon start="46276" stop="46172"/>
                    <exon start="45312" stop="45247"/>
                    <exon start="45119" stop="44898"/>
                    <exon start="43935" stop="43381"/>
                    <exon start="43031" stop="42435"/>
                    <exon start="42231" stop="42055"/>
                    <exon start="41979" stop="41872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2358</number_coding_nucleotides>
                  <number_encoded_amino_acids>786</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNSTDSIKTLLATTGGDTVKLFDLTLEPRDPCILSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPNAQVLRVLDYSKISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGISFSPTNDKIVASVGMDKKLYTFDSGSRRPTFCIPYEAPFSSLAFTDDGFTLAAGTSSGRVVFYDVRGKPQPLTVLRAYGNSEAVTSLCWQRAKPVIVNENNCTTEMALLGSAVEDSILMPDPLPAMMSSSLATSMTTSGSRTTVRSGSVDSFSFPAGITGSTSGTTGLSPSEETPIRSSLWKGGSLARLHAPRNFKDDMEVFSPLVEVQPITPSLDKLWDDQEGFKKDFDKKSSLLFPSSLRFPLPVEGGNENRPIFDWKSSSLPKQEDASFAQLSSTPTSSRGDDSSSITPPEAWGGERLSDRLSHLRQSGNMPSRFAISTSGPLAPGSMLSGLQDNFPATQSIGSLTSSTLSLANLRIKENPNEETILGSSEHASSTSFSVGTKGITGQGTLDTLGSTVSLPRRFSSYAERISTTPSFSDGTLSVGSPKTKKTGAETREELLNSLLSRSDTSSATAAGAFQAINGEIKQSQKSTLPELQQGSSFTLQLFQRTQEETLSSLQKSIHEDMRNLHLDILRQFHMQEMETSSAMKLILENQAELMKEVQLLRRETQQLRQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48912" e_stop="48513"/>
            <exon e_start="46664" e_stop="46410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="0.998"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48912" e_stop="48513" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="48512" i_stop="46665" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="46664" e_stop="46410" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48513"/>
              <exon start="46664" stop="46410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCTTCTGAAATTCAAATCTGTAAACTGTATATTTCACAATCCAAGAATCTCTTCATAGATGAATTCTACAGATTCGATTAAGACCCTTTTGGCTACTACTGGCGGTGACACTGTTAAGCTTTTTGACCTCACTTTGGAACCCCGTGATCCCTGCATTCTTAGCTATACTCCTTCCCCTGGATTCCAAGTCAATTCCGTCAAGTGGAATCACACTAGTTAGTTTCCCCTTTCTATCATGAATTTACATTCTTTTTGCAAATTCGATTTAACTTTGGGTGTTGCAGATTTGGTGGTGGCAAGCGCTGGAGATGACAAGAAGATATCTTTGTGGAGGAAAAATGGACAGAGTTTGGGGACTGTACCACTGGCCGGCACTGATAGTGCTGACAATATCGAG : GAGTCTATTTCAACAGTTAACTTTAGCAGCAAAGCATCCCGATACATATGTTCTGGAGGTAGTGGCCAAGTTATACGAATATGGGATTTGCAGCGGAAGCGTTGCATCAAATGGTTGAAAGGTCATACCAATACTATTAGTGGTGCAATGTACAATTGTAAAGATGAGCACTTAGCTTCTATCAGTCTTAATGGGAATCTTATACTTCACAACCTTGCTTCTGGTGCAAAGGCTGCTGAACTCAAGGATCCAAAT</gDNA_template>
            <first_frame> P  S  S  E  I  Q  I  C  K  L  Y  I  S  Q  S  K  N  L  F  I  D  E  F  Y  R  F  D  *  D  P  F  G  Y  Y  W  R  *  H  C  *  A  F  *  P  H  F  G  T  P  *  S  L  H  S  *  L  Y  S  F  P  W  I  P  S  Q  F  R  Q  V  E  S  H  *  L  V  S  P  F  Y  H  E  F  T  F  F  L  Q  I  R  F  N  F  G  C  C  R  F  G  G  G  K  R  W  R  *  Q  E  D  I  F  V  E  E  K  W  T  E  F  G  D  C  T  T  G  R  H  *  *  C  *  Q  Y  R   : G  V  Y  F  N  S  *  L  *  Q  Q  S  I  P  I  H  M  F  W  R  *  W  P  S  Y  T  N  M  G  F  A  A  E  A  L  H  Q  M  V  E  R  S  Y  Q  Y  Y  *  W  C  N  V  Q  L  *  R  *  A  L  S  F  Y  Q  S  *  W  E  S  Y  T  S  Q  P  C  F  W  C  K  G  C  *  T  Q  G  S  K  </first_frame>
            <second_frame>  L  L  L  K  F  K  S  V  N  C  I  F  H  N  P  R  I  S  S  *  M  N  S  T  D  S  I  K  T  L  L  A  T  T  G  G  D  T  V  K  L  F  D  L  T  L  E  P  R  D  P  C  I  L  S  Y  T  P  S  P  G  F  Q  V  N  S  V  K  W  N  H  T  S  *  F  P  L  S  I  M  N  L  H  S  F  C  K  F  D  L  T  L  G  V  A  D  L  V  V  A  S  A  G  D  D  K  K  I  S  L  W  R  K  N  G  Q  S  L  G  T  V  P  L  A  G  T  D  S  A  D  N  I  E  :  E  S  I  S  T  V  N  F  S  S  K  A  S  R  Y  I  C  S  G  G  S  G  Q  V  I  R  I  W  D  L  Q  R  K  R  C  I  K  W  L  K  G  H  T  N  T  I  S  G  A  M  Y  N  C  K  D  E  H  L  A  S  I  S  L  N  G  N  L  I  L  H  N  L  A  S  G  A  K  A  A  E  L  K  D  P  N </second_frame>
            <third_frame>   F  F  *  N  S  N  L  *  T  V  Y  F  T  I  Q  E  S  L  H  R  *  I  L  Q  I  R  L  R  P  F  W  L  L  L  A  V  T  L  L  S  F  L  T  S  L  W  N  P  V  I  P  A  F  L  A  I  L  L  P  L  D  S  K  S  I  P  S  S  G  I  T  L  V  S  F  P  F  L  S  *  I  Y  I  L  F  A  N  S  I  *  L  W  V  L  Q  I  W  W  W  Q  A  L  E  M  T  R  R  Y  L  C  G  G  K  M  D  R  V  W  G  L  Y  H  W  P  A  L  I  V  L  T  I  S  R :   S  L  F  Q  Q  L  T  L  A  A  K  H  P  D  T  Y  V  L  E  V  V  A  K  L  Y  E  Y  G  I  C  S  G  S  V  A  S  N  G  *  K  V  I  P  I  L  L  V  V  Q  C  T  I  V  K  M  S  T  *  L  L  S  V  L  M  G  I  L  Y  F  T  T  L  L  L  V  Q  R  L  L  N  S  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48689" stop="48513"/>
                    <exon start="46664" stop="46410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPLSIMNLHSFCKFDLTLGVADLVVASAGDDKKISLWRKNGQSLGTVPLAGTDSADNIEESISTVNFSSKASRYICSGGSGQVIRIWDLQRKRCIKWLKGHTNTISGAMYNCKDEHLASISLNGNLILHNLASGAKAAELKDPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51480" PGL_stop="51978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51480" e_stop="51978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="51480" e_stop="51978" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51480" stop="51978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAACGATTCAAAAAAAAAAGAATTATATAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCATGTTTTAAATGAATAAATAAATAAATAAGTAAATAAATAAAACAGATTTGTATTTATTTATTTTAAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAAATAGTCCTCTCTCTCTCACGCTTCTTAACTCCCTCTCTCACGTTCTCCATCTTCCTCACATTATTTCTGCCAAAACATCAACAGTTTTCATGCTTGAAGAACTAACAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGTCGAGAGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTAAAGTTTGAACATCGATTAAGGTATGGGTTTTCTTCTCTCTTGAATCCTTTCCCAAGAGACCCCTTAAGGTTCAAGATATTCATTCCGAAAAC</gDNA_template>
            <first_frame> C  N  D  S  K  K  K  E  L  Y  K  *  E  *  I  G  I  *  G  H  N  C  P  F  M  F  *  M  N  K  *  I  N  K  *  I  N  K  T  D  L  Y  L  F  I  L  N  V  I  *  L  I  L  E  L  V  S  *  S  K  *  S  S  L  S  H  A  S  *  L  P  L  S  R  S  P  S  S  S  H  Y  F  C  Q  N  I  N  S  F  H  A  *  R  T  N  K  N  F  *  A  K  E  K  V  I  K  T  S  R  L  R  E  V  C  R  E  R  C  T  L  K  *  I  G  S  G  L  E  E  F  S  G  Q  Q  H  *  S  L  N  I  D  *  G  M  G  F  L  L  S  *  I  L  S  Q  E  T  P  *  G  S  R  Y  S  F  R  K  </first_frame>
            <second_frame>  V  T  I  Q  K  K  K  N  Y  I  N  K  N  K  *  V  F  K  G  I  I  V  L  S  C  F  K  *  I  N  K  *  I  S  K  *  I  K  Q  I  C  I  Y  L  F  *  M  L  F  D  *  F  L  N  *  S  P  N  P  N  S  P  L  S  L  T  L  L  N  S  L  S  H  V  L  H  L  P  H  I  I  S  A  K  T  S  T  V  F  M  L  E  E  L  T  K  I  F  K  Q  K  K  K  *  S  K  R  Q  G  *  E  R  F  V  E  R  G  V  R  *  S  E  L  G  V  V  W  R  S  F  P  G  S  N  I  K  V  *  T  S  I  K  V  W  V  F  F  S  L  E  S  F  P  K  R  P  L  K  V  Q  D  I  H  S  E  N </second_frame>
            <third_frame>   *  R  F  K  K  K  R  I  I  *  I  R  I  N  R  Y  L  R  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  V  N  K  *  N  R  F  V  F  I  Y  F  K  C  Y  L  T  N  S  *  I  S  L  L  I  Q  I  V  L  S  L  S  R  F  L  T  P  S  L  T  F  S  I  F  L  T  L  F  L  P  K  H  Q  Q  F  S  C  L  K  N  *  Q  K  F  L  S  K  R  K  S  N  Q  N  V  K  A  K  R  G  L  S  R  E  V  Y  V  E  V  N  W  E  W  F  G  G  V  F  R  A  A  T  L  K  F  E  H  R  L  R  Y  G  F  S  S  L  L  N  P  F  P  R  D  P  L  R  F  K  I  F  I  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C03HBa0034A02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51764" stop="51976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKFLSKRKSNQNVKAKRGLSREVYVEVNWEWFGGVFRAATLKFEHRLRYGFSSLLNPFPRDPLRFKIFIPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 25136 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2094 bytes was the average size of a spliced alignment
$ 13576 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1939 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 01:44:38
-->
